xref: /petsc/src/mat/impls/sell/seq/sell.c (revision 9fc323658beecb572646cde2a15ce26a38213e75)
1d4002b98SHong Zhang 
2d4002b98SHong Zhang /*
3d4002b98SHong Zhang   Defines the basic matrix operations for the SELL matrix storage format.
4d4002b98SHong Zhang */
5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h>  /*I   "petscmat.h"  I*/
6d4002b98SHong Zhang #include <petscblaslapack.h>
7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h>
8d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H)
9d4002b98SHong Zhang   #include <immintrin.h>
10d4002b98SHong Zhang 
11d4002b98SHong Zhang   #if !defined(_MM_SCALE_8)
12d4002b98SHong Zhang   #define _MM_SCALE_8    8
13d4002b98SHong Zhang   #endif
14d4002b98SHong Zhang 
15d4002b98SHong Zhang   #if defined(__AVX512F__)
16d4002b98SHong Zhang   /* these do not work
17d4002b98SHong Zhang    vec_idx  = _mm512_loadunpackhi_epi32(vec_idx,acolidx);
18d4002b98SHong Zhang    vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval);
19d4002b98SHong Zhang   */
20d4002b98SHong Zhang     #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \
21d4002b98SHong Zhang     /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \
22d4002b98SHong Zhang     vec_idx  = _mm256_load_si256((__m256i const*)acolidx); \
23d4002b98SHong Zhang     vec_vals = _mm512_load_pd(aval); \
24d4002b98SHong Zhang     vec_x    = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \
25a48a6482SHong Zhang     vec_y    = _mm512_fmadd_pd(vec_x,vec_vals,vec_y)
26a48a6482SHong Zhang   #elif defined(__AVX2__)
27a48a6482SHong Zhang     #define AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \
28a48a6482SHong Zhang     vec_vals = _mm256_load_pd(aval); \
29a48a6482SHong Zhang     vec_idx  =  _mm_load_si128((__m128i const*)acolidx); /* SSE2 */ \
30a48a6482SHong Zhang     vec_x    = _mm256_i32gather_pd(x,vec_idx,_MM_SCALE_8); \
31a48a6482SHong Zhang     vec_y    = _mm256_fmadd_pd(vec_x,vec_vals,vec_y)
32d4002b98SHong Zhang   #endif
33d4002b98SHong Zhang #endif  /* PETSC_HAVE_IMMINTRIN_H */
34d4002b98SHong Zhang 
35d4002b98SHong Zhang /*@C
36d4002b98SHong Zhang  MatSeqSELLSetPreallocation - For good matrix assembly performance
37d4002b98SHong Zhang  the user should preallocate the matrix storage by setting the parameter nz
38d4002b98SHong Zhang  (or the array nnz).  By setting these parameters accurately, performance
39d4002b98SHong Zhang  during matrix assembly can be increased significantly.
40d4002b98SHong Zhang 
41d4002b98SHong Zhang  Collective on MPI_Comm
42d4002b98SHong Zhang 
43d4002b98SHong Zhang  Input Parameters:
44d4002b98SHong Zhang  +  B - The matrix
45d4002b98SHong Zhang  .  nz - number of nonzeros per row (same for all rows)
46d4002b98SHong Zhang  -  nnz - array containing the number of nonzeros in the various rows
47d4002b98SHong Zhang  (possibly different for each row) or NULL
48d4002b98SHong Zhang 
49d4002b98SHong Zhang  Notes:
50d4002b98SHong Zhang  If nnz is given then nz is ignored.
51d4002b98SHong Zhang 
52d4002b98SHong Zhang  Specify the preallocated storage with either nz or nnz (not both).
53d4002b98SHong Zhang  Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
54d4002b98SHong Zhang  allocation.  For large problems you MUST preallocate memory or you
55d4002b98SHong Zhang  will get TERRIBLE performance, see the users' manual chapter on matrices.
56d4002b98SHong Zhang 
57d4002b98SHong Zhang  You can call MatGetInfo() to get information on how effective the preallocation was;
58d4002b98SHong Zhang  for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
59d4002b98SHong Zhang  You can also run with the option -info and look for messages with the string
60d4002b98SHong Zhang  malloc in them to see if additional memory allocation was needed.
61d4002b98SHong Zhang 
62d4002b98SHong Zhang  Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix
63d4002b98SHong Zhang  entries or columns indices.
64d4002b98SHong Zhang 
65d4002b98SHong Zhang  The maximum number of nonzeos in any row should be as accuate as possible.
66d4002b98SHong Zhang  If it is underesitmated, you will get bad performance due to reallocation
67d4002b98SHong Zhang  (MatSeqXSELLReallocateSELL).
68d4002b98SHong Zhang 
69d4002b98SHong Zhang  Level: intermediate
70d4002b98SHong Zhang 
71d4002b98SHong Zhang  .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo()
72d4002b98SHong Zhang 
73d4002b98SHong Zhang  @*/
74d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[])
75d4002b98SHong Zhang {
76d4002b98SHong Zhang   PetscErrorCode ierr;
77d4002b98SHong Zhang 
78d4002b98SHong Zhang   PetscFunctionBegin;
79d4002b98SHong Zhang   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
80d4002b98SHong Zhang   PetscValidType(B,1);
81d4002b98SHong Zhang   ierr = PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen));CHKERRQ(ierr);
82d4002b98SHong Zhang   PetscFunctionReturn(0);
83d4002b98SHong Zhang }
84d4002b98SHong Zhang 
85d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[])
86d4002b98SHong Zhang {
87d4002b98SHong Zhang   Mat_SeqSELL    *b;
88d4002b98SHong Zhang   PetscInt       i,j,totalslices;
89d4002b98SHong Zhang   PetscBool      skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE;
90d4002b98SHong Zhang   PetscErrorCode ierr;
91d4002b98SHong Zhang 
92d4002b98SHong Zhang   PetscFunctionBegin;
93d4002b98SHong Zhang   if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE;
94d4002b98SHong Zhang   if (maxallocrow == MAT_SKIP_ALLOCATION) {
95d4002b98SHong Zhang     skipallocation = PETSC_TRUE;
96d4002b98SHong Zhang     maxallocrow    = 0;
97d4002b98SHong Zhang   }
98d4002b98SHong Zhang 
99d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
100d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
101d4002b98SHong Zhang 
102d4002b98SHong Zhang   /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */
103d4002b98SHong Zhang   if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5;
104d4002b98SHong Zhang   if (maxallocrow < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %D",maxallocrow);
105d4002b98SHong Zhang   if (rlen) {
106d4002b98SHong Zhang     for (i=0; i<B->rmap->n; i++) {
107d4002b98SHong Zhang       if (rlen[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %D value %D",i,rlen[i]);
108d4002b98SHong Zhang       if (rlen[i] > B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %D value %D rowlength %D",i,rlen[i],B->cmap->n);
109d4002b98SHong Zhang     }
110d4002b98SHong Zhang   }
111d4002b98SHong Zhang 
112d4002b98SHong Zhang   B->preallocated = PETSC_TRUE;
113d4002b98SHong Zhang 
114d4002b98SHong Zhang   b = (Mat_SeqSELL*)B->data;
115d4002b98SHong Zhang 
116d4002b98SHong Zhang   totalslices = B->rmap->n/8+((B->rmap->n & 0x07)?1:0); /* ceil(n/8) */
117d4002b98SHong Zhang   b->totalslices = totalslices;
118d4002b98SHong Zhang   if (!skipallocation) {
119d4002b98SHong Zhang     if (B->rmap->n & 0x07) PetscInfo1(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %D)\n",B->rmap->n);
120d4002b98SHong Zhang 
121d4002b98SHong Zhang     if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */
122d4002b98SHong Zhang       ierr = PetscMalloc1(totalslices+1,&b->sliidx);CHKERRQ(ierr);
123d4002b98SHong Zhang       ierr = PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr);
124d4002b98SHong Zhang     }
125d4002b98SHong Zhang     if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */
126d4002b98SHong Zhang       if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10;
127d4002b98SHong Zhang       else if (maxallocrow < 0) maxallocrow = 1;
128d4002b98SHong Zhang       for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow;
129d4002b98SHong Zhang     } else {
130d4002b98SHong Zhang       maxallocrow = 0;
131d4002b98SHong Zhang       b->sliidx[0] = 0;
132d4002b98SHong Zhang       for (i=1; i<totalslices; i++) {
133d4002b98SHong Zhang         b->sliidx[i] = 0;
134d4002b98SHong Zhang         for (j=0;j<8;j++) {
135d4002b98SHong Zhang           b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]);
136d4002b98SHong Zhang         }
137d4002b98SHong Zhang         maxallocrow = PetscMax(b->sliidx[i],maxallocrow);
138d4002b98SHong Zhang         b->sliidx[i] = b->sliidx[i-1] + 8*b->sliidx[i];
139d4002b98SHong Zhang       }
140d4002b98SHong Zhang       /* last slice */
141d4002b98SHong Zhang       b->sliidx[totalslices] = 0;
142d4002b98SHong Zhang       for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]);
143d4002b98SHong Zhang       maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow);
144d4002b98SHong Zhang       b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices];
145d4002b98SHong Zhang     }
146d4002b98SHong Zhang 
147d4002b98SHong Zhang     /* allocate space for val, colidx, rlen */
148d4002b98SHong Zhang     /* FIXME: should B's old memory be unlogged? */
149d4002b98SHong Zhang     ierr = MatSeqXSELLFreeSELL(B,&b->val,&b->colidx);CHKERRQ(ierr);
150d4002b98SHong Zhang     /* FIXME: assuming an element of the bit array takes 8 bits */
151d4002b98SHong Zhang     ierr = PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx);CHKERRQ(ierr);
152d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
153d4002b98SHong Zhang     /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */
154d4002b98SHong Zhang     ierr = PetscCalloc1(8*totalslices,&b->rlen);CHKERRQ(ierr);
155d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt));CHKERRQ(ierr);
156d4002b98SHong Zhang 
157d4002b98SHong Zhang     b->singlemalloc = PETSC_TRUE;
158d4002b98SHong Zhang     b->free_val     = PETSC_TRUE;
159d4002b98SHong Zhang     b->free_colidx  = PETSC_TRUE;
160d4002b98SHong Zhang   } else {
161d4002b98SHong Zhang     b->free_val    = PETSC_FALSE;
162d4002b98SHong Zhang     b->free_colidx = PETSC_FALSE;
163d4002b98SHong Zhang   }
164d4002b98SHong Zhang 
165d4002b98SHong Zhang   b->nz               = 0;
166d4002b98SHong Zhang   b->maxallocrow      = maxallocrow;
167d4002b98SHong Zhang   b->rlenmax          = maxallocrow;
168d4002b98SHong Zhang   b->maxallocmat      = b->sliidx[totalslices];
169d4002b98SHong Zhang   B->info.nz_unneeded = (double)b->maxallocmat;
170d4002b98SHong Zhang   if (realalloc) {
171d4002b98SHong Zhang     ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
172d4002b98SHong Zhang   }
173d4002b98SHong Zhang   PetscFunctionReturn(0);
174d4002b98SHong Zhang }
175d4002b98SHong Zhang 
1766108893eSStefano Zampini PetscErrorCode MatGetRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1776108893eSStefano Zampini {
1786108893eSStefano Zampini   Mat_SeqSELL *a = (Mat_SeqSELL*)A->data;
1796108893eSStefano Zampini   PetscInt    shift;
1806108893eSStefano Zampini 
1816108893eSStefano Zampini   PetscFunctionBegin;
1826108893eSStefano Zampini   if (row < 0 || row >= A->rmap->n) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range",row);
1836108893eSStefano Zampini   if (nz) *nz = a->rlen[row];
1846108893eSStefano Zampini   shift = a->sliidx[row>>3]+(row&0x07);
1856108893eSStefano Zampini   if (!a->getrowcols) {
1866108893eSStefano Zampini     PetscErrorCode ierr;
1876108893eSStefano Zampini 
1886108893eSStefano Zampini     ierr = PetscMalloc2(a->rlenmax,&a->getrowcols,a->rlenmax,&a->getrowvals);CHKERRQ(ierr);
1896108893eSStefano Zampini   }
1906108893eSStefano Zampini   if (idx) {
1916108893eSStefano Zampini     PetscInt j;
1926108893eSStefano Zampini     for (j=0; j<a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift+8*j];
1936108893eSStefano Zampini     *idx = a->getrowcols;
1946108893eSStefano Zampini   }
1956108893eSStefano Zampini   if (v) {
1966108893eSStefano Zampini     PetscInt j;
1976108893eSStefano Zampini     for (j=0; j<a->rlen[row]; j++) a->getrowvals[j] = a->val[shift+8*j];
1986108893eSStefano Zampini     *v = a->getrowvals;
1996108893eSStefano Zampini   }
2006108893eSStefano Zampini   PetscFunctionReturn(0);
2016108893eSStefano Zampini }
2026108893eSStefano Zampini 
2036108893eSStefano Zampini PetscErrorCode MatRestoreRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
2046108893eSStefano Zampini {
2056108893eSStefano Zampini   PetscFunctionBegin;
2066108893eSStefano Zampini   PetscFunctionReturn(0);
2076108893eSStefano Zampini }
2086108893eSStefano Zampini 
209d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
210d4002b98SHong Zhang {
211d4002b98SHong Zhang   Mat            B;
212d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
213e3f1f374SStefano Zampini   PetscInt       i;
214d4002b98SHong Zhang   PetscErrorCode ierr;
215d4002b98SHong Zhang 
216d4002b98SHong Zhang   PetscFunctionBegin;
217ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
218ad013a7bSRichard Tran Mills     B    = *newmat;
219e3f1f374SStefano Zampini     ierr = MatZeroEntries(B);CHKERRQ(ierr);
220ad013a7bSRichard Tran Mills   } else {
221d4002b98SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
222d4002b98SHong Zhang     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
223d4002b98SHong Zhang     ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
224d4002b98SHong Zhang     ierr = MatSeqAIJSetPreallocation(B,0,a->rlen);CHKERRQ(ierr);
225ad013a7bSRichard Tran Mills   }
226d4002b98SHong Zhang 
227e3f1f374SStefano Zampini   for (i=0; i<A->rmap->n; i++) {
228e3f1f374SStefano Zampini     PetscInt    nz,*cols;
229e3f1f374SStefano Zampini     PetscScalar *vals;
230e3f1f374SStefano Zampini 
231e3f1f374SStefano Zampini     ierr = MatGetRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr);
232e3f1f374SStefano Zampini     ierr = MatSetValues(B,1,&i,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
233e3f1f374SStefano Zampini     ierr = MatRestoreRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr);
234d4002b98SHong Zhang   }
235e3f1f374SStefano Zampini 
236d4002b98SHong Zhang   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
237d4002b98SHong Zhang   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
238d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
239d4002b98SHong Zhang 
240d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
241d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
242d4002b98SHong Zhang   } else {
243d4002b98SHong Zhang     *newmat = B;
244d4002b98SHong Zhang   }
245d4002b98SHong Zhang   PetscFunctionReturn(0);
246d4002b98SHong Zhang }
247d4002b98SHong Zhang 
248d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h>
249d4002b98SHong Zhang 
250d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
251d4002b98SHong Zhang {
252d4002b98SHong Zhang   Mat               B;
253d4002b98SHong Zhang   Mat_SeqAIJ        *a=(Mat_SeqAIJ*)A->data;
254d4002b98SHong Zhang   PetscInt          *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols;
255d4002b98SHong Zhang   const PetscInt    *cols;
256d4002b98SHong Zhang   const PetscScalar *vals;
257d4002b98SHong Zhang   PetscErrorCode    ierr;
258d4002b98SHong Zhang 
259d4002b98SHong Zhang   PetscFunctionBegin;
260d4002b98SHong Zhang   if (A->rmap->bs > 1) {
261d4002b98SHong Zhang     ierr = MatConvert_Basic(A,newtype,reuse,newmat);CHKERRQ(ierr);
262d4002b98SHong Zhang     PetscFunctionReturn(0);
263d4002b98SHong Zhang   }
264ad013a7bSRichard Tran Mills 
265ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
266ad013a7bSRichard Tran Mills     B = *newmat;
267ad013a7bSRichard Tran Mills   } else {
268d4002b98SHong Zhang     /* Can we just use ilen? */
269d4002b98SHong Zhang     ierr = PetscMalloc1(m,&rowlengths);CHKERRQ(ierr);
270d4002b98SHong Zhang     for (i=0; i<m; i++) {
