1d4002b98SHong Zhang 2d4002b98SHong Zhang /* 3d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format. 4d4002b98SHong Zhang */ 5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/ 6d4002b98SHong Zhang #include <petscblaslapack.h> 7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h> 8ed73aabaSBarry Smith 9ed73aabaSBarry Smith static PetscBool cited = PETSC_FALSE; 109371c9d4SSatish Balay static const char citation[] = "@inproceedings{ZhangELLPACK2018,\n" 11ed73aabaSBarry Smith " author = {Hong Zhang and Richard T. Mills and Karl Rupp and Barry F. Smith},\n" 12ed73aabaSBarry Smith " title = {Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}},\n" 13ed73aabaSBarry Smith " booktitle = {Proceedings of the 47th International Conference on Parallel Processing},\n" 14ed73aabaSBarry Smith " year = 2018\n" 15ed73aabaSBarry Smith "}\n"; 16ed73aabaSBarry Smith 175f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 184243e2ceSHong Zhang 19d4002b98SHong Zhang #include <immintrin.h> 20d4002b98SHong Zhang 21d4002b98SHong Zhang #if !defined(_MM_SCALE_8) 22d4002b98SHong Zhang #define _MM_SCALE_8 8 23d4002b98SHong Zhang #endif 24d4002b98SHong Zhang 25d4002b98SHong Zhang #if defined(__AVX512F__) 26d4002b98SHong Zhang /* these do not work 27d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx); 28d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval); 29d4002b98SHong Zhang */ 30d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \ 31d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \ 32ef588d5cSRichard Tran Mills vec_idx = _mm256_loadu_si256((__m256i const *)acolidx); \ 33ef588d5cSRichard Tran Mills vec_vals = _mm512_loadu_pd(aval); \ 34d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx, x, _MM_SCALE_8); \ 35a48a6482SHong Zhang vec_y = _mm512_fmadd_pd(vec_x, vec_vals, vec_y) 365f70456aSHong Zhang #elif defined(__AVX2__) && defined(__FMA__) 37a48a6482SHong Zhang #define AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \ 38ef588d5cSRichard Tran Mills vec_vals = _mm256_loadu_pd(aval); \ 39ef588d5cSRichard Tran Mills vec_idx = _mm_loadu_si128((__m128i const *)acolidx); /* SSE2 */ \ 40a48a6482SHong Zhang vec_x = _mm256_i32gather_pd(x, vec_idx, _MM_SCALE_8); \ 41a48a6482SHong Zhang vec_y = _mm256_fmadd_pd(vec_x, vec_vals, vec_y) 42d4002b98SHong Zhang #endif 43d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */ 44d4002b98SHong Zhang 45d4002b98SHong Zhang /*@C 46d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance 47d4002b98SHong Zhang the user should preallocate the matrix storage by setting the parameter nz 48d4002b98SHong Zhang (or the array nnz). By setting these parameters accurately, performance 49d4002b98SHong Zhang during matrix assembly can be increased significantly. 50d4002b98SHong Zhang 51d083f849SBarry Smith Collective 52d4002b98SHong Zhang 53d4002b98SHong Zhang Input Parameters: 5411a5261eSBarry Smith + B - The `MATSEQSELL` matrix 55d4002b98SHong Zhang . nz - number of nonzeros per row (same for all rows) 56d4002b98SHong Zhang - nnz - array containing the number of nonzeros in the various rows 57d4002b98SHong Zhang (possibly different for each row) or NULL 58d4002b98SHong Zhang 59d4002b98SHong Zhang Notes: 60d4002b98SHong Zhang If nnz is given then nz is ignored. 61d4002b98SHong Zhang 62d4002b98SHong Zhang Specify the preallocated storage with either nz or nnz (not both). 6311a5261eSBarry Smith Set nz = `PETSC_DEFAULT` and nnz = NULL for PETSc to control dynamic memory 64d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 65d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 66d4002b98SHong Zhang 6711a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 68d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 69d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 70d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 71d4002b98SHong Zhang 7211a5261eSBarry Smith Developers: Use nz of `MAT_SKIP_ALLOCATION` to not allocate any space for the matrix 73d4002b98SHong Zhang entries or columns indices. 74d4002b98SHong Zhang 75c7ee91abSRichard Tran Mills The maximum number of nonzeos in any row should be as accurate as possible. 76c7ee91abSRichard Tran Mills If it is underestimated, you will get bad performance due to reallocation 77d4002b98SHong Zhang (MatSeqXSELLReallocateSELL). 