1d4002b98SHong Zhang 2d4002b98SHong Zhang /* 3d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format. 4d4002b98SHong Zhang */ 5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/ 6d4002b98SHong Zhang #include <petscblaslapack.h> 7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h> 85f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 94243e2ceSHong Zhang 10d4002b98SHong Zhang #include <immintrin.h> 11d4002b98SHong Zhang 12d4002b98SHong Zhang #if !defined(_MM_SCALE_8) 13d4002b98SHong Zhang #define _MM_SCALE_8 8 14d4002b98SHong Zhang #endif 15d4002b98SHong Zhang 16d4002b98SHong Zhang #if defined(__AVX512F__) 17d4002b98SHong Zhang /* these do not work 18d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx); 19d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval); 20d4002b98SHong Zhang */ 21d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 22d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \ 23ef588d5cSRichard Tran Mills vec_idx = _mm256_loadu_si256((__m256i const*)acolidx); \ 24ef588d5cSRichard Tran Mills vec_vals = _mm512_loadu_pd(aval); \ 25d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \ 26a48a6482SHong Zhang vec_y = _mm512_fmadd_pd(vec_x,vec_vals,vec_y) 275f70456aSHong Zhang #elif defined(__AVX2__) && defined(__FMA__) 28a48a6482SHong Zhang #define AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 29ef588d5cSRichard Tran Mills vec_vals = _mm256_loadu_pd(aval); \ 30ef588d5cSRichard Tran Mills vec_idx = _mm_loadu_si128((__m128i const*)acolidx); /* SSE2 */ \ 31a48a6482SHong Zhang vec_x = _mm256_i32gather_pd(x,vec_idx,_MM_SCALE_8); \ 32a48a6482SHong Zhang vec_y = _mm256_fmadd_pd(vec_x,vec_vals,vec_y) 33d4002b98SHong Zhang #endif 34d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */ 35d4002b98SHong Zhang 36d4002b98SHong Zhang /*@C 37d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance 38d4002b98SHong Zhang the user should preallocate the matrix storage by setting the parameter nz 39d4002b98SHong Zhang (or the array nnz). By setting these parameters accurately, performance 40d4002b98SHong Zhang during matrix assembly can be increased significantly. 41d4002b98SHong Zhang 42d083f849SBarry Smith Collective 43d4002b98SHong Zhang 44d4002b98SHong Zhang Input Parameters: 45d4002b98SHong Zhang + B - The matrix 46d4002b98SHong Zhang . nz - number of nonzeros per row (same for all rows) 47d4002b98SHong Zhang - nnz - array containing the number of nonzeros in the various rows 48d4002b98SHong Zhang (possibly different for each row) or NULL 49d4002b98SHong Zhang 50d4002b98SHong Zhang Notes: 51d4002b98SHong Zhang If nnz is given then nz is ignored. 52d4002b98SHong Zhang 53d4002b98SHong Zhang Specify the preallocated storage with either nz or nnz (not both). 54d4002b98SHong Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 55d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 56d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 57d4002b98SHong Zhang 58d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 59d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 60d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 61d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 62d4002b98SHong Zhang 63d4002b98SHong Zhang Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix 64d4002b98SHong Zhang entries or columns indices. 65d4002b98SHong Zhang 66c7ee91abSRichard Tran Mills The maximum number of nonzeos in any row should be as accurate as possible. 67c7ee91abSRichard Tran Mills If it is underestimated, you will get bad performance due to reallocation 68d4002b98SHong Zhang (MatSeqXSELLReallocateSELL). 69d4002b98SHong Zhang 70d4002b98SHong Zhang Level: intermediate 71d4002b98SHong Zhang 72d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo() 73d4002b98SHong Zhang 74d4002b98SHong Zhang @*/ 75d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[]) 76d4002b98SHong Zhang { 77d4002b98SHong Zhang PetscErrorCode ierr; 78d4002b98SHong Zhang 79d4002b98SHong Zhang PetscFunctionBegin; 80d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 81d4002b98SHong Zhang PetscValidType(B,1); 82d4002b98SHong Zhang ierr = PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen));CHKERRQ(ierr); 83d4002b98SHong Zhang PetscFunctionReturn(0); 84d4002b98SHong Zhang } 85d4002b98SHong Zhang 86d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[]) 87d4002b98SHong Zhang { 88d4002b98SHong Zhang Mat_SeqSELL *b; 89d4002b98SHong Zhang PetscInt i,j,totalslices; 90d4002b98SHong Zhang PetscBool skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE; 91d4002b98SHong Zhang PetscErrorCode ierr; 92d4002b98SHong Zhang 93d4002b98SHong Zhang PetscFunctionBegin; 94d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE; 95d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) { 96d4002b98SHong Zhang skipallocation = PETSC_TRUE; 97d4002b98SHong Zhang maxallocrow = 0; 98d4002b98SHong Zhang } 99d4002b98SHong Zhang 100d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 101d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 102d4002b98SHong Zhang 103d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */ 104d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5; 105c0aa6a63SJacob Faibussowitsch if (maxallocrow < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %" PetscInt_FMT,maxallocrow); 106d4002b98SHong Zhang if (rlen) { 107d4002b98SHong Zhang for (i=0; i<B->rmap->n; i++) { 108c0aa6a63SJacob Faibussowitsch if (rlen[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,rlen[i]); 109c0aa6a63SJacob Faibussowitsch if (rlen[i] > B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT,i,rlen[i],B->cmap->n); 110d4002b98SHong Zhang } 111d4002b98SHong Zhang } 112d4002b98SHong Zhang 113d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 114d4002b98SHong Zhang 115d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 116d4002b98SHong Zhang 117d4002b98SHong Zhang totalslices = B->rmap->n/8+((B->rmap->n & 0x07)?1:0); /* ceil(n/8) */ 118d4002b98SHong Zhang b->totalslices = totalslices; 119d4002b98SHong Zhang if (!skipallocation) { 120c0aa6a63SJacob Faibussowitsch if (B->rmap->n & 0x07) {ierr = PetscInfo1(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %" PetscInt_FMT ")\n",B->rmap->n);CHKERRQ(ierr);} 121d4002b98SHong Zhang 122d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */ 123d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&b->sliidx);CHKERRQ(ierr); 124d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 125d4002b98SHong Zhang } 126d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */ 127d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10; 128d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1; 129d4002b98SHong Zhang for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow; 130d4002b98SHong Zhang } else { 131d4002b98SHong Zhang maxallocrow = 0; 132d4002b98SHong Zhang b->sliidx[0] = 0; 133d4002b98SHong Zhang for (i=1; i<totalslices; i++) { 134d4002b98SHong Zhang b->sliidx[i] = 0; 135d4002b98SHong Zhang for (j=0;j<8;j++) { 136d4002b98SHong Zhang b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]); 137d4002b98SHong Zhang } 138d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i],maxallocrow); 139c73702f5SBarry Smith ierr = PetscIntSumError(b->sliidx[i-1],8*b->sliidx[i],&b->sliidx[i]);CHKERRQ(ierr); 140d4002b98SHong Zhang } 141d4002b98SHong Zhang /* last slice */ 142d4002b98SHong Zhang b->sliidx[totalslices] = 0; 143d4002b98SHong Zhang for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]); 144d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow); 145d4002b98SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices]; 146d4002b98SHong Zhang } 147d4002b98SHong Zhang 148d4002b98SHong Zhang /* allocate space for val, colidx, rlen */ 149d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */ 150d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(B,&b->val,&b->colidx);CHKERRQ(ierr); 151d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */ 152d4002b98SHong Zhang ierr = PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx);CHKERRQ(ierr); 153d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 154d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */ 155d4002b98SHong Zhang ierr = PetscCalloc1(8*totalslices,&b->rlen);CHKERRQ(ierr); 156d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt));CHKERRQ(ierr); 157d4002b98SHong Zhang 158d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE; 159d4002b98SHong Zhang b->free_val = PETSC_TRUE; 160d4002b98SHong Zhang b->free_colidx = PETSC_TRUE; 161d4002b98SHong Zhang } else { 162d4002b98SHong Zhang b->free_val = PETSC_FALSE; 163d4002b98SHong Zhang b->free_colidx = PETSC_FALSE; 164d4002b98SHong Zhang } 165d4002b98SHong Zhang 166d4002b98SHong Zhang b->nz = 0; 167d4002b98SHong Zhang b->maxallocrow = maxallocrow; 168d4002b98SHong Zhang b->rlenmax = maxallocrow; 169d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices]; 170d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat; 171d4002b98SHong Zhang if (realalloc) { 172d4002b98SHong Zhang ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 173d4002b98SHong Zhang } 174d4002b98SHong Zhang PetscFunctionReturn(0); 175d4002b98SHong Zhang } 176d4002b98SHong Zhang 1776108893eSStefano Zampini PetscErrorCode MatGetRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1786108893eSStefano Zampini { 1796108893eSStefano Zampini Mat_SeqSELL *a = (Mat_SeqSELL*)A->data; 1806108893eSStefano Zampini PetscInt shift; 1816108893eSStefano Zampini 1826108893eSStefano Zampini PetscFunctionBegin; 183c0aa6a63SJacob Faibussowitsch if (row < 0 || row >= A->rmap->n) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " out of range",row); 1846108893eSStefano Zampini if (nz) *nz = a->rlen[row]; 1856108893eSStefano Zampini shift = a->sliidx[row>>3]+(row&0x07); 1866108893eSStefano Zampini if (!a->getrowcols) { 1876108893eSStefano Zampini PetscErrorCode ierr; 1886108893eSStefano Zampini 1896108893eSStefano Zampini ierr = PetscMalloc2(a->rlenmax,&a->getrowcols,a->rlenmax,&a->getrowvals);CHKERRQ(ierr); 1906108893eSStefano Zampini } 1916108893eSStefano Zampini if (idx) { 1926108893eSStefano Zampini PetscInt j; 1936108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift+8*j]; 1946108893eSStefano Zampini *idx = a->getrowcols; 1956108893eSStefano Zampini } 1966108893eSStefano Zampini if (v) { 1976108893eSStefano Zampini PetscInt j; 1986108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowvals[j] = a->val[shift+8*j]; 1996108893eSStefano Zampini *v = a->getrowvals; 2006108893eSStefano Zampini } 2016108893eSStefano Zampini PetscFunctionReturn(0); 2026108893eSStefano Zampini } 2036108893eSStefano Zampini 2046108893eSStefano Zampini PetscErrorCode MatRestoreRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 2056108893eSStefano Zampini { 2066108893eSStefano Zampini PetscFunctionBegin; 2076108893eSStefano Zampini PetscFunctionReturn(0); 2086108893eSStefano Zampini } 2096108893eSStefano Zampini 210d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 211d4002b98SHong Zhang { 212d4002b98SHong Zhang Mat B; 213d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 214e3f1f374SStefano Zampini PetscInt i; 215d4002b98SHong Zhang PetscErrorCode ierr; 216d4002b98SHong Zhang 217d4002b98SHong Zhang PetscFunctionBegin; 218ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 219ad013a7bSRichard Tran Mills B = *newmat; 220e3f1f374SStefano Zampini ierr = MatZeroEntries(B);CHKERRQ(ierr); 221ad013a7bSRichard Tran Mills } else { 222d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 223d4002b98SHong Zhang ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 224d4002b98SHong Zhang ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 225d4002b98SHong Zhang ierr = MatSeqAIJSetPreallocation(B,0,a->rlen);CHKERRQ(ierr); 226ad013a7bSRichard Tran Mills } 227d4002b98SHong Zhang 228e3f1f374SStefano Zampini for (i=0; i<A->rmap->n; i++) { 229e108cb99SStefano Zampini PetscInt nz = 0,*cols = NULL; 230e108cb99SStefano Zampini PetscScalar *vals = NULL; 231e3f1f374SStefano Zampini 232e3f1f374SStefano Zampini ierr = MatGetRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr); 233e3f1f374SStefano Zampini ierr = MatSetValues(B,1,&i,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 234e3f1f374SStefano Zampini ierr = MatRestoreRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr); 235d4002b98SHong Zhang } 236e3f1f374SStefano Zampini 237d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 238d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 240d4002b98SHong Zhang 241d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 242d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 243d4002b98SHong Zhang } else { 244d4002b98SHong Zhang *newmat = B; 245d4002b98SHong Zhang } 246d4002b98SHong Zhang PetscFunctionReturn(0); 247d4002b98SHong Zhang } 248d4002b98SHong Zhang 249d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h> 250d4002b98SHong Zhang 251d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 252d4002b98SHong Zhang { 253d4002b98SHong Zhang Mat B; 254d4002b98SHong Zhang Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data; 255d4002b98SHong Zhang PetscInt *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols; 