271d4002b98SHong Zhang       rowlengths[i] = ai[i+1] - ai[i];
272d4002b98SHong Zhang     }
273d4002b98SHong Zhang 
274d4002b98SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
275d4002b98SHong Zhang     ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr);
276d4002b98SHong Zhang     ierr = MatSetType(B,MATSEQSELL);CHKERRQ(ierr);
277d4002b98SHong Zhang     ierr = MatSeqSELLSetPreallocation(B,0,rowlengths);CHKERRQ(ierr);
278d4002b98SHong Zhang     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
279ad013a7bSRichard Tran Mills   }
280d4002b98SHong Zhang 
281d4002b98SHong Zhang   for (row=0; row<m; row++) {
282d4002b98SHong Zhang     ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
283d4002b98SHong Zhang     ierr = MatSetValues(B,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
284d4002b98SHong Zhang     ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
285d4002b98SHong Zhang   }
286d4002b98SHong Zhang   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
287d4002b98SHong Zhang   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
288d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
289d4002b98SHong Zhang 
290d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
291d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
292d4002b98SHong Zhang   } else {
293d4002b98SHong Zhang     *newmat = B;
294d4002b98SHong Zhang   }
295d4002b98SHong Zhang   PetscFunctionReturn(0);
296d4002b98SHong Zhang }
297d4002b98SHong Zhang 
298d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy)
299d4002b98SHong Zhang {
300d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
301d4002b98SHong Zhang   PetscScalar       *y;
302d4002b98SHong Zhang   const PetscScalar *x;
303d4002b98SHong Zhang   const MatScalar   *aval=a->val;
304d4002b98SHong Zhang   PetscInt          totalslices=a->totalslices;
305d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
3067285fed1SHong Zhang   PetscInt          i,j;
307d4002b98SHong Zhang   PetscErrorCode    ierr;
308d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
309d4002b98SHong Zhang   __m512d           vec_x,vec_y,vec_vals;
310d4002b98SHong Zhang   __m256i           vec_idx;
311d4002b98SHong Zhang   __mmask8          mask;
312d4002b98SHong Zhang   __m512d           vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4;
313d4002b98SHong Zhang   __m256i           vec_idx2,vec_idx3,vec_idx4;
314a48a6482SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
315a48a6482SHong Zhang   __m128i           vec_idx;
316a48a6482SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
317a48a6482SHong Zhang   MatScalar         yval;
318a48a6482SHong Zhang   PetscInt          r,rows_left,row,nnz_in_row;
319d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
320d4002b98SHong Zhang   __m128d           vec_x_tmp;
321d4002b98SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
322d4002b98SHong Zhang   MatScalar         yval;
323d4002b98SHong Zhang   PetscInt          r,rows_left,row,nnz_in_row;
324d4002b98SHong Zhang #else
325d4002b98SHong Zhang   PetscScalar       sum[8];
326d4002b98SHong Zhang #endif
327d4002b98SHong Zhang 
328d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
329d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
330d4002b98SHong Zhang #endif
331d4002b98SHong Zhang 
332d4002b98SHong Zhang   PetscFunctionBegin;
333d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
334d4002b98SHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
335d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
336d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
337d4002b98SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
338d4002b98SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
339d4002b98SHong Zhang 
340d4002b98SHong Zhang     vec_y  = _mm512_setzero_pd();
341d4002b98SHong Zhang     vec_y2 = _mm512_setzero_pd();
342d4002b98SHong Zhang     vec_y3 = _mm512_setzero_pd();
343d4002b98SHong Zhang     vec_y4 = _mm512_setzero_pd();
344d4002b98SHong Zhang 
34538efe8efSHong Zhang     j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */
346d4002b98SHong Zhang     switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) {
347d4002b98SHong Zhang     case 3:
348d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
349d4002b98SHong Zhang       acolidx += 8; aval += 8;
350d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
351d4002b98SHong Zhang       acolidx += 8; aval += 8;
352d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
353d4002b98SHong Zhang       acolidx += 8; aval += 8;
354d4002b98SHong Zhang       j += 3;
355d4002b98SHong Zhang       break;
356d4002b98SHong Zhang     case 2:
357d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
358d4002b98SHong Zhang       acolidx += 8; aval += 8;
359d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
360d4002b98SHong Zhang       acolidx += 8; aval += 8;
361d4002b98SHong Zhang       j += 2;
362d4002b98SHong Zhang       break;
363d4002b98SHong Zhang     case 1:
364d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
365d4002b98SHong Zhang       acolidx += 8; aval += 8;
366d4002b98SHong Zhang       j += 1;
367d4002b98SHong Zhang       break;
368d4002b98SHong Zhang     }
369d4002b98SHong Zhang     #pragma novector
370d4002b98SHong Zhang     for (; j<(a->sliidx[i+1]>>3); j+=4) {
371d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
372d4002b98SHong Zhang       acolidx += 8; aval += 8;
373d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
374d4002b98SHong Zhang       acolidx += 8; aval += 8;
375d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
376d4002b98SHong Zhang       acolidx += 8; aval += 8;
377d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4);
378d4002b98SHong Zhang       acolidx += 8; aval += 8;
379d4002b98SHong Zhang     }
380d4002b98SHong Zhang 
381d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y2);
382d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y3);
383d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y4);
384d4002b98SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
385d4002b98SHong Zhang       mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07)));
386d4002b98SHong Zhang       _mm512_mask_store_pd(&y[8*i],mask,vec_y);
387d4002b98SHong Zhang     } else {
388d4002b98SHong Zhang       _mm512_store_pd(&y[8*i],vec_y);
389d4002b98SHong Zhang     }
390d4002b98SHong Zhang   }
391a48a6482SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
392a48a6482SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
393a48a6482SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
394a48a6482SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
395a48a6482SHong Zhang 
396a48a6482SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
397a48a6482SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
398a48a6482SHong Zhang       rows_left = A->rmap->n - 8*i;
399a48a6482SHong Zhang       for (r=0; r<rows_left; ++r) {
400a48a6482SHong Zhang         yval = (MatScalar)0;
401a48a6482SHong Zhang         row = 8*i + r;
402a48a6482SHong Zhang         nnz_in_row = a->rlen[row];
403a48a6482SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]];
404a48a6482SHong Zhang         y[row] = yval;
405a48a6482SHong Zhang       }
406a48a6482SHong Zhang       break;
407a48a6482SHong Zhang     }
408a48a6482SHong Zhang 
409a48a6482SHong Zhang     vec_y  = _mm256_setzero_pd();
410a48a6482SHong Zhang     vec_y2 = _mm256_setzero_pd();
411a48a6482SHong Zhang 
412a48a6482SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
413a48a6482SHong Zhang     #pragma novector
414a48a6482SHong Zhang     #pragma unroll(2)
415a48a6482SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
416a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
417a48a6482SHong Zhang       aval += 4; acolidx += 4;
418a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y2);
419a48a6482SHong Zhang       aval += 4; acolidx += 4;
420a48a6482SHong Zhang     }
421a48a6482SHong Zhang 
422a48a6482SHong Zhang     _mm256_store_pd(y+i*8,vec_y);
423a48a6482SHong Zhang     _mm256_store_pd(y+i*8+4,vec_y2);
424a48a6482SHong Zhang   }
425d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
426d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
427d4002b98SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
428d4002b98SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
429d4002b98SHong Zhang 
430d4002b98SHong Zhang     vec_y  = _mm256_setzero_pd();
431d4002b98SHong Zhang     vec_y2 = _mm256_setzero_pd();
432d4002b98SHong Zhang 
433d4002b98SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
434d4002b98SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
435d4002b98SHong Zhang       rows_left = A->rmap->n - 8*i;
436d4002b98SHong Zhang       for (r=0; r<rows_left; ++r) {
437d4002b98SHong Zhang         yval = (MatScalar)0;
438d4002b98SHong Zhang         row = 8*i + r;
439d4002b98SHong Zhang         nnz_in_row = a->rlen[row];
440d4002b98SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]];
441d4002b98SHong Zhang         y[row] = yval;
442d4002b98SHong Zhang       }
443d4002b98SHong Zhang       break;
444d4002b98SHong Zhang     }
445d4002b98SHong Zhang 
446d4002b98SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
447a48a6482SHong Zhang     #pragma novector
448a48a6482SHong Zhang     #pragma unroll(2)
4497285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
450d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
451d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
452d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
453d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
454d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
455d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
456d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
457d4002b98SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y);
458d4002b98SHong Zhang       aval     += 4;
459d4002b98SHong Zhang 
460d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
461d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
462d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
463d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
464d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
465d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
466d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
467d4002b98SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2);
468d4002b98SHong Zhang       aval     += 4;
469d4002b98SHong Zhang     }
470d4002b98SHong Zhang 
471d4002b98SHong Zhang     _mm256_storeu_pd(y + i*8,     vec_y);
472d4002b98SHong Zhang     _mm256_storeu_pd(y + i*8 + 4, vec_y2);
473d4002b98SHong Zhang   }
474d4002b98SHong Zhang #else
475d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
476d4002b98SHong Zhang     for (j=0; j<8; j++) sum[j] = 0.0;
477d4002b98SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
478d4002b98SHong Zhang       sum[0] += aval[j] * x[acolidx[j]];
479d4002b98SHong Zhang       sum[1] += aval[j+1] * x[acolidx[j+1]];
480d4002b98SHong Zhang       sum[2] += aval[j+2] * x[acolidx[j+2]];
481d4002b98SHong Zhang       sum[3] += aval[j+3] * x[acolidx[j+3]];
482d4002b98SHong Zhang       sum[4] += aval[j+4] * x[acolidx[j+4]];
483d4002b98SHong Zhang       sum[5] += aval[j+5] * x[acolidx[j+5]];
484d4002b98SHong Zhang       sum[6] += aval[j+6] * x[acolidx[j+6]];
485d4002b98SHong Zhang       sum[7] += aval[j+7] * x[acolidx[j+7]];
486d4002b98SHong Zhang     }
487d4002b98SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */
488d4002b98SHong Zhang       for(j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j];
489d4002b98SHong Zhang     } else {
4907285fed1SHong Zhang       for(j=0; j<8; j++) y[8*i+j] = sum[j];
491d4002b98SHong Zhang     }
492d4002b98SHong Zhang   }
493d4002b98SHong Zhang #endif
494d4002b98SHong Zhang 
495d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->nz-a->nonzerorowcnt);CHKERRQ(ierr); /* theoretical minimal FLOPs */
496d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
497d4002b98SHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
498d4002b98SHong Zhang   PetscFunctionReturn(0);
499d4002b98SHong Zhang }
500d4002b98SHong Zhang 
501d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h>
502d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz)
503d4002b98SHong Zhang {
504d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
505d4002b98SHong Zhang   PetscScalar       *y,*z;
506d4002b98SHong Zhang   const PetscScalar *x;
507d4002b98SHong Zhang   const MatScalar   *aval=a->val;
508d4002b98SHong Zhang   PetscInt          totalslices=a->totalslices;
509d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
510d4002b98SHong Zhang   PetscInt          i,j;
511d4002b98SHong Zhang   PetscErrorCode    ierr;
512d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5137285fed1SHong Zhang   __m512d           vec_x,vec_y,vec_vals;
514d4002b98SHong Zhang   __m256i           vec_idx;
515d4002b98SHong Zhang   __mmask8          mask;
5167285fed1SHong Zhang   __m512d           vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4;
5177285fed1SHong Zhang   __m256i           vec_idx2,vec_idx3,vec_idx4;
5187285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
5197285fed1SHong Zhang   __m128d           vec_x_tmp;
5207285fed1SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
5217285fed1SHong Zhang   MatScalar         yval;
5227285fed1SHong Zhang   PetscInt          r,row,nnz_in_row;
523d4002b98SHong Zhang #else
524d4002b98SHong Zhang   PetscScalar       sum[8];
525d4002b98SHong Zhang #endif
526d4002b98SHong Zhang 
527d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
528d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
529d4002b98SHong Zhang #endif
530d4002b98SHong Zhang 
531d4002b98SHong Zhang   PetscFunctionBegin;
532d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
533d4002b98SHong Zhang   ierr = VecGetArrayPair(yy,zz,&y,&z);CHKERRQ(ierr);
534d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5357285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
5367285fed1SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5377285fed1SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5387285fed1SHong Zhang 
539d4002b98SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
540d4002b98SHong Zhang       mask   = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07)));
5417285fed1SHong Zhang       vec_y  = _mm512_mask_load_pd(vec_y,mask,&y[8*i]);
5427285fed1SHong Zhang     } else {
5437285fed1SHong Zhang       vec_y  = _mm512_load_pd(&y[8*i]);
5447285fed1SHong Zhang     }
5457285fed1SHong Zhang     vec_y2 = _mm512_setzero_pd();
5467285fed1SHong Zhang     vec_y3 = _mm512_setzero_pd();
5477285fed1SHong Zhang     vec_y4 = _mm512_setzero_pd();
5487285fed1SHong Zhang 
5497285fed1SHong Zhang     j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */
5507285fed1SHong Zhang     switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) {
5517285fed1SHong Zhang     case 3:
5527285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5537285fed1SHong Zhang       acolidx += 8; aval += 8;
5547285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
5557285fed1SHong Zhang       acolidx += 8; aval += 8;
5567285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
5577285fed1SHong Zhang       acolidx += 8; aval += 8;
5587285fed1SHong Zhang       j += 3;
5597285fed1SHong Zhang       break;