78d4002b98SHong Zhang 79d4002b98SHong Zhang Level: intermediate 80d4002b98SHong Zhang 8111a5261eSBarry Smith .seealso: `MATSEQSELL`, `MATSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatGetInfo()` 82d4002b98SHong Zhang @*/ 83d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation(Mat B, PetscInt rlenmax, const PetscInt rlen[]) 84d71ae5a4SJacob Faibussowitsch { 85d4002b98SHong Zhang PetscFunctionBegin; 86d4002b98SHong Zhang PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 87d4002b98SHong Zhang PetscValidType(B, 1); 88cac4c232SBarry Smith PetscTryMethod(B, "MatSeqSELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[]), (B, rlenmax, rlen)); 89d4002b98SHong Zhang PetscFunctionReturn(0); 90d4002b98SHong Zhang } 91d4002b98SHong Zhang 92d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B, PetscInt maxallocrow, const PetscInt rlen[]) 93d71ae5a4SJacob Faibussowitsch { 94d4002b98SHong Zhang Mat_SeqSELL *b; 95d4002b98SHong Zhang PetscInt i, j, totalslices; 96d4002b98SHong Zhang PetscBool skipallocation = PETSC_FALSE, realalloc = PETSC_FALSE; 97d4002b98SHong Zhang 98d4002b98SHong Zhang PetscFunctionBegin; 99d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE; 100d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) { 101d4002b98SHong Zhang skipallocation = PETSC_TRUE; 102d4002b98SHong Zhang maxallocrow = 0; 103d4002b98SHong Zhang } 104d4002b98SHong Zhang 1059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1069566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 107d4002b98SHong Zhang 108d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */ 109d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5; 11008401ef6SPierre Jolivet PetscCheck(maxallocrow >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "maxallocrow cannot be less than 0: value %" PetscInt_FMT, maxallocrow); 111d4002b98SHong Zhang if (rlen) { 112d4002b98SHong Zhang for (i = 0; i < B->rmap->n; i++) { 11308401ef6SPierre Jolivet PetscCheck(rlen[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, rlen[i]); 11408401ef6SPierre Jolivet PetscCheck(rlen[i] <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT, i, rlen[i], B->cmap->n); 115d4002b98SHong Zhang } 116d4002b98SHong Zhang } 117d4002b98SHong Zhang 118d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 119d4002b98SHong Zhang 120d4002b98SHong Zhang b = (Mat_SeqSELL *)B->data; 121d4002b98SHong Zhang 122faa75363SBarry Smith totalslices = PetscCeilInt(B->rmap->n, 8); 123d4002b98SHong Zhang b->totalslices = totalslices; 124d4002b98SHong Zhang if (!skipallocation) { 1259566063dSJacob Faibussowitsch if (B->rmap->n & 0x07) PetscCall(PetscInfo(B, "Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %" PetscInt_FMT ")\n", B->rmap->n)); 126d4002b98SHong Zhang 127d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */ 1289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totalslices + 1, &b->sliidx)); 129d4002b98SHong Zhang } 130d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */ 131d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10; 132d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1; 133d4002b98SHong Zhang for (i = 0; i <= totalslices; i++) b->sliidx[i] = i * 8 * maxallocrow; 134d4002b98SHong Zhang } else { 135d4002b98SHong Zhang maxallocrow = 0; 136d4002b98SHong Zhang b->sliidx[0] = 0; 137d4002b98SHong Zhang for (i = 1; i < totalslices; i++) { 138d4002b98SHong Zhang b->sliidx[i] = 0; 139ad540459SPierre Jolivet for (j = 0; j < 8; j++) b->sliidx[i] = PetscMax(b->sliidx[i], rlen[8 * (i - 1) + j]); 140d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i], maxallocrow); 1419566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(b->sliidx[i - 1], 8 * b->sliidx[i], &b->sliidx[i])); 142d4002b98SHong Zhang } 143d4002b98SHong Zhang /* last slice */ 144d4002b98SHong Zhang b->sliidx[totalslices] = 0; 145d4002b98SHong Zhang for (j = (totalslices - 1) * 8; j < B->rmap->n; j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices], rlen[j]); 146d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices], maxallocrow); 147d4002b98SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices - 1] + 8 * b->sliidx[totalslices]; 148d4002b98SHong Zhang } 149d4002b98SHong Zhang 150d4002b98SHong Zhang /* allocate space for val, colidx, rlen */ 151d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */ 1529566063dSJacob Faibussowitsch PetscCall(MatSeqXSELLFreeSELL(B, &b->val, &b->colidx)); 