256d4002b98SHong Zhang const PetscInt *cols; 257d4002b98SHong Zhang const PetscScalar *vals; 258d4002b98SHong Zhang PetscErrorCode ierr; 259d4002b98SHong Zhang 260d4002b98SHong Zhang PetscFunctionBegin; 261ad013a7bSRichard Tran Mills 262ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 263ad013a7bSRichard Tran Mills B = *newmat; 264ad013a7bSRichard Tran Mills } else { 265*d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) || !a->ilen) { 266d4002b98SHong Zhang ierr = PetscMalloc1(m,&rowlengths);CHKERRQ(ierr); 267d4002b98SHong Zhang for (i=0; i<m; i++) { 268d4002b98SHong Zhang rowlengths[i] = ai[i+1] - ai[i]; 269d4002b98SHong Zhang } 270*d5e5b2e5SBarry Smith } 271*d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) && a->ilen) { 272*d5e5b2e5SBarry Smith PetscBool eq; 273*d5e5b2e5SBarry Smith ierr = PetscMemcmp(rowlengths,a->ilen,m*sizeof(PetscInt),&eq);CHKERRQ(ierr); 274*d5e5b2e5SBarry Smith if (!eq) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"SeqAIJ ilen array incorrect"); 275*d5e5b2e5SBarry Smith ierr = PetscFree(rowlengths);CHKERRQ(ierr); 276*d5e5b2e5SBarry Smith rowlengths = a->ilen; 277*d5e5b2e5SBarry Smith } else if (a->ilen) rowlengths = a->ilen; 278d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 279d4002b98SHong Zhang ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr); 280d4002b98SHong Zhang ierr = MatSetType(B,MATSEQSELL);CHKERRQ(ierr); 281d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(B,0,rowlengths);CHKERRQ(ierr); 282*d5e5b2e5SBarry Smith if (rowlengths != a->ilen) {ierr = PetscFree(rowlengths);CHKERRQ(ierr);} 283ad013a7bSRichard Tran Mills } 284d4002b98SHong Zhang 285d4002b98SHong Zhang for (row=0; row<m; row++) { 286*d5e5b2e5SBarry Smith ierr = MatGetRow_SeqAIJ(A,row,&ncols,(PetscInt**)&cols,(PetscScalar**)&vals);CHKERRQ(ierr); 287*d5e5b2e5SBarry Smith ierr = MatSetValues_SeqSELL(B,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 288*d5e5b2e5SBarry Smith ierr = MatRestoreRow_SeqAIJ(A,row,&ncols,(PetscInt**)&cols,(PetscScalar**)&vals);CHKERRQ(ierr); 289d4002b98SHong Zhang } 290d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 291d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 292d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 293d4002b98SHong Zhang 294d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 295d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 296d4002b98SHong Zhang } else { 297d4002b98SHong Zhang *newmat = B; 298d4002b98SHong Zhang } 299d4002b98SHong Zhang PetscFunctionReturn(0); 300d4002b98SHong Zhang } 301d4002b98SHong Zhang 302d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy) 303d4002b98SHong Zhang { 304d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 305d4002b98SHong Zhang PetscScalar *y; 306d4002b98SHong Zhang const PetscScalar *x; 307d4002b98SHong Zhang const MatScalar *aval=a->val; 308d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 309d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 3107285fed1SHong Zhang PetscInt i,j; 311d4002b98SHong Zhang PetscErrorCode ierr; 312d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 313d4002b98SHong Zhang __m512d vec_x,vec_y,vec_vals; 314d4002b98SHong Zhang __m256i vec_idx; 315d4002b98SHong Zhang __mmask8 mask; 316d4002b98SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 317d4002b98SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 3185f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 319a48a6482SHong Zhang __m128i vec_idx; 320a48a6482SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 321a48a6482SHong Zhang MatScalar yval; 322a48a6482SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 32321cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 324d4002b98SHong Zhang __m128d vec_x_tmp; 325d4002b98SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 326d4002b98SHong Zhang MatScalar yval; 327d4002b98SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 328d4002b98SHong Zhang #else 329d4002b98SHong Zhang PetscScalar sum[8]; 330d4002b98SHong Zhang #endif 331d4002b98SHong Zhang 332d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 333d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 334d4002b98SHong Zhang #endif 335d4002b98SHong Zhang 336d4002b98SHong Zhang PetscFunctionBegin; 337d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 338d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 339d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 340d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 341d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 342d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 343d4002b98SHong Zhang 344d4002b98SHong Zhang vec_y = _mm512_setzero_pd(); 345d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd(); 346d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd(); 347d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd(); 348d4002b98SHong Zhang 34938efe8efSHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 350d4002b98SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 351d4002b98SHong Zhang case 3: 352d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 353d4002b98SHong Zhang acolidx += 8; aval += 8; 354d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 355d4002b98SHong Zhang acolidx += 8; aval += 8; 356d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 357d4002b98SHong Zhang acolidx += 8; aval += 8; 358d4002b98SHong Zhang j += 3; 359d4002b98SHong Zhang break; 360d4002b98SHong Zhang case 2: 361d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 362d4002b98SHong Zhang acolidx += 8; aval += 8; 363d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 364d4002b98SHong Zhang acolidx += 8; aval += 8; 365d4002b98SHong Zhang j += 2; 366d4002b98SHong Zhang break; 367d4002b98SHong Zhang case 1: 368d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 369d4002b98SHong Zhang acolidx += 8; aval += 8; 370d4002b98SHong Zhang j += 1; 371d4002b98SHong Zhang break; 372d4002b98SHong Zhang } 373d4002b98SHong Zhang #pragma novector 374d4002b98SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 375d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 376d4002b98SHong Zhang acolidx += 8; aval += 8; 377d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 378d4002b98SHong Zhang acolidx += 8; aval += 8; 379d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 380d4002b98SHong Zhang acolidx += 8; aval += 8; 381d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 382d4002b98SHong Zhang acolidx += 8; aval += 8; 383d4002b98SHong Zhang } 384d4002b98SHong Zhang 385d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 386d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 387d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 388d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 389d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 390ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&y[8*i],mask,vec_y); 391d4002b98SHong Zhang } else { 392ef588d5cSRichard Tran Mills _mm512_storeu_pd(&y[8*i],vec_y); 393d4002b98SHong Zhang } 394d4002b98SHong Zhang } 3955f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 396a48a6482SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 397a48a6482SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 398a48a6482SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 399a48a6482SHong Zhang 400a48a6482SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 401a48a6482SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 402a48a6482SHong Zhang rows_left = A->rmap->n - 8*i; 403a48a6482SHong Zhang for (r=0; r<rows_left; ++r) { 404a48a6482SHong Zhang yval = (MatScalar)0; 405a48a6482SHong Zhang row = 8*i + r; 406a48a6482SHong Zhang nnz_in_row = a->rlen[row]; 407a48a6482SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 408a48a6482SHong Zhang y[row] = yval; 409a48a6482SHong Zhang } 410a48a6482SHong Zhang break; 411a48a6482SHong Zhang } 412a48a6482SHong Zhang 413a48a6482SHong Zhang vec_y = _mm256_setzero_pd(); 414a48a6482SHong Zhang vec_y2 = _mm256_setzero_pd(); 415a48a6482SHong Zhang 416a48a6482SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 417a48a6482SHong Zhang #pragma novector 418a48a6482SHong Zhang #pragma unroll(2) 419a48a6482SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 420a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 421a48a6482SHong Zhang aval += 4; acolidx += 4; 422a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y2); 423a48a6482SHong Zhang aval += 4; acolidx += 4; 424a48a6482SHong Zhang } 425a48a6482SHong Zhang 426ef588d5cSRichard Tran Mills _mm256_storeu_pd(y+i*8,vec_y); 427ef588d5cSRichard Tran Mills _mm256_storeu_pd(y+i*8+4,vec_y2); 428a48a6482SHong Zhang } 42921cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 430d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 431d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 432d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 433d4002b98SHong Zhang 434d4002b98SHong Zhang vec_y = _mm256_setzero_pd(); 435d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd(); 436d4002b98SHong Zhang 437d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 438d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 439d4002b98SHong Zhang rows_left = A->rmap->n - 8*i; 440d4002b98SHong Zhang for (r=0; r<rows_left; ++r) { 441d4002b98SHong Zhang yval = (MatScalar)0; 442d4002b98SHong Zhang row = 8*i + r; 443d4002b98SHong Zhang nnz_in_row = a->rlen[row]; 444d4002b98SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]]; 445d4002b98SHong Zhang y[row] = yval; 446d4002b98SHong Zhang } 447d4002b98SHong Zhang break; 448d4002b98SHong Zhang } 449d4002b98SHong Zhang 450d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 451a48a6482SHong Zhang #pragma novector 452a48a6482SHong Zhang #pragma unroll(2) 4537285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 454d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 455d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 456d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 457d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 458d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 459d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 460d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 461d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 462d4002b98SHong Zhang aval += 4; 463d4002b98SHong Zhang 464d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 465d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 466d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 467d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 468d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 469d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 470d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 471d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 472d4002b98SHong Zhang aval += 4; 473d4002b98SHong Zhang } 474d4002b98SHong Zhang 475d4002b98SHong Zhang _mm256_storeu_pd(y + i*8, vec_y); 476d4002b98SHong Zhang _mm256_storeu_pd(y + i*8 + 4, vec_y2); 477d4002b98SHong Zhang } 478d4002b98SHong Zhang #else 479d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 480d4002b98SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 481d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 482d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 483d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 484d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 485d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 486d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 487d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 488d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 489d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 490d4002b98SHong Zhang } 491d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 492d4002b98SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j]; 493d4002b98SHong Zhang } else { 4947285fed1SHong Zhang for (j=0; j<8; j++) y[8*i+j] = sum[j]; 495d4002b98SHong Zhang } 496d4002b98SHong Zhang } 497d4002b98SHong Zhang #endif 498d4002b98SHong Zhang 499d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz-a->nonzerorowcnt);CHKERRQ(ierr); /* theoretical minimal FLOPs */ 500d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 501d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 502d4002b98SHong Zhang PetscFunctionReturn(0); 503d4002b98SHong Zhang } 504d4002b98SHong Zhang 505d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h> 506d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz) 507d4002b98SHong Zhang { 508d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 509d4002b98SHong Zhang PetscScalar *y,*z; 510d4002b98SHong Zhang const PetscScalar *x; 511d4002b98SHong Zhang const MatScalar *aval=a->val; 512d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 513d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 514d4002b98SHong Zhang PetscInt i,j; 515d4002b98SHong Zhang PetscErrorCode ierr; 516d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5177285fed1SHong Zhang __m512d vec_x,vec_y,vec_vals; 518d4002b98SHong Zhang __m256i vec_idx; 519d4002b98SHong Zhang __mmask8 mask; 5207285fed1SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 