1d4002b98SHong Zhang 2d4002b98SHong Zhang /* 3d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format. 4d4002b98SHong Zhang */ 5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/ 6d4002b98SHong Zhang #include <petscblaslapack.h> 7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h> 8d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) 9d4002b98SHong Zhang #include <immintrin.h> 10d4002b98SHong Zhang 11d4002b98SHong Zhang #if !defined(_MM_SCALE_8) 12d4002b98SHong Zhang #define _MM_SCALE_8 8 13d4002b98SHong Zhang #endif 14d4002b98SHong Zhang 15d4002b98SHong Zhang #if defined(__AVX512F__) 16d4002b98SHong Zhang /* these do not work 17d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx); 18d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval); 19d4002b98SHong Zhang */ 20d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 21d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \ 22d4002b98SHong Zhang vec_idx = _mm256_load_si256((__m256i const*)acolidx); \ 23d4002b98SHong Zhang vec_vals = _mm512_load_pd(aval); \ 24d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \ 25d4002b98SHong Zhang vec_y = _mm512_fmadd_pd(vec_x,vec_vals,vec_y); 26d4002b98SHong Zhang 27d4002b98SHong Zhang #endif 28d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */ 29d4002b98SHong Zhang 30d4002b98SHong Zhang /*@C 31d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance 32d4002b98SHong Zhang the user should preallocate the matrix storage by setting the parameter nz 33d4002b98SHong Zhang (or the array nnz). By setting these parameters accurately, performance 34d4002b98SHong Zhang during matrix assembly can be increased significantly. 35d4002b98SHong Zhang 36d4002b98SHong Zhang Collective on MPI_Comm 37d4002b98SHong Zhang 38d4002b98SHong Zhang Input Parameters: 39d4002b98SHong Zhang + B - The matrix 40d4002b98SHong Zhang . nz - number of nonzeros per row (same for all rows) 41d4002b98SHong Zhang - nnz - array containing the number of nonzeros in the various rows 42d4002b98SHong Zhang (possibly different for each row) or NULL 43d4002b98SHong Zhang 44d4002b98SHong Zhang Notes: 45d4002b98SHong Zhang If nnz is given then nz is ignored. 46d4002b98SHong Zhang 47d4002b98SHong Zhang Specify the preallocated storage with either nz or nnz (not both). 48d4002b98SHong Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 49d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 50d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 51d4002b98SHong Zhang 52d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 53d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 54d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 55d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 56d4002b98SHong Zhang 57d4002b98SHong Zhang Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix 58d4002b98SHong Zhang entries or columns indices. 59d4002b98SHong Zhang 60d4002b98SHong Zhang The maximum number of nonzeos in any row should be as accuate as possible. 61d4002b98SHong Zhang If it is underesitmated, you will get bad performance due to reallocation 62d4002b98SHong Zhang (MatSeqXSELLReallocateSELL). 63d4002b98SHong Zhang 64d4002b98SHong Zhang Level: intermediate 65d4002b98SHong Zhang 66d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo() 67d4002b98SHong Zhang 68d4002b98SHong Zhang @*/ 69d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[]) 70d4002b98SHong Zhang { 71d4002b98SHong Zhang PetscErrorCode ierr; 72d4002b98SHong Zhang 73d4002b98SHong Zhang PetscFunctionBegin; 74d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 75d4002b98SHong Zhang PetscValidType(B,1); 76d4002b98SHong Zhang ierr = PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen));CHKERRQ(ierr); 77d4002b98SHong Zhang PetscFunctionReturn(0); 78d4002b98SHong Zhang } 79d4002b98SHong Zhang 80d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[]) 81d4002b98SHong Zhang { 82d4002b98SHong Zhang Mat_SeqSELL *b; 83d4002b98SHong Zhang PetscInt i,j,totalslices; 84d4002b98SHong Zhang PetscBool skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE; 85d4002b98SHong Zhang PetscErrorCode ierr; 86d4002b98SHong Zhang 87d4002b98SHong Zhang PetscFunctionBegin; 88d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE; 89d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) { 90d4002b98SHong Zhang skipallocation = PETSC_TRUE; 91d4002b98SHong Zhang maxallocrow = 0; 92d4002b98SHong Zhang } 93d4002b98SHong Zhang 94d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 95d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 96d4002b98SHong Zhang 97d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */ 98d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5; 99d4002b98SHong Zhang if (maxallocrow < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %D",maxallocrow); 100d4002b98SHong Zhang if (rlen) { 101d4002b98SHong Zhang for (i=0; i<B->rmap->n; i++) { 102d4002b98SHong Zhang if (rlen[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %D value %D",i,rlen[i]); 103d4002b98SHong Zhang if (rlen[i] > B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %D value %D rowlength %D",i,rlen[i],B->cmap->n); 104d4002b98SHong Zhang } 105d4002b98SHong Zhang } 106d4002b98SHong Zhang 107d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 108d4002b98SHong Zhang 109d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 110d4002b98SHong Zhang 111d4002b98SHong Zhang totalslices = B->rmap->n/8+((B->rmap->n & 0x07)?1:0); /* ceil(n/8) */ 112d4002b98SHong Zhang b->totalslices = totalslices; 113d4002b98SHong Zhang if (!skipallocation) { 114d4002b98SHong Zhang if (B->rmap->n & 0x07) PetscInfo1(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %D)\n",B->rmap->n); 115d4002b98SHong Zhang 116d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */ 117d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&b->sliidx);CHKERRQ(ierr); 118d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 119d4002b98SHong Zhang } 120d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */ 121d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10; 122d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1; 123d4002b98SHong Zhang for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow; 124d4002b98SHong Zhang } else { 125d4002b98SHong Zhang maxallocrow = 0; 126d4002b98SHong Zhang b->sliidx[0] = 0; 127d4002b98SHong Zhang for (i=1; i<totalslices; i++) { 128d4002b98SHong Zhang b->sliidx[i] = 0; 129d4002b98SHong Zhang for (j=0;j<8;j++) { 130d4002b98SHong Zhang b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]); 131d4002b98SHong Zhang } 132d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i],maxallocrow); 133d4002b98SHong Zhang b->sliidx[i] = b->sliidx[i-1] + 8*b->sliidx[i]; 134d4002b98SHong Zhang } 135d4002b98SHong Zhang /* last slice */ 136d4002b98SHong Zhang b->sliidx[totalslices] = 0; 137d4002b98SHong Zhang for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]); 138d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow); 139d4002b98SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices]; 140d4002b98SHong Zhang } 141d4002b98SHong Zhang 142d4002b98SHong Zhang /* allocate space for val, colidx, rlen */ 143d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */ 144d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(B,&b->val,&b->colidx);CHKERRQ(ierr); 145d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */ 146d4002b98SHong Zhang ierr = PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx);CHKERRQ(ierr); 147d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 148d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */ 149d4002b98SHong Zhang ierr = PetscCalloc1(8*totalslices,&b->rlen);CHKERRQ(ierr); 150d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt));CHKERRQ(ierr); 151d4002b98SHong Zhang 152d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE; 153d4002b98SHong Zhang b->free_val = PETSC_TRUE; 154d4002b98SHong Zhang b->free_colidx = PETSC_TRUE; 155d4002b98SHong Zhang } else { 156d4002b98SHong Zhang b->free_val = PETSC_FALSE; 157d4002b98SHong Zhang b->free_colidx = PETSC_FALSE; 158d4002b98SHong Zhang } 159d4002b98SHong Zhang 160d4002b98SHong Zhang b->nz = 0; 161d4002b98SHong Zhang b->maxallocrow = maxallocrow; 162d4002b98SHong Zhang b->rlenmax = maxallocrow; 163d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices]; 164d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat; 165d4002b98SHong Zhang if (realalloc) { 166d4002b98SHong Zhang ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 167d4002b98SHong Zhang } 168d4002b98SHong Zhang PetscFunctionReturn(0); 169d4002b98SHong Zhang } 170d4002b98SHong Zhang 171d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 172d4002b98SHong Zhang { 173d4002b98SHong Zhang Mat B; 174d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 175d4002b98SHong Zhang PetscInt i,j,row; 176d4002b98SHong Zhang PetscBool isnonzero; 177d4002b98SHong Zhang PetscErrorCode ierr; 178d4002b98SHong Zhang 179d4002b98SHong Zhang PetscFunctionBegin; 180*ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 181*ad013a7bSRichard Tran Mills B = *newmat; 182*ad013a7bSRichard Tran Mills } else { 183d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 184d4002b98SHong Zhang ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 185d4002b98SHong Zhang ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 186d4002b98SHong Zhang ierr = MatSeqAIJSetPreallocation(B,0,a->rlen);CHKERRQ(ierr); 187d4002b98SHong Zhang ierr = MatSetOption(B,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 188*ad013a7bSRichard Tran Mills } 189d4002b98SHong Zhang 190d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 191d4002b98SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 192d4002b98SHong Zhang isnonzero = (PetscBool)((j-a->sliidx[i])/8 < a->rlen[8*i+row]); 193d4002b98SHong Zhang if (isnonzero) { 194d4002b98SHong Zhang ierr = MatSetValue(B,8*i+row,a->colidx[j],a->val[j],INSERT_VALUES);CHKERRQ(ierr); 195d4002b98SHong Zhang } 196d4002b98SHong Zhang } 197d4002b98SHong Zhang } 198d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 199d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 200d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 201d4002b98SHong Zhang 202d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 203d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 204d4002b98SHong Zhang } else { 205d4002b98SHong Zhang *newmat = B; 206d4002b98SHong Zhang } 207d4002b98SHong Zhang PetscFunctionReturn(0); 208d4002b98SHong Zhang } 209d4002b98SHong Zhang 210d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h> 211d4002b98SHong Zhang 212d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 213d4002b98SHong Zhang { 214d4002b98SHong Zhang Mat B; 215d4002b98SHong Zhang Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data; 216d4002b98SHong Zhang PetscInt *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols; 217d4002b98SHong Zhang const PetscInt *cols; 218d4002b98SHong Zhang const PetscScalar *vals; 219d4002b98SHong Zhang PetscErrorCode ierr; 220d4002b98SHong Zhang 221d4002b98SHong Zhang PetscFunctionBegin; 222d4002b98SHong Zhang if (A->rmap->bs > 1) { 223d4002b98SHong Zhang ierr = MatConvert_Basic(A,newtype,reuse,newmat);CHKERRQ(ierr); 224d4002b98SHong Zhang PetscFunctionReturn(0); 225d4002b98SHong Zhang } 226*ad013a7bSRichard Tran Mills 227*ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 228*ad013a7bSRichard Tran Mills B = *newmat; 229*ad013a7bSRichard Tran Mills } else { 230d4002b98SHong Zhang /* Can we just use ilen? */ 231d4002b98SHong Zhang ierr = PetscMalloc1(m,&rowlengths);CHKERRQ(ierr); 232d4002b98SHong Zhang for (i=0; i<m; i++) { 233d4002b98SHong Zhang rowlengths[i] = ai[i+1] - ai[i]; 234d4002b98SHong Zhang } 235d4002b98SHong Zhang 236d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 237d4002b98SHong Zhang ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr); 238d4002b98SHong Zhang ierr = MatSetType(B,MATSEQSELL);CHKERRQ(ierr); 239d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(B,0,rowlengths);CHKERRQ(ierr); 240d4002b98SHong Zhang ierr = PetscFree(rowlengths);CHKERRQ(ierr); 241*ad013a7bSRichard Tran Mills } 242d4002b98SHong Zhang 243d4002b98SHong Zhang ierr = MatSetOption(B,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr); 244d4002b98SHong Zhang 245d4002b98SHong Zhang for (row=0; row<m; row++) { 246d4002b98SHong