153d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */ 1549566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(b->sliidx[totalslices], &b->val, b->sliidx[totalslices], &b->colidx)); 155d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */ 1569566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(8 * totalslices, &b->rlen)); 157d4002b98SHong Zhang 158d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE; 159d4002b98SHong Zhang b->free_val = PETSC_TRUE; 160d4002b98SHong Zhang b->free_colidx = PETSC_TRUE; 161d4002b98SHong Zhang } else { 162d4002b98SHong Zhang b->free_val = PETSC_FALSE; 163d4002b98SHong Zhang b->free_colidx = PETSC_FALSE; 164d4002b98SHong Zhang } 165d4002b98SHong Zhang 166d4002b98SHong Zhang b->nz = 0; 167d4002b98SHong Zhang b->maxallocrow = maxallocrow; 168d4002b98SHong Zhang b->rlenmax = maxallocrow; 169d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices]; 170d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat; 1711baa6e33SBarry Smith if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 172d4002b98SHong Zhang PetscFunctionReturn(0); 173d4002b98SHong Zhang } 174d4002b98SHong Zhang 175d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 176d71ae5a4SJacob Faibussowitsch { 1776108893eSStefano Zampini Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1786108893eSStefano Zampini PetscInt shift; 1796108893eSStefano Zampini 1806108893eSStefano Zampini PetscFunctionBegin; 181aed4548fSBarry Smith PetscCheck(row >= 0 && row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range", row); 1826108893eSStefano Zampini if (nz) *nz = a->rlen[row]; 1836108893eSStefano Zampini shift = a->sliidx[row >> 3] + (row & 0x07); 18448a46eb9SPierre Jolivet if (!a->getrowcols) PetscCall(PetscMalloc2(a->rlenmax, &a->getrowcols, a->rlenmax, &a->getrowvals)); 1856108893eSStefano Zampini if (idx) { 1866108893eSStefano Zampini PetscInt j; 1876108893eSStefano Zampini for (j = 0; j < a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift + 8 * j]; 1886108893eSStefano Zampini *idx = a->getrowcols; 1896108893eSStefano Zampini } 1906108893eSStefano Zampini if (v) { 1916108893eSStefano Zampini PetscInt j; 1926108893eSStefano Zampini for (j = 0; j < a->rlen[row]; j++) a->getrowvals[j] = a->val[shift + 8 * j]; 1936108893eSStefano Zampini *v = a->getrowvals; 1946108893eSStefano Zampini } 1956108893eSStefano Zampini PetscFunctionReturn(0); 1966108893eSStefano Zampini } 1976108893eSStefano Zampini 198d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 199d71ae5a4SJacob Faibussowitsch { 2006108893eSStefano Zampini PetscFunctionBegin; 2016108893eSStefano Zampini PetscFunctionReturn(0); 2026108893eSStefano Zampini } 2036108893eSStefano Zampini 204d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 205d71ae5a4SJacob Faibussowitsch { 206d4002b98SHong Zhang Mat B; 207d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 208e3f1f374SStefano Zampini PetscInt i; 209d4002b98SHong Zhang 210d4002b98SHong Zhang PetscFunctionBegin; 211ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 212ad013a7bSRichard Tran Mills B = *newmat; 2139566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 214ad013a7bSRichard Tran Mills } else { 2159566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 2169566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 2179566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, a->rlen)); 219ad013a7bSRichard Tran Mills } 220d4002b98SHong Zhang 221e3f1f374SStefano Zampini for (i = 0; i < A->rmap->n; i++) { 222e108cb99SStefano Zampini PetscInt nz = 0, *cols = NULL; 223e108cb99SStefano Zampini PetscScalar *vals = NULL; 224e3f1f374SStefano Zampini 2259566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSELL(A, i, &nz, &cols, &vals)); 2269566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &i, nz, cols, vals, INSERT_VALUES)); 2279566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSELL(A, i, &nz, &cols, &vals)); 228d4002b98SHong Zhang } 229e3f1f374SStefano Zampini 2309566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 2319566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 232d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 233d4002b98SHong Zhang 234d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2359566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 236d4002b98SHong Zhang } else { 