5607285fed1SHong Zhang     case 2:
5617285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5627285fed1SHong Zhang       acolidx += 8; aval += 8;
5637285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
5647285fed1SHong Zhang       acolidx += 8; aval += 8;
5657285fed1SHong Zhang       j += 2;
5667285fed1SHong Zhang       break;
5677285fed1SHong Zhang     case 1:
5687285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5697285fed1SHong Zhang       acolidx += 8; aval += 8;
5707285fed1SHong Zhang       j += 1;
5717285fed1SHong Zhang       break;
5727285fed1SHong Zhang     }
5737285fed1SHong Zhang     #pragma novector
5747285fed1SHong Zhang     for (; j<(a->sliidx[i+1]>>3); j+=4) {
5757285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5767285fed1SHong Zhang       acolidx += 8; aval += 8;
5777285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
5787285fed1SHong Zhang       acolidx += 8; aval += 8;
5797285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
5807285fed1SHong Zhang       acolidx += 8; aval += 8;
5817285fed1SHong Zhang       AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4);
5827285fed1SHong Zhang       acolidx += 8; aval += 8;
5837285fed1SHong Zhang     }
5847285fed1SHong Zhang 
5857285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y2);
5867285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y3);
5877285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y4);
5887285fed1SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
589d4002b98SHong Zhang       _mm512_mask_store_pd(&z[8*i],mask,vec_y);
590d4002b98SHong Zhang     } else {
591d4002b98SHong Zhang       _mm512_store_pd(&z[8*i],vec_y);
592d4002b98SHong Zhang     }
5937285fed1SHong Zhang   }
5947285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
5957285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
5967285fed1SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5977285fed1SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5987285fed1SHong Zhang 
5997285fed1SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
6007285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
6017285fed1SHong Zhang       for (r=0; r<(A->rmap->n & 0x07); ++r) {
6027285fed1SHong Zhang         row        = 8*i + r;
6037285fed1SHong Zhang         yval       = (MatScalar)0.0;
6047285fed1SHong Zhang         nnz_in_row = a->rlen[row];
6057285fed1SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]];
6067285fed1SHong Zhang         z[row] = y[row] + yval;
6077285fed1SHong Zhang       }
6087285fed1SHong Zhang       break;
6097285fed1SHong Zhang     }
6107285fed1SHong Zhang 
6117285fed1SHong Zhang     vec_y  = _mm256_loadu_pd(y+8*i);
6127285fed1SHong Zhang     vec_y2 = _mm256_loadu_pd(y+8*i+4);
6137285fed1SHong Zhang 
6147285fed1SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
6157285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
6167285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
6177285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6187285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6197285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
6207285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6217285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6227285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
6237285fed1SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y);
6247285fed1SHong Zhang       aval     += 4;
6257285fed1SHong Zhang 
6267285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
6277285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6287285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6297285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
6307285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6317285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6327285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
6337285fed1SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2);
6347285fed1SHong Zhang       aval     += 4;
6357285fed1SHong Zhang     }
6367285fed1SHong Zhang 
6377285fed1SHong Zhang     _mm256_storeu_pd(z+i*8,vec_y);
6387285fed1SHong Zhang     _mm256_storeu_pd(z+i*8+4,vec_y2);
6397285fed1SHong Zhang   }
640d4002b98SHong Zhang #else
6417285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
6427285fed1SHong Zhang     for (j=0; j<8; j++) sum[j] = 0.0;
643d4002b98SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
644d4002b98SHong Zhang       sum[0] += aval[j] * x[acolidx[j]];
645d4002b98SHong Zhang       sum[1] += aval[j+1] * x[acolidx[j+1]];
646d4002b98SHong Zhang       sum[2] += aval[j+2] * x[acolidx[j+2]];
647d4002b98SHong Zhang       sum[3] += aval[j+3] * x[acolidx[j+3]];
648d4002b98SHong Zhang       sum[4] += aval[j+4] * x[acolidx[j+4]];
649d4002b98SHong Zhang       sum[5] += aval[j+5] * x[acolidx[j+5]];
650d4002b98SHong Zhang       sum[6] += aval[j+6] * x[acolidx[j+6]];
651d4002b98SHong Zhang       sum[7] += aval[j+7] * x[acolidx[j+7]];
652d4002b98SHong Zhang     }
6537285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
6547285fed1SHong Zhang       for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j];
655d4002b98SHong Zhang     } else {
6567285fed1SHong Zhang       for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j];
6577285fed1SHong Zhang     }
658d4002b98SHong Zhang   }
659d4002b98SHong Zhang #endif
660d4002b98SHong Zhang 
661d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
662d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
663d4002b98SHong Zhang   ierr = VecRestoreArrayPair(yy,zz,&y,&z);CHKERRQ(ierr);
664d4002b98SHong Zhang   PetscFunctionReturn(0);
665d4002b98SHong Zhang }
666d4002b98SHong Zhang 
667d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy)
668d4002b98SHong Zhang {
669d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
670d4002b98SHong Zhang   PetscScalar       *y;
671d4002b98SHong Zhang   const PetscScalar *x;
672d4002b98SHong Zhang   const MatScalar   *aval=a->val;
673d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
6747285fed1SHong Zhang   PetscInt          i,j,r,row,nnz_in_row,totalslices=a->totalslices;
675d4002b98SHong Zhang   PetscErrorCode    ierr;
676d4002b98SHong Zhang 
677d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
678d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
679d4002b98SHong Zhang #endif
680d4002b98SHong Zhang 
681d4002b98SHong Zhang   PetscFunctionBegin;
682*9fc32365SStefano Zampini   if (A->symmetric) {
683*9fc32365SStefano Zampini     ierr = MatMultAdd_SeqSELL(A,xx,zz,yy);CHKERRQ(ierr);
684*9fc32365SStefano Zampini     PetscFunctionReturn(0);
685*9fc32365SStefano Zampini   }
686d4002b98SHong Zhang   if (zz != yy) { ierr = VecCopy(zz,yy);CHKERRQ(ierr); }
687d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
688d4002b98SHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
689d4002b98SHong Zhang   for (i=0; i<a->totalslices; i++) { /* loop over slices */
6907285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
6917285fed1SHong Zhang       for (r=0; r<(A->rmap->n & 0x07); ++r) {
6927285fed1SHong Zhang         row        = 8*i + r;
6937285fed1SHong Zhang         nnz_in_row = a->rlen[row];
6947285fed1SHong Zhang         for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row];
6957285fed1SHong Zhang       }
6967285fed1SHong Zhang       break;
6977285fed1SHong Zhang     }
6987285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
6997285fed1SHong Zhang       y[acolidx[j]]   += aval[j] * x[8*i];
7007285fed1SHong Zhang       y[acolidx[j+1]] += aval[j+1] * x[8*i+1];
7017285fed1SHong Zhang       y[acolidx[j+2]] += aval[j+2] * x[8*i+2];
7027285fed1SHong Zhang       y[acolidx[j+3]] += aval[j+3] * x[8*i+3];
7037285fed1SHong Zhang       y[acolidx[j+4]] += aval[j+4] * x[8*i+4];
7047285fed1SHong Zhang       y[acolidx[j+5]] += aval[j+5] * x[8*i+5];
7057285fed1SHong Zhang       y[acolidx[j+6]] += aval[j+6] * x[8*i+6];
7067285fed1SHong Zhang       y[acolidx[j+7]] += aval[j+7] * x[8*i+7];
707d4002b98SHong Zhang     }
708d4002b98SHong Zhang   }
709d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->sliidx[a->totalslices]);CHKERRQ(ierr);
710d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
711d4002b98SHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
712d4002b98SHong Zhang   PetscFunctionReturn(0);
713d4002b98SHong Zhang }
714d4002b98SHong Zhang 
715d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy)
716d4002b98SHong Zhang {
717d4002b98SHong Zhang   PetscErrorCode ierr;
718d4002b98SHong Zhang 
719d4002b98SHong Zhang   PetscFunctionBegin;
720*9fc32365SStefano Zampini   if (A->symmetric) {
721*9fc32365SStefano Zampini     ierr = MatMult_SeqSELL(A,xx,yy);CHKERRQ(ierr);
722*9fc32365SStefano Zampini   } else {
723d4002b98SHong Zhang     ierr = VecSet(yy,0.0);CHKERRQ(ierr);
724d4002b98SHong Zhang     ierr = MatMultTransposeAdd_SeqSELL(A,xx,yy,yy);CHKERRQ(ierr);
725*9fc32365SStefano Zampini   }
726d4002b98SHong Zhang   PetscFunctionReturn(0);
727d4002b98SHong Zhang }
728d4002b98SHong Zhang 
729d4002b98SHong Zhang /*
730d4002b98SHong Zhang      Checks for missing diagonals
731d4002b98SHong Zhang */
732d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool  *missing,PetscInt *d)
733d4002b98SHong Zhang {
734d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
735d4002b98SHong Zhang   PetscInt    *diag,i;
736d4002b98SHong Zhang 
737d4002b98SHong Zhang   PetscFunctionBegin;
738d4002b98SHong Zhang   *missing = PETSC_FALSE;
739d4002b98SHong Zhang   if (A->rmap->n > 0 && !(a->colidx)) {
740d4002b98SHong Zhang     *missing = PETSC_TRUE;
741d4002b98SHong Zhang     if (d) *d = 0;
742d4002b98SHong Zhang     PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");
743d4002b98SHong Zhang   } else {
744d4002b98SHong Zhang     diag = a->diag;
745d4002b98SHong Zhang     for (i=0; i<A->rmap->n; i++) {
746d4002b98SHong Zhang       if (diag[i] == -1) {
747d4002b98SHong Zhang         *missing = PETSC_TRUE;
748d4002b98SHong Zhang         if (d) *d = i;
749d4002b98SHong Zhang         PetscInfo1(A,"Matrix is missing diagonal number %D\n",i);
750d4002b98SHong Zhang         break;
751d4002b98SHong Zhang       }
752d4002b98SHong Zhang     }
753d4002b98SHong Zhang   }
754d4002b98SHong Zhang   PetscFunctionReturn(0);
755d4002b98SHong Zhang }
756d4002b98SHong Zhang 
757d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A)
758d4002b98SHong Zhang {
759d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
760d4002b98SHong Zhang   PetscInt       i,j,m=A->rmap->n,shift;
761d4002b98SHong Zhang   PetscErrorCode ierr;
762d4002b98SHong Zhang 
763d4002b98SHong Zhang   PetscFunctionBegin;
764d4002b98SHong Zhang   if (!a->diag) {
765d4002b98SHong Zhang     ierr         = PetscMalloc1(m,&a->diag);CHKERRQ(ierr);
766d4002b98SHong Zhang     ierr         = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr);
767d4002b98SHong Zhang     a->free_diag = PETSC_TRUE;
768d4002b98SHong Zhang   }
769d4002b98SHong Zhang   for (i=0; i<m; i++) { /* loop over rows */
770d4002b98SHong Zhang     shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
771d4002b98SHong Zhang     a->diag[i] = -1;
772d4002b98SHong Zhang     for (j=0; j<a->rlen[i]; j++) {
773d4002b98SHong Zhang       if (a->colidx[shift+j*8] == i) {
774d4002b98SHong Zhang         a->diag[i] = shift+j*8;
775d4002b98SHong Zhang         break;
776d4002b98SHong Zhang       }
777d4002b98SHong Zhang     }
778d4002b98SHong Zhang   }
779d4002b98SHong Zhang   PetscFunctionReturn(0);
780d4002b98SHong Zhang }
781d4002b98SHong Zhang 
782d4002b98SHong Zhang /*
783d4002b98SHong Zhang   Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways
784d4002b98SHong Zhang */
785d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift)
786d4002b98SHong Zhang {
787d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*) A->data;
788d4002b98SHong Zhang   PetscInt       i,*diag,m = A->rmap->n;
789d4002b98SHong Zhang   MatScalar      *val = a->val;
790d4002b98SHong Zhang   PetscScalar    *idiag,*mdiag;
791d4002b98SHong Zhang   PetscErrorCode ierr;
792d4002b98SHong Zhang 
793d4002b98SHong Zhang   PetscFunctionBegin;
794d4002b98SHong Zhang   if (a->idiagvalid) PetscFunctionReturn(0);
795d4002b98SHong Zhang   ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr);
796d4002b98SHong Zhang   diag = a->diag;
797d4002b98SHong Zhang   if (!a->idiag) {
798d4002b98SHong Zhang     ierr = PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work);CHKERRQ(ierr);
799d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar));CHKERRQ(ierr);
800d4002b98SHong Zhang     val  = a->val;
801d4002b98SHong Zhang   }
802d4002b98SHong Zhang   mdiag = a->mdiag;
803d4002b98SHong Zhang   idiag = a->idiag;
804d4002b98SHong Zhang 
805d4002b98SHong Zhang   if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) {
806d4002b98SHong Zhang     for (i=0; i<m; i++) {
807d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
808d4002b98SHong Zhang       if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */
809d4002b98SHong Zhang         if (PetscRealPart(fshift)) {
810d4002b98SHong Zhang           ierr = PetscInfo1(A,"Zero diagonal on row %D\n",i);CHKERRQ(ierr);
811d4002b98SHong Zhang           A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
812d4002b98SHong Zhang           A->factorerror_zeropivot_value = 0.0;
813d4002b98SHong Zhang           A->factorerror_zeropivot_row   = i;
814d4002b98SHong Zhang         } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %D",i);
815d4002b98SHong Zhang       }
816d4002b98SHong Zhang       idiag[i] = 1.0/val[diag[i]];
817d4002b98SHong Zhang     }
818d4002b98SHong Zhang     ierr = PetscLogFlops(m);CHKERRQ(ierr);
819d4002b98SHong Zhang   } else {
820d4002b98SHong Zhang     for (i=0; i<m; i++) {
821d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
822d4002b98SHong Zhang       idiag[i] = omega/(fshift + val[diag[i]]);
823d4002b98SHong Zhang     }
824d4002b98SHong Zhang     ierr = PetscLogFlops(2.0*m);CHKERRQ(ierr);
825d4002b98SHong Zhang   }
826d4002b98SHong Zhang   a->idiagvalid = PETSC_TRUE;
827d4002b98SHong Zhang   PetscFunctionReturn(0);
828d4002b98SHong Zhang }
829d4002b98SHong Zhang 
830d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A)
831d4002b98SHong Zhang {
832d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
833d4002b98SHong Zhang   PetscErrorCode ierr;
834d4002b98SHong Zhang 
835d4002b98SHong Zhang   PetscFunctionBegin;
836d4002b98SHong Zhang   ierr = PetscMemzero(a->val,(a->sliidx[a->totalslices])*sizeof(PetscScalar));CHKERRQ(ierr);
837d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
838d4002b98SHong Zhang   PetscFunctionReturn(0);
839d4002b98SHong Zhang }
840d4002b98SHong Zhang 
841d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A)
842d4002b98SHong Zhang {
843d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
844d4002b98SHong Zhang   PetscErrorCode ierr;
845d4002b98SHong Zhang 
846d4002b98SHong Zhang   PetscFunctionBegin;
847d4002b98SHong Zhang #if defined(PETSC_USE_LOG)
848d4002b98SHong Zhang   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->n,A->cmap->n,a->nz);
849d4002b98SHong Zhang #endif
850d4002b98SHong Zhang   ierr = MatSeqXSELLFreeSELL(A,&a->val,&a->colidx);CHKERRQ(ierr);
851d4002b98SHong Zhang   ierr = ISDestroy(&a->row);CHKERRQ(ierr);
852d4002b98SHong Zhang   ierr = ISDestroy(&a->col);CHKERRQ(ierr);
853d4002b98SHong Zhang   ierr = PetscFree(a->diag);CHKERRQ(ierr);
854d4002b98SHong Zhang   ierr = PetscFree(a->ibdiag);CHKERRQ(ierr);