Zhang ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 247d4002b98SHong Zhang ierr = MatSetValues(B,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 248d4002b98SHong Zhang ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 249d4002b98SHong Zhang } 250d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 251d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 252d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 253d4002b98SHong Zhang 254d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 255d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 256d4002b98SHong Zhang } else { 257d4002b98SHong Zhang *newmat = B; 258d4002b98SHong Zhang } 259d4002b98SHong Zhang PetscFunctionReturn(0); 260d4002b98SHong Zhang } 261d4002b98SHong Zhang 262d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy) 263d4002b98SHong Zhang { 264d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 265d4002b98SHong Zhang PetscScalar *y; 266d4002b98SHong Zhang const PetscScalar *x; 267d4002b98SHong Zhang const MatScalar *aval=a->val; 268d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 269d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 2707285fed1SHong Zhang PetscInt i,j; 271d4002b98SHong Zhang PetscErrorCode ierr; 272d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 273d4002b98SHong Zhang __m512d vec_x,vec_y,vec_vals; 274d4002b98SHong Zhang __m256i vec_idx; 275d4002b98SHong Zhang __mmask8 mask; 276d4002b98SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 277d4002b98SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 278d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 279d4002b98SHong Zhang __m128d vec_x_tmp; 280d4002b98SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 281d4002b98SHong Zhang MatScalar yval; 282d4002b98SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 283d4002b98SHong Zhang #else 284d4002b98SHong Zhang PetscScalar sum[8]; 285d4002b98SHong Zhang #endif 286d4002b98SHong Zhang 287d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 288d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 289d4002b98SHong Zhang #endif 290d4002b98SHong Zhang 291d4002b98SHong Zhang PetscFunctionBegin; 292d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 293d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 294d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 295d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 296d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 297d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 298d4002b98SHong Zhang 299d4002b98SHong Zhang vec_y = _mm512_setzero_pd(); 300d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd(); 301d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd(); 302d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd(); 303d4002b98SHong Zhang 30438efe8efSHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 305d4002b98SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 306d4002b98SHong Zhang case 3: 307d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 308d4002b98SHong Zhang acolidx += 8; aval += 8; 309d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 310d4002b98SHong Zhang acolidx += 8; aval += 8; 311d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 312d4002b98SHong Zhang acolidx += 8; aval += 8; 313d4002b98SHong Zhang j += 3; 314d4002b98SHong Zhang break; 315d4002b98SHong Zhang case 2: 316d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 317d4002b98SHong Zhang acolidx += 8; aval += 8; 318d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 319d4002b98SHong Zhang acolidx += 8; aval += 8; 320d4002b98SHong Zhang j += 2; 321d4002b98SHong Zhang break; 322d4002b98SHong Zhang case 1: 323d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 324d4002b98SHong Zhang acolidx += 8; aval += 8; 325d4002b98SHong Zhang j += 1; 326d4002b98SHong Zhang break; 327d4002b98SHong Zhang } 328d4002b98SHong Zhang #pragma novector 329d4002b98SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 330d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 331d4002b98SHong Zhang acolidx += 8; aval += 8; 332d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 333d4002b98SHong Zhang acolidx += 8; aval += 8; 334d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 335d4002b98SHong Zhang acolidx += 8; aval += 8; 336d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 337d4002b98SHong Zhang acolidx += 8; aval += 8; 338d4002b98SHong Zhang } 339d4002b98SHong Zhang 340d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 341d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 342d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 343d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 344d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 345d4002b98SHong Zhang _mm512_mask_store_pd(&y[8*i],mask,vec_y); 346d4002b98SHong Zhang } else { 347d4002b98SHong Zhang _mm512_store_pd(&y[8*i],vec_y); 348d4002b98SHong Zhang } 349d4002b98SHong Zhang } 350d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 351d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 352d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 353d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 354d4002b98SHong Zhang 355d4002b98SHong Zhang vec_y = _mm256_setzero_pd(); 356d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd(); 357d4002b98SHong Zhang 358d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 359d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 360d4002b98SHong Zhang rows_left = A->rmap->n - 8*i; 361d4002b98SHong Zhang for (r=0; r<rows_left; ++r) { 362d4002b98SHong Zhang yval = (MatScalar)0; 363d4002b98SHong Zhang row = 8*i + r; 364d4002b98SHong Zhang nnz_in_row = a->rlen[row]; 365d4002b98SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]]; 366d4002b98SHong Zhang y[row] = yval; 367d4002b98SHong Zhang } 368d4002b98SHong Zhang break; 369d4002b98SHong Zhang } 370d4002b98SHong Zhang 371d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 3727285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 373d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 374d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 375d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 376d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 377d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 378d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 379d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 380d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 381d4002b98SHong Zhang aval += 4; 382d4002b98SHong Zhang 383d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 384d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 385d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 386d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 387d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 388d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 389d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 390d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 391d4002b98SHong Zhang aval += 4; 392d4002b98SHong Zhang } 393d4002b98SHong Zhang 394d4002b98SHong Zhang _mm256_storeu_pd(y + i*8, vec_y); 395d4002b98SHong Zhang _mm256_storeu_pd(y + i*8 + 4, vec_y2); 396d4002b98SHong Zhang } 397d4002b98SHong Zhang #else 398d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 399d4002b98SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 400d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 401d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 402d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 403d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 404d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 405d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 406d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 407d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 408d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 409d4002b98SHong Zhang } 410d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 411d4002b98SHong Zhang for(j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j]; 412d4002b98SHong Zhang } else { 4137285fed1SHong Zhang for(j=0; j<8; j++) y[8*i+j] = sum[j]; 414d4002b98SHong Zhang } 415d4002b98SHong Zhang } 416d4002b98SHong Zhang #endif 417d4002b98SHong Zhang 418d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz-a->nonzerorowcnt);CHKERRQ(ierr); /* theoretical minimal FLOPs */ 419d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 420d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 421d4002b98SHong Zhang PetscFunctionReturn(0); 422d4002b98SHong Zhang } 423d4002b98SHong Zhang 424d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h> 425d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz) 426d4002b98SHong Zhang { 427d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 428d4002b98SHong Zhang PetscScalar *y,*z; 429d4002b98SHong Zhang const PetscScalar *x; 430d4002b98SHong Zhang const MatScalar *aval=a->val; 431d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 432d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 433d4002b98SHong Zhang PetscInt i,j; 434d4002b98SHong Zhang PetscErrorCode ierr; 435d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 4367285fed1SHong Zhang __m512d vec_x,vec_y,vec_vals; 437d4002b98SHong Zhang __m256i vec_idx; 438d4002b98SHong Zhang __mmask8 mask; 4397285fed1SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 4407285fed1SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 4417285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 4427285fed1SHong Zhang __m128d vec_x_tmp; 4437285fed1SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 4447285fed1SHong Zhang MatScalar yval; 4457285fed1SHong Zhang PetscInt r,row,nnz_in_row; 446d4002b98SHong Zhang #else 447d4002b98SHong Zhang PetscScalar sum[8]; 448d4002b98SHong Zhang #endif 449d4002b98SHong Zhang 450d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 451d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 452d4002b98SHong Zhang #endif 453d4002b98SHong Zhang 454d4002b98SHong Zhang PetscFunctionBegin; 455d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 456d4002b98SHong Zhang ierr = VecGetArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 457d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 4587285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 4597285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 4607285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 4617285fed1SHong Zhang 462d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 463d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 4647285fed1SHong Zhang vec_y = _mm512_mask_load_pd(vec_y,mask,&y[8*i]); 4657285fed1SHong Zhang } else { 4667285fed1SHong Zhang vec_y = _mm512_load_pd(&y[8*i]); 4677285fed1SHong Zhang } 4687285fed1SHong Zhang vec_y2 = _mm512_setzero_pd(); 4697285fed1SHong Zhang vec_y3 = _mm512_setzero_pd(); 4707285fed1SHong Zhang vec_y4 = _mm512_setzero_pd(); 4717285fed1SHong Zhang 4727285fed1SHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 4737285fed1SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 4747285fed1SHong Zhang case 3: 4757285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 4767285fed1SHong Zhang acolidx += 8; aval += 8; 4777285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 4787285fed1SHong Zhang acolidx += 8; aval += 8; 4797285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 4807285fed1SHong Zhang acolidx += 8; aval += 8; 4817285fed1SHong Zhang j += 3; 4827285fed1SHong Zhang break; 4837285fed1SHong Zhang case 2: 4847285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 4857285fed1SHong Zhang acolidx += 8; aval += 8; 4867285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 4877285fed1SHong Zhang acolidx += 8; aval += 8; 4887285fed1SHong Zhang j += 2; 4897285fed1SHong Zhang break; 4907285fed1SHong Zhang case 1: 4917285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 4927285fed1SHong Zhang acolidx += 8; aval += 8; 4937285fed1SHong Zhang j += 1; 4947285fed1SHong Zhang break; 4957285fed1SHong Zhang } 4967285fed1SHong Zhang #pragma novector 4977285fed1SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 4987285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 4997285fed1SHong Zhang acolidx += 8; aval += 8; 5007285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5017285fed1SHong Zhang acolidx += 