237d4002b98SHong Zhang *newmat = B; 238d4002b98SHong Zhang } 239d4002b98SHong Zhang PetscFunctionReturn(0); 240d4002b98SHong Zhang } 241d4002b98SHong Zhang 242d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h> 243d4002b98SHong Zhang 244d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 245d71ae5a4SJacob Faibussowitsch { 246d4002b98SHong Zhang Mat B; 247d4002b98SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 248d4002b98SHong Zhang PetscInt *ai = a->i, m = A->rmap->N, n = A->cmap->N, i, *rowlengths, row, ncols; 249d4002b98SHong Zhang const PetscInt *cols; 250d4002b98SHong Zhang const PetscScalar *vals; 251d4002b98SHong Zhang 252d4002b98SHong Zhang PetscFunctionBegin; 253ad013a7bSRichard Tran Mills 254ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 255ad013a7bSRichard Tran Mills B = *newmat; 256ad013a7bSRichard Tran Mills } else { 257d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) || !a->ilen) { 2589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlengths)); 259ad540459SPierre Jolivet for (i = 0; i < m; i++) rowlengths[i] = ai[i + 1] - ai[i]; 260d5e5b2e5SBarry Smith } 261d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) && a->ilen) { 262d5e5b2e5SBarry Smith PetscBool eq; 2639566063dSJacob Faibussowitsch PetscCall(PetscMemcmp(rowlengths, a->ilen, m * sizeof(PetscInt), &eq)); 26428b400f6SJacob Faibussowitsch PetscCheck(eq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "SeqAIJ ilen array incorrect"); 2659566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlengths)); 266d5e5b2e5SBarry Smith rowlengths = a->ilen; 267d5e5b2e5SBarry Smith } else if (a->ilen) rowlengths = a->ilen; 2689566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 2699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, n, m, n)); 2709566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQSELL)); 2719566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(B, 0, rowlengths)); 2729566063dSJacob Faibussowitsch if (rowlengths != a->ilen) PetscCall(PetscFree(rowlengths)); 273ad013a7bSRichard Tran Mills } 274d4002b98SHong Zhang 275d4002b98SHong Zhang for (row = 0; row < m; row++) { 2769566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals)); 2779566063dSJacob Faibussowitsch PetscCall(MatSetValues_SeqSELL(B, 1, &row, ncols, cols, vals, INSERT_VALUES)); 2789566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals)); 279d4002b98SHong Zhang } 2809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 2819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 282d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 283d4002b98SHong Zhang 284d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2859566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 286d4002b98SHong Zhang } else { 287d4002b98SHong Zhang *newmat = B; 288d4002b98SHong Zhang } 289d4002b98SHong Zhang PetscFunctionReturn(0); 290d4002b98SHong Zhang } 291d4002b98SHong Zhang 292d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_SeqSELL(Mat A, Vec xx, Vec yy) 293d71ae5a4SJacob Faibussowitsch { 294d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 295d4002b98SHong Zhang PetscScalar *y; 296d4002b98SHong Zhang const PetscScalar *x; 297d4002b98SHong Zhang const MatScalar *aval = a->val; 298d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 299d4002b98SHong Zhang const PetscInt *acolidx = a->colidx; 3007285fed1SHong Zhang PetscInt i, j; 301d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 302d4002b98SHong Zhang __m512d vec_x, vec_y, vec_vals; 303d4002b98SHong Zhang __m256i vec_idx; 304d4002b98SHong Zhang __mmask8 mask; 305d4002b98SHong Zhang __m512d vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4; 306d4002b98SHong Zhang __m256i vec_idx2, vec_idx3, vec_idx4; 3075f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 308a48a6482SHong Zhang __m128i vec_idx; 309a48a6482SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals; 310a48a6482SHong Zhang MatScalar yval; 311a48a6482SHong Zhang PetscInt r, rows_left, row, nnz_in_row; 31221cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 313d4002b98SHong Zhang __m128d vec_x_tmp; 314d4002b98SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals; 315d4002b98SHong Zhang MatScalar yval; 316d4002b98SHong Zhang PetscInt r, rows_left, row, nnz_in_row; 317d4002b98SHong Zhang #else 318d4002b98SHong Zhang PetscScalar sum[8]; 319d4002b98SHong