855d4002b98SHong Zhang   ierr = PetscFree(a->rlen);CHKERRQ(ierr);
856d4002b98SHong Zhang   ierr = PetscFree(a->sliidx);CHKERRQ(ierr);
857d4002b98SHong Zhang   ierr = PetscFree3(a->idiag,a->mdiag,a->ssor_work);CHKERRQ(ierr);
858d4002b98SHong Zhang   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
859d4002b98SHong Zhang   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
860d4002b98SHong Zhang   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
8616108893eSStefano Zampini   ierr = PetscFree2(a->getrowcols,a->getrowvals);CHKERRQ(ierr);
862d4002b98SHong Zhang 
863d4002b98SHong Zhang   ierr = PetscFree(A->data);CHKERRQ(ierr);
864d4002b98SHong Zhang 
865d4002b98SHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
866d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr);
867d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
868d4002b98SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
869d4002b98SHong Zhang #endif
870d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL);CHKERRQ(ierr);
871d4002b98SHong Zhang   PetscFunctionReturn(0);
872d4002b98SHong Zhang }
873d4002b98SHong Zhang 
874d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg)
875d4002b98SHong Zhang {
876d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
877d4002b98SHong Zhang   PetscErrorCode ierr;
878d4002b98SHong Zhang 
879d4002b98SHong Zhang   PetscFunctionBegin;
880d4002b98SHong Zhang   switch (op) {
881d4002b98SHong Zhang   case MAT_ROW_ORIENTED:
882d4002b98SHong Zhang     a->roworiented = flg;
883d4002b98SHong Zhang     break;
884d4002b98SHong Zhang   case MAT_KEEP_NONZERO_PATTERN:
885d4002b98SHong Zhang     a->keepnonzeropattern = flg;
886d4002b98SHong Zhang     break;
887d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATIONS:
888d4002b98SHong Zhang     a->nonew = (flg ? 0 : 1);
889d4002b98SHong Zhang     break;
890d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATION_ERR:
891d4002b98SHong Zhang     a->nonew = (flg ? -1 : 0);
892d4002b98SHong Zhang     break;
893d4002b98SHong Zhang   case MAT_NEW_NONZERO_ALLOCATION_ERR:
894d4002b98SHong Zhang     a->nonew = (flg ? -2 : 0);
895d4002b98SHong Zhang     break;
896d4002b98SHong Zhang   case MAT_UNUSED_NONZERO_LOCATION_ERR:
897d4002b98SHong Zhang     a->nounused = (flg ? -1 : 0);
898d4002b98SHong Zhang     break;
899d4002b98SHong Zhang   case MAT_NEW_DIAGONALS:
900d4002b98SHong Zhang   case MAT_IGNORE_OFF_PROC_ENTRIES:
901d4002b98SHong Zhang   case MAT_USE_HASH_TABLE:
902d4002b98SHong Zhang     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
903d4002b98SHong Zhang     break;
904d4002b98SHong Zhang   case MAT_SPD:
905d4002b98SHong Zhang   case MAT_SYMMETRIC:
906d4002b98SHong Zhang   case MAT_STRUCTURALLY_SYMMETRIC:
907d4002b98SHong Zhang   case MAT_HERMITIAN:
908d4002b98SHong Zhang   case MAT_SYMMETRY_ETERNAL:
909d4002b98SHong Zhang     /* These options are handled directly by MatSetOption() */
910d4002b98SHong Zhang     break;
911d4002b98SHong Zhang   default:
912d4002b98SHong Zhang     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
913d4002b98SHong Zhang   }
914d4002b98SHong Zhang   PetscFunctionReturn(0);
915d4002b98SHong Zhang }
916d4002b98SHong Zhang 
917d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v)
918d4002b98SHong Zhang {
919d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
920d4002b98SHong Zhang   PetscInt       i,j,n,shift;
921d4002b98SHong Zhang   PetscScalar    *x,zero=0.0;
922d4002b98SHong Zhang   PetscErrorCode ierr;
923d4002b98SHong Zhang 
924d4002b98SHong Zhang   PetscFunctionBegin;
925d4002b98SHong Zhang   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
926d4002b98SHong Zhang   if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
927d4002b98SHong Zhang 
928d4002b98SHong Zhang   if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) {
929d4002b98SHong Zhang     PetscInt *diag=a->diag;
930d4002b98SHong Zhang     ierr = VecGetArray(v,&x);CHKERRQ(ierr);
931d4002b98SHong Zhang     for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]];
932d4002b98SHong Zhang     ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
933d4002b98SHong Zhang     PetscFunctionReturn(0);
934d4002b98SHong Zhang   }
935d4002b98SHong Zhang 
936d4002b98SHong Zhang   ierr = VecSet(v,zero);CHKERRQ(ierr);
937d4002b98SHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
938d4002b98SHong Zhang   for (i=0; i<n; i++) { /* loop over rows */
939d4002b98SHong Zhang     shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
940d4002b98SHong Zhang     x[i] = 0;
941d4002b98SHong Zhang     for (j=0; j<a->rlen[i]; j++) {
942d4002b98SHong Zhang       if (a->colidx[shift+j*8] == i) {
943d4002b98SHong Zhang         x[i] = a->val[shift+j*8];
944d4002b98SHong Zhang         break;
945d4002b98SHong Zhang       }
946d4002b98SHong Zhang     }
947d4002b98SHong Zhang   }
948d4002b98SHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
949d4002b98SHong Zhang   PetscFunctionReturn(0);
950d4002b98SHong Zhang }
951d4002b98SHong Zhang 
952d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr)
953d4002b98SHong Zhang {
954d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
955d4002b98SHong Zhang   const PetscScalar *l,*r;
956d4002b98SHong Zhang   PetscInt          i,j,m,n,row;
957d4002b98SHong Zhang   PetscErrorCode    ierr;
958d4002b98SHong Zhang 
959d4002b98SHong Zhang   PetscFunctionBegin;
960d4002b98SHong Zhang   if (ll) {
961d4002b98SHong Zhang     /* The local size is used so that VecMPI can be passed to this routine
962d4002b98SHong Zhang        by MatDiagonalScale_MPISELL */
963d4002b98SHong Zhang     ierr = VecGetLocalSize(ll,&m);CHKERRQ(ierr);
964d4002b98SHong Zhang     if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length");
965d4002b98SHong Zhang     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
966d4002b98SHong Zhang     for (i=0; i<a->totalslices; i++) { /* loop over slices */
967d4002b98SHong Zhang       for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) {
968d4002b98SHong Zhang         a->val[j] *= l[8*i+row];
969d4002b98SHong Zhang       }
970d4002b98SHong Zhang     }
971d4002b98SHong Zhang     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
972d4002b98SHong Zhang     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
973d4002b98SHong Zhang   }
974d4002b98SHong Zhang   if (rr) {
975d4002b98SHong Zhang     ierr = VecGetLocalSize(rr,&n);CHKERRQ(ierr);
976d4002b98SHong Zhang     if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length");
977d4002b98SHong Zhang     ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr);
978d4002b98SHong Zhang     for (i=0; i<a->totalslices; i++) { /* loop over slices */
979d4002b98SHong Zhang       for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) {
980d4002b98SHong Zhang         a->val[j] *= r[a->colidx[j]];
981d4002b98SHong Zhang       }
982d4002b98SHong Zhang     }
983d4002b98SHong Zhang     ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr);
984d4002b98SHong Zhang     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
985d4002b98SHong Zhang   }
986d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
987d4002b98SHong Zhang   PetscFunctionReturn(0);
988d4002b98SHong Zhang }
989d4002b98SHong Zhang 
990d4002b98SHong Zhang extern PetscErrorCode MatSetValues_SeqSELL(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
991d4002b98SHong Zhang 
992d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
993d4002b98SHong Zhang {
994d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
995d4002b98SHong Zhang   PetscInt    *cp,i,k,low,high,t,row,col,l;
996d4002b98SHong Zhang   PetscInt    shift;
997d4002b98SHong Zhang   MatScalar   *vp;
998d4002b98SHong Zhang 
999d4002b98SHong Zhang   PetscFunctionBegin;
100068aafef3SStefano Zampini   for (k=0; k<m; k++) { /* loop over requested rows */
1001d4002b98SHong Zhang     row = im[k];
1002d4002b98SHong Zhang     if (row<0) continue;
1003d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1004d4002b98SHong Zhang     if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1);
1005d4002b98SHong Zhang #endif
1006d4002b98SHong Zhang     shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
1007d4002b98SHong Zhang     cp = a->colidx+shift; /* pointer to the row */
1008d4002b98SHong Zhang     vp = a->val+shift; /* pointer to the row */
100968aafef3SStefano Zampini     for (l=0; l<n; l++) { /* loop over requested columns */
1010d4002b98SHong Zhang       col = in[l];
1011d4002b98SHong Zhang       if (col<0) continue;
1012d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1013d4002b98SHong Zhang       if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %D max %D",col,A->cmap->n-1);
1014d4002b98SHong Zhang #endif
1015d4002b98SHong Zhang       high = a->rlen[row]; low = 0; /* assume unsorted */
1016d4002b98SHong Zhang       while (high-low > 5) {
1017d4002b98SHong Zhang         t = (low+high)/2;
1018d4002b98SHong Zhang         if (*(cp+t*8) > col) high = t;
1019d4002b98SHong Zhang         else low = t;
1020d4002b98SHong Zhang       }
1021d4002b98SHong Zhang       for (i=low; i<high; i++) {
1022d4002b98SHong Zhang         if (*(cp+8*i) > col) break;
1023d4002b98SHong Zhang         if (*(cp+8*i) == col) {
1024d4002b98SHong Zhang           *v++ = *(vp+8*i);
1025d4002b98SHong Zhang           goto finished;
1026d4002b98SHong Zhang         }
1027d4002b98SHong Zhang       }
1028d4002b98SHong Zhang       *v++ = 0.0;
1029d4002b98SHong Zhang     finished:;
1030d4002b98SHong Zhang     }
1031d4002b98SHong Zhang   }
1032d4002b98SHong Zhang   PetscFunctionReturn(0);
1033d4002b98SHong Zhang }
1034d4002b98SHong Zhang 
1035d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer)
1036d4002b98SHong Zhang {
1037d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1038d4002b98SHong Zhang   PetscInt          i,j,m=A->rmap->n,shift;
1039d4002b98SHong Zhang   const char        *name;
1040d4002b98SHong Zhang   PetscViewerFormat format;
1041d4002b98SHong Zhang   PetscErrorCode    ierr;
1042d4002b98SHong Zhang 
1043d4002b98SHong Zhang   PetscFunctionBegin;
1044d4002b98SHong Zhang   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1045d4002b98SHong Zhang   if (format == PETSC_VIEWER_ASCII_MATLAB) {
1046d4002b98SHong Zhang     PetscInt nofinalvalue = 0;
1047d4002b98SHong Zhang     /*
1048d4002b98SHong Zhang     if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) {
1049d4002b98SHong Zhang       nofinalvalue = 1;
1050d4002b98SHong Zhang     }
1051d4002b98SHong Zhang     */
1052d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1053d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",m,A->cmap->n);CHKERRQ(ierr);
1054d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %D \n",a->nz);CHKERRQ(ierr);
1055d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1056d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,4);\n",a->nz+nofinalvalue);CHKERRQ(ierr);
1057d4002b98SHong Zhang #else
1058d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,3);\n",a->nz+nofinalvalue);CHKERRQ(ierr);
1059d4002b98SHong Zhang #endif
1060d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = [\n");CHKERRQ(ierr);
1061d4002b98SHong Zhang 
1062d4002b98SHong Zhang     for (i=0; i<m; i++) {
1063d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1064d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1065d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1066d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1067d4002b98SHong Zhang #else
1068d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j]);CHKERRQ(ierr);
1069d4002b98SHong Zhang #endif
1070d4002b98SHong Zhang       }
1071d4002b98SHong Zhang     }
1072d4002b98SHong Zhang     /*
1073d4002b98SHong Zhang     if (nofinalvalue) {
1074d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1075d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e %18.16e\n",m,A->cmap->n,0.,0.);CHKERRQ(ierr);
1076d4002b98SHong Zhang #else
1077d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e\n",m,A->cmap->n,0.0);CHKERRQ(ierr);
1078d4002b98SHong Zhang #endif
1079d4002b98SHong Zhang     }
1080d4002b98SHong Zhang     */
1081d4002b98SHong Zhang     ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
1082d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name);CHKERRQ(ierr);
1083d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1084d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) {
1085d4002b98SHong Zhang     PetscFunctionReturn(0);
1086d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1087d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1088d4002b98SHong Zhang     for (i=0; i<m; i++) {
1089d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1090d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1091d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1092d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1093d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) {
1094d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1095d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) {
1096d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1097d4002b98SHong Zhang         } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) {
1098d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr);
1099d4002b98SHong Zhang         }
1100d4002b98SHong Zhang #else
1101d4002b98SHong Zhang         if (a->val[shift+8*j] != 0.0) {ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);}
1102d4002b98SHong Zhang #endif
1103d4002b98SHong Zhang       }
1104d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1105d4002b98SHong Zhang     }
1106d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1107d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_DENSE) {
1108d4002b98SHong Zhang     PetscInt    cnt=0,jcnt;
1109d4002b98SHong Zhang     PetscScalar value;
1110d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1111d4002b98SHong Zhang     PetscBool   realonly=PETSC_TRUE;
1112d4002b98SHong Zhang     for (i=0; i<a->sliidx[a->totalslices]; i++) {
1113d4002b98SHong Zhang       if (PetscImaginaryPart(a->val[i]) != 0.0) {
1114d4002b98SHong Zhang         realonly = PETSC_FALSE;
1115d4002b98SHong Zhang         break;
1116d4002b98SHong Zhang       }
1117d4002b98SHong Zhang     }
1118d4002b98SHong Zhang #endif
1119d4002b98SHong Zhang 
1120d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1121d4002b98SHong Zhang     for (i=0; i<m; i++) {
1122d4002b98SHong Zhang       jcnt = 0;
1123d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1124d4002b98SHong Zhang       for (j=0; j<A->cmap->n; j++) {
1125d4002b98SHong Zhang         if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) {
1126d4002b98SHong Zhang           value = a->val[cnt++];
1127d4002b98SHong Zhang           jcnt++;
1128d4002b98SHong Zhang         } else {
1129d4002b98SHong Zhang           value = 0.0;
1130d4002b98SHong Zhang         }
1131d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1132d4002b98SHong Zhang         if (realonly) {
1133d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value));CHKERRQ(ierr);
1134d4002b98SHong Zhang         } else {
1135d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value));CHKERRQ(ierr);
1136d4002b98SHong Zhang         }
1137d4002b98SHong Zhang #else
1138d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value);CHKERRQ(ierr);
1139d4002b98SHong Zhang #endif
1140d4002b98SHong Zhang       }