5217285fed1SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 52221cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5237285fed1SHong Zhang __m128d vec_x_tmp; 5247285fed1SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 5257285fed1SHong Zhang MatScalar yval; 5267285fed1SHong Zhang PetscInt r,row,nnz_in_row; 527d4002b98SHong Zhang #else 528d4002b98SHong Zhang PetscScalar sum[8]; 529d4002b98SHong Zhang #endif 530d4002b98SHong Zhang 531d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 532d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 533d4002b98SHong Zhang #endif 534d4002b98SHong Zhang 535d4002b98SHong Zhang PetscFunctionBegin; 536d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 537d4002b98SHong Zhang ierr = VecGetArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 538d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5397285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 5407285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5417285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5427285fed1SHong Zhang 543d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 544d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 545ef588d5cSRichard Tran Mills vec_y = _mm512_mask_loadu_pd(vec_y,mask,&y[8*i]); 5467285fed1SHong Zhang } else { 547ef588d5cSRichard Tran Mills vec_y = _mm512_loadu_pd(&y[8*i]); 5487285fed1SHong Zhang } 5497285fed1SHong Zhang vec_y2 = _mm512_setzero_pd(); 5507285fed1SHong Zhang vec_y3 = _mm512_setzero_pd(); 5517285fed1SHong Zhang vec_y4 = _mm512_setzero_pd(); 5527285fed1SHong Zhang 5537285fed1SHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 5547285fed1SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 5557285fed1SHong Zhang case 3: 5567285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5577285fed1SHong Zhang acolidx += 8; aval += 8; 5587285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5597285fed1SHong Zhang acolidx += 8; aval += 8; 5607285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5617285fed1SHong Zhang acolidx += 8; aval += 8; 5627285fed1SHong Zhang j += 3; 5637285fed1SHong Zhang break; 5647285fed1SHong Zhang case 2: 5657285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5667285fed1SHong Zhang acolidx += 8; aval += 8; 5677285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5687285fed1SHong Zhang acolidx += 8; aval += 8; 5697285fed1SHong Zhang j += 2; 5707285fed1SHong Zhang break; 5717285fed1SHong Zhang case 1: 5727285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5737285fed1SHong Zhang acolidx += 8; aval += 8; 5747285fed1SHong Zhang j += 1; 5757285fed1SHong Zhang break; 5767285fed1SHong Zhang } 5777285fed1SHong Zhang #pragma novector 5787285fed1SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 5797285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5807285fed1SHong Zhang acolidx += 8; aval += 8; 5817285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5827285fed1SHong Zhang acolidx += 8; aval += 8; 5837285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5847285fed1SHong Zhang acolidx += 8; aval += 8; 5857285fed1SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 5867285fed1SHong Zhang acolidx += 8; aval += 8; 5877285fed1SHong Zhang } 5887285fed1SHong Zhang 5897285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 5907285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 5917285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 5927285fed1SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 593ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&z[8*i],mask,vec_y); 594d4002b98SHong Zhang } else { 595ef588d5cSRichard Tran Mills _mm512_storeu_pd(&z[8*i],vec_y); 596d4002b98SHong Zhang } 5977285fed1SHong Zhang } 59821cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5997285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 6007285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 6017285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 6027285fed1SHong Zhang 6037285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 6047285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6057285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 6067285fed1SHong Zhang row = 8*i + r; 6077285fed1SHong Zhang yval = (MatScalar)0.0; 6087285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6097285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 6107285fed1SHong Zhang z[row] = y[row] + yval; 6117285fed1SHong Zhang } 6127285fed1SHong Zhang break; 6137285fed1SHong Zhang } 6147285fed1SHong Zhang 6157285fed1SHong Zhang vec_y = _mm256_loadu_pd(y+8*i); 6167285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y+8*i+4); 6177285fed1SHong Zhang 6187285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 6197285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 6207285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6217285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6227285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6237285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6247285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6257285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6267285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6277285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 6287285fed1SHong Zhang aval += 4; 6297285fed1SHong Zhang 6307285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6317285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6327285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6337285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6347285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6357285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6367285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6377285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 6387285fed1SHong Zhang aval += 4; 6397285fed1SHong Zhang } 6407285fed1SHong Zhang 6417285fed1SHong Zhang _mm256_storeu_pd(z+i*8,vec_y); 6427285fed1SHong Zhang _mm256_storeu_pd(z+i*8+4,vec_y2); 6437285fed1SHong Zhang } 644d4002b98SHong Zhang #else 6457285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 6467285fed1SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 647d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 648d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 649d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 650d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 651d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 652d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 653d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 654d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 655d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 656d4002b98SHong Zhang } 6577285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6587285fed1SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j]; 659d4002b98SHong Zhang } else { 6607285fed1SHong Zhang for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j]; 6617285fed1SHong Zhang } 662d4002b98SHong Zhang } 663d4002b98SHong Zhang #endif 664d4002b98SHong Zhang 665d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 666d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 667d4002b98SHong Zhang ierr = VecRestoreArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 668d4002b98SHong Zhang PetscFunctionReturn(0); 669d4002b98SHong Zhang } 670d4002b98SHong Zhang 671d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy) 672d4002b98SHong Zhang { 673d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 674d4002b98SHong Zhang PetscScalar *y; 675d4002b98SHong Zhang const PetscScalar *x; 676d4002b98SHong Zhang const MatScalar *aval=a->val; 677d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 6787285fed1SHong Zhang PetscInt i,j,r,row,nnz_in_row,totalslices=a->totalslices; 679d4002b98SHong Zhang PetscErrorCode ierr; 680d4002b98SHong Zhang 681d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 682d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 683d4002b98SHong Zhang #endif 684d4002b98SHong Zhang 685d4002b98SHong Zhang PetscFunctionBegin; 6869fc32365SStefano Zampini if (A->symmetric) { 6879fc32365SStefano Zampini ierr = MatMultAdd_SeqSELL(A,xx,zz,yy);CHKERRQ(ierr); 6889fc32365SStefano Zampini PetscFunctionReturn(0); 6899fc32365SStefano Zampini } 690d4002b98SHong Zhang if (zz != yy) { ierr = VecCopy(zz,yy);CHKERRQ(ierr); } 691d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 692d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 693d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 6947285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6957285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 6967285fed1SHong Zhang row = 8*i + r; 6977285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6987285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row]; 6997285fed1SHong Zhang } 7007285fed1SHong Zhang break; 7017285fed1SHong Zhang } 7027285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 7037285fed1SHong Zhang y[acolidx[j]] += aval[j] * x[8*i]; 7047285fed1SHong Zhang y[acolidx[j+1]] += aval[j+1] * x[8*i+1]; 7057285fed1SHong Zhang y[acolidx[j+2]] += aval[j+2] * x[8*i+2]; 7067285fed1SHong Zhang y[acolidx[j+3]] += aval[j+3] * x[8*i+3]; 7077285fed1SHong Zhang y[acolidx[j+4]] += aval[j+4] * x[8*i+4]; 7087285fed1SHong Zhang y[acolidx[j+5]] += aval[j+5] * x[8*i+5]; 7097285fed1SHong Zhang y[acolidx[j+6]] += aval[j+6] * x[8*i+6]; 7107285fed1SHong Zhang y[acolidx[j+7]] += aval[j+7] * x[8*i+7]; 711d4002b98SHong Zhang } 712d4002b98SHong Zhang } 713d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->sliidx[a->totalslices]);CHKERRQ(ierr); 714d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 715d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 716d4002b98SHong Zhang PetscFunctionReturn(0); 717d4002b98SHong Zhang } 718d4002b98SHong Zhang 719d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy) 720d4002b98SHong Zhang { 721d4002b98SHong Zhang PetscErrorCode ierr; 722d4002b98SHong Zhang 723d4002b98SHong Zhang PetscFunctionBegin; 7249fc32365SStefano Zampini if (A->symmetric) { 7259fc32365SStefano Zampini ierr = MatMult_SeqSELL(A,xx,yy);CHKERRQ(ierr); 7269fc32365SStefano Zampini } else { 727d4002b98SHong Zhang ierr = VecSet(yy,0.0);CHKERRQ(ierr); 728d4002b98SHong Zhang ierr = MatMultTransposeAdd_SeqSELL(A,xx,yy,yy);CHKERRQ(ierr); 7299fc32365SStefano Zampini } 730d4002b98SHong Zhang PetscFunctionReturn(0); 731d4002b98SHong Zhang } 732d4002b98SHong Zhang 733d4002b98SHong Zhang /* 734d4002b98SHong Zhang Checks for missing diagonals 735d4002b98SHong Zhang */ 736d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool *missing,PetscInt *d) 737d4002b98SHong Zhang { 738d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 739d4002b98SHong Zhang PetscInt *diag,i; 740994fe344SLisandro Dalcin PetscErrorCode ierr; 741d4002b98SHong Zhang 742d4002b98SHong Zhang PetscFunctionBegin; 743d4002b98SHong Zhang *missing = PETSC_FALSE; 744d4002b98SHong Zhang if (A->rmap->n > 0 && !(a->colidx)) { 745d4002b98SHong Zhang *missing = PETSC_TRUE; 746d4002b98SHong Zhang if (d) *d = 0; 747994fe344SLisandro Dalcin ierr = PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");CHKERRQ(ierr); 748d4002b98SHong Zhang } else { 749d4002b98SHong Zhang diag = a->diag; 750d4002b98SHong Zhang for (i=0; i<A->rmap->n; i++) { 751d4002b98SHong Zhang if (diag[i] == -1) { 752d4002b98SHong Zhang *missing = PETSC_TRUE; 753d4002b98SHong Zhang if (d) *d = i; 754c0aa6a63SJacob Faibussowitsch ierr = PetscInfo1(A,"Matrix is missing diagonal number %" PetscInt_FMT "\n",i);CHKERRQ(ierr); 755d4002b98SHong Zhang break; 756d4002b98SHong Zhang } 757d4002b98SHong Zhang } 758d4002b98SHong Zhang } 759d4002b98SHong Zhang PetscFunctionReturn(0); 760d4002b98SHong Zhang } 761d4002b98SHong Zhang 762d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A) 763d4002b98SHong Zhang { 764d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 765d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 766d4002b98SHong Zhang PetscErrorCode ierr; 767d4002b98SHong Zhang 768d4002b98SHong Zhang PetscFunctionBegin; 769d4002b98SHong Zhang if (!a->diag) { 770d4002b98SHong Zhang ierr = PetscMalloc1(m,&a->diag);CHKERRQ(ierr); 771d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr); 772d4002b98SHong Zhang a->free_diag = PETSC_TRUE; 773d4002b98SHong Zhang } 774d4002b98SHong Zhang for (i=0; i<m; i++) { /* loop over rows */ 775d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 776d4002b98SHong Zhang a->diag[i] = -1; 777d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 778d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 779d4002b98SHong Zhang a->diag[i] = shift+j*8; 780d4002b98SHong Zhang break; 781d4002b98SHong Zhang } 782d4002b98SHong Zhang } 783d4002b98SHong Zhang } 784d4002b98SHong Zhang PetscFunctionReturn(0); 785d4002b98SHong Zhang } 786d4002b98SHong Zhang 787d4002b98SHong Zhang /* 788d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways 789d4002b98SHong Zhang */ 790d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift) 791d4002b98SHong Zhang { 792d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*) A->data; 793d4002b98SHong Zhang PetscInt i,*diag,m = A->rmap->n; 794d4002b98SHong