8; aval += 8; 5027285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5037285fed1SHong Zhang acolidx += 8; aval += 8; 5047285fed1SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 5057285fed1SHong Zhang acolidx += 8; aval += 8; 5067285fed1SHong Zhang } 5077285fed1SHong Zhang 5087285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 5097285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 5107285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 5117285fed1SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 512d4002b98SHong Zhang _mm512_mask_store_pd(&z[8*i],mask,vec_y); 513d4002b98SHong Zhang } else { 514d4002b98SHong Zhang _mm512_store_pd(&z[8*i],vec_y); 515d4002b98SHong Zhang } 5167285fed1SHong Zhang } 5177285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 5187285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 5197285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5207285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5217285fed1SHong Zhang 5227285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 5237285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 5247285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 5257285fed1SHong Zhang row = 8*i + r; 5267285fed1SHong Zhang yval = (MatScalar)0.0; 5277285fed1SHong Zhang nnz_in_row = a->rlen[row]; 5287285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 5297285fed1SHong Zhang z[row] = y[row] + yval; 5307285fed1SHong Zhang } 5317285fed1SHong Zhang break; 5327285fed1SHong Zhang } 5337285fed1SHong Zhang 5347285fed1SHong Zhang vec_y = _mm256_loadu_pd(y+8*i); 5357285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y+8*i+4); 5367285fed1SHong Zhang 5377285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 5387285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 5397285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 5407285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 5417285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 5427285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 5437285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 5447285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 5457285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 5467285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 5477285fed1SHong Zhang aval += 4; 5487285fed1SHong Zhang 5497285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 5507285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 5517285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 5527285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 5537285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 5547285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 5557285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 5567285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 5577285fed1SHong Zhang aval += 4; 5587285fed1SHong Zhang } 5597285fed1SHong Zhang 5607285fed1SHong Zhang _mm256_storeu_pd(z+i*8,vec_y); 5617285fed1SHong Zhang _mm256_storeu_pd(z+i*8+4,vec_y2); 5627285fed1SHong Zhang } 563d4002b98SHong Zhang #else 5647285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 5657285fed1SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 566d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 567d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 568d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 569d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 570d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 571d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 572d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 573d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 574d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 575d4002b98SHong Zhang } 5767285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 5777285fed1SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j]; 578d4002b98SHong Zhang } else { 5797285fed1SHong Zhang for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j]; 5807285fed1SHong Zhang } 581d4002b98SHong Zhang } 582d4002b98SHong Zhang #endif 583d4002b98SHong Zhang 584d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 585d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 586d4002b98SHong Zhang ierr = VecRestoreArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 587d4002b98SHong Zhang PetscFunctionReturn(0); 588d4002b98SHong Zhang } 589d4002b98SHong Zhang 590d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy) 591d4002b98SHong Zhang { 592d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 593d4002b98SHong Zhang PetscScalar *y; 594d4002b98SHong Zhang const PetscScalar *x; 595d4002b98SHong Zhang const MatScalar *aval=a->val; 596d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 5977285fed1SHong Zhang PetscInt i,j,r,row,nnz_in_row,totalslices=a->totalslices; 598d4002b98SHong Zhang PetscErrorCode ierr; 599d4002b98SHong Zhang 600d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 601d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 602d4002b98SHong Zhang #endif 603d4002b98SHong Zhang 604d4002b98SHong Zhang PetscFunctionBegin; 605d4002b98SHong Zhang if (zz != yy) { ierr = VecCopy(zz,yy);CHKERRQ(ierr); } 606d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 607d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 608d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 6097285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6107285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 6117285fed1SHong Zhang row = 8*i + r; 6127285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6137285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row]; 6147285fed1SHong Zhang } 6157285fed1SHong Zhang break; 6167285fed1SHong Zhang } 6177285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 6187285fed1SHong Zhang y[acolidx[j]] += aval[j] * x[8*i]; 6197285fed1SHong Zhang y[acolidx[j+1]] += aval[j+1] * x[8*i+1]; 6207285fed1SHong Zhang y[acolidx[j+2]] += aval[j+2] * x[8*i+2]; 6217285fed1SHong Zhang y[acolidx[j+3]] += aval[j+3] * x[8*i+3]; 6227285fed1SHong Zhang y[acolidx[j+4]] += aval[j+4] * x[8*i+4]; 6237285fed1SHong Zhang y[acolidx[j+5]] += aval[j+5] * x[8*i+5]; 6247285fed1SHong Zhang y[acolidx[j+6]] += aval[j+6] * x[8*i+6]; 6257285fed1SHong Zhang y[acolidx[j+7]] += aval[j+7] * x[8*i+7]; 626d4002b98SHong Zhang } 627d4002b98SHong Zhang } 628d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->sliidx[a->totalslices]);CHKERRQ(ierr); 629d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 630d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 631d4002b98SHong Zhang PetscFunctionReturn(0); 632d4002b98SHong Zhang } 633d4002b98SHong Zhang 634d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy) 635d4002b98SHong Zhang { 636d4002b98SHong Zhang PetscErrorCode ierr; 637d4002b98SHong Zhang 638d4002b98SHong Zhang PetscFunctionBegin; 639d4002b98SHong Zhang ierr = VecSet(yy,0.0);CHKERRQ(ierr); 640d4002b98SHong Zhang ierr = MatMultTransposeAdd_SeqSELL(A,xx,yy,yy);CHKERRQ(ierr); 641d4002b98SHong Zhang PetscFunctionReturn(0); 642d4002b98SHong Zhang } 643d4002b98SHong Zhang 644d4002b98SHong Zhang /* 645d4002b98SHong Zhang Checks for missing diagonals 646d4002b98SHong Zhang */ 647d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool *missing,PetscInt *d) 648d4002b98SHong Zhang { 649d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 650d4002b98SHong Zhang PetscInt *diag,i; 651d4002b98SHong Zhang 652d4002b98SHong Zhang PetscFunctionBegin; 653d4002b98SHong Zhang *missing = PETSC_FALSE; 654d4002b98SHong Zhang if (A->rmap->n > 0 && !(a->colidx)) { 655d4002b98SHong Zhang *missing = PETSC_TRUE; 656d4002b98SHong Zhang if (d) *d = 0; 657d4002b98SHong Zhang PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n"); 658d4002b98SHong Zhang } else { 659d4002b98SHong Zhang diag = a->diag; 660d4002b98SHong Zhang for (i=0; i<A->rmap->n; i++) { 661d4002b98SHong Zhang if (diag[i] == -1) { 662d4002b98SHong Zhang *missing = PETSC_TRUE; 663d4002b98SHong Zhang if (d) *d = i; 664d4002b98SHong Zhang PetscInfo1(A,"Matrix is missing diagonal number %D\n",i); 665d4002b98SHong Zhang break; 666d4002b98SHong Zhang } 667d4002b98SHong Zhang } 668d4002b98SHong Zhang } 669d4002b98SHong Zhang PetscFunctionReturn(0); 670d4002b98SHong Zhang } 671d4002b98SHong Zhang 672d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A) 673d4002b98SHong Zhang { 674d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 675d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 676d4002b98SHong Zhang PetscErrorCode ierr; 677d4002b98SHong Zhang 678d4002b98SHong Zhang PetscFunctionBegin; 679d4002b98SHong Zhang if (!a->diag) { 680d4002b98SHong Zhang ierr = PetscMalloc1(m,&a->diag);CHKERRQ(ierr); 681d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr); 682d4002b98SHong Zhang a->free_diag = PETSC_TRUE; 683d4002b98SHong Zhang } 684d4002b98SHong Zhang for (i=0; i<m; i++) { /* loop over rows */ 685d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 686d4002b98SHong Zhang a->diag[i] = -1; 687d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 688d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 689d4002b98SHong Zhang a->diag[i] = shift+j*8; 690d4002b98SHong Zhang break; 691d4002b98SHong Zhang } 692d4002b98SHong Zhang } 693d4002b98SHong Zhang } 694d4002b98SHong Zhang PetscFunctionReturn(0); 695d4002b98SHong Zhang } 696d4002b98SHong Zhang 697d4002b98SHong Zhang /* 698d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways 699d4002b98SHong Zhang */ 700d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift) 701d4002b98SHong Zhang { 702d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*) A->data; 703d4002b98SHong Zhang PetscInt i,*diag,m = A->rmap->n; 704d4002b98SHong Zhang MatScalar *val = a->val; 705d4002b98SHong Zhang PetscScalar *idiag,*mdiag; 706d4002b98SHong Zhang PetscErrorCode ierr; 707d4002b98SHong Zhang 708d4002b98SHong Zhang PetscFunctionBegin; 709d4002b98SHong Zhang if (a->idiagvalid) PetscFunctionReturn(0); 710d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 711d4002b98SHong Zhang diag = a->diag; 712d4002b98SHong Zhang if (!a->idiag) { 713d4002b98SHong Zhang ierr = PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work);CHKERRQ(ierr); 714d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar));CHKERRQ(ierr); 715d4002b98SHong Zhang val = a->val; 716d4002b98SHong Zhang } 717d4002b98SHong Zhang mdiag = a->mdiag; 718d4002b98SHong Zhang idiag = a->idiag; 719d4002b98SHong Zhang 720d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) { 721d4002b98SHong Zhang for (i=0; i<m; i++) { 722d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 723d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */ 724d4002b98SHong Zhang if (PetscRealPart(fshift)) { 725d4002b98SHong Zhang ierr = PetscInfo1(A,"Zero diagonal on row %D\n",i);CHKERRQ(ierr); 726d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 727d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0; 728d4002b98SHong Zhang A->factorerror_zeropivot_row = i; 729d4002b98SHong Zhang } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %D",i); 730d4002b98SHong Zhang } 731d4002b98SHong Zhang idiag[i] = 1.0/val[diag[i]]; 732d4002b98SHong Zhang } 733d4002b98SHong Zhang ierr = PetscLogFlops(m);CHKERRQ(ierr); 734d4002b98SHong Zhang } else { 735d4002b98SHong Zhang for (i=0; i<m; i++) { 736d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 737d4002b98SHong Zhang idiag[i] = omega/(fshift + val[diag[i]]); 738d4002b98SHong Zhang } 739d4002b98SHong Zhang ierr = PetscLogFlops(2.0*m);CHKERRQ(ierr); 740d4002b98SHong Zhang } 741d4002b98SHong Zhang a->idiagvalid = PETSC_TRUE; 742d4002b98SHong Zhang PetscFunctionReturn(0); 743d4002b98SHong Zhang } 744d4002b98SHong Zhang 745d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A) 746d4002b98SHong Zhang { 747d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 748d4002b98SHong Zhang PetscErrorCode ierr; 749d4002b98SHong Zhang 750d4002b98SHong Zhang PetscFunctionBegin; 751d4002b98SHong Zhang ierr = PetscMemzero(a->val,(a->sliidx[a->totalslices])*sizeof(PetscScalar));CHKERRQ(ierr); 752d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 753d4002b98SHong Zhang PetscFunctionReturn(0); 754d4002b98SHong Zhang } 755d4002b98SHong Zhang 756d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A) 757d4002b98SHong Zhang { 758d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 