Zhang #endif 320d4002b98SHong Zhang 321d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 322d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval) 323d4002b98SHong Zhang #endif 324d4002b98SHong Zhang 325d4002b98SHong Zhang PetscFunctionBegin; 3269566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 3279566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y)); 328d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 329d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 330d4002b98SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 331d4002b98SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 332d4002b98SHong Zhang 333d4002b98SHong Zhang vec_y = _mm512_setzero_pd(); 334d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd(); 335d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd(); 336d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd(); 337d4002b98SHong Zhang 33838efe8efSHong Zhang j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 339d4002b98SHong Zhang switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) { 340d4002b98SHong Zhang case 3: 341d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 3429371c9d4SSatish Balay acolidx += 8; 3439371c9d4SSatish Balay aval += 8; 344d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 3459371c9d4SSatish Balay acolidx += 8; 3469371c9d4SSatish Balay aval += 8; 347d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 3489371c9d4SSatish Balay acolidx += 8; 3499371c9d4SSatish Balay aval += 8; 350d4002b98SHong Zhang j += 3; 351d4002b98SHong Zhang break; 352d4002b98SHong Zhang case 2: 353d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 3549371c9d4SSatish Balay acolidx += 8; 3559371c9d4SSatish Balay aval += 8; 356d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 3579371c9d4SSatish Balay acolidx += 8; 3589371c9d4SSatish Balay aval += 8; 359d4002b98SHong Zhang j += 2; 360d4002b98SHong Zhang break; 361d4002b98SHong Zhang case 1: 362d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 3639371c9d4SSatish Balay acolidx += 8; 3649371c9d4SSatish Balay aval += 8; 365d4002b98SHong Zhang j += 1; 366d4002b98SHong Zhang break; 367d4002b98SHong Zhang } 368d4002b98SHong Zhang #pragma novector 369d4002b98SHong Zhang for (; j < (a->sliidx[i + 1] >> 3); j += 4) { 370d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 3719371c9d4SSatish Balay acolidx += 8; 3729371c9d4SSatish Balay aval += 8; 373d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 3749371c9d4SSatish Balay acolidx += 8; 3759371c9d4SSatish Balay aval += 8; 376d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 3779371c9d4SSatish Balay acolidx += 8; 3789371c9d4SSatish Balay aval += 8; 379d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4); 3809371c9d4SSatish Balay acolidx += 8; 3819371c9d4SSatish Balay aval += 8; 382d4002b98SHong Zhang } 383d4002b98SHong Zhang 384d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y2); 385d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y3); 386d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y4); 387d4002b98SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 388d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07))); 389ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&y[8 * i], mask, vec_y); 390d4002b98SHong Zhang } else { 391ef588d5cSRichard Tran Mills _mm512_storeu_pd(&y[8 * i], vec_y); 392d4002b98SHong Zhang } 393d4002b98SHong Zhang } 3945f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 395a48a6482SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */ 396a48a6482SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 397a48a6482SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 398a48a6482SHong Zhang 399a48a6482SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 400a48a6482SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { 401a48a6482SHong Zhang rows_left = A->rmap->n - 8 * i; 402a48a6482SHong Zhang for (r = 0; r < rows_left; ++r) { 403a48a6482SHong Zhang yval = (MatScalar)0; 404a48a6482SHong Zhang row = 8 * i + r; 405a48a6482SHong Zhang nnz_in_row = a->rlen[row]; 406a48a6482SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]]; 407a48a6482SHong Zhang y[row] = yval; 408a48a6482SHong Zhang } 409a48a6482SHong Zhang break; 410a48a6482SHong Zhang } 411a48a6482SHong Zhang 412a48a6482SHong Zhang vec_y = _mm256_setzero_pd(); 413a48a6482SHong