1141d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1142d4002b98SHong Zhang     }
1143d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1144d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) {
1145d4002b98SHong Zhang     PetscInt fshift=1;
1146d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1147d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1148d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n");CHKERRQ(ierr);
1149d4002b98SHong Zhang #else
1150d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n");CHKERRQ(ierr);
1151d4002b98SHong Zhang #endif
1152d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D\n", m, A->cmap->n, a->nz);CHKERRQ(ierr);
1153d4002b98SHong Zhang     for (i=0; i<m; i++) {
1154d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1155d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1156d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1157d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1158d4002b98SHong Zhang #else
1159d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j]);CHKERRQ(ierr);
1160d4002b98SHong Zhang #endif
1161d4002b98SHong Zhang       }
1162d4002b98SHong Zhang     }
1163d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
116468aafef3SStefano Zampini   } else if (format == PETSC_VIEWER_NATIVE) {
116568aafef3SStefano Zampini     for (i=0; i<a->totalslices; i++) { /* loop over slices */
116668aafef3SStefano Zampini       PetscInt row;
116768aafef3SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"slice %D: %D %D\n",i,a->sliidx[i],a->sliidx[i+1]);CHKERRQ(ierr);
116868aafef3SStefano Zampini       for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) {
116968aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX)
117068aafef3SStefano Zampini         if (PetscImaginaryPart(a->val[j]) > 0.0) {
117168aafef3SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g + %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
117268aafef3SStefano Zampini         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
117368aafef3SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g - %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),-(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
117468aafef3SStefano Zampini         } else {
117568aafef3SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
117668aafef3SStefano Zampini         }
117768aafef3SStefano Zampini #else
117868aafef3SStefano Zampini         ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g\n",8*i+row,a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
117968aafef3SStefano Zampini #endif
118068aafef3SStefano Zampini       }
118168aafef3SStefano Zampini     }
1182d4002b98SHong Zhang   } else {
1183d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1184d4002b98SHong Zhang     if (A->factortype) {
1185d4002b98SHong Zhang       for (i=0; i<m; i++) {
1186d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07);
1187d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1188d4002b98SHong Zhang         /* L part */
1189d4002b98SHong Zhang         for (j=shift; j<a->diag[i]; j+=8) {
1190d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1191d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) {
1192d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
1193d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) {
1194d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr);
1195d4002b98SHong Zhang           } else {
1196d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
1197d4002b98SHong Zhang           }
1198d4002b98SHong Zhang #else
1199d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
1200d4002b98SHong Zhang #endif
1201d4002b98SHong Zhang         }
1202d4002b98SHong Zhang         /* diagonal */
1203d4002b98SHong Zhang         j = a->diag[i];
1204d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1205d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[j]) > 0.0) {
1206d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]));CHKERRQ(ierr);
1207d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1208d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])));CHKERRQ(ierr);
1209d4002b98SHong Zhang         } else {
1210d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]));CHKERRQ(ierr);
1211d4002b98SHong Zhang         }
1212d4002b98SHong Zhang #else
1213d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)(1.0/a->val[j]));CHKERRQ(ierr);
1214d4002b98SHong Zhang #endif
1215d4002b98SHong Zhang 
1216d4002b98SHong Zhang         /* U part */
1217d4002b98SHong Zhang         for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) {
1218d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1219d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
1220d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
1221d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1222d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr);
1223d4002b98SHong Zhang           } else {
1224d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
1225d4002b98SHong Zhang           }
1226d4002b98SHong Zhang #else
1227d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
1228d4002b98SHong Zhang #endif
1229d4002b98SHong Zhang         }
1230d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1231d4002b98SHong Zhang       }
1232d4002b98SHong Zhang     } else {
1233d4002b98SHong Zhang       for (i=0; i<m; i++) {
1234d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07);
1235d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1236d4002b98SHong Zhang         for (j=0; j<a->rlen[i]; j++) {
1237d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1238d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
1239d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1240d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1241d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1242d4002b98SHong Zhang           } else {
1243d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr);
1244d4002b98SHong Zhang           }
1245d4002b98SHong Zhang #else
1246d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);
1247d4002b98SHong Zhang #endif
1248d4002b98SHong Zhang         }
1249d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1250d4002b98SHong Zhang       }
1251d4002b98SHong Zhang     }
1252d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1253d4002b98SHong Zhang   }
1254d4002b98SHong Zhang   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
1255d4002b98SHong Zhang   PetscFunctionReturn(0);
1256d4002b98SHong Zhang }
1257d4002b98SHong Zhang 
1258d4002b98SHong Zhang #include <petscdraw.h>
1259d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa)
1260d4002b98SHong Zhang {
1261d4002b98SHong Zhang   Mat               A=(Mat)Aa;
1262d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1263d4002b98SHong Zhang   PetscInt          i,j,m=A->rmap->n,shift;
1264d4002b98SHong Zhang   int               color;
1265d4002b98SHong Zhang   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1266d4002b98SHong Zhang   PetscViewer       viewer;
1267d4002b98SHong Zhang   PetscViewerFormat format;
1268d4002b98SHong Zhang   PetscErrorCode    ierr;
1269d4002b98SHong Zhang 
1270d4002b98SHong Zhang   PetscFunctionBegin;
1271d4002b98SHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1272d4002b98SHong Zhang   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1273d4002b98SHong Zhang   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
1274d4002b98SHong Zhang 
1275d4002b98SHong Zhang   /* loop over matrix elements drawing boxes */
1276d4002b98SHong Zhang 
1277d4002b98SHong Zhang   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1278d4002b98SHong Zhang     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1279d4002b98SHong Zhang     /* Blue for negative, Cyan for zero and  Red for positive */
1280d4002b98SHong Zhang     color = PETSC_DRAW_BLUE;
1281d4002b98SHong Zhang     for (i=0; i<m; i++) {
1282d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1283d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1284d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1285d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1286d4002b98SHong Zhang         if (PetscRealPart(a->val[shift+8*j]) >=  0.) continue;
1287d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1288d4002b98SHong Zhang       }
1289d4002b98SHong Zhang     }
1290d4002b98SHong Zhang     color = PETSC_DRAW_CYAN;
1291d4002b98SHong Zhang     for (i=0; i<m; i++) {
1292d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1293d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1294d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1295d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1296d4002b98SHong Zhang         if (a->val[shift+8*j] !=  0.) continue;
1297d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1298d4002b98SHong Zhang       }
1299d4002b98SHong Zhang     }
1300d4002b98SHong Zhang     color = PETSC_DRAW_RED;
1301d4002b98SHong Zhang     for (i=0; i<m; i++) {
1302d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1303d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1304d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1305d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1306d4002b98SHong Zhang         if (PetscRealPart(a->val[shift+8*j]) <=  0.) continue;
1307d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1308d4002b98SHong Zhang       }
1309d4002b98SHong Zhang     }
1310d4002b98SHong Zhang     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1311d4002b98SHong Zhang   } else {
1312d4002b98SHong Zhang     /* use contour shading to indicate magnitude of values */
1313d4002b98SHong Zhang     /* first determine max of all nonzero values */
1314d4002b98SHong Zhang     PetscReal minv=0.0,maxv=0.0;
1315d4002b98SHong Zhang     PetscInt  count=0;
1316d4002b98SHong Zhang     PetscDraw popup;
1317d4002b98SHong Zhang     for (i=0; i<a->sliidx[a->totalslices]; i++) {
1318d4002b98SHong Zhang       if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]);
1319d4002b98SHong Zhang     }
1320d4002b98SHong Zhang     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1321d4002b98SHong Zhang     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
1322d4002b98SHong Zhang     ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr);
1323d4002b98SHong Zhang 
1324d4002b98SHong Zhang     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1325d4002b98SHong Zhang     for (i=0; i<m; i++) {
1326d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1327d4002b98SHong Zhang       y_l = m - i - 1.0;
1328d4002b98SHong Zhang       y_r = y_l + 1.0;
1329d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1330d4002b98SHong Zhang         x_l = a->colidx[shift+j*8];
1331d4002b98SHong Zhang         x_r = x_l + 1.0;
1332d4002b98SHong Zhang         color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv);
1333d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1334d4002b98SHong Zhang         count++;
1335d4002b98SHong Zhang       }
1336d4002b98SHong Zhang     }
1337d4002b98SHong Zhang     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1338d4002b98SHong Zhang   }
1339d4002b98SHong Zhang   PetscFunctionReturn(0);
1340d4002b98SHong Zhang }
1341d4002b98SHong Zhang 
1342d4002b98SHong Zhang #include <petscdraw.h>
1343d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer)
1344d4002b98SHong Zhang {
1345d4002b98SHong Zhang   PetscDraw      draw;
1346d4002b98SHong Zhang   PetscReal      xr,yr,xl,yl,h,w;
1347d4002b98SHong Zhang   PetscBool      isnull;
1348d4002b98SHong Zhang   PetscErrorCode ierr;
1349d4002b98SHong Zhang 
1350d4002b98SHong Zhang   PetscFunctionBegin;
1351d4002b98SHong Zhang   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1352d4002b98SHong Zhang   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1353d4002b98SHong Zhang   if (isnull) PetscFunctionReturn(0);
1354d4002b98SHong Zhang 
1355d4002b98SHong Zhang   xr   = A->cmap->n; yr  = A->rmap->n; h = yr/10.0; w = xr/10.0;
1356d4002b98SHong Zhang   xr  += w;          yr += h;         xl = -w;     yl = -h;
1357d4002b98SHong Zhang   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1358d4002b98SHong Zhang   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1359d4002b98SHong Zhang   ierr = PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A);CHKERRQ(ierr);
1360d4002b98SHong Zhang   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1361d4002b98SHong Zhang   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
1362d4002b98SHong Zhang   PetscFunctionReturn(0);
1363d4002b98SHong Zhang }
1364d4002b98SHong Zhang 
1365d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer)
1366d4002b98SHong Zhang {
1367d4002b98SHong Zhang   PetscBool      iascii,isbinary,isdraw;
1368d4002b98SHong Zhang   PetscErrorCode ierr;
1369d4002b98SHong Zhang 
1370d4002b98SHong Zhang   PetscFunctionBegin;
1371d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1372d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1373d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1374d4002b98SHong Zhang   if (iascii) {
1375d4002b98SHong Zhang     ierr = MatView_SeqSELL_ASCII(A,viewer);CHKERRQ(ierr);
1376d4002b98SHong Zhang   } else if (isbinary) {
1377d4002b98SHong Zhang     /* ierr = MatView_SeqSELL_Binary(A,viewer);CHKERRQ(ierr); */
1378d4002b98SHong Zhang   } else if (isdraw) {
1379d4002b98SHong Zhang     ierr = MatView_SeqSELL_Draw(A,viewer);CHKERRQ(ierr);
1380d4002b98SHong Zhang   }
1381d4002b98SHong Zhang   PetscFunctionReturn(0);
1382d4002b98SHong Zhang }
1383d4002b98SHong Zhang 
1384d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode)
1385d4002b98SHong Zhang {
1386d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1387d4002b98SHong Zhang   PetscInt       i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k;
1388d4002b98SHong Zhang   MatScalar      *vp;
1389d4002b98SHong Zhang   PetscErrorCode ierr;
1390d4002b98SHong Zhang 
1391d4002b98SHong Zhang   PetscFunctionBegin;
1392d4002b98SHong Zhang   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1393d4002b98SHong Zhang   /* To do: compress out the unused elements */
1394d4002b98SHong Zhang   ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr);
1395d4002b98SHong Zhang   ierr = PetscInfo6(A,"Matrix size: %D X %D; storage space: %D allocated %D used (%D nonzeros+%D paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz);CHKERRQ(ierr);
1396d4002b98SHong Zhang   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues() is %D\n",a->reallocs);CHKERRQ(ierr);
1397d4002b98SHong Zhang   ierr = PetscInfo1(A,"Maximum nonzeros in any row is %D\n",a->rlenmax);CHKERRQ(ierr);
1398d4002b98SHong Zhang   /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */
1399d4002b98SHong Zhang   for (i=0; i<a->totalslices; ++i) {
1400d4002b98SHong Zhang     shift = a->sliidx[i];    /* starting index of the slice */
1401d4002b98SHong Zhang     cp    = a->colidx+shift; /* pointer to the column indices of the slice */
1402d4002b98SHong Zhang     vp    = a->val+shift;    /* pointer to the nonzero values of the slice */
1403d4002b98SHong Zhang     for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */
1404d4002b98SHong Zhang       row  = 8*i + row_in_slice;
1405d4002b98SHong Zhang       nrow = a->rlen[row]; /* number of nonzeros in row */
1406d4002b98SHong Zhang       /*
1407d4002b98SHong Zhang         Search for the nearest nonzero. Normally setting the index to zero may cause extra communication.