759d4002b98SHong Zhang PetscErrorCode ierr; 760d4002b98SHong Zhang 761d4002b98SHong Zhang PetscFunctionBegin; 762d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 763d4002b98SHong Zhang PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->n,A->cmap->n,a->nz); 764d4002b98SHong Zhang #endif 765d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(A,&a->val,&a->colidx);CHKERRQ(ierr); 766d4002b98SHong Zhang ierr = ISDestroy(&a->row);CHKERRQ(ierr); 767d4002b98SHong Zhang ierr = ISDestroy(&a->col);CHKERRQ(ierr); 768d4002b98SHong Zhang ierr = PetscFree(a->diag);CHKERRQ(ierr); 769d4002b98SHong Zhang ierr = PetscFree(a->ibdiag);CHKERRQ(ierr); 770d4002b98SHong Zhang ierr = PetscFree(a->rlen);CHKERRQ(ierr); 771d4002b98SHong Zhang ierr = PetscFree(a->sliidx);CHKERRQ(ierr); 772d4002b98SHong Zhang ierr = PetscFree3(a->idiag,a->mdiag,a->ssor_work);CHKERRQ(ierr); 773d4002b98SHong Zhang ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 774d4002b98SHong Zhang ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 775d4002b98SHong Zhang ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 776d4002b98SHong Zhang 777d4002b98SHong Zhang ierr = PetscFree(A->data);CHKERRQ(ierr); 778d4002b98SHong Zhang 779d4002b98SHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 780d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr); 781d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 782d4002b98SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 783d4002b98SHong Zhang #endif 784d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL);CHKERRQ(ierr); 785d4002b98SHong Zhang PetscFunctionReturn(0); 786d4002b98SHong Zhang } 787d4002b98SHong Zhang 788d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg) 789d4002b98SHong Zhang { 790d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 791d4002b98SHong Zhang PetscErrorCode ierr; 792d4002b98SHong Zhang 793d4002b98SHong Zhang PetscFunctionBegin; 794d4002b98SHong Zhang switch (op) { 795d4002b98SHong Zhang case MAT_ROW_ORIENTED: 796d4002b98SHong Zhang a->roworiented = flg; 797d4002b98SHong Zhang break; 798d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 799d4002b98SHong Zhang a->keepnonzeropattern = flg; 800d4002b98SHong Zhang break; 801d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 802d4002b98SHong Zhang a->nonew = (flg ? 0 : 1); 803d4002b98SHong Zhang break; 804d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 805d4002b98SHong Zhang a->nonew = (flg ? -1 : 0); 806d4002b98SHong Zhang break; 807d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 808d4002b98SHong Zhang a->nonew = (flg ? -2 : 0); 809d4002b98SHong Zhang break; 810d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 811d4002b98SHong Zhang a->nounused = (flg ? -1 : 0); 812d4002b98SHong Zhang break; 813d4002b98SHong Zhang case MAT_NEW_DIAGONALS: 814d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 815d4002b98SHong Zhang case MAT_USE_HASH_TABLE: 816d4002b98SHong Zhang ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 817d4002b98SHong Zhang break; 818d4002b98SHong Zhang case MAT_SPD: 819d4002b98SHong Zhang case MAT_SYMMETRIC: 820d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 821d4002b98SHong Zhang case MAT_HERMITIAN: 822d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 823d4002b98SHong Zhang /* These options are handled directly by MatSetOption() */ 824d4002b98SHong Zhang break; 825d4002b98SHong Zhang default: 826d4002b98SHong Zhang SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 827d4002b98SHong Zhang } 828d4002b98SHong Zhang PetscFunctionReturn(0); 829d4002b98SHong Zhang } 830d4002b98SHong Zhang 831d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v) 832d4002b98SHong Zhang { 833d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 834d4002b98SHong Zhang PetscInt i,j,n,shift; 835d4002b98SHong Zhang PetscScalar *x,zero=0.0; 836d4002b98SHong Zhang PetscErrorCode ierr; 837d4002b98SHong Zhang 838d4002b98SHong Zhang PetscFunctionBegin; 839d4002b98SHong Zhang ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 840d4002b98SHong Zhang if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 841d4002b98SHong Zhang 842d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) { 843d4002b98SHong Zhang PetscInt *diag=a->diag; 844d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 845d4002b98SHong Zhang for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]]; 846d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 847d4002b98SHong Zhang PetscFunctionReturn(0); 848d4002b98SHong Zhang } 849d4002b98SHong Zhang 850d4002b98SHong Zhang ierr = VecSet(v,zero);CHKERRQ(ierr); 851d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 852d4002b98SHong Zhang for (i=0; i<n; i++) { /* loop over rows */ 853d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 854d4002b98SHong Zhang x[i] = 0; 855d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 856d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 857d4002b98SHong Zhang x[i] = a->val[shift+j*8]; 858d4002b98SHong Zhang break; 859d4002b98SHong Zhang } 860d4002b98SHong Zhang } 861d4002b98SHong Zhang } 862d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 863d4002b98SHong Zhang PetscFunctionReturn(0); 864d4002b98SHong Zhang } 865d4002b98SHong Zhang 866d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr) 867d4002b98SHong Zhang { 868d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 869d4002b98SHong Zhang const PetscScalar *l,*r; 870d4002b98SHong Zhang PetscInt i,j,m,n,row; 871d4002b98SHong Zhang PetscErrorCode ierr; 872d4002b98SHong Zhang 873d4002b98SHong Zhang PetscFunctionBegin; 874d4002b98SHong Zhang if (ll) { 875d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine 876d4002b98SHong Zhang by MatDiagonalScale_MPISELL */ 877d4002b98SHong Zhang ierr = VecGetLocalSize(ll,&m);CHKERRQ(ierr); 878d4002b98SHong Zhang if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length"); 879d4002b98SHong Zhang ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 880d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 881d4002b98SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 882d4002b98SHong Zhang a->val[j] *= l[8*i+row]; 883d4002b98SHong Zhang } 884d4002b98SHong Zhang } 885d4002b98SHong Zhang ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 886d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 887d4002b98SHong Zhang } 888d4002b98SHong Zhang if (rr) { 889d4002b98SHong Zhang ierr = VecGetLocalSize(rr,&n);CHKERRQ(ierr); 890d4002b98SHong Zhang if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length"); 891d4002b98SHong Zhang ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr); 892d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 893d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) { 894d4002b98SHong Zhang a->val[j] *= r[a->colidx[j]]; 895d4002b98SHong Zhang } 896d4002b98SHong Zhang } 897d4002b98SHong Zhang ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr); 898d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 899d4002b98SHong Zhang } 900d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 901d4002b98SHong Zhang PetscFunctionReturn(0); 902d4002b98SHong Zhang } 903d4002b98SHong Zhang 904d4002b98SHong Zhang extern PetscErrorCode MatSetValues_SeqSELL(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 905d4002b98SHong Zhang 906d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 907d4002b98SHong Zhang { 908d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 909d4002b98SHong Zhang PetscInt *cp,i,k,low,high,t,row,col,l; 910d4002b98SHong Zhang PetscInt shift; 911d4002b98SHong Zhang MatScalar *vp; 912d4002b98SHong Zhang 913d4002b98SHong Zhang PetscFunctionBegin; 914d4002b98SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 915d4002b98SHong Zhang row = im[k]; 916d4002b98SHong Zhang if (row<0) continue; 917d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 918d4002b98SHong Zhang if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1); 919d4002b98SHong Zhang #endif 920d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 921d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 922d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 923d4002b98SHong Zhang for (l=0; l<n; l++) { /* loop over added rows */ 924d4002b98SHong Zhang col = in[l]; 925d4002b98SHong Zhang if (col<0) continue; 926d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 927d4002b98SHong Zhang if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %D max %D",col,A->cmap->n-1); 928d4002b98SHong Zhang #endif 929d4002b98SHong Zhang high = a->rlen[row]; low = 0; /* assume unsorted */ 930d4002b98SHong Zhang while (high-low > 5) { 931d4002b98SHong Zhang t = (low+high)/2; 932d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 933d4002b98SHong Zhang else low = t; 934d4002b98SHong Zhang } 935d4002b98SHong Zhang for (i=low; i<high; i++) { 936d4002b98SHong Zhang if (*(cp+8*i) > col) break; 937d4002b98SHong Zhang if (*(cp+8*i) == col) { 938d4002b98SHong Zhang *v++ = *(vp+8*i); 939d4002b98SHong Zhang goto finished; 940d4002b98SHong Zhang } 941d4002b98SHong Zhang } 942d4002b98SHong Zhang *v++ = 0.0; 943d4002b98SHong Zhang finished:; 944d4002b98SHong Zhang } 945d4002b98SHong Zhang } 946d4002b98SHong Zhang PetscFunctionReturn(0); 947d4002b98SHong Zhang } 948d4002b98SHong Zhang 949d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer) 950d4002b98SHong Zhang { 951d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 952d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 953d4002b98SHong Zhang const char *name; 954d4002b98SHong Zhang PetscViewerFormat format; 955d4002b98SHong Zhang PetscErrorCode ierr; 956d4002b98SHong Zhang 957d4002b98SHong Zhang PetscFunctionBegin; 958d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 959d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) { 960d4002b98SHong Zhang PetscInt nofinalvalue = 0; 961d4002b98SHong Zhang /* 962d4002b98SHong Zhang if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) { 963d4002b98SHong Zhang nofinalvalue = 1; 964d4002b98SHong Zhang } 965d4002b98SHong Zhang */ 966d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 967d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",m,A->cmap->n);CHKERRQ(ierr); 968d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %D \n",a->nz);CHKERRQ(ierr); 969d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 970d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,4);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 971d4002b98SHong Zhang #else 972d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,3);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 973d4002b98SHong Zhang #endif 974d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = [\n");CHKERRQ(ierr); 975d4002b98SHong Zhang 976d4002b98SHong Zhang for (i=0; i<m; i++) { 977d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 978d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 979d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 980d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 981d4002b98SHong Zhang #else 982d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j]);CHKERRQ(ierr); 983d4002b98SHong Zhang #endif 984d4002b98SHong Zhang } 985d4002b98SHong Zhang } 986d4002b98SHong Zhang /* 987d4002b98SHong Zhang if (nofinalvalue) { 988d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 989d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e %18.16e\n",m,A->cmap->n,0.,0.);CHKERRQ(ierr); 990d4002b98SHong Zhang #else 991d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e\n",m,A->cmap->n,0.0);CHKERRQ(ierr); 992d4002b98SHong Zhang #endif 993d4002b98SHong Zhang } 994d4002b98SHong Zhang */ 995d4002b98SHong Zhang ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 996d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name);CHKERRQ(ierr); 997d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 998d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) { 999d4002b98SHong Zhang PetscFunctionReturn(0); 1000d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1001d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1002d4002b98SHong Zhang for (i=0; i<m; i++) { 1003d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1004d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1005d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1006d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1007d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1008d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1009d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1010d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1011d4002b98SHong