Zhang MatScalar *val = a->val; 795d4002b98SHong Zhang PetscScalar *idiag,*mdiag; 796d4002b98SHong Zhang PetscErrorCode ierr; 797d4002b98SHong Zhang 798d4002b98SHong Zhang PetscFunctionBegin; 799d4002b98SHong Zhang if (a->idiagvalid) PetscFunctionReturn(0); 800d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 801d4002b98SHong Zhang diag = a->diag; 802d4002b98SHong Zhang if (!a->idiag) { 803d4002b98SHong Zhang ierr = PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work);CHKERRQ(ierr); 804d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar));CHKERRQ(ierr); 805d4002b98SHong Zhang val = a->val; 806d4002b98SHong Zhang } 807d4002b98SHong Zhang mdiag = a->mdiag; 808d4002b98SHong Zhang idiag = a->idiag; 809d4002b98SHong Zhang 810d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) { 811d4002b98SHong Zhang for (i=0; i<m; i++) { 812d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 813d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */ 814d4002b98SHong Zhang if (PetscRealPart(fshift)) { 815c0aa6a63SJacob Faibussowitsch ierr = PetscInfo1(A,"Zero diagonal on row %" PetscInt_FMT "\n",i);CHKERRQ(ierr); 816d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 817d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0; 818d4002b98SHong Zhang A->factorerror_zeropivot_row = i; 819c0aa6a63SJacob Faibussowitsch } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %" PetscInt_FMT,i); 820d4002b98SHong Zhang } 821d4002b98SHong Zhang idiag[i] = 1.0/val[diag[i]]; 822d4002b98SHong Zhang } 823d4002b98SHong Zhang ierr = PetscLogFlops(m);CHKERRQ(ierr); 824d4002b98SHong Zhang } else { 825d4002b98SHong Zhang for (i=0; i<m; i++) { 826d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 827d4002b98SHong Zhang idiag[i] = omega/(fshift + val[diag[i]]); 828d4002b98SHong Zhang } 829d4002b98SHong Zhang ierr = PetscLogFlops(2.0*m);CHKERRQ(ierr); 830d4002b98SHong Zhang } 831d4002b98SHong Zhang a->idiagvalid = PETSC_TRUE; 832d4002b98SHong Zhang PetscFunctionReturn(0); 833d4002b98SHong Zhang } 834d4002b98SHong Zhang 835d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A) 836d4002b98SHong Zhang { 837d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 838d4002b98SHong Zhang PetscErrorCode ierr; 839d4002b98SHong Zhang 840d4002b98SHong Zhang PetscFunctionBegin; 841580bdb30SBarry Smith ierr = PetscArrayzero(a->val,a->sliidx[a->totalslices]);CHKERRQ(ierr); 842d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 843d4002b98SHong Zhang PetscFunctionReturn(0); 844d4002b98SHong Zhang } 845d4002b98SHong Zhang 846d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A) 847d4002b98SHong Zhang { 848d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 849d4002b98SHong Zhang PetscErrorCode ierr; 850d4002b98SHong Zhang 851d4002b98SHong Zhang PetscFunctionBegin; 852d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 853c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)A,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT,A->rmap->n,A->cmap->n,a->nz); 854d4002b98SHong Zhang #endif 855d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(A,&a->val,&a->colidx);CHKERRQ(ierr); 856d4002b98SHong Zhang ierr = ISDestroy(&a->row);CHKERRQ(ierr); 857d4002b98SHong Zhang ierr = ISDestroy(&a->col);CHKERRQ(ierr); 858d4002b98SHong Zhang ierr = PetscFree(a->diag);CHKERRQ(ierr); 859d4002b98SHong Zhang ierr = PetscFree(a->rlen);CHKERRQ(ierr); 860d4002b98SHong Zhang ierr = PetscFree(a->sliidx);CHKERRQ(ierr); 861d4002b98SHong Zhang ierr = PetscFree3(a->idiag,a->mdiag,a->ssor_work);CHKERRQ(ierr); 862d4002b98SHong Zhang ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 863d4002b98SHong Zhang ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 864d4002b98SHong Zhang ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 8656108893eSStefano Zampini ierr = PetscFree2(a->getrowcols,a->getrowvals);CHKERRQ(ierr); 866d4002b98SHong Zhang 867d4002b98SHong Zhang ierr = PetscFree(A->data);CHKERRQ(ierr); 868d4002b98SHong Zhang 869f4259b30SLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)A,NULL);CHKERRQ(ierr); 870d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr); 871d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 872d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL);CHKERRQ(ierr); 873d4002b98SHong Zhang PetscFunctionReturn(0); 874d4002b98SHong Zhang } 875d4002b98SHong Zhang 876d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg) 877d4002b98SHong Zhang { 878d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 879d4002b98SHong Zhang PetscErrorCode ierr; 880d4002b98SHong Zhang 881d4002b98SHong Zhang PetscFunctionBegin; 882d4002b98SHong Zhang switch (op) { 883d4002b98SHong Zhang case MAT_ROW_ORIENTED: 884d4002b98SHong Zhang a->roworiented = flg; 885d4002b98SHong Zhang break; 886d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 887d4002b98SHong Zhang a->keepnonzeropattern = flg; 888d4002b98SHong Zhang break; 889d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 890d4002b98SHong Zhang a->nonew = (flg ? 0 : 1); 891d4002b98SHong Zhang break; 892d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 893d4002b98SHong Zhang a->nonew = (flg ? -1 : 0); 894d4002b98SHong Zhang break; 895d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 896d4002b98SHong Zhang a->nonew = (flg ? -2 : 0); 897d4002b98SHong Zhang break; 898d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 899d4002b98SHong Zhang a->nounused = (flg ? -1 : 0); 900d4002b98SHong Zhang break; 9018c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 902d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 903d4002b98SHong Zhang case MAT_USE_HASH_TABLE: 904071fcb05SBarry Smith case MAT_SORTED_FULL: 905d4002b98SHong Zhang ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 906d4002b98SHong Zhang break; 907d4002b98SHong Zhang case MAT_SPD: 908d4002b98SHong Zhang case MAT_SYMMETRIC: 909d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 910d4002b98SHong Zhang case MAT_HERMITIAN: 911d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 912d4002b98SHong Zhang /* These options are handled directly by MatSetOption() */ 913d4002b98SHong Zhang break; 914d4002b98SHong Zhang default: 915d4002b98SHong Zhang SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 916d4002b98SHong Zhang } 917d4002b98SHong Zhang PetscFunctionReturn(0); 918d4002b98SHong Zhang } 919d4002b98SHong Zhang 920d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v) 921d4002b98SHong Zhang { 922d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 923d4002b98SHong Zhang PetscInt i,j,n,shift; 924d4002b98SHong Zhang PetscScalar *x,zero=0.0; 925d4002b98SHong Zhang PetscErrorCode ierr; 926d4002b98SHong Zhang 927d4002b98SHong Zhang PetscFunctionBegin; 928d4002b98SHong Zhang ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 929d4002b98SHong Zhang if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 930d4002b98SHong Zhang 931d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) { 932d4002b98SHong Zhang PetscInt *diag=a->diag; 933d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 934d4002b98SHong Zhang for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]]; 935d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 936d4002b98SHong Zhang PetscFunctionReturn(0); 937d4002b98SHong Zhang } 938d4002b98SHong Zhang 939d4002b98SHong Zhang ierr = VecSet(v,zero);CHKERRQ(ierr); 940d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 941d4002b98SHong Zhang for (i=0; i<n; i++) { /* loop over rows */ 942d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 943d4002b98SHong Zhang x[i] = 0; 944d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 945d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 946d4002b98SHong Zhang x[i] = a->val[shift+j*8]; 947d4002b98SHong Zhang break; 948d4002b98SHong Zhang } 949d4002b98SHong Zhang } 950d4002b98SHong Zhang } 951d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 952d4002b98SHong Zhang PetscFunctionReturn(0); 953d4002b98SHong Zhang } 954d4002b98SHong Zhang 955d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr) 956d4002b98SHong Zhang { 957d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 958d4002b98SHong Zhang const PetscScalar *l,*r; 959d4002b98SHong Zhang PetscInt i,j,m,n,row; 960d4002b98SHong Zhang PetscErrorCode ierr; 961d4002b98SHong Zhang 962d4002b98SHong Zhang PetscFunctionBegin; 963d4002b98SHong Zhang if (ll) { 964d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine 965d4002b98SHong Zhang by MatDiagonalScale_MPISELL */ 966d4002b98SHong Zhang ierr = VecGetLocalSize(ll,&m);CHKERRQ(ierr); 967d4002b98SHong Zhang if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length"); 968d4002b98SHong Zhang ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 969d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 970dab86139SHong Zhang if (i == a->totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 971dab86139SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 972dab86139SHong Zhang if (row < (A->rmap->n & 0x07)) a->val[j] *= l[8*i+row]; 973dab86139SHong Zhang } 974dab86139SHong Zhang } else { 975d4002b98SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 976d4002b98SHong Zhang a->val[j] *= l[8*i+row]; 977d4002b98SHong Zhang } 978d4002b98SHong Zhang } 979dab86139SHong Zhang } 980d4002b98SHong Zhang ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 981d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 982d4002b98SHong Zhang } 983d4002b98SHong Zhang if (rr) { 984d4002b98SHong Zhang ierr = VecGetLocalSize(rr,&n);CHKERRQ(ierr); 985d4002b98SHong Zhang if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length"); 986d4002b98SHong Zhang ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr); 987d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 988dab86139SHong Zhang if (i == a->totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 989dab86139SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 990dab86139SHong Zhang if (row < (A->rmap->n & 0x07)) a->val[j] *= r[a->colidx[j]]; 991dab86139SHong Zhang } 992dab86139SHong Zhang } else { 993d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) { 994d4002b98SHong Zhang a->val[j] *= r[a->colidx[j]]; 995d4002b98SHong Zhang } 996d4002b98SHong Zhang } 997dab86139SHong Zhang } 998d4002b98SHong Zhang ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr); 999d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1000d4002b98SHong Zhang } 1001d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1002d4002b98SHong Zhang PetscFunctionReturn(0); 1003d4002b98SHong Zhang } 1004d4002b98SHong Zhang 1005d4002b98SHong Zhang extern PetscErrorCode MatSetValues_SeqSELL(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1006d4002b98SHong Zhang 1007d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 1008d4002b98SHong Zhang { 1009d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1010d4002b98SHong Zhang PetscInt *cp,i,k,low,high,t,row,col,l; 1011d4002b98SHong Zhang PetscInt shift; 1012d4002b98SHong Zhang MatScalar *vp; 1013d4002b98SHong Zhang 1014d4002b98SHong Zhang PetscFunctionBegin; 101568aafef3SStefano Zampini for (k=0; k<m; k++) { /* loop over requested rows */ 1016d4002b98SHong Zhang row = im[k]; 1017d4002b98SHong Zhang if (row<0) continue; 1018c0aa6a63SJacob Faibussowitsch if (PetscUnlikelyDebug(row >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->n-1); 1019d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1020d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1021d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 102268aafef3SStefano Zampini for (l=0; l<n; l++) { /* loop over requested columns */ 1023d4002b98SHong Zhang col = in[l]; 1024d4002b98SHong Zhang if (col<0) continue; 1025c0aa6a63SJacob Faibussowitsch if (PetscUnlikelyDebug(col >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT,col,A->cmap->n-1); 1026d4002b98SHong Zhang high = a->rlen[row]; low = 0; /* assume unsorted */ 1027d4002b98SHong Zhang while (high-low > 5) { 1028d4002b98SHong Zhang t = (low+high)/2; 1029d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1030d4002b98SHong Zhang else low = t; 1031d4002b98SHong Zhang } 1032d4002b98SHong Zhang for (i=low; i<high; i++) { 1033d4002b98SHong Zhang if (*(cp+8*i) > col) break; 1034d4002b98SHong Zhang if (*(cp+8*i) == col) { 1035d4002b98SHong Zhang *v++ = *(vp+8*i); 1036d4002b98SHong Zhang goto finished; 1037d4002b98SHong Zhang } 1038d4002b98SHong Zhang } 1039d4002b98SHong Zhang *v++ = 0.0; 1040d4002b98SHong Zhang finished:; 1041d4002b98SHong Zhang } 1042d4002b98SHong Zhang } 1043d4002b98SHong Zhang PetscFunctionReturn(0); 1044d4002b98SHong Zhang } 1045d4002b98SHong Zhang 1046d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer) 1047d4002b98SHong Zhang { 1048d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1049d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1050d4002b98SHong Zhang const char *name; 1051d4002b98SHong Zhang PetscViewerFormat format; 1052d4002b98SHong Zhang PetscErrorCode ierr; 1053d4002b98SHong Zhang 1054d4002b98SHong Zhang PetscFunctionBegin; 1055d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1056d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) { 1057d4002b98SHong Zhang PetscInt nofinalvalue = 0; 