Zhang vec_y2 = _mm256_setzero_pd(); 414a48a6482SHong Zhang 415a48a6482SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 416a48a6482SHong Zhang #pragma novector 417a48a6482SHong Zhang #pragma unroll(2) 418a48a6482SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 419a48a6482SHong Zhang AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 4209371c9d4SSatish Balay aval += 4; 4219371c9d4SSatish Balay acolidx += 4; 422a48a6482SHong Zhang AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y2); 4239371c9d4SSatish Balay aval += 4; 4249371c9d4SSatish Balay acolidx += 4; 425a48a6482SHong Zhang } 426a48a6482SHong Zhang 427ef588d5cSRichard Tran Mills _mm256_storeu_pd(y + i * 8, vec_y); 428ef588d5cSRichard Tran Mills _mm256_storeu_pd(y + i * 8 + 4, vec_y2); 429a48a6482SHong Zhang } 43021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 431d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */ 432d4002b98SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 433d4002b98SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 434d4002b98SHong Zhang 435d4002b98SHong Zhang vec_y = _mm256_setzero_pd(); 436d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd(); 437d4002b98SHong Zhang 438d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 439d4002b98SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { 440d4002b98SHong Zhang rows_left = A->rmap->n - 8 * i; 441d4002b98SHong Zhang for (r = 0; r < rows_left; ++r) { 442d4002b98SHong Zhang yval = (MatScalar)0; 443d4002b98SHong Zhang row = 8 * i + r; 444d4002b98SHong Zhang nnz_in_row = a->rlen[row]; 445d4002b98SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]]; 446d4002b98SHong Zhang y[row] = yval; 447d4002b98SHong Zhang } 448d4002b98SHong Zhang break; 449d4002b98SHong Zhang } 450d4002b98SHong Zhang 451d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 452a48a6482SHong Zhang #pragma novector 453a48a6482SHong Zhang #pragma unroll(2) 4547285fed1SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 455d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 456165f9cc3SJed Brown vec_x_tmp = _mm_setzero_pd(); 457d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 458d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 459d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 460d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 461d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 462d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 463d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y); 464d4002b98SHong Zhang aval += 4; 465d4002b98SHong Zhang 466d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 467d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 468d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 469d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 470d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 471d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 472d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 473d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2); 474d4002b98SHong Zhang aval += 4; 475d4002b98SHong Zhang } 476d4002b98SHong Zhang 477d4002b98SHong Zhang _mm256_storeu_pd(y + i * 8, vec_y); 478d4002b98SHong Zhang _mm256_storeu_pd(y + i * 8 + 4, vec_y2); 479d4002b98SHong Zhang } 480d4002b98SHong Zhang #else 481d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 482d4002b98SHong Zhang for (j = 0; j < 8; j++) sum[j] = 0.0; 483d4002b98SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 484d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 485d4002b98SHong Zhang sum[1] += aval[j + 1] * x[acolidx[j + 1]]; 486d4002b98SHong Zhang sum[2] += aval[j + 2] * x[acolidx[j + 2]]; 487d4002b98SHong Zhang sum[3] += aval[j + 3] * x[acolidx[j + 3]]; 488d4002b98SHong Zhang sum[4] += aval[j + 4] * x[acolidx[j + 4]]; 489d4002b98SHong Zhang sum[5] += aval[j + 5] * x[acolidx[j + 5]]; 490d4002b98SHong Zhang sum[6] += aval[j + 6] * x[acolidx[j + 6]]; 491d4002b98SHong Zhang sum[7] += aval[j + 7] * x[acolidx[j + 7]]; 492d4002b98SHong Zhang } 493d4002b98SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 494d4002b98SHong Zhang for (j = 0; j < (A->rmap->n & 0x07); j++) y[8 * i + j] = sum[j]; 495d4002b98SHong Zhang } else { 4967285fed1SHong Zhang for (j = 0; j < 8; j++) y[8 * i + j] = sum[j]; 497d4002b98SHong Zhang } 498d4002b98SHong Zhang } 499d4002b98SHong Zhang #endif 500d4002b98SHong Zhang 5019566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz - a->nonzerorowcnt)); /* theoretical minimal FLOPs */ 5029566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 5039566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y)); 504d4002b98SHong Zhang PetscFunctionReturn(0); 505d4002b98SHong Zhang } 506d4002b98SHong Zhang 507d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h> 508d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_SeqSELL(Mat A, Vec xx, Vec yy, Vec zz) 509d71ae5a4SJacob Faibussowitsch { 510d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 511d4002b98SHong Zhang PetscScalar *y, *z; 512d4002b98SHong Zhang const PetscScalar *x; 513d4002b98SHong Zhang const MatScalar *aval = a->val; 514d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 515d4002b98SHong Zhang const PetscInt *acolidx = a->colidx; 516d4002b98SHong Zhang PetscInt i, j; 517d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5187285fed1SHong Zhang __m512d vec_x, vec_y, vec_vals; 519d4002b98SHong Zhang __m256i vec_idx; 520d4002b98SHong Zhang __mmask8 mask; 5217285fed1SHong Zhang __m512d vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4; 5227285fed1SHong Zhang __m256i vec_idx2, vec_idx3, vec_idx4; 52321cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5247285fed1SHong Zhang __m128d vec_x_tmp; 5257285fed1SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals; 5267285fed1SHong Zhang MatScalar yval; 5277285fed1SHong Zhang PetscInt r, row, nnz_in_row; 528d4002b98SHong Zhang #else 529d4002b98SHong Zhang PetscScalar sum[8]; 530d4002b98SHong Zhang #endif 531d4002b98SHong Zhang 532d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 533d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval) 534d4002b98SHong Zhang #endif 535d4002b98SHong Zhang 536d4002b98SHong Zhang PetscFunctionBegin; 5379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 5389566063dSJacob Faibussowitsch PetscCall(VecGetArrayPair(yy, zz, &y, &z)); 539d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5407285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 5417285fed1SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 5427285fed1SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 5437285fed1SHong Zhang 544d4002b98SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 545d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07))); 546ef588d5cSRichard Tran Mills vec_y = _mm512_mask_loadu_pd(vec_y, mask, &y[8 * i]); 5477285fed1SHong Zhang } else { 548ef588d5cSRichard Tran Mills vec_y = _mm512_loadu_pd(&y[8 * i]); 5497285fed1SHong Zhang } 5507285fed1SHong Zhang vec_y2 = _mm512_setzero_pd(); 5517285fed1SHong Zhang vec_y3 = _mm512_setzero_pd(); 5527285fed1SHong Zhang vec_y4 = _mm512_setzero_pd(); 5537285fed1SHong Zhang 5547285fed1SHong Zhang j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 5557285fed1SHong Zhang switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) { 5567285fed1SHong Zhang case 3: 5577285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 5589371c9d4SSatish Balay acolidx += 8; 5599371c9d4SSatish Balay aval += 8; 5607285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 5619371c9d4SSatish Balay acolidx += 8; 5629371c9d4SSatish Balay aval += 8; 5637285fed1SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 5649371c9d4SSatish Balay acolidx += 8; 5659371c9d4SSatish Balay aval += 8; 5667285fed1SHong Zhang j += 3; 5677285fed1SHong Zhang break; 5687285fed1SHong Zhang case 2: 5697285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 5709371c9d4SSatish Balay acolidx += 8; 5719371c9d4SSatish Balay aval += 8; 5727285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 5739371c9d4SSatish Balay acolidx += 8; 5749371c9d4SSatish Balay aval += 8; 5757285fed1SHong Zhang j += 2; 5767285fed1SHong Zhang break; 5777285fed1SHong Zhang case 1: 5787285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 5799371c9d4SSatish Balay acolidx += 8; 5809371c9d4SSatish Balay aval += 8; 5817285fed1SHong Zhang j += 1; 5827285fed1SHong Zhang break; 5837285fed1SHong Zhang } 5847285fed1SHong Zhang #pragma novector 5857285fed1SHong Zhang for (; j < (a->sliidx[i + 1] >> 3); j += 4) { 5867285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 5879371c9d4SSatish Balay acolidx += 8; 5889371c9d4SSatish Balay aval += 8; 5897285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 