Zhang } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) { 1012d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1013d4002b98SHong Zhang } 1014d4002b98SHong Zhang #else 1015d4002b98SHong Zhang if (a->val[shift+8*j] != 0.0) {ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);} 1016d4002b98SHong Zhang #endif 1017d4002b98SHong Zhang } 1018d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1019d4002b98SHong Zhang } 1020d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1021d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) { 1022d4002b98SHong Zhang PetscInt cnt=0,jcnt; 1023d4002b98SHong Zhang PetscScalar value; 1024d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1025d4002b98SHong Zhang PetscBool realonly=PETSC_TRUE; 1026d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1027d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) { 1028d4002b98SHong Zhang realonly = PETSC_FALSE; 1029d4002b98SHong Zhang break; 1030d4002b98SHong Zhang } 1031d4002b98SHong Zhang } 1032d4002b98SHong Zhang #endif 1033d4002b98SHong Zhang 1034d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1035d4002b98SHong Zhang for (i=0; i<m; i++) { 1036d4002b98SHong Zhang jcnt = 0; 1037d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1038d4002b98SHong Zhang for (j=0; j<A->cmap->n; j++) { 1039d4002b98SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) { 1040d4002b98SHong Zhang value = a->val[cnt++]; 1041d4002b98SHong Zhang jcnt++; 1042d4002b98SHong Zhang } else { 1043d4002b98SHong Zhang value = 0.0; 1044d4002b98SHong Zhang } 1045d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1046d4002b98SHong Zhang if (realonly) { 1047d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value));CHKERRQ(ierr); 1048d4002b98SHong Zhang } else { 1049d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value));CHKERRQ(ierr); 1050d4002b98SHong Zhang } 1051d4002b98SHong Zhang #else 1052d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value);CHKERRQ(ierr); 1053d4002b98SHong Zhang #endif 1054d4002b98SHong Zhang } 1055d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1056d4002b98SHong Zhang } 1057d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1058d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) { 1059d4002b98SHong Zhang PetscInt fshift=1; 1060d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1061d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1062d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n");CHKERRQ(ierr); 1063d4002b98SHong Zhang #else 1064d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n");CHKERRQ(ierr); 1065d4002b98SHong Zhang #endif 1066d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D\n", m, A->cmap->n, a->nz);CHKERRQ(ierr); 1067d4002b98SHong Zhang for (i=0; i<m; i++) { 1068d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1069d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1070d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1071d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1072d4002b98SHong Zhang #else 1073d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j]);CHKERRQ(ierr); 1074d4002b98SHong Zhang #endif 1075d4002b98SHong Zhang } 1076d4002b98SHong Zhang } 1077d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1078d4002b98SHong Zhang } else { 1079d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1080d4002b98SHong Zhang if (A->factortype) { 1081d4002b98SHong Zhang for (i=0; i<m; i++) { 1082d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1083d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1084d4002b98SHong Zhang /* L part */ 1085d4002b98SHong Zhang for (j=shift; j<a->diag[i]; j+=8) { 1086d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1087d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) { 1088d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1089d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) { 1090d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1091d4002b98SHong Zhang } else { 1092d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1093d4002b98SHong Zhang } 1094d4002b98SHong Zhang #else 1095d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1096d4002b98SHong Zhang #endif 1097d4002b98SHong Zhang } 1098d4002b98SHong Zhang /* diagonal */ 1099d4002b98SHong Zhang j = a->diag[i]; 1100d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1101d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1102d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]));CHKERRQ(ierr); 1103d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1104d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])));CHKERRQ(ierr); 1105d4002b98SHong Zhang } else { 1106d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]));CHKERRQ(ierr); 1107d4002b98SHong Zhang } 1108d4002b98SHong Zhang #else 1109d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)(1.0/a->val[j]));CHKERRQ(ierr); 1110d4002b98SHong Zhang #endif 1111d4002b98SHong Zhang 1112d4002b98SHong Zhang /* U part */ 1113d4002b98SHong Zhang for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) { 1114d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1115d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1116d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1117d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1118d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1119d4002b98SHong Zhang } else { 1120d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1121d4002b98SHong Zhang } 1122d4002b98SHong Zhang #else 1123d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1124d4002b98SHong Zhang #endif 1125d4002b98SHong Zhang } 1126d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1127d4002b98SHong Zhang } 1128d4002b98SHong Zhang } else { 1129d4002b98SHong Zhang for (i=0; i<m; i++) { 1130d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1131d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1132d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1133d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1134d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1135d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1136d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1137d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1138d4002b98SHong Zhang } else { 1139d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1140d4002b98SHong Zhang } 1141d4002b98SHong Zhang #else 1142d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr); 1143d4002b98SHong Zhang #endif 1144d4002b98SHong Zhang } 1145d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1146d4002b98SHong Zhang } 1147d4002b98SHong Zhang } 1148d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1149d4002b98SHong Zhang } 1150d4002b98SHong Zhang ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 1151d4002b98SHong Zhang PetscFunctionReturn(0); 1152d4002b98SHong Zhang } 1153d4002b98SHong Zhang 1154d4002b98SHong Zhang #include <petscdraw.h> 1155d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa) 1156d4002b98SHong Zhang { 1157d4002b98SHong Zhang Mat A=(Mat)Aa; 1158d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1159d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1160d4002b98SHong Zhang int color; 1161d4002b98SHong Zhang PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1162d4002b98SHong Zhang PetscViewer viewer; 1163d4002b98SHong Zhang PetscViewerFormat format; 1164d4002b98SHong Zhang PetscErrorCode ierr; 1165d4002b98SHong Zhang 1166d4002b98SHong Zhang PetscFunctionBegin; 1167d4002b98SHong Zhang ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 1168d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1169d4002b98SHong Zhang ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 1170d4002b98SHong Zhang 1171d4002b98SHong Zhang /* loop over matrix elements drawing boxes */ 1172d4002b98SHong Zhang 1173d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1174d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1175d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */ 1176d4002b98SHong Zhang color = PETSC_DRAW_BLUE; 1177d4002b98SHong Zhang for (i=0; i<m; i++) { 1178d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1179d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1180d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1181d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1182d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) >= 0.) continue; 1183d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1184d4002b98SHong Zhang } 1185d4002b98SHong Zhang } 1186d4002b98SHong Zhang color = PETSC_DRAW_CYAN; 1187d4002b98SHong Zhang for (i=0; i<m; i++) { 1188d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1189d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1190d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1191d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1192d4002b98SHong Zhang if (a->val[shift+8*j] != 0.) continue; 1193d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1194d4002b98SHong Zhang } 1195d4002b98SHong Zhang } 1196d4002b98SHong Zhang color = PETSC_DRAW_RED; 1197d4002b98SHong Zhang for (i=0; i<m; i++) { 1198d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1199d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1200d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1201d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1202d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) <= 0.) continue; 1203d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1204d4002b98SHong Zhang } 1205d4002b98SHong Zhang } 1206d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1207d4002b98SHong Zhang } else { 1208d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */ 1209d4002b98SHong Zhang /* first determine max of all nonzero values */ 1210d4002b98SHong Zhang PetscReal minv=0.0,maxv=0.0; 1211d4002b98SHong Zhang PetscInt count=0; 1212d4002b98SHong Zhang PetscDraw popup; 1213d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1214d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]); 1215d4002b98SHong Zhang } 1216d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL; 1217d4002b98SHong Zhang ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 1218d4002b98SHong Zhang ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr); 1219d4002b98SHong Zhang 1220d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1221d4002b98SHong Zhang for (i=0; i<m; i++) { 1222d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1223d4002b98SHong Zhang y_l = m - i - 1.0; 1224d4002b98SHong Zhang y_r = y_l + 1.0; 1225d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1226d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; 1227d4002b98SHong Zhang x_r = x_l + 1.0; 1228d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv); 1229d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1230d4002b98SHong Zhang count++; 1231d4002b98SHong Zhang } 1232d4002b98SHong Zhang } 1233d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1234d4002b98SHong Zhang } 1235d4002b98SHong Zhang PetscFunctionReturn(0); 1236d4002b98SHong Zhang } 1237d4002b98SHong Zhang 1238d4002b98SHong Zhang #include <petscdraw.h> 1239d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer) 1240d4002b98SHong Zhang { 1241d4002b98SHong Zhang PetscDraw draw; 1242d4002b98SHong Zhang PetscReal xr,yr,xl,yl,h,w; 1243d4002b98SHong Zhang PetscBool isnull; 1244d4002b98SHong Zhang PetscErrorCode ierr; 1245d4002b98SHong Zhang 1246d4002b98SHong Zhang PetscFunctionBegin; 1247d4002b98SHong Zhang ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1248d4002b98SHong Zhang ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1249d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 1250d4002b98SHong Zhang 1251d4002b98SHong Zhang xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1252d4002b98SHong Zhang xr += w; yr += h; xl = -w; yl = -h; 1253d4002b98SHong Zhang ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1254d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1255d4002b98SHong Zhang ierr = PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A);CHKERRQ(ierr); 1256d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 1257d4002b98SHong Zhang ierr = PetscDrawSave(draw);CHKERRQ(ierr); 1258d4002b98SHong Zhang PetscFunctionReturn(0); 1259d4002b98SHong Zhang } 1260d4002b98SHong Zhang 1261d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer) 1262d4002b98SHong Zhang { 1263d4002b98SHong Zhang PetscBool iascii,isbinary,isdraw; 1264d4002b98SHong Zhang PetscErrorCode ierr; 1265d4002b98SHong Zhang 1266d4002b98SHong Zhang PetscFunctionBegin; 1267d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1268d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1269d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1270d4002b98SHong Zhang if (iascii) { 1271d4002b98SHong Zhang ierr = MatView_SeqSELL_ASCII(A,viewer);CHKERRQ(ierr); 1272d4002b98SHong Zhang } else if (isbinary) { 1273d4002b98SHong Zhang /* ierr = MatView_SeqSELL_Binary(A,viewer);CHKERRQ(ierr); */ 1274d4002b98SHong Zhang } else if (isdraw) { 1275d4002b98SHong Zhang ierr = MatView_SeqSELL_Draw(A,viewer);CHKERRQ(ierr); 1276d4002b98SHong Zhang } 1277d4002b98SHong Zhang PetscFunctionReturn(0); 1278d4002b98SHong Zhang } 1279d4002b98SHong Zhang 1280d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode) 1281d4002b98SHong Zhang { 1282d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1283d4002b98SHong Zhang PetscInt i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k; 1284d4002b98SHong Zhang MatScalar *vp; 1285d4002b98SHong Zhang PetscErrorCode ierr; 1286d4002b98SHong Zhang 1287d4002b98SHong Zhang PetscFunctionBegin; 1288d4002b98SHong Zhang if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1289d4002b98SHong Zhang /* To do: compress out the unused elements */ 1290d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 1291d4002b98SHong Zhang ierr = PetscInfo6(A,"Matrix size: %D X %D; storage space: %D allocated %D used (%D nonzeros+%D paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz);CHKERRQ(ierr); 1292d4002b98SHong Zhang ierr = PetscInfo1(A,"Number of mallocs during MatSetValues() is %D\n",a->reallocs);CHKERRQ(ierr); 1293d4002b98SHong Zhang ierr = PetscInfo1(A,"Maximum nonzeros in any row is %D\n",a->rlenmax);CHKERRQ(ierr); 1294d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */ 1295d4002b98SHong Zhang for (i=0; i<a->totalslices; ++i) { 1296d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */ 1297d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the column indices of the slice */ 1298d4002b98SHong Zhang vp = a->val+shift; /* pointer to the nonzero values of the slice */ 1299d4002b98SHong Zhang for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */ 1300d4002b98SHong Zhang row = 8*i + row_in_slice; 1301d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */ 1302d4002b98SHong Zhang /* 1303d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication. 1304d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded. 1305d4002b98SHong Zhang */ 1306d4002b98SHong Zhang lastcol = 0; 1307d4002b98SHong Zhang if (nrow>0) { /* nonempty row */ 1308d4002b98SHong Zhang lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */ 1309d4002b98SHong Zhang } else if (!row_in_slice) { /* first row of the currect slice is empty */ 1310d4002b98SHong Zhang for (j=1;j<8;j++) { 1311d4002b98SHong Zhang if (a->rlen[8*i+j]) { 1312d4002b98SHong Zhang lastcol = cp[j]; 1313d4002b98SHong Zhang break; 1314d4002b98SHong Zhang } 1315d4002b98SHong Zhang } 1316d4002b98SHong Zhang } else { 1317d4002b98SHong Zhang if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */ 1318d4002b98SHong Zhang } 1319d4002b98SHong Zhang 1320d4002b98SHong Zhang for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) { 1321d4002b98SHong Zhang cp[8*k+row_in_slice] = lastcol; 1322d4002b98SHong Zhang vp[8*k+row_in_slice] = (MatScalar)0; 1323d4002b98SHong Zhang } 1324d4002b98SHong Zhang } 1325d4002b98SHong Zhang } 1326d4002b98SHong Zhang 1327d4002b98SHong Zhang A->info.mallocs += a->reallocs; 1328d4002b98SHong Zhang a->reallocs = 0; 1329d4002b98SHong Zhang 1330d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1331d4002b98SHong Zhang PetscFunctionReturn(0); 1332d4002b98SHong Zhang } 1333d4002b98SHong Zhang 1334d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info) 1335d4002b98SHong Zhang { 1336d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1337d4002b98SHong Zhang 1338d4002b98SHong Zhang PetscFunctionBegin; 1339d4002b98SHong Zhang info->block_size = 1.0; 1340d4002b98SHong Zhang info->nz_allocated = (double)a->maxallocmat; 1341d4002b98SHong Zhang info->nz_used = (double)a->sliidx[a->totalslices]; /* include padding zeros */ 1342d4002b98SHong Zhang info->nz_unneeded = (double)(a->maxallocmat-a->sliidx[a->totalslices]); 1343d4002b98SHong Zhang info->assemblies = (double)A->num_ass; 1344d4002b98SHong Zhang info->mallocs = (double)A->info.mallocs; 1345d4002b98SHong Zhang info->memory = ((PetscObject)A)->mem; 1346d4002b98SHong Zhang if (A->factortype) { 1347d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given; 1348d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed; 1349d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs; 1350d4002b98SHong Zhang } else { 1351d4002b98SHong Zhang info->fill_ratio_given = 0; 1352d4002b98SHong Zhang info->fill_ratio_needed = 0; 1353d4002b98SHong Zhang info->factor_mallocs = 0; 1354d4002b98SHong Zhang } 1355d4002b98SHong Zhang PetscFunctionReturn(0); 1356d4002b98SHong Zhang } 1357d4002b98SHong Zhang 1358d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 1359d4002b98SHong Zhang { 1360d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1361d4002b98SHong Zhang PetscInt shift,i,k,l,low,high,t,ii,row,col,nrow; 1362d4002b98SHong Zhang PetscInt *cp,nonew=a->nonew,lastcol=-1; 1363d4002b98SHong Zhang MatScalar *vp,value; 1364d4002b98SHong Zhang PetscErrorCode ierr; 1365d4002b98SHong Zhang 1366d4002b98SHong Zhang PetscFunctionBegin; 1367d4002b98SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 1368d4002b98SHong Zhang row = im[k]; 1369d4002b98SHong Zhang if (row < 0) continue; 1370d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 1371d4002b98SHong Zhang if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1); 1372d4002b98SHong Zhang #endif 1373d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1374d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1375d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 1376d4002b98SHong Zhang nrow = a->rlen[row]; 1377d4002b98SHong Zhang low = 0; 1378d4002b98SHong Zhang high = nrow; 1379d4002b98SHong Zhang 1380d4002b98SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 1381d4002b98SHong Zhang col = in[l]; 1382d4002b98SHong Zhang if (col<0) continue; 1383d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 1384d4002b98SHong Zhang if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %D max %D",col,A->cmap->n-1); 1385d4002b98SHong Zhang #endif 1386d4002b98SHong Zhang if (a->roworiented) { 1387d4002b98SHong Zhang value = v[l+k*n]; 1388d4002b98SHong Zhang } else { 1389d4002b98SHong Zhang value = v[k+l*m]; 1390d4002b98SHong Zhang } 1391d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue; 1392d4002b98SHong Zhang 1393d4002b98SHong Zhang /* search in this row for the specified colmun, i indicates the column to be set */ 1394d4002b98SHong Zhang if (col <= lastcol) low = 0; 1395d4002b98SHong Zhang else high = nrow; 1396d4002b98SHong Zhang lastcol = col; 1397d4002b98SHong Zhang while (high-low > 5) { 1398d4002b98SHong Zhang t = (low+high)/2; 1399d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1400d4002b98SHong Zhang else low = t; 1401d4002b98SHong Zhang } 1402d4002b98SHong Zhang for (i=low; i<high; i++) { 1403d4002b98SHong Zhang if (*(cp+i*8) > col) break; 1404d4002b98SHong Zhang if (*(cp+i*8) == col) { 1405d4002b98SHong Zhang if (is == ADD_VALUES) *(vp+i*8) += value; 1406d4002b98SHong Zhang else *(vp+i*8) = value; 1407d4002b98SHong Zhang low = i + 1; 1408d4002b98SHong Zhang goto noinsert; 1409d4002b98SHong Zhang } 1410d4002b98SHong Zhang } 1411d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert; 1412d4002b98SHong Zhang if (nonew == 1) goto noinsert; 1413d4002b98SHong Zhang if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 1414d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */ 1415d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar); 1416d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */ 1417d4002b98SHong Zhang for (ii=nrow-1; ii>=i; ii--) { 1418d4002b98SHong Zhang *(cp+(ii+1)*8) = *(cp+ii*8); 1419d4002b98SHong Zhang *(vp+(ii+1)*8) = *(vp+ii*8); 1420d4002b98SHong Zhang } 1421d4002b98SHong Zhang a->rlen[row]++; 1422d4002b98SHong Zhang *(cp+i*8) = col; 1423d4002b98SHong Zhang *(vp+i*8) = value; 1424d4002b98SHong Zhang a->nz++; 1425d4002b98SHong Zhang A->nonzerostate++; 1426d4002b98SHong Zhang low = i+1; high++; nrow++; 1427d4002b98SHong Zhang noinsert:; 1428d4002b98SHong Zhang } 1429d4002b98SHong Zhang a->rlen[row] = nrow; 1430d4002b98SHong Zhang } 1431d4002b98SHong Zhang PetscFunctionReturn(0); 1432d4002b98SHong Zhang } 1433d4002b98SHong Zhang 1434d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str) 1435d4002b98SHong Zhang { 1436d4002b98SHong Zhang PetscErrorCode ierr; 1437d4002b98SHong Zhang 1438d4002b98SHong Zhang PetscFunctionBegin; 1439d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 1440d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 1441d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1442d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 1443d4002b98SHong Zhang 1444d4002b98SHong Zhang if (a->sliidx[a->totalslices] != b->sliidx[b->totalslices]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 1445d4002b98SHong Zhang ierr = PetscMemcpy(b->val,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1446d4002b98SHong Zhang } else { 1447d4002b98SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1448d4002b98SHong Zhang } 1449d4002b98SHong Zhang PetscFunctionReturn(0); 1450d4002b98SHong Zhang } 1451d4002b98SHong Zhang 1452d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A) 1453d4002b98SHong Zhang { 1454d4002b98SHong Zhang PetscErrorCode ierr; 1455d4002b98SHong Zhang 1456d4002b98SHong Zhang PetscFunctionBegin; 1457d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,0);CHKERRQ(ierr); 1458d4002b98SHong Zhang PetscFunctionReturn(0); 1459d4002b98SHong Zhang } 1460d4002b98SHong Zhang 1461d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[]) 1462d4002b98SHong Zhang { 1463d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1464d4002b98SHong Zhang 1465d4002b98SHong Zhang PetscFunctionBegin; 1466d4002b98SHong Zhang *array = a->val; 1467d4002b98SHong Zhang PetscFunctionReturn(0); 1468d4002b98SHong Zhang } 1469d4002b98SHong Zhang 1470d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[]) 1471d4002b98SHong Zhang { 1472d4002b98SHong Zhang PetscFunctionBegin; 1473d4002b98SHong Zhang PetscFunctionReturn(0); 1474d4002b98SHong Zhang } 1475d4002b98SHong Zhang 1476d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A) 1477d4002b98SHong Zhang { 1478d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1479d4002b98SHong Zhang PetscInt i; 1480d4002b98SHong Zhang MatScalar *aval=a->val; 1481d4002b98SHong Zhang 1482d4002b98SHong Zhang PetscFunctionBegin; 1483d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]); 1484d4002b98SHong Zhang PetscFunctionReturn(0); 1485d4002b98SHong Zhang } 1486d4002b98SHong Zhang 1487d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A) 1488d4002b98SHong Zhang { 1489d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1490d4002b98SHong Zhang PetscInt i; 1491d4002b98SHong Zhang MatScalar *aval=a->val; 1492d4002b98SHong Zhang PetscErrorCode ierr; 1493d4002b98SHong Zhang 1494d4002b98SHong Zhang PetscFunctionBegin; 1495d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]); 1496d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1497d4002b98SHong Zhang PetscFunctionReturn(0); 1498d4002b98SHong Zhang } 1499d4002b98SHong Zhang 1500d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha) 1501d4002b98SHong Zhang { 1502d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)inA->data; 1503d4002b98SHong Zhang MatScalar *aval=a->val; 1504d4002b98SHong Zhang PetscScalar oalpha=alpha; 1505d4002b98SHong Zhang PetscBLASInt one=1,size; 1506d4002b98SHong Zhang PetscErrorCode ierr; 1507d4002b98SHong Zhang 1508d4002b98SHong Zhang PetscFunctionBegin; 1509d4002b98SHong Zhang ierr = PetscBLASIntCast(a->sliidx[a->totalslices],&size);CHKERRQ(ierr); 1510d4002b98SHong