1058d4002b98SHong Zhang /* 1059d4002b98SHong Zhang if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) { 1060d4002b98SHong Zhang nofinalvalue = 1; 1061d4002b98SHong Zhang } 1062d4002b98SHong Zhang */ 1063d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1064c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n",m,A->cmap->n);CHKERRQ(ierr); 1065c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %" PetscInt_FMT " \n",a->nz);CHKERRQ(ierr); 1066d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1067c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%" PetscInt_FMT ",4);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 1068d4002b98SHong Zhang #else 1069c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%" PetscInt_FMT ",3);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 1070d4002b98SHong Zhang #endif 1071d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = [\n");CHKERRQ(ierr); 1072d4002b98SHong Zhang 1073d4002b98SHong Zhang for (i=0; i<m; i++) { 1074d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1075d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1076d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1077c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1078d4002b98SHong Zhang #else 1079c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j]);CHKERRQ(ierr); 1080d4002b98SHong Zhang #endif 1081d4002b98SHong Zhang } 1082d4002b98SHong Zhang } 1083d4002b98SHong Zhang /* 1084d4002b98SHong Zhang if (nofinalvalue) { 1085d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1086c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",m,A->cmap->n,0.,0.);CHKERRQ(ierr); 1087d4002b98SHong Zhang #else 1088c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",m,A->cmap->n,0.0);CHKERRQ(ierr); 1089d4002b98SHong Zhang #endif 1090d4002b98SHong Zhang } 1091d4002b98SHong Zhang */ 1092d4002b98SHong Zhang ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 1093d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name);CHKERRQ(ierr); 1094d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1095d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) { 1096d4002b98SHong Zhang PetscFunctionReturn(0); 1097d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1098d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1099d4002b98SHong Zhang for (i=0; i<m; i++) { 1100c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i);CHKERRQ(ierr); 1101d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1102d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1103d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1104d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1105c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1106d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1107c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1108d4002b98SHong Zhang } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) { 1109c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1110d4002b98SHong Zhang } 1111d4002b98SHong Zhang #else 1112c0aa6a63SJacob Faibussowitsch if (a->val[shift+8*j] != 0.0) {ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);} 1113d4002b98SHong Zhang #endif 1114d4002b98SHong Zhang } 1115d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1116d4002b98SHong Zhang } 1117d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1118d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) { 1119d4002b98SHong Zhang PetscInt cnt=0,jcnt; 1120d4002b98SHong Zhang PetscScalar value; 1121d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1122d4002b98SHong Zhang PetscBool realonly=PETSC_TRUE; 1123d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1124d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) { 1125d4002b98SHong Zhang realonly = PETSC_FALSE; 1126d4002b98SHong Zhang break; 1127d4002b98SHong Zhang } 1128d4002b98SHong Zhang } 1129d4002b98SHong Zhang #endif 1130d4002b98SHong Zhang 1131d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1132d4002b98SHong Zhang for (i=0; i<m; i++) { 1133d4002b98SHong Zhang jcnt = 0; 1134d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1135d4002b98SHong Zhang for (j=0; j<A->cmap->n; j++) { 1136d4002b98SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) { 1137d4002b98SHong Zhang value = a->val[cnt++]; 1138d4002b98SHong Zhang jcnt++; 1139d4002b98SHong Zhang } else { 1140d4002b98SHong Zhang value = 0.0; 1141d4002b98SHong Zhang } 1142d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1143d4002b98SHong Zhang if (realonly) { 1144d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value));CHKERRQ(ierr); 1145d4002b98SHong Zhang } else { 1146d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value));CHKERRQ(ierr); 1147d4002b98SHong Zhang } 1148d4002b98SHong Zhang #else 1149d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value);CHKERRQ(ierr); 1150d4002b98SHong Zhang #endif 1151d4002b98SHong Zhang } 1152d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1153d4002b98SHong Zhang } 1154d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1155d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) { 1156d4002b98SHong Zhang PetscInt fshift=1; 1157d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1158d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1159d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n");CHKERRQ(ierr); 1160d4002b98SHong Zhang #else 1161d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n");CHKERRQ(ierr); 1162d4002b98SHong Zhang #endif 1163c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz);CHKERRQ(ierr); 1164d4002b98SHong Zhang for (i=0; i<m; i++) { 1165d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1166d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1167d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1168c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1169d4002b98SHong Zhang #else 1170c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j]);CHKERRQ(ierr); 1171d4002b98SHong Zhang #endif 1172d4002b98SHong Zhang } 1173d4002b98SHong Zhang } 1174d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 117568aafef3SStefano Zampini } else if (format == PETSC_VIEWER_NATIVE) { 117668aafef3SStefano Zampini for (i=0; i<a->totalslices; i++) { /* loop over slices */ 117768aafef3SStefano Zampini PetscInt row; 1178c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n",i,a->sliidx[i],a->sliidx[i+1]);CHKERRQ(ierr); 117968aafef3SStefano Zampini for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 118068aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX) 118168aafef3SStefano Zampini if (PetscImaginaryPart(a->val[j]) > 0.0) { 1182c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 118368aafef3SStefano Zampini } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1184c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),-(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 118568aafef3SStefano Zampini } else { 1186c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 118768aafef3SStefano Zampini } 118868aafef3SStefano Zampini #else 1189c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g\n",8*i+row,a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 119068aafef3SStefano Zampini #endif 119168aafef3SStefano Zampini } 119268aafef3SStefano Zampini } 1193d4002b98SHong Zhang } else { 1194d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1195d4002b98SHong Zhang if (A->factortype) { 1196d4002b98SHong Zhang for (i=0; i<m; i++) { 1197d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1198c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i);CHKERRQ(ierr); 1199d4002b98SHong Zhang /* L part */ 1200d4002b98SHong Zhang for (j=shift; j<a->diag[i]; j+=8) { 1201d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1202d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) { 1203c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1204d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) { 1205c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1206d4002b98SHong Zhang } else { 1207c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1208d4002b98SHong Zhang } 1209d4002b98SHong Zhang #else 1210c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1211d4002b98SHong Zhang #endif 1212d4002b98SHong Zhang } 1213d4002b98SHong Zhang /* diagonal */ 1214d4002b98SHong Zhang j = a->diag[i]; 1215d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1216d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1217c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]));CHKERRQ(ierr); 1218d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1219c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])));CHKERRQ(ierr); 1220d4002b98SHong Zhang } else { 1221c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]));CHKERRQ(ierr); 1222d4002b98SHong Zhang } 1223d4002b98SHong Zhang #else 1224c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)(1.0/a->val[j]));CHKERRQ(ierr); 1225d4002b98SHong Zhang #endif 1226d4002b98SHong Zhang 1227d4002b98SHong Zhang /* U part */ 1228d4002b98SHong Zhang for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) { 1229d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1230d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1231c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1232d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1233c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1234d4002b98SHong Zhang } else { 1235c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1236d4002b98SHong Zhang } 1237d4002b98SHong Zhang #else 1238c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1239d4002b98SHong Zhang #endif 1240d4002b98SHong Zhang } 1241d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1242d4002b98SHong Zhang } 1243d4002b98SHong Zhang } else { 1244d4002b98SHong Zhang for (i=0; i<m; i++) { 1245d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1246c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i);CHKERRQ(ierr); 1247d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1248d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1249d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1250c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1251d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1252c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1253d4002b98SHong Zhang } else { 1254c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1255d4002b98SHong Zhang } 1256d4002b98SHong Zhang #else 1257c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr); 1258d4002b98SHong Zhang #endif 1259d4002b98SHong Zhang } 1260d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1261d4002b98SHong Zhang } 1262d4002b98SHong Zhang } 1263d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1264d4002b98SHong Zhang } 1265d4002b98SHong Zhang ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 1266d4002b98SHong Zhang PetscFunctionReturn(0); 1267d4002b98SHong Zhang } 1268d4002b98SHong Zhang 1269d4002b98SHong Zhang #include <petscdraw.h> 1270d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa) 1271d4002b98SHong Zhang { 1272d4002b98SHong Zhang Mat A=(Mat)Aa; 1273d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1274d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1275d4002b98SHong Zhang int color; 1276d4002b98SHong Zhang PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1277d4002b98SHong Zhang PetscViewer viewer; 1278d4002b98SHong Zhang PetscViewerFormat format; 1279d4002b98SHong Zhang PetscErrorCode ierr; 1280d4002b98SHong Zhang 1281d4002b98SHong Zhang PetscFunctionBegin; 1282d4002b98SHong Zhang ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 1283d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1284d4002b98SHong Zhang ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 1285d4002b98SHong Zhang 1286d4002b98SHong Zhang /* loop over matrix elements drawing boxes */ 1287d4002b98SHong Zhang 1288d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1289d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1290d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */ 1291d4002b98SHong Zhang color = PETSC_DRAW_BLUE; 1292d4002b98SHong Zhang for (i=0; i<m; i++) { 1293d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1294d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1295d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1296d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1297d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) >= 0.) continue; 1298d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1299d4002b98SHong Zhang } 1300d4002b98SHong Zhang } 1301d4002b98SHong Zhang color = PETSC_DRAW_CYAN; 1302d4002b98SHong Zhang for (i=0; i<m; i++) { 1303d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1304d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1305d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1306d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1307d4002b98SHong Zhang if (a->val[shift+8*j] != 0.) continue; 1308d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1309d4002b98SHong Zhang } 1310d4002b98SHong Zhang } 1311d4002b98SHong Zhang color = PETSC_DRAW_RED; 1312d4002b98SHong Zhang for (i=0; i<m; i++) { 