1408d4002b98SHong Zhang         But if the entire slice are empty, it is fine to use 0 since the index will not be loaded.
1409d4002b98SHong Zhang       */
1410d4002b98SHong Zhang       lastcol = 0;
1411d4002b98SHong Zhang       if (nrow>0) { /* nonempty row */
1412d4002b98SHong Zhang         lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */
1413d4002b98SHong Zhang       } else if (!row_in_slice) { /* first row of the currect slice is empty */
1414d4002b98SHong Zhang         for (j=1;j<8;j++) {
1415d4002b98SHong Zhang           if (a->rlen[8*i+j]) {
1416d4002b98SHong Zhang             lastcol = cp[j];
1417d4002b98SHong Zhang             break;
1418d4002b98SHong Zhang           }
1419d4002b98SHong Zhang         }
1420d4002b98SHong Zhang       } else {
1421d4002b98SHong Zhang         if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */
1422d4002b98SHong Zhang       }
1423d4002b98SHong Zhang 
1424d4002b98SHong Zhang       for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) {
1425d4002b98SHong Zhang         cp[8*k+row_in_slice] = lastcol;
1426d4002b98SHong Zhang         vp[8*k+row_in_slice] = (MatScalar)0;
1427d4002b98SHong Zhang       }
1428d4002b98SHong Zhang     }
1429d4002b98SHong Zhang   }
1430d4002b98SHong Zhang 
1431d4002b98SHong Zhang   A->info.mallocs += a->reallocs;
1432d4002b98SHong Zhang   a->reallocs      = 0;
1433d4002b98SHong Zhang 
1434d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
1435d4002b98SHong Zhang   PetscFunctionReturn(0);
1436d4002b98SHong Zhang }
1437d4002b98SHong Zhang 
1438d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info)
1439d4002b98SHong Zhang {
1440d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1441d4002b98SHong Zhang 
1442d4002b98SHong Zhang   PetscFunctionBegin;
1443d4002b98SHong Zhang   info->block_size   = 1.0;
1444d4002b98SHong Zhang   info->nz_allocated = (double)a->maxallocmat;
1445d4002b98SHong Zhang   info->nz_used      = (double)a->sliidx[a->totalslices]; /* include padding zeros */
1446d4002b98SHong Zhang   info->nz_unneeded  = (double)(a->maxallocmat-a->sliidx[a->totalslices]);
1447d4002b98SHong Zhang   info->assemblies   = (double)A->num_ass;
1448d4002b98SHong Zhang   info->mallocs      = (double)A->info.mallocs;
1449d4002b98SHong Zhang   info->memory       = ((PetscObject)A)->mem;
1450d4002b98SHong Zhang   if (A->factortype) {
1451d4002b98SHong Zhang     info->fill_ratio_given  = A->info.fill_ratio_given;
1452d4002b98SHong Zhang     info->fill_ratio_needed = A->info.fill_ratio_needed;
1453d4002b98SHong Zhang     info->factor_mallocs    = A->info.factor_mallocs;
1454d4002b98SHong Zhang   } else {
1455d4002b98SHong Zhang     info->fill_ratio_given  = 0;
1456d4002b98SHong Zhang     info->fill_ratio_needed = 0;
1457d4002b98SHong Zhang     info->factor_mallocs    = 0;
1458d4002b98SHong Zhang   }
1459d4002b98SHong Zhang   PetscFunctionReturn(0);
1460d4002b98SHong Zhang }
1461d4002b98SHong Zhang 
1462d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
1463d4002b98SHong Zhang {
1464d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1465d4002b98SHong Zhang   PetscInt       shift,i,k,l,low,high,t,ii,row,col,nrow;
1466d4002b98SHong Zhang   PetscInt       *cp,nonew=a->nonew,lastcol=-1;
1467d4002b98SHong Zhang   MatScalar      *vp,value;
1468d4002b98SHong Zhang   PetscErrorCode ierr;
1469d4002b98SHong Zhang 
1470d4002b98SHong Zhang   PetscFunctionBegin;
1471d4002b98SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
1472d4002b98SHong Zhang     row = im[k];
1473d4002b98SHong Zhang     if (row < 0) continue;
1474d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1475d4002b98SHong Zhang     if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1);
1476d4002b98SHong Zhang #endif
1477d4002b98SHong Zhang     shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
1478d4002b98SHong Zhang     cp    = a->colidx+shift; /* pointer to the row */
1479d4002b98SHong Zhang     vp    = a->val+shift; /* pointer to the row */
1480d4002b98SHong Zhang     nrow  = a->rlen[row];
1481d4002b98SHong Zhang     low   = 0;
1482d4002b98SHong Zhang     high  = nrow;
1483d4002b98SHong Zhang 
1484d4002b98SHong Zhang     for (l=0; l<n; l++) { /* loop over added columns */
1485d4002b98SHong Zhang       col = in[l];
1486d4002b98SHong Zhang       if (col<0) continue;
1487d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1488d4002b98SHong Zhang       if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %D max %D",col,A->cmap->n-1);
1489d4002b98SHong Zhang #endif
1490d4002b98SHong Zhang       if (a->roworiented) {
1491d4002b98SHong Zhang         value = v[l+k*n];
1492d4002b98SHong Zhang       } else {
1493d4002b98SHong Zhang         value = v[k+l*m];
1494d4002b98SHong Zhang       }
1495d4002b98SHong Zhang       if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue;
1496d4002b98SHong Zhang 
1497d4002b98SHong Zhang       /* search in this row for the specified colmun, i indicates the column to be set */
1498d4002b98SHong Zhang       if (col <= lastcol) low = 0;
1499d4002b98SHong Zhang       else high = nrow;
1500d4002b98SHong Zhang       lastcol = col;
1501d4002b98SHong Zhang       while (high-low > 5) {
1502d4002b98SHong Zhang         t = (low+high)/2;
1503d4002b98SHong Zhang         if (*(cp+t*8) > col) high = t;
1504d4002b98SHong Zhang         else low = t;
1505d4002b98SHong Zhang       }
1506d4002b98SHong Zhang       for (i=low; i<high; i++) {
1507d4002b98SHong Zhang         if (*(cp+i*8) > col) break;
1508d4002b98SHong Zhang         if (*(cp+i*8) == col) {
1509d4002b98SHong Zhang           if (is == ADD_VALUES) *(vp+i*8) += value;
1510d4002b98SHong Zhang           else *(vp+i*8) = value;
1511d4002b98SHong Zhang           low = i + 1;
1512d4002b98SHong Zhang           goto noinsert;
1513d4002b98SHong Zhang         }
1514d4002b98SHong Zhang       }
1515d4002b98SHong Zhang       if (value == 0.0 && a->ignorezeroentries) goto noinsert;
1516d4002b98SHong Zhang       if (nonew == 1) goto noinsert;
1517d4002b98SHong Zhang       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
1518d4002b98SHong Zhang       /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */
1519d4002b98SHong Zhang       MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar);
1520d4002b98SHong Zhang       /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */
1521d4002b98SHong Zhang       for (ii=nrow-1; ii>=i; ii--) {
1522d4002b98SHong Zhang         *(cp+(ii+1)*8) = *(cp+ii*8);
1523d4002b98SHong Zhang         *(vp+(ii+1)*8) = *(vp+ii*8);
1524d4002b98SHong Zhang       }
1525d4002b98SHong Zhang       a->rlen[row]++;
1526d4002b98SHong Zhang       *(cp+i*8) = col;
1527d4002b98SHong Zhang       *(vp+i*8) = value;
1528d4002b98SHong Zhang       a->nz++;
1529d4002b98SHong Zhang       A->nonzerostate++;
1530d4002b98SHong Zhang       low = i+1; high++; nrow++;
1531d4002b98SHong Zhang noinsert:;
1532d4002b98SHong Zhang     }
1533d4002b98SHong Zhang     a->rlen[row] = nrow;
1534d4002b98SHong Zhang   }
1535d4002b98SHong Zhang   PetscFunctionReturn(0);
1536d4002b98SHong Zhang }
1537d4002b98SHong Zhang 
1538d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str)
1539d4002b98SHong Zhang {
1540d4002b98SHong Zhang   PetscErrorCode ierr;
1541d4002b98SHong Zhang 
1542d4002b98SHong Zhang   PetscFunctionBegin;
1543d4002b98SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
1544d4002b98SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
1545d4002b98SHong Zhang     Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1546d4002b98SHong Zhang     Mat_SeqSELL *b=(Mat_SeqSELL*)B->data;
1547d4002b98SHong Zhang 
1548d4002b98SHong Zhang     if (a->sliidx[a->totalslices] != b->sliidx[b->totalslices]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
1549d4002b98SHong Zhang     ierr = PetscMemcpy(b->val,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1550d4002b98SHong Zhang   } else {
1551d4002b98SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1552d4002b98SHong Zhang   }
1553d4002b98SHong Zhang   PetscFunctionReturn(0);
1554d4002b98SHong Zhang }
1555d4002b98SHong Zhang 
1556d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A)
1557d4002b98SHong Zhang {
1558d4002b98SHong Zhang   PetscErrorCode ierr;
1559d4002b98SHong Zhang 
1560d4002b98SHong Zhang   PetscFunctionBegin;
1561d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,0);CHKERRQ(ierr);
1562d4002b98SHong Zhang   PetscFunctionReturn(0);
1563d4002b98SHong Zhang }
1564d4002b98SHong Zhang 
1565d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[])
1566d4002b98SHong Zhang {
1567d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1568d4002b98SHong Zhang 
1569d4002b98SHong Zhang   PetscFunctionBegin;
1570d4002b98SHong Zhang   *array = a->val;
1571d4002b98SHong Zhang   PetscFunctionReturn(0);
1572d4002b98SHong Zhang }
1573d4002b98SHong Zhang 
1574d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[])
1575d4002b98SHong Zhang {
1576d4002b98SHong Zhang   PetscFunctionBegin;
1577d4002b98SHong Zhang   PetscFunctionReturn(0);
1578d4002b98SHong Zhang }
1579d4002b98SHong Zhang 
1580d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A)
1581d4002b98SHong Zhang {
1582d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1583d4002b98SHong Zhang   PetscInt    i;
1584d4002b98SHong Zhang   MatScalar   *aval=a->val;
1585d4002b98SHong Zhang 
1586d4002b98SHong Zhang   PetscFunctionBegin;
1587d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]);
1588d4002b98SHong Zhang   PetscFunctionReturn(0);
1589d4002b98SHong Zhang }
1590d4002b98SHong Zhang 
1591d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A)
1592d4002b98SHong Zhang {
1593d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1594d4002b98SHong Zhang   PetscInt       i;
1595d4002b98SHong Zhang   MatScalar      *aval=a->val;
1596d4002b98SHong Zhang   PetscErrorCode ierr;
1597d4002b98SHong Zhang 
1598d4002b98SHong Zhang   PetscFunctionBegin;
1599d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]);
1600d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
1601d4002b98SHong Zhang   PetscFunctionReturn(0);
1602d4002b98SHong Zhang }
1603d4002b98SHong Zhang 
1604d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha)
1605d4002b98SHong Zhang {
1606d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)inA->data;
1607d4002b98SHong Zhang   MatScalar      *aval=a->val;
1608d4002b98SHong Zhang   PetscScalar    oalpha=alpha;
1609d4002b98SHong Zhang   PetscBLASInt   one=1,size;
1610d4002b98SHong Zhang   PetscErrorCode ierr;
1611d4002b98SHong Zhang 
1612d4002b98SHong Zhang   PetscFunctionBegin;
1613d4002b98SHong Zhang   ierr = PetscBLASIntCast(a->sliidx[a->totalslices],&size);CHKERRQ(ierr);
1614d4002b98SHong Zhang   PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one));
1615d4002b98SHong Zhang   ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1616d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(inA);CHKERRQ(ierr);
1617d4002b98SHong Zhang   PetscFunctionReturn(0);
1618d4002b98SHong Zhang }
1619d4002b98SHong Zhang 
1620d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a)
1621d4002b98SHong Zhang {
1622d4002b98SHong Zhang   Mat_SeqSELL    *y=(Mat_SeqSELL*)Y->data;
1623d4002b98SHong Zhang   PetscErrorCode ierr;
1624d4002b98SHong Zhang 
1625d4002b98SHong Zhang   PetscFunctionBegin;
1626d4002b98SHong Zhang   if (!Y->preallocated || !y->nz) {
1627d4002b98SHong Zhang     ierr = MatSeqSELLSetPreallocation(Y,1,NULL);CHKERRQ(ierr);
1628d4002b98SHong Zhang   }
1629d4002b98SHong Zhang   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
1630d4002b98SHong Zhang   PetscFunctionReturn(0);
1631d4002b98SHong Zhang }
1632d4002b98SHong Zhang 
1633d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1634d4002b98SHong Zhang {
1635d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1636d4002b98SHong Zhang   PetscScalar       *x,sum,*t;
1637d4002b98SHong Zhang   const MatScalar   *idiag=0,*mdiag;
1638d4002b98SHong Zhang   const PetscScalar *b,*xb;
1639d4002b98SHong Zhang   PetscInt          n,m=A->rmap->n,i,j,shift;
1640d4002b98SHong Zhang   const PetscInt    *diag;
1641d4002b98SHong Zhang   PetscErrorCode    ierr;
1642d4002b98SHong Zhang 
1643d4002b98SHong Zhang   PetscFunctionBegin;
1644d4002b98SHong Zhang   its = its*lits;
1645d4002b98SHong Zhang 
1646d4002b98SHong Zhang   if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */
1647d4002b98SHong Zhang   if (!a->idiagvalid) {ierr = MatInvertDiagonal_SeqSELL(A,omega,fshift);CHKERRQ(ierr);}
1648d4002b98SHong Zhang   a->fshift = fshift;
1649d4002b98SHong Zhang   a->omega  = omega;
1650d4002b98SHong Zhang 
1651d4002b98SHong Zhang   diag  = a->diag;
1652d4002b98SHong Zhang   t     = a->ssor_work;
1653d4002b98SHong Zhang   idiag = a->idiag;
1654d4002b98SHong Zhang   mdiag = a->mdiag;
1655d4002b98SHong Zhang 
1656d4002b98SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1657d4002b98SHong Zhang   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
1658d4002b98SHong Zhang   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
1659d4002b98SHong Zhang   if (flag == SOR_APPLY_UPPER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented");
1660d4002b98SHong Zhang   if (flag == SOR_APPLY_LOWER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented");
1661d4002b98SHong Zhang   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
1662d4002b98SHong Zhang 
1663d4002b98SHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
1664d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1665d4002b98SHong Zhang       for (i=0; i<m; i++) {
1666d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1667d4002b98SHong Zhang         sum   = b[i];
1668d4002b98SHong Zhang         n     = (diag[i]-shift)/8;
1669d4002b98SHong Zhang         for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1670d4002b98SHong Zhang         t[i]  = sum;
1671d4002b98SHong Zhang         x[i]  = sum*idiag[i];
1672d4002b98SHong Zhang       }
1673d4002b98SHong Zhang       xb   = t;
1674d4002b98SHong Zhang       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1675d4002b98SHong Zhang     } else xb = b;
1676d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1677d4002b98SHong Zhang       for (i=m-1; i>=0; i--) {
1678d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1679d4002b98SHong Zhang         sum   = xb[i];
1680d4002b98SHong Zhang         n     = a->rlen[i]-(diag[i]-shift)/8-1;