Zhang PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one)); 1511d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1512d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(inA);CHKERRQ(ierr); 1513d4002b98SHong Zhang PetscFunctionReturn(0); 1514d4002b98SHong Zhang } 1515d4002b98SHong Zhang 1516d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a) 1517d4002b98SHong Zhang { 1518d4002b98SHong Zhang Mat_SeqSELL *y=(Mat_SeqSELL*)Y->data; 1519d4002b98SHong Zhang PetscErrorCode ierr; 1520d4002b98SHong Zhang 1521d4002b98SHong Zhang PetscFunctionBegin; 1522d4002b98SHong Zhang if (!Y->preallocated || !y->nz) { 1523d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(Y,1,NULL);CHKERRQ(ierr); 1524d4002b98SHong Zhang } 1525d4002b98SHong Zhang ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 1526d4002b98SHong Zhang PetscFunctionReturn(0); 1527d4002b98SHong Zhang } 1528d4002b98SHong Zhang 1529d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1530d4002b98SHong Zhang { 1531d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1532d4002b98SHong Zhang PetscScalar *x,sum,*t; 1533d4002b98SHong Zhang const MatScalar *idiag=0,*mdiag; 1534d4002b98SHong Zhang const PetscScalar *b,*xb; 1535d4002b98SHong Zhang PetscInt n,m=A->rmap->n,i,j,shift; 1536d4002b98SHong Zhang const PetscInt *diag; 1537d4002b98SHong Zhang PetscErrorCode ierr; 1538d4002b98SHong Zhang 1539d4002b98SHong Zhang PetscFunctionBegin; 1540d4002b98SHong Zhang its = its*lits; 1541d4002b98SHong Zhang 1542d4002b98SHong Zhang if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */ 1543d4002b98SHong Zhang if (!a->idiagvalid) {ierr = MatInvertDiagonal_SeqSELL(A,omega,fshift);CHKERRQ(ierr);} 1544d4002b98SHong Zhang a->fshift = fshift; 1545d4002b98SHong Zhang a->omega = omega; 1546d4002b98SHong Zhang 1547d4002b98SHong Zhang diag = a->diag; 1548d4002b98SHong Zhang t = a->ssor_work; 1549d4002b98SHong Zhang idiag = a->idiag; 1550d4002b98SHong Zhang mdiag = a->mdiag; 1551d4002b98SHong Zhang 1552d4002b98SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1553d4002b98SHong Zhang ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 1554d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */ 1555d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented"); 1556d4002b98SHong Zhang if (flag == SOR_APPLY_LOWER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented"); 1557d4002b98SHong Zhang if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat"); 1558d4002b98SHong Zhang 1559d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 1560d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1561d4002b98SHong Zhang for (i=0; i<m; i++) { 1562d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1563d4002b98SHong Zhang sum = b[i]; 1564d4002b98SHong Zhang n = (diag[i]-shift)/8; 1565d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1566d4002b98SHong Zhang t[i] = sum; 1567d4002b98SHong Zhang x[i] = sum*idiag[i]; 1568d4002b98SHong Zhang } 1569d4002b98SHong Zhang xb = t; 1570d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1571d4002b98SHong Zhang } else xb = b; 1572d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1573d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1574d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1575d4002b98SHong Zhang sum = xb[i]; 1576d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1577d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1578d4002b98SHong Zhang if (xb == b) { 1579d4002b98SHong Zhang x[i] = sum*idiag[i]; 1580d4002b98SHong Zhang } else { 1581d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1582d4002b98SHong Zhang } 1583d4002b98SHong Zhang } 1584d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1585d4002b98SHong Zhang } 1586d4002b98SHong Zhang its--; 1587d4002b98SHong Zhang } 1588d4002b98SHong Zhang while (its--) { 1589d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1590d4002b98SHong Zhang for (i=0; i<m; i++) { 1591d4002b98SHong Zhang /* lower */ 1592d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1593d4002b98SHong Zhang sum = b[i]; 1594d4002b98SHong Zhang n = (diag[i]-shift)/8; 1595d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1596d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */ 1597d4002b98SHong Zhang /* upper */ 1598d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1599d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1600d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1601d4002b98SHong Zhang } 1602d4002b98SHong Zhang xb = t; 1603d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1604d4002b98SHong Zhang } else xb = b; 1605d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1606d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1607d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1608d4002b98SHong Zhang sum = xb[i]; 1609d4002b98SHong Zhang if (xb == b) { 1610d4002b98SHong Zhang /* whole matrix (no checkpointing available) */ 1611d4002b98SHong Zhang n = a->rlen[i]; 1612d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1613d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i]; 1614d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */ 1615d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1616d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1617d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1618d4002b98SHong Zhang } 1619d4002b98SHong Zhang } 1620d4002b98SHong Zhang if (xb == b) { 1621d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1622d4002b98SHong Zhang } else { 1623d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1624d4002b98SHong Zhang } 1625d4002b98SHong Zhang } 1626d4002b98SHong Zhang } 1627d4002b98SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1628d4002b98SHong Zhang ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 1629d4002b98SHong Zhang PetscFunctionReturn(0); 1630d4002b98SHong Zhang } 1631d4002b98SHong Zhang 1632d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 1633d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL, 1634d4002b98SHong Zhang 0, 1635d4002b98SHong Zhang 0, 1636d4002b98SHong Zhang MatMult_SeqSELL, 1637d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL, 1638d4002b98SHong Zhang MatMultTranspose_SeqSELL, 1639d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL, 1640d4002b98SHong Zhang 0, 1641d4002b98SHong Zhang 0, 1642d4002b98SHong Zhang 0, 1643d4002b98SHong Zhang /* 10*/ 0, 1644d4002b98SHong Zhang 0, 1645d4002b98SHong Zhang 0, 1646d4002b98SHong Zhang MatSOR_SeqSELL, 1647d4002b98SHong Zhang 0, 1648d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL, 1649d4002b98SHong Zhang MatEqual_SeqSELL, 1650d4002b98SHong Zhang MatGetDiagonal_SeqSELL, 1651d4002b98SHong Zhang MatDiagonalScale_SeqSELL, 1652d4002b98SHong Zhang 0, 1653d4002b98SHong Zhang /* 20*/ 0, 1654d4002b98SHong Zhang MatAssemblyEnd_SeqSELL, 1655d4002b98SHong Zhang MatSetOption_SeqSELL, 1656d4002b98SHong Zhang MatZeroEntries_SeqSELL, 1657d4002b98SHong Zhang /* 24*/ 0, 1658d4002b98SHong Zhang 0, 1659d4002b98SHong Zhang 0, 1660d4002b98SHong Zhang 0, 1661d4002b98SHong Zhang 0, 1662d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL, 1663d4002b98SHong Zhang 0, 1664d4002b98SHong Zhang 0, 1665d4002b98SHong Zhang 0, 1666d4002b98SHong Zhang 0, 1667d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL, 1668d4002b98SHong Zhang 0, 1669d4002b98SHong Zhang 0, 1670d4002b98SHong Zhang 0, 1671d4002b98SHong Zhang 0, 1672d4002b98SHong Zhang /* 39*/ 0, 1673d4002b98SHong Zhang 0, 1674d4002b98SHong Zhang 0, 1675d4002b98SHong Zhang MatGetValues_SeqSELL, 1676d4002b98SHong Zhang MatCopy_SeqSELL, 1677d4002b98SHong Zhang /* 44*/ 0, 1678d4002b98SHong Zhang MatScale_SeqSELL, 1679d4002b98SHong Zhang MatShift_SeqSELL, 1680d4002b98SHong Zhang 0, 1681d4002b98SHong Zhang 0, 1682d4002b98SHong Zhang /* 49*/ 0, 1683d4002b98SHong Zhang 0, 1684d4002b98SHong Zhang 0, 1685d4002b98SHong Zhang 0, 1686d4002b98SHong Zhang 0, 1687d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 1688d4002b98SHong Zhang 0, 1689d4002b98SHong Zhang 0, 1690d4002b98SHong Zhang 0, 1691d4002b98SHong Zhang 0, 1692d4002b98SHong Zhang /* 59*/ 0, 1693d4002b98SHong Zhang MatDestroy_SeqSELL, 1694d4002b98SHong Zhang MatView_SeqSELL, 1695d4002b98SHong Zhang 0, 1696d4002b98SHong Zhang 0, 1697d4002b98SHong Zhang /* 64*/ 0, 1698d4002b98SHong Zhang 0, 1699d4002b98SHong Zhang 0, 1700d4002b98SHong Zhang 0, 1701d4002b98SHong Zhang 0, 1702d4002b98SHong Zhang /* 69*/ 0, 1703d4002b98SHong Zhang 0, 1704d4002b98SHong Zhang 0, 1705d4002b98SHong Zhang 0, 1706d4002b98SHong Zhang 0, 1707d4002b98SHong Zhang /* 74*/ 0, 1708d4002b98SHong Zhang MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */ 1709d4002b98SHong Zhang 0, 1710d4002b98SHong Zhang 0, 1711d4002b98SHong Zhang 0, 1712d4002b98SHong Zhang /* 79*/ 0, 1713d4002b98SHong Zhang 0, 1714d4002b98SHong Zhang 0, 1715d4002b98SHong Zhang 0, 1716d4002b98SHong Zhang 0, 1717d4002b98SHong Zhang /* 84*/ 0, 1718d4002b98SHong Zhang 0, 1719d4002b98SHong Zhang 0, 1720d4002b98SHong Zhang 0, 1721d4002b98SHong Zhang 0, 1722d4002b98SHong Zhang /* 89*/ 0, 1723d4002b98SHong Zhang 0, 1724d4002b98SHong Zhang 0, 1725d4002b98SHong Zhang 0, 1726d4002b98SHong Zhang 0, 1727d4002b98SHong Zhang /* 94*/ 0, 1728d4002b98SHong Zhang 0, 1729d4002b98SHong Zhang 0, 1730d4002b98SHong Zhang 0, 1731d4002b98SHong Zhang 0, 1732d4002b98SHong Zhang /* 99*/ 0, 1733d4002b98SHong Zhang 0, 1734d4002b98SHong Zhang 0, 1735d4002b98SHong Zhang MatConjugate_SeqSELL, 1736d4002b98SHong Zhang 0, 1737d4002b98SHong Zhang /*104*/ 0, 1738d4002b98SHong Zhang 0, 1739d4002b98SHong Zhang 0, 1740d4002b98SHong Zhang 0, 1741d4002b98SHong Zhang 0, 1742d4002b98SHong Zhang /*109*/ 0, 1743d4002b98SHong Zhang 0, 1744d4002b98SHong Zhang 0, 1745d4002b98SHong Zhang 0, 1746d4002b98SHong Zhang MatMissingDiagonal_SeqSELL, 1747d4002b98SHong Zhang /*114*/ 0, 1748d4002b98SHong Zhang 0, 1749d4002b98SHong Zhang 0, 1750d4002b98SHong Zhang 0, 1751d4002b98SHong Zhang 0, 1752d4002b98SHong Zhang /*119*/ 0, 1753d4002b98SHong Zhang 0, 1754d4002b98SHong Zhang 0, 1755d4002b98SHong Zhang 0, 1756d4002b98SHong Zhang 0, 1757d4002b98SHong Zhang /*124*/ 0, 1758d4002b98SHong Zhang 0, 1759d4002b98SHong Zhang 0, 1760d4002b98SHong Zhang 0, 1761d4002b98SHong Zhang 0, 1762d4002b98SHong Zhang /*129*/ 0, 1763d4002b98SHong Zhang 0, 1764d4002b98SHong Zhang 0, 1765d4002b98SHong Zhang 0, 1766d4002b98SHong Zhang 0, 1767d4002b98SHong Zhang /*134*/ 0, 1768d4002b98SHong Zhang 0, 1769d4002b98SHong Zhang 0, 1770d4002b98SHong Zhang 0, 1771d4002b98SHong Zhang 0, 1772d4002b98SHong Zhang /*139*/ 0, 1773d4002b98SHong Zhang 0, 1774d4002b98SHong Zhang 0, 1775d4002b98SHong Zhang MatFDColoringSetUp_SeqXAIJ, 1776d4002b98SHong Zhang 0, 1777d4002b98SHong Zhang /*144*/0 1778d4002b98SHong Zhang }; 1779d4002b98SHong Zhang 1780d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat) 1781d4002b98SHong Zhang { 1782d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1783d4002b98SHong Zhang PetscErrorCode ierr; 1784d4002b98SHong Zhang 1785d4002b98SHong Zhang PetscFunctionBegin; 1786d4002b98SHong Zhang if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1787d4002b98SHong Zhang 1788d4002b98SHong Zhang /* allocate space for values if not already there */ 1789d4002b98SHong Zhang if (!a->saved_values) { 1790d4002b98SHong Zhang ierr = PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values);CHKERRQ(ierr); 1791d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar));CHKERRQ(ierr); 1792d4002b98SHong Zhang } 1793d4002b98SHong Zhang 1794d4002b98SHong Zhang /* copy values over */ 1795d4002b98SHong Zhang ierr = PetscMemcpy(a->saved_values,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1796d4002b98SHong Zhang PetscFunctionReturn(0); 1797d4002b98SHong Zhang } 1798d4002b98SHong Zhang 1799d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat) 1800d4002b98SHong Zhang { 1801d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1802d4002b98SHong Zhang PetscErrorCode ierr; 1803d4002b98SHong Zhang 1804d4002b98SHong Zhang PetscFunctionBegin; 1805d4002b98SHong Zhang if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1806d4002b98SHong Zhang if (!a->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 1807d4002b98SHong Zhang /* copy values over */ 1808d4002b98SHong Zhang ierr = PetscMemcpy(a->val,a->saved_values,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1809d4002b98SHong Zhang PetscFunctionReturn(0); 1810d4002b98SHong Zhang } 1811d4002b98SHong Zhang 1812d4002b98SHong Zhang /*@C 1813d4002b98SHong Zhang MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray() 1814d4002b98SHong Zhang 1815d4002b98SHong Zhang Not Collective 1816d4002b98SHong Zhang 1817d4002b98SHong Zhang Input Parameters: 1818d4002b98SHong Zhang . mat - a MATSEQSELL matrix 1819d4002b98SHong Zhang . array - pointer to the data 1820d4002b98SHong Zhang 1821d4002b98SHong Zhang Level: intermediate 1822d4002b98SHong Zhang 1823d4002b98SHong Zhang .