1313d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1314d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1315d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1316d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1317d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) <= 0.) continue; 1318d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1319d4002b98SHong Zhang } 1320d4002b98SHong Zhang } 1321d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1322d4002b98SHong Zhang } else { 1323d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */ 1324d4002b98SHong Zhang /* first determine max of all nonzero values */ 1325d4002b98SHong Zhang PetscReal minv=0.0,maxv=0.0; 1326d4002b98SHong Zhang PetscInt count=0; 1327d4002b98SHong Zhang PetscDraw popup; 1328d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1329d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]); 1330d4002b98SHong Zhang } 1331d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL; 1332d4002b98SHong Zhang ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 1333d4002b98SHong Zhang ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr); 1334d4002b98SHong Zhang 1335d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1336d4002b98SHong Zhang for (i=0; i<m; i++) { 1337d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1338d4002b98SHong Zhang y_l = m - i - 1.0; 1339d4002b98SHong Zhang y_r = y_l + 1.0; 1340d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1341d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; 1342d4002b98SHong Zhang x_r = x_l + 1.0; 1343d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv); 1344d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1345d4002b98SHong Zhang count++; 1346d4002b98SHong Zhang } 1347d4002b98SHong Zhang } 1348d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1349d4002b98SHong Zhang } 1350d4002b98SHong Zhang PetscFunctionReturn(0); 1351d4002b98SHong Zhang } 1352d4002b98SHong Zhang 1353d4002b98SHong Zhang #include <petscdraw.h> 1354d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer) 1355d4002b98SHong Zhang { 1356d4002b98SHong Zhang PetscDraw draw; 1357d4002b98SHong Zhang PetscReal xr,yr,xl,yl,h,w; 1358d4002b98SHong Zhang PetscBool isnull; 1359d4002b98SHong Zhang PetscErrorCode ierr; 1360d4002b98SHong Zhang 1361d4002b98SHong Zhang PetscFunctionBegin; 1362d4002b98SHong Zhang ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1363d4002b98SHong Zhang ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1364d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 1365d4002b98SHong Zhang 1366d4002b98SHong Zhang xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1367d4002b98SHong Zhang xr += w; yr += h; xl = -w; yl = -h; 1368d4002b98SHong Zhang ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1369d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1370d4002b98SHong Zhang ierr = PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A);CHKERRQ(ierr); 1371d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 1372d4002b98SHong Zhang ierr = PetscDrawSave(draw);CHKERRQ(ierr); 1373d4002b98SHong Zhang PetscFunctionReturn(0); 1374d4002b98SHong Zhang } 1375d4002b98SHong Zhang 1376d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer) 1377d4002b98SHong Zhang { 1378d4002b98SHong Zhang PetscBool iascii,isbinary,isdraw; 1379d4002b98SHong Zhang PetscErrorCode ierr; 1380d4002b98SHong Zhang 1381d4002b98SHong Zhang PetscFunctionBegin; 1382d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1383d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1384d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1385d4002b98SHong Zhang if (iascii) { 1386d4002b98SHong Zhang ierr = MatView_SeqSELL_ASCII(A,viewer);CHKERRQ(ierr); 1387d4002b98SHong Zhang } else if (isbinary) { 1388d4002b98SHong Zhang /* ierr = MatView_SeqSELL_Binary(A,viewer);CHKERRQ(ierr); */ 1389d4002b98SHong Zhang } else if (isdraw) { 1390d4002b98SHong Zhang ierr = MatView_SeqSELL_Draw(A,viewer);CHKERRQ(ierr); 1391d4002b98SHong Zhang } 1392d4002b98SHong Zhang PetscFunctionReturn(0); 1393d4002b98SHong Zhang } 1394d4002b98SHong Zhang 1395d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode) 1396d4002b98SHong Zhang { 1397d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1398d4002b98SHong Zhang PetscInt i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k; 1399d4002b98SHong Zhang MatScalar *vp; 1400d4002b98SHong Zhang PetscErrorCode ierr; 1401d4002b98SHong Zhang 1402d4002b98SHong Zhang PetscFunctionBegin; 1403d4002b98SHong Zhang if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1404d4002b98SHong Zhang /* To do: compress out the unused elements */ 1405d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 1406c0aa6a63SJacob Faibussowitsch ierr = PetscInfo6(A,"Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz);CHKERRQ(ierr); 1407c0aa6a63SJacob Faibussowitsch ierr = PetscInfo1(A,"Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n",a->reallocs);CHKERRQ(ierr); 1408c0aa6a63SJacob Faibussowitsch ierr = PetscInfo1(A,"Maximum nonzeros in any row is %" PetscInt_FMT "\n",a->rlenmax);CHKERRQ(ierr); 1409d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */ 1410d4002b98SHong Zhang for (i=0; i<a->totalslices; ++i) { 1411d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */ 1412d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the column indices of the slice */ 1413d4002b98SHong Zhang vp = a->val+shift; /* pointer to the nonzero values of the slice */ 1414d4002b98SHong Zhang for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */ 1415d4002b98SHong Zhang row = 8*i + row_in_slice; 1416d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */ 1417d4002b98SHong Zhang /* 1418d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication. 1419d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded. 1420d4002b98SHong Zhang */ 1421d4002b98SHong Zhang lastcol = 0; 1422d4002b98SHong Zhang if (nrow>0) { /* nonempty row */ 1423d4002b98SHong Zhang lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */ 1424d4002b98SHong Zhang } else if (!row_in_slice) { /* first row of the currect slice is empty */ 1425d4002b98SHong Zhang for (j=1;j<8;j++) { 1426d4002b98SHong Zhang if (a->rlen[8*i+j]) { 1427d4002b98SHong Zhang lastcol = cp[j]; 1428d4002b98SHong Zhang break; 1429d4002b98SHong Zhang } 1430d4002b98SHong Zhang } 1431d4002b98SHong Zhang } else { 1432d4002b98SHong Zhang if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */ 1433d4002b98SHong Zhang } 1434d4002b98SHong Zhang 1435d4002b98SHong Zhang for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) { 1436d4002b98SHong Zhang cp[8*k+row_in_slice] = lastcol; 1437d4002b98SHong Zhang vp[8*k+row_in_slice] = (MatScalar)0; 1438d4002b98SHong Zhang } 1439d4002b98SHong Zhang } 1440d4002b98SHong Zhang } 1441d4002b98SHong Zhang 1442d4002b98SHong Zhang A->info.mallocs += a->reallocs; 1443d4002b98SHong Zhang a->reallocs = 0; 1444d4002b98SHong Zhang 1445d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1446d4002b98SHong Zhang PetscFunctionReturn(0); 1447d4002b98SHong Zhang } 1448d4002b98SHong Zhang 1449d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info) 1450d4002b98SHong Zhang { 1451d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1452d4002b98SHong Zhang 1453d4002b98SHong Zhang PetscFunctionBegin; 1454d4002b98SHong Zhang info->block_size = 1.0; 14553966268fSBarry Smith info->nz_allocated = a->maxallocmat; 14563966268fSBarry Smith info->nz_used = a->sliidx[a->totalslices]; /* include padding zeros */ 14573966268fSBarry Smith info->nz_unneeded = (a->maxallocmat-a->sliidx[a->totalslices]); 14583966268fSBarry Smith info->assemblies = A->num_ass; 14593966268fSBarry Smith info->mallocs = A->info.mallocs; 1460d4002b98SHong Zhang info->memory = ((PetscObject)A)->mem; 1461d4002b98SHong Zhang if (A->factortype) { 1462d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given; 1463d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed; 1464d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs; 1465d4002b98SHong Zhang } else { 1466d4002b98SHong Zhang info->fill_ratio_given = 0; 1467d4002b98SHong Zhang info->fill_ratio_needed = 0; 1468d4002b98SHong Zhang info->factor_mallocs = 0; 1469d4002b98SHong Zhang } 1470d4002b98SHong Zhang PetscFunctionReturn(0); 1471d4002b98SHong Zhang } 1472d4002b98SHong Zhang 1473d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 1474d4002b98SHong Zhang { 1475d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1476d4002b98SHong Zhang PetscInt shift,i,k,l,low,high,t,ii,row,col,nrow; 1477d4002b98SHong Zhang PetscInt *cp,nonew=a->nonew,lastcol=-1; 1478d4002b98SHong Zhang MatScalar *vp,value; 1479d4002b98SHong Zhang PetscErrorCode ierr; 1480d4002b98SHong Zhang 1481d4002b98SHong Zhang PetscFunctionBegin; 1482d4002b98SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 1483d4002b98SHong Zhang row = im[k]; 1484d4002b98SHong Zhang if (row < 0) continue; 1485c0aa6a63SJacob Faibussowitsch if (PetscUnlikelyDebug(row >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->n-1); 1486d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1487d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1488d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 1489d4002b98SHong Zhang nrow = a->rlen[row]; 1490d4002b98SHong Zhang low = 0; 1491d4002b98SHong Zhang high = nrow; 1492d4002b98SHong Zhang 1493d4002b98SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 1494d4002b98SHong Zhang col = in[l]; 1495d4002b98SHong Zhang if (col<0) continue; 1496c0aa6a63SJacob Faibussowitsch if (PetscUnlikelyDebug(col >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT,col,A->cmap->n-1); 1497d4002b98SHong Zhang if (a->roworiented) { 1498d4002b98SHong Zhang value = v[l+k*n]; 1499d4002b98SHong Zhang } else { 1500d4002b98SHong Zhang value = v[k+l*m]; 1501d4002b98SHong Zhang } 1502d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue; 1503d4002b98SHong Zhang 1504d4002b98SHong Zhang /* search in this row for the specified colmun, i indicates the column to be set */ 1505d4002b98SHong Zhang if (col <= lastcol) low = 0; 1506d4002b98SHong Zhang else high = nrow; 1507d4002b98SHong Zhang lastcol = col; 1508d4002b98SHong Zhang while (high-low > 5) { 1509d4002b98SHong Zhang t = (low+high)/2; 1510d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1511d4002b98SHong Zhang else low = t; 1512d4002b98SHong Zhang } 1513d4002b98SHong Zhang for (i=low; i<high; i++) { 1514d4002b98SHong Zhang if (*(cp+i*8) > col) break; 1515d4002b98SHong Zhang if (*(cp+i*8) == col) { 1516d4002b98SHong Zhang if (is == ADD_VALUES) *(vp+i*8) += value; 1517d4002b98SHong Zhang else *(vp+i*8) = value; 1518d4002b98SHong Zhang low = i + 1; 1519d4002b98SHong Zhang goto noinsert; 1520d4002b98SHong Zhang } 1521d4002b98SHong Zhang } 1522d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert; 1523d4002b98SHong Zhang if (nonew == 1) goto noinsert; 1524c0aa6a63SJacob Faibussowitsch if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 1525d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */ 1526d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar); 1527d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */ 1528d4002b98SHong Zhang for (ii=nrow-1; ii>=i; ii--) { 1529d4002b98SHong Zhang *(cp+(ii+1)*8) = *(cp+ii*8); 1530d4002b98SHong Zhang *(vp+(ii+1)*8) = *(vp+ii*8); 1531d4002b98SHong Zhang } 1532d4002b98SHong Zhang a->rlen[row]++; 1533d4002b98SHong Zhang *(cp+i*8) = col; 1534d4002b98SHong Zhang *(vp+i*8) = value; 1535d4002b98SHong Zhang a->nz++; 1536d4002b98SHong Zhang A->nonzerostate++; 1537d4002b98SHong Zhang low = i+1; high++; nrow++; 1538d4002b98SHong Zhang noinsert:; 1539d4002b98SHong Zhang } 1540d4002b98SHong Zhang a->rlen[row] = nrow; 1541d4002b98SHong Zhang } 1542d4002b98SHong Zhang PetscFunctionReturn(0); 1543d4002b98SHong Zhang } 1544d4002b98SHong Zhang 1545d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str) 1546d4002b98SHong Zhang { 1547d4002b98SHong Zhang PetscErrorCode ierr; 1548d4002b98SHong Zhang 1549d4002b98SHong Zhang PetscFunctionBegin; 1550d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 1551d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 1552d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1553d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 1554d4002b98SHong Zhang 1555d4002b98SHong Zhang if (a->sliidx[a->totalslices] != b->sliidx[b->totalslices]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 1556580bdb30SBarry Smith ierr = PetscArraycpy(b->val,a->val,a->sliidx[a->totalslices]);CHKERRQ(ierr); 1557d4002b98SHong Zhang } else { 1558d4002b98SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1559d4002b98SHong Zhang } 1560d4002b98SHong Zhang PetscFunctionReturn(0); 1561d4002b98SHong Zhang } 1562d4002b98SHong Zhang 1563d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A) 1564d4002b98SHong Zhang { 1565d4002b98SHong Zhang PetscErrorCode ierr; 1566d4002b98SHong Zhang 1567d4002b98SHong Zhang PetscFunctionBegin; 1568f4259b30SLisandro Dalcin ierr = MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,NULL);CHKERRQ(ierr); 1569d4002b98SHong Zhang PetscFunctionReturn(0); 1570d4002b98SHong Zhang } 1571d4002b98SHong Zhang 1572d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[]) 1573d4002b98SHong Zhang { 