1681d4002b98SHong Zhang         for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1682d4002b98SHong Zhang         if (xb == b) {
1683d4002b98SHong Zhang           x[i] = sum*idiag[i];
1684d4002b98SHong Zhang         } else {
1685d4002b98SHong Zhang           x[i] = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1686d4002b98SHong Zhang         }
1687d4002b98SHong Zhang       }
1688d4002b98SHong Zhang       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */
1689d4002b98SHong Zhang     }
1690d4002b98SHong Zhang     its--;
1691d4002b98SHong Zhang   }
1692d4002b98SHong Zhang   while (its--) {
1693d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1694d4002b98SHong Zhang       for (i=0; i<m; i++) {
1695d4002b98SHong Zhang         /* lower */
1696d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1697d4002b98SHong Zhang         sum   = b[i];
1698d4002b98SHong Zhang         n     = (diag[i]-shift)/8;
1699d4002b98SHong Zhang         for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1700d4002b98SHong Zhang         t[i]  = sum;             /* save application of the lower-triangular part */
1701d4002b98SHong Zhang         /* upper */
1702d4002b98SHong Zhang         n     = a->rlen[i]-(diag[i]-shift)/8-1;
1703d4002b98SHong Zhang         for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1704d4002b98SHong Zhang         x[i]  = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1705d4002b98SHong Zhang       }
1706d4002b98SHong Zhang       xb   = t;
1707d4002b98SHong Zhang       ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
1708d4002b98SHong Zhang     } else xb = b;
1709d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1710d4002b98SHong Zhang       for (i=m-1; i>=0; i--) {
1711d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1712d4002b98SHong Zhang         sum = xb[i];
1713d4002b98SHong Zhang         if (xb == b) {
1714d4002b98SHong Zhang           /* whole matrix (no checkpointing available) */
1715d4002b98SHong Zhang           n     = a->rlen[i];
1716d4002b98SHong Zhang           for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1717d4002b98SHong Zhang           x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i];
1718d4002b98SHong Zhang         } else { /* lower-triangular part has been saved, so only apply upper-triangular */
1719d4002b98SHong Zhang           n     = a->rlen[i]-(diag[i]-shift)/8-1;
1720d4002b98SHong Zhang           for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1721d4002b98SHong Zhang           x[i]  = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1722d4002b98SHong Zhang         }
1723d4002b98SHong Zhang       }
1724d4002b98SHong Zhang       if (xb == b) {
1725d4002b98SHong Zhang         ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
1726d4002b98SHong Zhang       } else {
1727d4002b98SHong Zhang         ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */
1728d4002b98SHong Zhang       }
1729d4002b98SHong Zhang     }
1730d4002b98SHong Zhang   }
1731d4002b98SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1732d4002b98SHong Zhang   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
1733d4002b98SHong Zhang   PetscFunctionReturn(0);
1734d4002b98SHong Zhang }
1735d4002b98SHong Zhang 
1736d4002b98SHong Zhang /* -------------------------------------------------------------------*/
1737d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL,
17386108893eSStefano Zampini                                        MatGetRow_SeqSELL,
17396108893eSStefano Zampini                                        MatRestoreRow_SeqSELL,
1740d4002b98SHong Zhang                                        MatMult_SeqSELL,
1741d4002b98SHong Zhang                                /* 4*/  MatMultAdd_SeqSELL,
1742d4002b98SHong Zhang                                        MatMultTranspose_SeqSELL,
1743d4002b98SHong Zhang                                        MatMultTransposeAdd_SeqSELL,
1744d4002b98SHong Zhang                                        0,
1745d4002b98SHong Zhang                                        0,
1746d4002b98SHong Zhang                                        0,
1747d4002b98SHong Zhang                                /* 10*/ 0,
1748d4002b98SHong Zhang                                        0,
1749d4002b98SHong Zhang                                        0,
1750d4002b98SHong Zhang                                        MatSOR_SeqSELL,
1751d4002b98SHong Zhang                                        0,
1752d4002b98SHong Zhang                                /* 15*/ MatGetInfo_SeqSELL,
1753d4002b98SHong Zhang                                        MatEqual_SeqSELL,
1754d4002b98SHong Zhang                                        MatGetDiagonal_SeqSELL,
1755d4002b98SHong Zhang                                        MatDiagonalScale_SeqSELL,
1756d4002b98SHong Zhang                                        0,
1757d4002b98SHong Zhang                                /* 20*/ 0,
1758d4002b98SHong Zhang                                        MatAssemblyEnd_SeqSELL,
1759d4002b98SHong Zhang                                        MatSetOption_SeqSELL,
1760d4002b98SHong Zhang                                        MatZeroEntries_SeqSELL,
1761d4002b98SHong Zhang                                /* 24*/ 0,
1762d4002b98SHong Zhang                                        0,
1763d4002b98SHong Zhang                                        0,
1764d4002b98SHong Zhang                                        0,
1765d4002b98SHong Zhang                                        0,
1766d4002b98SHong Zhang                                /* 29*/ MatSetUp_SeqSELL,
1767d4002b98SHong Zhang                                        0,
1768d4002b98SHong Zhang                                        0,
1769d4002b98SHong Zhang                                        0,
1770d4002b98SHong Zhang                                        0,
1771d4002b98SHong Zhang                                /* 34*/ MatDuplicate_SeqSELL,
1772d4002b98SHong Zhang                                        0,
1773d4002b98SHong Zhang                                        0,
1774d4002b98SHong Zhang                                        0,
1775d4002b98SHong Zhang                                        0,
1776d4002b98SHong Zhang                                /* 39*/ 0,
1777d4002b98SHong Zhang                                        0,
1778d4002b98SHong Zhang                                        0,
1779d4002b98SHong Zhang                                        MatGetValues_SeqSELL,
1780d4002b98SHong Zhang                                        MatCopy_SeqSELL,
1781d4002b98SHong Zhang                                /* 44*/ 0,
1782d4002b98SHong Zhang                                        MatScale_SeqSELL,
1783d4002b98SHong Zhang                                        MatShift_SeqSELL,
1784d4002b98SHong Zhang                                        0,
1785d4002b98SHong Zhang                                        0,
1786d4002b98SHong Zhang                                /* 49*/ 0,
1787d4002b98SHong Zhang                                        0,
1788d4002b98SHong Zhang                                        0,
1789d4002b98SHong Zhang                                        0,
1790d4002b98SHong Zhang                                        0,
1791d4002b98SHong Zhang                                /* 54*/ MatFDColoringCreate_SeqXAIJ,
1792d4002b98SHong Zhang                                        0,
1793d4002b98SHong Zhang                                        0,
1794d4002b98SHong Zhang                                        0,
1795d4002b98SHong Zhang                                        0,
1796d4002b98SHong Zhang                                /* 59*/ 0,
1797d4002b98SHong Zhang                                        MatDestroy_SeqSELL,
1798d4002b98SHong Zhang                                        MatView_SeqSELL,
1799d4002b98SHong Zhang                                        0,
1800d4002b98SHong Zhang                                        0,
1801d4002b98SHong Zhang                                /* 64*/ 0,
1802d4002b98SHong Zhang                                        0,
1803d4002b98SHong Zhang                                        0,
1804d4002b98SHong Zhang                                        0,
1805d4002b98SHong Zhang                                        0,
1806d4002b98SHong Zhang                                /* 69*/ 0,
1807d4002b98SHong Zhang                                        0,
1808d4002b98SHong Zhang                                        0,
1809d4002b98SHong Zhang                                        0,
1810d4002b98SHong Zhang                                        0,
1811d4002b98SHong Zhang                                /* 74*/ 0,
1812d4002b98SHong Zhang                                        MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */
1813d4002b98SHong Zhang                                        0,
1814d4002b98SHong Zhang                                        0,
1815d4002b98SHong Zhang                                        0,
1816d4002b98SHong Zhang                                /* 79*/ 0,
1817d4002b98SHong Zhang                                        0,
1818d4002b98SHong Zhang                                        0,
1819d4002b98SHong Zhang                                        0,
1820d4002b98SHong Zhang                                        0,
1821d4002b98SHong Zhang                                /* 84*/ 0,
1822d4002b98SHong Zhang                                        0,
1823d4002b98SHong Zhang                                        0,
1824d4002b98SHong Zhang                                        0,
1825d4002b98SHong Zhang                                        0,
1826d4002b98SHong Zhang                                /* 89*/ 0,
1827d4002b98SHong Zhang                                        0,
1828d4002b98SHong Zhang                                        0,
1829d4002b98SHong Zhang                                        0,
1830d4002b98SHong Zhang                                        0,
1831d4002b98SHong Zhang                                /* 94*/ 0,
1832d4002b98SHong Zhang                                        0,
1833d4002b98SHong Zhang                                        0,
1834d4002b98SHong Zhang                                        0,
1835d4002b98SHong Zhang                                        0,
1836d4002b98SHong Zhang                                /* 99*/ 0,
1837d4002b98SHong Zhang                                        0,
1838d4002b98SHong Zhang                                        0,
1839d4002b98SHong Zhang                                        MatConjugate_SeqSELL,
1840d4002b98SHong Zhang                                        0,
1841d4002b98SHong Zhang                                /*104*/ 0,
1842d4002b98SHong Zhang                                        0,
1843d4002b98SHong Zhang                                        0,
1844d4002b98SHong Zhang                                        0,
1845d4002b98SHong Zhang                                        0,
1846d4002b98SHong Zhang                                /*109*/ 0,
1847d4002b98SHong Zhang                                        0,
1848d4002b98SHong Zhang                                        0,
1849d4002b98SHong Zhang                                        0,
1850d4002b98SHong Zhang                                        MatMissingDiagonal_SeqSELL,
1851d4002b98SHong Zhang                                /*114*/ 0,
1852d4002b98SHong Zhang                                        0,
1853d4002b98SHong Zhang                                        0,
1854d4002b98SHong Zhang                                        0,
1855d4002b98SHong Zhang                                        0,
1856d4002b98SHong Zhang                                /*119*/ 0,
1857d4002b98SHong Zhang                                        0,
1858d4002b98SHong Zhang                                        0,
1859d4002b98SHong Zhang                                        0,
1860d4002b98SHong Zhang                                        0,
1861d4002b98SHong Zhang                                /*124*/ 0,
1862d4002b98SHong Zhang                                        0,
1863d4002b98SHong Zhang                                        0,
1864d4002b98SHong Zhang                                        0,
1865d4002b98SHong Zhang                                        0,
1866d4002b98SHong Zhang                                /*129*/ 0,
1867d4002b98SHong Zhang                                        0,
1868d4002b98SHong Zhang                                        0,
1869d4002b98SHong Zhang                                        0,
1870d4002b98SHong Zhang                                        0,
1871d4002b98SHong Zhang                                /*134*/ 0,
1872d4002b98SHong Zhang                                        0,
1873d4002b98SHong Zhang                                        0,
1874d4002b98SHong Zhang                                        0,
1875d4002b98SHong Zhang                                        0,
1876d4002b98SHong Zhang                                /*139*/ 0,
1877d4002b98SHong Zhang                                        0,
1878d4002b98SHong Zhang                                        0,
1879d4002b98SHong Zhang                                        MatFDColoringSetUp_SeqXAIJ,
1880d4002b98SHong Zhang                                        0,
1881d4002b98SHong Zhang                                 /*144*/0
1882d4002b98SHong Zhang };
1883d4002b98SHong Zhang 
1884d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat)
1885d4002b98SHong Zhang {
1886d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)mat->data;
1887d4002b98SHong Zhang   PetscErrorCode ierr;
1888d4002b98SHong Zhang 
1889d4002b98SHong Zhang   PetscFunctionBegin;
1890d4002b98SHong Zhang   if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1891d4002b98SHong Zhang 
1892d4002b98SHong Zhang   /* allocate space for values if not already there */
1893d4002b98SHong Zhang   if (!a->saved_values) {
1894d4002b98SHong Zhang     ierr = PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values);CHKERRQ(ierr);
1895d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar));CHKERRQ(ierr);
1896d4002b98SHong Zhang   }
1897d4002b98SHong Zhang 
1898d4002b98SHong Zhang   /* copy values over */