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90() 1824d4002b98SHong Zhang @*/ 1825d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array) 1826d4002b98SHong Zhang { 1827d4002b98SHong Zhang PetscErrorCode ierr; 1828d4002b98SHong Zhang 1829d4002b98SHong Zhang PetscFunctionBegin; 1830d4002b98SHong Zhang ierr = PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 1831d4002b98SHong Zhang PetscFunctionReturn(0); 1832d4002b98SHong Zhang } 1833d4002b98SHong Zhang 1834d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B) 1835d4002b98SHong Zhang { 1836d4002b98SHong Zhang Mat_SeqSELL *b; 1837d4002b98SHong Zhang PetscMPIInt size; 1838d4002b98SHong Zhang PetscErrorCode ierr; 1839d4002b98SHong Zhang 1840d4002b98SHong Zhang PetscFunctionBegin; 1841d4002b98SHong Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 1842d4002b98SHong Zhang if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1"); 1843d4002b98SHong Zhang 1844d4002b98SHong Zhang ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1845d4002b98SHong Zhang 1846d4002b98SHong Zhang B->data = (void*)b; 1847d4002b98SHong Zhang 1848d4002b98SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1849d4002b98SHong Zhang 1850d4002b98SHong Zhang b->row = 0; 1851d4002b98SHong Zhang b->col = 0; 1852d4002b98SHong Zhang b->icol = 0; 1853d4002b98SHong Zhang b->reallocs = 0; 1854d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE; 1855d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1856d4002b98SHong Zhang b->nonew = 0; 1857d4002b98SHong Zhang b->diag = 0; 1858d4002b98SHong Zhang b->solve_work = 0; 1859d4002b98SHong Zhang B->spptr = 0; 1860d4002b98SHong Zhang b->saved_values = 0; 1861d4002b98SHong Zhang b->idiag = 0; 1862d4002b98SHong Zhang b->mdiag = 0; 1863d4002b98SHong Zhang b->ssor_work = 0; 1864d4002b98SHong Zhang b->omega = 1.0; 1865d4002b98SHong Zhang b->fshift = 0.0; 1866d4002b98SHong Zhang b->idiagvalid = PETSC_FALSE; 1867d4002b98SHong Zhang b->ibdiagvalid = PETSC_FALSE; 1868d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE; 1869d4002b98SHong Zhang 1870d4002b98SHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL);CHKERRQ(ierr); 1871d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL);CHKERRQ(ierr); 1872d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL);CHKERRQ(ierr); 1873d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL);CHKERRQ(ierr); 1874d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL);CHKERRQ(ierr); 1875d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL);CHKERRQ(ierr); 1876d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ);CHKERRQ(ierr); 1877d4002b98SHong Zhang PetscFunctionReturn(0); 1878d4002b98SHong Zhang } 1879d4002b98SHong Zhang 1880d4002b98SHong Zhang /* 1881d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B 1882d4002b98SHong Zhang */ 1883d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace) 1884d4002b98SHong Zhang { 1885d4002b98SHong Zhang Mat_SeqSELL *c,*a=(Mat_SeqSELL*)A->data; 1886d4002b98SHong Zhang PetscInt i,m=A->rmap->n; 1887d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 1888d4002b98SHong Zhang PetscErrorCode ierr; 1889d4002b98SHong Zhang 1890d4002b98SHong Zhang PetscFunctionBegin; 1891d4002b98SHong Zhang c = (Mat_SeqSELL*)C->data; 1892d4002b98SHong Zhang 1893d4002b98SHong Zhang C->factortype = A->factortype; 1894d4002b98SHong Zhang c->row = 0; 1895d4002b98SHong Zhang c->col = 0; 1896d4002b98SHong Zhang c->icol = 0; 1897d4002b98SHong Zhang c->reallocs = 0; 1898d4002b98SHong Zhang 1899d4002b98SHong Zhang C->assembled = PETSC_TRUE; 1900d4002b98SHong Zhang 1901d4002b98SHong Zhang ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr); 1902d4002b98SHong Zhang ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr); 1903d4002b98SHong Zhang 1904d4002b98SHong Zhang ierr = PetscMalloc1(8*totalslices,&c->rlen);CHKERRQ(ierr); 1905d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 1906d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&c->sliidx);CHKERRQ(ierr); 1907d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 1908d4002b98SHong Zhang 1909d4002b98SHong Zhang for (i=0; i<m; i++) c->rlen[i] = a->rlen[i]; 1910d4002b98SHong Zhang for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i]; 1911d4002b98SHong Zhang 1912d4002b98SHong Zhang /* allocate the matrix space */ 1913d4002b98SHong Zhang if (mallocmatspace) { 1914d4002b98SHong Zhang ierr = PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx);CHKERRQ(ierr); 1915d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 1916d4002b98SHong Zhang 1917d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE; 1918d4002b98SHong Zhang 1919d4002b98SHong Zhang if (m > 0) { 1920d4002b98SHong Zhang ierr = PetscMemcpy(c->colidx,a->colidx,(a->maxallocmat)*sizeof(PetscInt));CHKERRQ(ierr); 1921d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) { 1922d4002b98SHong Zhang ierr = PetscMemcpy(c->val,a->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr); 1923d4002b98SHong Zhang } else { 1924d4002b98SHong Zhang ierr = PetscMemzero(c->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr); 1925d4002b98SHong Zhang } 1926d4002b98SHong Zhang } 1927d4002b98SHong Zhang } 1928d4002b98SHong Zhang 1929d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries; 1930d4002b98SHong Zhang c->roworiented = a->roworiented; 1931d4002b98SHong Zhang c->nonew = a->nonew; 1932d4002b98SHong Zhang if (a->diag) { 1933d4002b98SHong Zhang ierr = PetscMalloc1(m,&c->diag);CHKERRQ(ierr); 1934d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 1935d4002b98SHong Zhang for (i=0; i<m; i++) { 1936d4002b98SHong Zhang c->diag[i] = a->diag[i]; 1937d4002b98SHong Zhang } 1938d4002b98SHong Zhang } else c->diag = 0; 1939d4002b98SHong Zhang 1940d4002b98SHong Zhang c->solve_work = 0; 1941d4002b98SHong Zhang c->saved_values = 0; 1942d4002b98SHong Zhang c->idiag = 0; 1943d4002b98SHong Zhang c->ssor_work = 0; 1944d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern; 1945d4002b98SHong Zhang c->free_val = PETSC_TRUE; 1946d4002b98SHong Zhang c->free_colidx = PETSC_TRUE; 1947d4002b98SHong Zhang 1948d4002b98SHong Zhang c->maxallocmat = a->maxallocmat; 1949d4002b98SHong Zhang c->maxallocrow = a->maxallocrow; 1950d4002b98SHong Zhang c->rlenmax = a->rlenmax; 1951d4002b98SHong Zhang c->nz = a->nz; 1952d4002b98SHong Zhang C->preallocated = PETSC_TRUE; 1953d4002b98SHong Zhang 1954d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt; 1955d4002b98SHong Zhang C->nonzerostate = A->nonzerostate; 1956d4002b98SHong Zhang 1957d4002b98SHong Zhang ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 1958d4002b98SHong Zhang PetscFunctionReturn(0); 1959d4002b98SHong Zhang } 1960d4002b98SHong Zhang 1961d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B) 1962d4002b98SHong Zhang { 1963d4002b98SHong Zhang PetscErrorCode ierr; 1964d4002b98SHong Zhang 1965d4002b98SHong Zhang PetscFunctionBegin; 1966d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr); 1967d4002b98SHong Zhang ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 1968d4002b98SHong Zhang if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) { 1969d4002b98SHong Zhang ierr = MatSetBlockSizesFromMats(*B,A,A);CHKERRQ(ierr); 1970d4002b98SHong Zhang } 1971d4002b98SHong Zhang ierr = MatSetType(*B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1972d4002b98SHong Zhang ierr = MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr); 1973d4002b98SHong Zhang PetscFunctionReturn(0); 1974d4002b98SHong Zhang } 1975d4002b98SHong Zhang 1976d4002b98SHong Zhang /*@C 1977d4002b98SHong Zhang MatCreateSeqSELL - Creates a sparse matrix in SELL format. 1978d4002b98SHong Zhang 1979d4002b98SHong Zhang Collective on MPI_Comm 1980d4002b98SHong Zhang 1981d4002b98SHong Zhang Input Parameters: 1982d4002b98SHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 1983d4002b98SHong Zhang . m - number of rows 1984d4002b98SHong Zhang . n - number of columns 1985d4002b98SHong Zhang . rlenmax - maximum number of nonzeros in a row 1986d4002b98SHong Zhang - rlen - array containing the number of nonzeros in the various rows 1987d4002b98SHong Zhang (possibly different for each row) or NULL 1988d4002b98SHong Zhang 1989d4002b98SHong Zhang Output Parameter: 1990d4002b98SHong Zhang . A - the matrix 1991d4002b98SHong Zhang 1992d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1993d4002b98SHong Zhang MatXXXXSetPreallocation() paradgm instead of this routine directly. 1994d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 1995d4002b98SHong Zhang 1996d4002b98SHong Zhang Notes: 1997d4002b98SHong Zhang If nnz is given then nz is ignored 1998d4002b98SHong Zhang 1999d4002b98SHong Zhang Specify the preallocated storage with either rlenmax or rlen (not both). 2000d4002b98SHong Zhang Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory 2001d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 2002d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 2003d4002b98SHong Zhang 2004d4002b98SHong Zhang Level: intermediate 2005d4002b98SHong Zhang 2006d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatCreateSeqSELLWithArrays() 2007d4002b98SHong Zhang 2008d4002b98SHong Zhang @*/ 2009d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A) 2010d4002b98SHong Zhang { 2011d4002b98SHong Zhang PetscErrorCode ierr; 2012d4002b98SHong Zhang 2013d4002b98SHong Zhang PetscFunctionBegin; 2014d4002b98SHong Zhang ierr = MatCreate(comm,A);CHKERRQ(ierr); 2015d4002b98SHong Zhang ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 2016d4002b98SHong Zhang ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr); 2017d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen);CHKERRQ(ierr); 2018d4002b98SHong Zhang PetscFunctionReturn(0); 2019d4002b98SHong Zhang } 2020d4002b98SHong Zhang 2021d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg) 2022d4002b98SHong Zhang { 2023d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data; 2024d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 2025d4002b98SHong Zhang PetscErrorCode ierr; 2026d4002b98SHong Zhang 2027d4002b98SHong Zhang PetscFunctionBegin; 2028d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */ 2029d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) { 2030d4002b98SHong Zhang *flg = PETSC_FALSE; 2031d4002b98SHong Zhang PetscFunctionReturn(0); 2032d4002b98SHong Zhang } 2033d4002b98SHong Zhang /* if the a->colidx are the same */ 2034d4002b98SHong Zhang ierr = PetscMemcmp(a->colidx,b->colidx,a->sliidx[totalslices]*sizeof(PetscInt),flg);CHKERRQ(ierr); 2035d4002b98SHong Zhang if (!*flg) PetscFunctionReturn(0); 2036d4002b98SHong Zhang /* if a->val are the same */ 2037d4002b98SHong Zhang ierr = PetscMemcmp(a->val,b->val,a->sliidx[totalslices]*sizeof(PetscScalar),flg);CHKERRQ(ierr); 2038d4002b98SHong Zhang PetscFunctionReturn(0); 2039d4002b98SHong Zhang } 2040d4002b98SHong Zhang 2041d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A) 2042d4002b98SHong Zhang { 2043d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2044d4002b98SHong Zhang 2045d4002b98SHong Zhang PetscFunctionBegin; 2046d4002b98SHong Zhang a->idiagvalid = PETSC_FALSE; 2047d4002b98SHong Zhang a->ibdiagvalid = PETSC_FALSE; 2048d4002b98SHong Zhang PetscFunctionReturn(0); 2049d4002b98SHong Zhang } 2050d4002b98SHong Zhang 2051d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A) 2052d4002b98SHong Zhang { 2053d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 2054d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2055d4002b98SHong Zhang PetscInt i; 2056d4002b98SHong Zhang PetscScalar *val = a->val; 2057d4002b98SHong Zhang 2058d4002b98SHong Zhang PetscFunctionBegin; 2059d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 2060d4002b98SHong Zhang val[i] = PetscConj(val[i]); 2061d4002b98SHong Zhang } 2062d4002b98SHong Zhang #else 2063d4002b98SHong Zhang PetscFunctionBegin; 2064d4002b98SHong Zhang #endif 2065d4002b98SHong Zhang PetscFunctionReturn(0); 2066d4002b98SHong Zhang } 2067