1574d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1575d4002b98SHong Zhang 1576d4002b98SHong Zhang PetscFunctionBegin; 1577d4002b98SHong Zhang *array = a->val; 1578d4002b98SHong Zhang PetscFunctionReturn(0); 1579d4002b98SHong Zhang } 1580d4002b98SHong Zhang 1581d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[]) 1582d4002b98SHong Zhang { 1583d4002b98SHong Zhang PetscFunctionBegin; 1584d4002b98SHong Zhang PetscFunctionReturn(0); 1585d4002b98SHong Zhang } 1586d4002b98SHong Zhang 1587d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A) 1588d4002b98SHong Zhang { 1589d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1590d4002b98SHong Zhang PetscInt i; 1591d4002b98SHong Zhang MatScalar *aval=a->val; 1592d4002b98SHong Zhang 1593d4002b98SHong Zhang PetscFunctionBegin; 1594d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]); 1595d4002b98SHong Zhang PetscFunctionReturn(0); 1596d4002b98SHong Zhang } 1597d4002b98SHong Zhang 1598d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A) 1599d4002b98SHong Zhang { 1600d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1601d4002b98SHong Zhang PetscInt i; 1602d4002b98SHong Zhang MatScalar *aval=a->val; 1603d4002b98SHong Zhang PetscErrorCode ierr; 1604d4002b98SHong Zhang 1605d4002b98SHong Zhang PetscFunctionBegin; 1606d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]); 1607d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1608d4002b98SHong Zhang PetscFunctionReturn(0); 1609d4002b98SHong Zhang } 1610d4002b98SHong Zhang 1611d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha) 1612d4002b98SHong Zhang { 1613d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)inA->data; 1614d4002b98SHong Zhang MatScalar *aval=a->val; 1615d4002b98SHong Zhang PetscScalar oalpha=alpha; 1616d4002b98SHong Zhang PetscBLASInt one=1,size; 1617d4002b98SHong Zhang PetscErrorCode ierr; 1618d4002b98SHong Zhang 1619d4002b98SHong Zhang PetscFunctionBegin; 1620d4002b98SHong Zhang ierr = PetscBLASIntCast(a->sliidx[a->totalslices],&size);CHKERRQ(ierr); 1621d4002b98SHong Zhang PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one)); 1622d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1623d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(inA);CHKERRQ(ierr); 1624d4002b98SHong Zhang PetscFunctionReturn(0); 1625d4002b98SHong Zhang } 1626d4002b98SHong Zhang 1627d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a) 1628d4002b98SHong Zhang { 1629d4002b98SHong Zhang Mat_SeqSELL *y=(Mat_SeqSELL*)Y->data; 1630d4002b98SHong Zhang PetscErrorCode ierr; 1631d4002b98SHong Zhang 1632d4002b98SHong Zhang PetscFunctionBegin; 1633d4002b98SHong Zhang if (!Y->preallocated || !y->nz) { 1634d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(Y,1,NULL);CHKERRQ(ierr); 1635d4002b98SHong Zhang } 1636d4002b98SHong Zhang ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 1637d4002b98SHong Zhang PetscFunctionReturn(0); 1638d4002b98SHong Zhang } 1639d4002b98SHong Zhang 1640d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1641d4002b98SHong Zhang { 1642d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1643d4002b98SHong Zhang PetscScalar *x,sum,*t; 1644f4259b30SLisandro Dalcin const MatScalar *idiag=NULL,*mdiag; 1645d4002b98SHong Zhang const PetscScalar *b,*xb; 1646d4002b98SHong Zhang PetscInt n,m=A->rmap->n,i,j,shift; 1647d4002b98SHong Zhang const PetscInt *diag; 1648d4002b98SHong Zhang PetscErrorCode ierr; 1649d4002b98SHong Zhang 1650d4002b98SHong Zhang PetscFunctionBegin; 1651d4002b98SHong Zhang its = its*lits; 1652d4002b98SHong Zhang 1653d4002b98SHong Zhang if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */ 1654d4002b98SHong Zhang if (!a->idiagvalid) {ierr = MatInvertDiagonal_SeqSELL(A,omega,fshift);CHKERRQ(ierr);} 1655d4002b98SHong Zhang a->fshift = fshift; 1656d4002b98SHong Zhang a->omega = omega; 1657d4002b98SHong Zhang 1658d4002b98SHong Zhang diag = a->diag; 1659d4002b98SHong Zhang t = a->ssor_work; 1660d4002b98SHong Zhang idiag = a->idiag; 1661d4002b98SHong Zhang mdiag = a->mdiag; 1662d4002b98SHong Zhang 1663d4002b98SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1664d4002b98SHong Zhang ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 1665d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */ 1666d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented"); 1667d4002b98SHong Zhang if (flag == SOR_APPLY_LOWER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented"); 1668d4002b98SHong Zhang if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat"); 1669d4002b98SHong Zhang 1670d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 1671d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1672d4002b98SHong Zhang for (i=0; i<m; i++) { 1673d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1674d4002b98SHong Zhang sum = b[i]; 1675d4002b98SHong Zhang n = (diag[i]-shift)/8; 1676d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1677d4002b98SHong Zhang t[i] = sum; 1678d4002b98SHong Zhang x[i] = sum*idiag[i]; 1679d4002b98SHong Zhang } 1680d4002b98SHong Zhang xb = t; 1681d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1682d4002b98SHong Zhang } else xb = b; 1683d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1684d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1685d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1686d4002b98SHong Zhang sum = xb[i]; 1687d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1688d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1689d4002b98SHong Zhang if (xb == b) { 1690d4002b98SHong Zhang x[i] = sum*idiag[i]; 1691d4002b98SHong Zhang } else { 1692d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1693d4002b98SHong Zhang } 1694d4002b98SHong Zhang } 1695d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1696d4002b98SHong Zhang } 1697d4002b98SHong Zhang its--; 1698d4002b98SHong Zhang } 1699d4002b98SHong Zhang while (its--) { 1700d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1701d4002b98SHong Zhang for (i=0; i<m; i++) { 1702d4002b98SHong Zhang /* lower */ 1703d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1704d4002b98SHong Zhang sum = b[i]; 1705d4002b98SHong Zhang n = (diag[i]-shift)/8; 1706d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1707d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */ 1708d4002b98SHong Zhang /* upper */ 1709d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1710d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1711d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1712d4002b98SHong Zhang } 1713d4002b98SHong Zhang xb = t; 1714d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1715d4002b98SHong Zhang } else xb = b; 1716d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1717d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1718d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1719d4002b98SHong Zhang sum = xb[i]; 1720d4002b98SHong Zhang if (xb == b) { 1721d4002b98SHong Zhang /* whole matrix (no checkpointing available) */ 1722d4002b98SHong Zhang n = a->rlen[i]; 1723d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1724d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i]; 1725d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */ 1726d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1727d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1728d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1729d4002b98SHong Zhang } 1730d4002b98SHong Zhang } 1731d4002b98SHong Zhang if (xb == b) { 1732d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1733d4002b98SHong Zhang } else { 1734d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1735d4002b98SHong Zhang } 1736d4002b98SHong Zhang } 1737d4002b98SHong Zhang } 1738d4002b98SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1739d4002b98SHong Zhang ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 1740d4002b98SHong Zhang PetscFunctionReturn(0); 1741d4002b98SHong Zhang } 1742d4002b98SHong Zhang 1743d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 1744d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL, 17456108893eSStefano Zampini MatGetRow_SeqSELL, 17466108893eSStefano Zampini MatRestoreRow_SeqSELL, 1747d4002b98SHong Zhang MatMult_SeqSELL, 1748d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL, 1749d4002b98SHong Zhang MatMultTranspose_SeqSELL, 1750d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL, 1751f4259b30SLisandro Dalcin NULL, 1752f4259b30SLisandro Dalcin NULL, 1753f4259b30SLisandro Dalcin NULL, 1754f4259b30SLisandro Dalcin /* 10*/ NULL, 1755f4259b30SLisandro Dalcin NULL, 1756f4259b30SLisandro Dalcin NULL, 1757d4002b98SHong Zhang MatSOR_SeqSELL, 1758f4259b30SLisandro Dalcin NULL, 1759d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL, 1760d4002b98SHong Zhang MatEqual_SeqSELL, 1761d4002b98SHong Zhang MatGetDiagonal_SeqSELL, 1762d4002b98SHong Zhang MatDiagonalScale_SeqSELL, 1763f4259b30SLisandro Dalcin NULL, 1764f4259b30SLisandro Dalcin /* 20*/ NULL, 1765d4002b98SHong Zhang MatAssemblyEnd_SeqSELL, 1766d4002b98SHong Zhang MatSetOption_SeqSELL, 1767d4002b98SHong Zhang MatZeroEntries_SeqSELL, 1768f4259b30SLisandro Dalcin /* 24*/ NULL, 1769f4259b30SLisandro Dalcin NULL, 1770f4259b30SLisandro Dalcin NULL, 1771f4259b30SLisandro Dalcin NULL, 1772f4259b30SLisandro Dalcin NULL, 1773d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL, 1774f4259b30SLisandro Dalcin NULL, 1775f4259b30SLisandro Dalcin NULL, 1776f4259b30SLisandro Dalcin NULL, 1777f4259b30SLisandro Dalcin NULL, 1778d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL, 1779f4259b30SLisandro Dalcin NULL, 1780f4259b30SLisandro Dalcin NULL, 1781f4259b30SLisandro Dalcin NULL, 1782f4259b30SLisandro Dalcin NULL, 1783f4259b30SLisandro Dalcin /* 39*/ NULL, 1784f4259b30SLisandro Dalcin NULL, 1785f4259b30SLisandro Dalcin NULL, 1786d4002b98SHong Zhang MatGetValues_SeqSELL, 1787d4002b98SHong Zhang MatCopy_SeqSELL, 1788f4259b30SLisandro Dalcin /* 44*/ NULL, 1789d4002b98SHong Zhang MatScale_SeqSELL, 1790d4002b98SHong Zhang MatShift_SeqSELL, 1791f4259b30SLisandro Dalcin NULL, 1792f4259b30SLisandro Dalcin NULL, 1793f4259b30SLisandro Dalcin /* 49*/ NULL, 1794f4259b30SLisandro Dalcin NULL, 1795f4259b30SLisandro Dalcin NULL, 1796f4259b30SLisandro Dalcin NULL, 1797f4259b30SLisandro Dalcin NULL, 1798d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 1799f4259b30SLisandro Dalcin NULL, 1800f4259b30SLisandro Dalcin NULL, 1801f4259b30SLisandro Dalcin NULL, 1802f4259b30SLisandro Dalcin NULL, 1803f4259b30SLisandro Dalcin /* 59*/ NULL, 1804d4002b98SHong Zhang MatDestroy_SeqSELL, 1805d4002b98SHong Zhang MatView_SeqSELL, 1806f4259b30SLisandro Dalcin NULL, 1807f4259b30SLisandro Dalcin NULL, 1808f4259b30SLisandro Dalcin /* 64*/ NULL, 1809f4259b30SLisandro Dalcin NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin /* 69*/ NULL, 1814f4259b30SLisandro Dalcin NULL, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin /* 74*/ NULL, 1819d4002b98SHong Zhang MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */ 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin NULL, 1823f4259b30SLisandro Dalcin /* 79*/ NULL, 1824f4259b30SLisandro Dalcin NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin /* 84*/ NULL, 1829f4259b30SLisandro Dalcin NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin /* 89*/ NULL, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin /* 94*/ NULL, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin /* 99*/ NULL, 1844f4259b30SLisandro Dalcin NULL, 1845f4259b30SLisandro Dalcin NULL, 1846d4002b98SHong Zhang MatConjugate_SeqSELL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin /*104*/ NULL, 1849f4259b30SLisandro Dalcin NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin /*109*/ NULL, 1854f4259b30SLisandro Dalcin NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857d4002b98SHong Zhang MatMissingDiagonal_SeqSELL, 1858f4259b30SLisandro Dalcin /*114*/ NULL, 1859f4259b30SLisandro Dalcin NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin /*119*/ NULL, 1864f4259b30SLisandro Dalcin NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin /*124*/ NULL, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin /*129*/ NULL, 1874f4259b30SLisandro Dalcin NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin /*134*/ NULL, 1879f4259b30SLisandro Dalcin NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin /*139*/ NULL, 1884f4259b30SLisandro Dalcin NULL, 1885f4259b30SLisandro Dalcin NULL, 1886d4002b98SHong Zhang MatFDColoringSetUp_SeqXAIJ, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin /*144*/ NULL 1889d4002b98SHong Zhang }; 1890d4002b98SHong Zhang 1891d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat) 1892d4002b98SHong Zhang { 1893d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1894d4002b98SHong Zhang PetscErrorCode ierr; 1895d4002b98SHong Zhang 1896d4002b98SHong Zhang PetscFunctionBegin; 1897d4002b98SHong Zhang if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1898d4002b98SHong Zhang 1899d4002b98SHong Zhang /* allocate space for values if not already there */ 1900d4002b98SHong Zhang if (!a->saved_values) { 1901d4002b98SHong Zhang ierr = PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values);CHKERRQ(ierr); 1902d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar));CHKERRQ(ierr); 1903d4002b98SHong Zhang } 1904d4002b98SHong Zhang 1905d4002b98SHong Zhang /* copy values over */ 1906580bdb30SBarry Smith ierr = PetscArraycpy(a->saved_values,a->val,a->sliidx[a->totalslices]);CHKERRQ(ierr); 1907d4002b98SHong Zhang PetscFunctionReturn(0); 1908d4002b98SHong Zhang } 1909d4002b98SHong Zhang 1910d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat) 1911d4002b98SHong Zhang { 1912d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1913d4002b98SHong Zhang PetscErrorCode ierr; 1914d4002b98SHong Zhang 1915d4002b98SHong Zhang PetscFunctionBegin; 1916d4002b98SHong Zhang if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1917d4002b98SHong Zhang if (!a->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 1918580bdb30SBarry Smith ierr = PetscArraycpy(a->val,a->saved_values,a->sliidx[a->totalslices]);CHKERRQ(ierr); 1919d4002b98SHong Zhang PetscFunctionReturn(0); 1920d4002b98SHong Zhang } 1921d4002b98SHong Zhang 1922d4002b98SHong Zhang /*@C 1923d4002b98SHong Zhang MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray() 1924d4002b98SHong Zhang 1925d4002b98SHong Zhang Not Collective 1926d4002b98SHong Zhang 1927d4002b98SHong Zhang Input Parameters: 1928d4002b98SHong Zhang . mat - a MATSEQSELL matrix 1929d4002b98SHong Zhang . array - pointer to the data 1930d4002b98SHong Zhang 1931d4002b98SHong Zhang Level: intermediate 1932d4002b98SHong Zhang 1933d4002b98SHong Zhang .