1899d4002b98SHong Zhang   ierr = PetscMemcpy(a->saved_values,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1900d4002b98SHong Zhang   PetscFunctionReturn(0);
1901d4002b98SHong Zhang }
1902d4002b98SHong Zhang 
1903d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat)
1904d4002b98SHong Zhang {
1905d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)mat->data;
1906d4002b98SHong Zhang   PetscErrorCode ierr;
1907d4002b98SHong Zhang 
1908d4002b98SHong Zhang   PetscFunctionBegin;
1909d4002b98SHong Zhang   if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1910d4002b98SHong Zhang   if (!a->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
1911d4002b98SHong Zhang   /* copy values over */
1912d4002b98SHong Zhang   ierr = PetscMemcpy(a->val,a->saved_values,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1913d4002b98SHong Zhang   PetscFunctionReturn(0);
1914d4002b98SHong Zhang }
1915d4002b98SHong Zhang 
1916d4002b98SHong Zhang /*@C
1917d4002b98SHong Zhang  MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray()
1918d4002b98SHong Zhang 
1919d4002b98SHong Zhang  Not Collective
1920d4002b98SHong Zhang 
1921d4002b98SHong Zhang  Input Parameters:
1922d4002b98SHong Zhang  .  mat - a MATSEQSELL matrix
1923d4002b98SHong Zhang  .  array - pointer to the data
1924d4002b98SHong Zhang 
1925d4002b98SHong Zhang  Level: intermediate
1926d4002b98SHong Zhang 
1927d4002b98SHong Zhang  .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90()
1928d4002b98SHong Zhang  @*/
1929d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array)
1930d4002b98SHong Zhang {
1931d4002b98SHong Zhang   PetscErrorCode ierr;
1932d4002b98SHong Zhang 
1933d4002b98SHong Zhang   PetscFunctionBegin;
1934d4002b98SHong Zhang   ierr = PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
1935d4002b98SHong Zhang   PetscFunctionReturn(0);
1936d4002b98SHong Zhang }
1937d4002b98SHong Zhang 
1938d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B)
1939d4002b98SHong Zhang {
1940d4002b98SHong Zhang   Mat_SeqSELL    *b;
1941d4002b98SHong Zhang   PetscMPIInt    size;
1942d4002b98SHong Zhang   PetscErrorCode ierr;
1943d4002b98SHong Zhang 
1944d4002b98SHong Zhang   PetscFunctionBegin;
1945d4002b98SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
1946d4002b98SHong Zhang   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1");
1947d4002b98SHong Zhang 
1948d4002b98SHong Zhang   ierr = PetscNewLog(B,&b);CHKERRQ(ierr);
1949d4002b98SHong Zhang 
1950d4002b98SHong Zhang   B->data = (void*)b;
1951d4002b98SHong Zhang 
1952d4002b98SHong Zhang   ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1953d4002b98SHong Zhang 
1954d4002b98SHong Zhang   b->row                = 0;
1955d4002b98SHong Zhang   b->col                = 0;
1956d4002b98SHong Zhang   b->icol               = 0;
1957d4002b98SHong Zhang   b->reallocs           = 0;
1958d4002b98SHong Zhang   b->ignorezeroentries  = PETSC_FALSE;
1959d4002b98SHong Zhang   b->roworiented        = PETSC_TRUE;
1960d4002b98SHong Zhang   b->nonew              = 0;
1961d4002b98SHong Zhang   b->diag               = 0;
1962d4002b98SHong Zhang   b->solve_work         = 0;
1963d4002b98SHong Zhang   B->spptr              = 0;
1964d4002b98SHong Zhang   b->saved_values       = 0;
1965d4002b98SHong Zhang   b->idiag              = 0;
1966d4002b98SHong Zhang   b->mdiag              = 0;
1967d4002b98SHong Zhang   b->ssor_work          = 0;
1968d4002b98SHong Zhang   b->omega              = 1.0;
1969d4002b98SHong Zhang   b->fshift             = 0.0;
1970d4002b98SHong Zhang   b->idiagvalid         = PETSC_FALSE;
1971d4002b98SHong Zhang   b->ibdiagvalid        = PETSC_FALSE;
1972d4002b98SHong Zhang   b->keepnonzeropattern = PETSC_FALSE;
1973d4002b98SHong Zhang 
1974d4002b98SHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL);CHKERRQ(ierr);
1975d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL);CHKERRQ(ierr);
1976d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL);CHKERRQ(ierr);
1977d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL);CHKERRQ(ierr);
1978d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL);CHKERRQ(ierr);
1979d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL);CHKERRQ(ierr);
1980d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ);CHKERRQ(ierr);
1981d4002b98SHong Zhang   PetscFunctionReturn(0);
1982d4002b98SHong Zhang }
1983d4002b98SHong Zhang 
1984d4002b98SHong Zhang /*
1985d4002b98SHong Zhang  Given a matrix generated with MatGetFactor() duplicates all the information in A into B
1986d4002b98SHong Zhang  */
1987d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace)
1988d4002b98SHong Zhang {
1989d4002b98SHong Zhang   Mat_SeqSELL    *c,*a=(Mat_SeqSELL*)A->data;
1990d4002b98SHong Zhang   PetscInt       i,m=A->rmap->n;
1991d4002b98SHong Zhang   PetscInt       totalslices=a->totalslices;
1992d4002b98SHong Zhang   PetscErrorCode ierr;
1993d4002b98SHong Zhang 
1994d4002b98SHong Zhang   PetscFunctionBegin;
1995d4002b98SHong Zhang   c = (Mat_SeqSELL*)C->data;
1996d4002b98SHong Zhang 
1997d4002b98SHong Zhang   C->factortype = A->factortype;
1998d4002b98SHong Zhang   c->row        = 0;
1999d4002b98SHong Zhang   c->col        = 0;
2000d4002b98SHong Zhang   c->icol       = 0;
2001d4002b98SHong Zhang   c->reallocs   = 0;
2002d4002b98SHong Zhang 
2003d4002b98SHong Zhang   C->assembled = PETSC_TRUE;
2004d4002b98SHong Zhang 
2005d4002b98SHong Zhang   ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr);
2006d4002b98SHong Zhang   ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr);
2007d4002b98SHong Zhang 
2008d4002b98SHong Zhang   ierr = PetscMalloc1(8*totalslices,&c->rlen);CHKERRQ(ierr);
2009d4002b98SHong Zhang   ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr);
2010d4002b98SHong Zhang   ierr = PetscMalloc1(totalslices+1,&c->sliidx);CHKERRQ(ierr);
2011d4002b98SHong Zhang   ierr = PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr);
2012d4002b98SHong Zhang 
2013d4002b98SHong Zhang   for (i=0; i<m; i++) c->rlen[i] = a->rlen[i];
2014d4002b98SHong Zhang   for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i];
2015d4002b98SHong Zhang 
2016d4002b98SHong Zhang   /* allocate the matrix space */
2017d4002b98SHong Zhang   if (mallocmatspace) {
2018d4002b98SHong Zhang     ierr = PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx);CHKERRQ(ierr);
2019d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
2020d4002b98SHong Zhang 
2021d4002b98SHong Zhang     c->singlemalloc = PETSC_TRUE;
2022d4002b98SHong Zhang 
2023d4002b98SHong Zhang     if (m > 0) {
2024d4002b98SHong Zhang       ierr = PetscMemcpy(c->colidx,a->colidx,(a->maxallocmat)*sizeof(PetscInt));CHKERRQ(ierr);
2025d4002b98SHong Zhang       if (cpvalues == MAT_COPY_VALUES) {
2026d4002b98SHong Zhang         ierr = PetscMemcpy(c->val,a->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr);
2027d4002b98SHong Zhang       } else {
2028d4002b98SHong Zhang         ierr = PetscMemzero(c->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr);
2029d4002b98SHong Zhang       }
2030d4002b98SHong Zhang     }
2031d4002b98SHong Zhang   }
2032d4002b98SHong Zhang 
2033d4002b98SHong Zhang   c->ignorezeroentries = a->ignorezeroentries;
2034d4002b98SHong Zhang   c->roworiented       = a->roworiented;
2035d4002b98SHong Zhang   c->nonew             = a->nonew;
2036d4002b98SHong Zhang   if (a->diag) {
2037d4002b98SHong Zhang     ierr = PetscMalloc1(m,&c->diag);CHKERRQ(ierr);
2038d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr);
2039d4002b98SHong Zhang     for (i=0; i<m; i++) {
2040d4002b98SHong Zhang       c->diag[i] = a->diag[i];
2041d4002b98SHong Zhang     }
2042d4002b98SHong Zhang   } else c->diag = 0;
2043d4002b98SHong Zhang 
2044d4002b98SHong Zhang   c->solve_work         = 0;
2045d4002b98SHong Zhang   c->saved_values       = 0;
2046d4002b98SHong Zhang   c->idiag              = 0;
2047d4002b98SHong Zhang   c->ssor_work          = 0;
2048d4002b98SHong Zhang   c->keepnonzeropattern = a->keepnonzeropattern;
2049d4002b98SHong Zhang   c->free_val           = PETSC_TRUE;
2050d4002b98SHong Zhang   c->free_colidx        = PETSC_TRUE;
2051d4002b98SHong Zhang 
2052d4002b98SHong Zhang   c->maxallocmat  = a->maxallocmat;
2053d4002b98SHong Zhang   c->maxallocrow  = a->maxallocrow;
2054d4002b98SHong Zhang   c->rlenmax      = a->rlenmax;
2055d4002b98SHong Zhang   c->nz           = a->nz;
2056d4002b98SHong Zhang   C->preallocated = PETSC_TRUE;
2057d4002b98SHong Zhang 
2058d4002b98SHong Zhang   c->nonzerorowcnt = a->nonzerorowcnt;
2059d4002b98SHong Zhang   C->nonzerostate  = A->nonzerostate;
2060d4002b98SHong Zhang 
2061d4002b98SHong Zhang   ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
2062d4002b98SHong Zhang   PetscFunctionReturn(0);
2063d4002b98SHong Zhang }
2064d4002b98SHong Zhang 
2065d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B)
2066d4002b98SHong Zhang {
2067d4002b98SHong Zhang   PetscErrorCode ierr;
2068d4002b98SHong Zhang 
2069d4002b98SHong Zhang   PetscFunctionBegin;
2070d4002b98SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr);
2071d4002b98SHong Zhang   ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
2072d4002b98SHong Zhang   if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) {
2073d4002b98SHong Zhang     ierr = MatSetBlockSizesFromMats(*B,A,A);CHKERRQ(ierr);
2074d4002b98SHong Zhang   }
2075d4002b98SHong Zhang   ierr = MatSetType(*B,((PetscObject)A)->type_name);CHKERRQ(ierr);
2076d4002b98SHong Zhang   ierr = MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr);
2077d4002b98SHong Zhang   PetscFunctionReturn(0);
2078d4002b98SHong Zhang }
2079d4002b98SHong Zhang 
2080d4002b98SHong Zhang /*@C
2081d4002b98SHong Zhang  MatCreateSeqSELL - Creates a sparse matrix in SELL format.
2082d4002b98SHong Zhang 
2083d4002b98SHong Zhang  Collective on MPI_Comm
2084d4002b98SHong Zhang 
2085d4002b98SHong Zhang  Input Parameters:
2086d4002b98SHong Zhang  +  comm - MPI communicator, set to PETSC_COMM_SELF
2087d4002b98SHong Zhang  .  m - number of rows
2088d4002b98SHong Zhang  .  n - number of columns
2089d4002b98SHong Zhang  .  rlenmax - maximum number of nonzeros in a row
2090d4002b98SHong Zhang  -  rlen - array containing the number of nonzeros in the various rows
2091d4002b98SHong Zhang  (possibly different for each row) or NULL
2092d4002b98SHong Zhang 
2093d4002b98SHong Zhang  Output Parameter:
2094d4002b98SHong Zhang  .  A - the matrix
2095d4002b98SHong Zhang 
2096d4002b98SHong Zhang  It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2097d4002b98SHong Zhang  MatXXXXSetPreallocation() paradgm instead of this routine directly.
2098d4002b98SHong Zhang  [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation]
2099d4002b98SHong Zhang 
2100d4002b98SHong Zhang  Notes:
2101d4002b98SHong Zhang  If nnz is given then nz is ignored
2102d4002b98SHong Zhang 
2103d4002b98SHong Zhang  Specify the preallocated storage with either rlenmax or rlen (not both).
2104d4002b98SHong Zhang  Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory
2105d4002b98SHong Zhang  allocation.  For large problems you MUST preallocate memory or you
2106d4002b98SHong Zhang  will get TERRIBLE performance, see the users' manual chapter on matrices.
2107d4002b98SHong Zhang 
2108d4002b98SHong Zhang  Level: intermediate
2109d4002b98SHong Zhang 
2110d4002b98SHong Zhang  .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatCreateSeqSELLWithArrays()
2111d4002b98SHong Zhang 
2112d4002b98SHong Zhang  @*/
2113d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A)
2114d4002b98SHong Zhang {
2115d4002b98SHong Zhang   PetscErrorCode ierr;
2116d4002b98SHong Zhang 
2117d4002b98SHong Zhang   PetscFunctionBegin;
2118d4002b98SHong Zhang   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2119d4002b98SHong Zhang   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
2120d4002b98SHong Zhang   ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr);
2121d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen);CHKERRQ(ierr);
2122d4002b98SHong Zhang   PetscFunctionReturn(0);
2123d4002b98SHong Zhang }
2124d4002b98SHong Zhang 
2125d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg)
2126d4002b98SHong Zhang {
2127d4002b98SHong Zhang   Mat_SeqSELL     *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data;
2128d4002b98SHong Zhang   PetscInt       totalslices=a->totalslices;
2129d4002b98SHong Zhang   PetscErrorCode ierr;
2130d4002b98SHong Zhang 
2131d4002b98SHong Zhang   PetscFunctionBegin;
2132d4002b98SHong Zhang   /* If the  matrix dimensions are not equal,or no of nonzeros */
2133d4002b98SHong Zhang   if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) {
2134d4002b98SHong Zhang     *flg = PETSC_FALSE;
2135d4002b98SHong Zhang     PetscFunctionReturn(0);
2136d4002b98SHong Zhang   }
2137d4002b98SHong Zhang   /* if the a->colidx are the same */
2138d4002b98SHong Zhang   ierr = PetscMemcmp(a->colidx,b->colidx,a->sliidx[totalslices]*sizeof(PetscInt),flg);CHKERRQ(ierr);
2139d4002b98SHong Zhang   if (!*flg) PetscFunctionReturn(0);
2140d4002b98SHong Zhang   /* if a->val are the same */
2141d4002b98SHong Zhang   ierr = PetscMemcmp(a->val,b->val,a->sliidx[totalslices]*sizeof(PetscScalar),flg);CHKERRQ(ierr);
2142d4002b98SHong Zhang   PetscFunctionReturn(0);
2143d4002b98SHong Zhang }
2144d4002b98SHong Zhang 
2145d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A)
2146d4002b98SHong Zhang {
2147d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
2148d4002b98SHong Zhang 
2149d4002b98SHong Zhang   PetscFunctionBegin;
2150d4002b98SHong Zhang   a->idiagvalid  = PETSC_FALSE;
2151d4002b98SHong Zhang   a->ibdiagvalid = PETSC_FALSE;
2152d4002b98SHong Zhang   PetscFunctionReturn(0);
2153d4002b98SHong Zhang }
2154d4002b98SHong Zhang 
2155d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A)
2156d4002b98SHong Zhang {
2157d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
2158d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
2159d4002b98SHong Zhang   PetscInt    i;
2160d4002b98SHong Zhang   PetscScalar *val = a->val;
2161d4002b98SHong Zhang 
2162d4002b98SHong Zhang   PetscFunctionBegin;
2163d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) {
2164d4002b98SHong Zhang     val[i] = PetscConj(val[i]);
2165d4002b98SHong Zhang   }
2166d4002b98SHong Zhang #else
2167d4002b98SHong Zhang   PetscFunctionBegin;
2168d4002b98SHong Zhang #endif
2169d4002b98SHong Zhang   PetscFunctionReturn(0);
2170d4002b98SHong Zhang }
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