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90() 1934d4002b98SHong Zhang @*/ 1935d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array) 1936d4002b98SHong Zhang { 1937d4002b98SHong Zhang PetscErrorCode ierr; 1938d4002b98SHong Zhang 1939d4002b98SHong Zhang PetscFunctionBegin; 1940d4002b98SHong Zhang ierr = PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 1941d4002b98SHong Zhang PetscFunctionReturn(0); 1942d4002b98SHong Zhang } 1943d4002b98SHong Zhang 1944d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B) 1945d4002b98SHong Zhang { 1946d4002b98SHong Zhang Mat_SeqSELL *b; 1947d4002b98SHong Zhang PetscMPIInt size; 1948d4002b98SHong Zhang PetscErrorCode ierr; 1949d4002b98SHong Zhang 1950d4002b98SHong Zhang PetscFunctionBegin; 1951ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr); 1952d4002b98SHong Zhang if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1"); 1953d4002b98SHong Zhang 1954d4002b98SHong Zhang ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1955d4002b98SHong Zhang 1956d4002b98SHong Zhang B->data = (void*)b; 1957d4002b98SHong Zhang 1958d4002b98SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1959d4002b98SHong Zhang 1960f4259b30SLisandro Dalcin b->row = NULL; 1961f4259b30SLisandro Dalcin b->col = NULL; 1962f4259b30SLisandro Dalcin b->icol = NULL; 1963d4002b98SHong Zhang b->reallocs = 0; 1964d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE; 1965d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1966d4002b98SHong Zhang b->nonew = 0; 1967f4259b30SLisandro Dalcin b->diag = NULL; 1968f4259b30SLisandro Dalcin b->solve_work = NULL; 1969f4259b30SLisandro Dalcin B->spptr = NULL; 1970f4259b30SLisandro Dalcin b->saved_values = NULL; 1971f4259b30SLisandro Dalcin b->idiag = NULL; 1972f4259b30SLisandro Dalcin b->mdiag = NULL; 1973f4259b30SLisandro Dalcin b->ssor_work = NULL; 1974d4002b98SHong Zhang b->omega = 1.0; 1975d4002b98SHong Zhang b->fshift = 0.0; 1976d4002b98SHong Zhang b->idiagvalid = PETSC_FALSE; 1977d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE; 1978d4002b98SHong Zhang 1979d4002b98SHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL);CHKERRQ(ierr); 1980d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL);CHKERRQ(ierr); 1981d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL);CHKERRQ(ierr); 1982d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL);CHKERRQ(ierr); 1983d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL);CHKERRQ(ierr); 1984d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL);CHKERRQ(ierr); 1985d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ);CHKERRQ(ierr); 1986d4002b98SHong Zhang PetscFunctionReturn(0); 1987d4002b98SHong Zhang } 1988d4002b98SHong Zhang 1989d4002b98SHong Zhang /* 1990d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B 1991d4002b98SHong Zhang */ 1992d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace) 1993d4002b98SHong Zhang { 1994d4002b98SHong Zhang Mat_SeqSELL *c,*a=(Mat_SeqSELL*)A->data; 1995d4002b98SHong Zhang PetscInt i,m=A->rmap->n; 1996d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 1997d4002b98SHong Zhang PetscErrorCode ierr; 1998d4002b98SHong Zhang 1999d4002b98SHong Zhang PetscFunctionBegin; 2000d4002b98SHong Zhang c = (Mat_SeqSELL*)C->data; 2001d4002b98SHong Zhang 2002d4002b98SHong Zhang C->factortype = A->factortype; 2003f4259b30SLisandro Dalcin c->row = NULL; 2004f4259b30SLisandro Dalcin c->col = NULL; 2005f4259b30SLisandro Dalcin c->icol = NULL; 2006d4002b98SHong Zhang c->reallocs = 0; 2007d4002b98SHong Zhang 2008d4002b98SHong Zhang C->assembled = PETSC_TRUE; 2009d4002b98SHong Zhang 2010d4002b98SHong Zhang ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr); 2011d4002b98SHong Zhang ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr); 2012d4002b98SHong Zhang 2013d4002b98SHong Zhang ierr = PetscMalloc1(8*totalslices,&c->rlen);CHKERRQ(ierr); 2014d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 2015d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&c->sliidx);CHKERRQ(ierr); 2016d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 2017d4002b98SHong Zhang 2018d4002b98SHong Zhang for (i=0; i<m; i++) c->rlen[i] = a->rlen[i]; 2019d4002b98SHong Zhang for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i]; 2020d4002b98SHong Zhang 2021d4002b98SHong Zhang /* allocate the matrix space */ 2022d4002b98SHong Zhang if (mallocmatspace) { 2023d4002b98SHong Zhang ierr = PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx);CHKERRQ(ierr); 2024d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 2025d4002b98SHong Zhang 2026d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE; 2027d4002b98SHong Zhang 2028d4002b98SHong Zhang if (m > 0) { 2029580bdb30SBarry Smith ierr = PetscArraycpy(c->colidx,a->colidx,a->maxallocmat);CHKERRQ(ierr); 2030d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) { 2031580bdb30SBarry Smith ierr = PetscArraycpy(c->val,a->val,a->maxallocmat);CHKERRQ(ierr); 2032d4002b98SHong Zhang } else { 2033580bdb30SBarry Smith ierr = PetscArrayzero(c->val,a->maxallocmat);CHKERRQ(ierr); 2034d4002b98SHong Zhang } 2035d4002b98SHong Zhang } 2036d4002b98SHong Zhang } 2037d4002b98SHong Zhang 2038d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries; 2039d4002b98SHong Zhang c->roworiented = a->roworiented; 2040d4002b98SHong Zhang c->nonew = a->nonew; 2041d4002b98SHong Zhang if (a->diag) { 2042d4002b98SHong Zhang ierr = PetscMalloc1(m,&c->diag);CHKERRQ(ierr); 2043d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 2044d4002b98SHong Zhang for (i=0; i<m; i++) { 2045d4002b98SHong Zhang c->diag[i] = a->diag[i]; 2046d4002b98SHong Zhang } 2047f4259b30SLisandro Dalcin } else c->diag = NULL; 2048d4002b98SHong Zhang 2049f4259b30SLisandro Dalcin c->solve_work = NULL; 2050f4259b30SLisandro Dalcin c->saved_values = NULL; 2051f4259b30SLisandro Dalcin c->idiag = NULL; 2052f4259b30SLisandro Dalcin c->ssor_work = NULL; 2053d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern; 2054d4002b98SHong Zhang c->free_val = PETSC_TRUE; 2055d4002b98SHong Zhang c->free_colidx = PETSC_TRUE; 2056d4002b98SHong Zhang 2057d4002b98SHong Zhang c->maxallocmat = a->maxallocmat; 2058d4002b98SHong Zhang c->maxallocrow = a->maxallocrow; 2059d4002b98SHong Zhang c->rlenmax = a->rlenmax; 2060d4002b98SHong Zhang c->nz = a->nz; 2061d4002b98SHong Zhang C->preallocated = PETSC_TRUE; 2062d4002b98SHong Zhang 2063d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt; 2064d4002b98SHong Zhang C->nonzerostate = A->nonzerostate; 2065d4002b98SHong Zhang 2066d4002b98SHong Zhang ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 2067d4002b98SHong Zhang PetscFunctionReturn(0); 2068d4002b98SHong Zhang } 2069d4002b98SHong Zhang 2070d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B) 2071d4002b98SHong Zhang { 2072d4002b98SHong Zhang PetscErrorCode ierr; 2073d4002b98SHong Zhang 2074d4002b98SHong Zhang PetscFunctionBegin; 2075d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr); 2076d4002b98SHong Zhang ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 2077d4002b98SHong Zhang if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) { 2078d4002b98SHong Zhang ierr = MatSetBlockSizesFromMats(*B,A,A);CHKERRQ(ierr); 2079d4002b98SHong Zhang } 2080d4002b98SHong Zhang ierr = MatSetType(*B,((PetscObject)A)->type_name);CHKERRQ(ierr); 2081d4002b98SHong Zhang ierr = MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr); 2082d4002b98SHong Zhang PetscFunctionReturn(0); 2083d4002b98SHong Zhang } 2084d4002b98SHong Zhang 2085d4002b98SHong Zhang /*@C 2086d4002b98SHong Zhang MatCreateSeqSELL - Creates a sparse matrix in SELL format. 2087d4002b98SHong Zhang 2088d083f849SBarry Smith Collective 2089d4002b98SHong Zhang 2090d4002b98SHong Zhang Input Parameters: 2091d4002b98SHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 2092d4002b98SHong Zhang . m - number of rows 2093d4002b98SHong Zhang . n - number of columns 2094d4002b98SHong Zhang . rlenmax - maximum number of nonzeros in a row 2095d4002b98SHong Zhang - rlen - array containing the number of nonzeros in the various rows 2096d4002b98SHong Zhang (possibly different for each row) or NULL 2097d4002b98SHong Zhang 2098d4002b98SHong Zhang Output Parameter: 2099d4002b98SHong Zhang . A - the matrix 2100d4002b98SHong Zhang 2101d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2102f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2103d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 2104d4002b98SHong Zhang 2105d4002b98SHong Zhang Notes: 2106d4002b98SHong Zhang If nnz is given then nz is ignored 2107d4002b98SHong Zhang 2108d4002b98SHong Zhang Specify the preallocated storage with either rlenmax or rlen (not both). 2109d4002b98SHong Zhang Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory 2110d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 2111d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 2112d4002b98SHong Zhang 2113d4002b98SHong Zhang Level: intermediate 2114d4002b98SHong Zhang 21153eec2f6aSPierre Jolivet .seealso: MatCreate(), MatCreateSELL(), MatSetValues() 2116d4002b98SHong Zhang 2117d4002b98SHong Zhang @*/ 2118d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A) 2119d4002b98SHong Zhang { 2120d4002b98SHong Zhang PetscErrorCode ierr; 2121d4002b98SHong Zhang 2122d4002b98SHong Zhang PetscFunctionBegin; 2123d4002b98SHong Zhang ierr = MatCreate(comm,A);CHKERRQ(ierr); 2124d4002b98SHong Zhang ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 2125d4002b98SHong Zhang ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr); 2126d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen);CHKERRQ(ierr); 2127d4002b98SHong Zhang PetscFunctionReturn(0); 2128d4002b98SHong Zhang } 2129d4002b98SHong Zhang 2130d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg) 2131d4002b98SHong Zhang { 2132d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data; 2133d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 2134d4002b98SHong Zhang PetscErrorCode ierr; 2135d4002b98SHong Zhang 2136d4002b98SHong Zhang PetscFunctionBegin; 2137d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */ 2138d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) { 2139d4002b98SHong Zhang *flg = PETSC_FALSE; 2140d4002b98SHong Zhang PetscFunctionReturn(0); 2141d4002b98SHong Zhang } 2142d4002b98SHong Zhang /* if the a->colidx are the same */ 2143580bdb30SBarry Smith ierr = PetscArraycmp(a->colidx,b->colidx,a->sliidx[totalslices],flg);CHKERRQ(ierr); 2144d4002b98SHong Zhang if (!*flg) PetscFunctionReturn(0); 2145d4002b98SHong Zhang /* if a->val are the same */ 2146580bdb30SBarry Smith ierr = PetscArraycmp(a->val,b->val,a->sliidx[totalslices],flg);CHKERRQ(ierr); 2147d4002b98SHong Zhang PetscFunctionReturn(0); 2148d4002b98SHong Zhang } 2149d4002b98SHong Zhang 2150d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A) 2151d4002b98SHong Zhang { 2152d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2153d4002b98SHong Zhang 2154d4002b98SHong Zhang PetscFunctionBegin; 2155d4002b98SHong Zhang a->idiagvalid = PETSC_FALSE; 2156d4002b98SHong Zhang PetscFunctionReturn(0); 2157d4002b98SHong Zhang } 2158d4002b98SHong Zhang 2159d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A) 2160d4002b98SHong Zhang { 2161d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 2162d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2163d4002b98SHong Zhang PetscInt i; 2164d4002b98SHong Zhang PetscScalar *val = a->val; 2165d4002b98SHong Zhang 2166d4002b98SHong Zhang PetscFunctionBegin; 2167d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 2168d4002b98SHong Zhang val[i] = PetscConj(val[i]); 2169d4002b98SHong Zhang } 2170d4002b98SHong Zhang #else 2171d4002b98SHong Zhang PetscFunctionBegin; 2172d4002b98SHong Zhang #endif 2173d4002b98SHong Zhang PetscFunctionReturn(0); 2174d4002b98SHong Zhang } 2175