5909371c9d4SSatish Balay acolidx += 8; 5919371c9d4SSatish Balay aval += 8; 5927285fed1SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 5939371c9d4SSatish Balay acolidx += 8; 5949371c9d4SSatish Balay aval += 8; 5957285fed1SHong Zhang AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4); 5969371c9d4SSatish Balay acolidx += 8; 5979371c9d4SSatish Balay aval += 8; 5987285fed1SHong Zhang } 5997285fed1SHong Zhang 6007285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y2); 6017285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y3); 6027285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y4); 6037285fed1SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 604ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&z[8 * i], mask, vec_y); 605d4002b98SHong Zhang } else { 606ef588d5cSRichard Tran Mills _mm512_storeu_pd(&z[8 * i], vec_y); 607d4002b98SHong Zhang } 6087285fed1SHong Zhang } 60921cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 6107285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */ 6117285fed1SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 6127285fed1SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 6137285fed1SHong Zhang 6147285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 6157285fed1SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { 6167285fed1SHong Zhang for (r = 0; r < (A->rmap->n & 0x07); ++r) { 6177285fed1SHong Zhang row = 8 * i + r; 6187285fed1SHong Zhang yval = (MatScalar)0.0; 6197285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6207285fed1SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]]; 6217285fed1SHong Zhang z[row] = y[row] + yval; 6227285fed1SHong Zhang } 6237285fed1SHong Zhang break; 6247285fed1SHong Zhang } 6257285fed1SHong Zhang 6267285fed1SHong Zhang vec_y = _mm256_loadu_pd(y + 8 * i); 6277285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y + 8 * i + 4); 6287285fed1SHong Zhang 6297285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 6307285fed1SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 6317285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 632165f9cc3SJed Brown vec_x_tmp = _mm_setzero_pd(); 6337285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6347285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 635165f9cc3SJed Brown vec_x = _mm256_setzero_pd(); 6367285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 6377285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6387285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6397285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 6407285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y); 6417285fed1SHong Zhang aval += 4; 6427285fed1SHong Zhang 6437285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6447285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6457285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6467285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 6477285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6487285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6497285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 6507285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2); 6517285fed1SHong Zhang aval += 4; 6527285fed1SHong Zhang } 6537285fed1SHong Zhang 6547285fed1SHong Zhang _mm256_storeu_pd(z + i * 8, vec_y); 6557285fed1SHong Zhang _mm256_storeu_pd(z + i * 8 + 4, vec_y2); 6567285fed1SHong Zhang } 657d4002b98SHong Zhang #else 6587285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 6597285fed1SHong Zhang for (j = 0; j < 8; j++) sum[j] = 0.0; 660d4002b98SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 661d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 662d4002b98SHong Zhang sum[1] += aval[j + 1] * x[acolidx[j + 1]]; 663d4002b98SHong Zhang sum[2] += aval[j + 2] * x[acolidx[j + 2]]; 664d4002b98SHong Zhang sum[3] += aval[j + 3] * x[acolidx[j + 3]]; 665d4002b98SHong Zhang sum[4] += aval[j + 4] * x[acolidx[j + 4]]; 666d4002b98SHong Zhang sum[5] += aval[j + 5] * x[acolidx[j + 5]]; 667d4002b98SHong Zhang sum[6] += aval[j + 6] * x[acolidx[j + 6]]; 668d4002b98SHong Zhang sum[7] += aval[j + 7] * x[acolidx[j + 7]]; 669d4002b98SHong Zhang } 6707285fed1SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { 6717285fed1SHong Zhang for (j = 0; j < (A->rmap->n & 0x07); j++) z[8 * i + j] = y[8 * i + j] + sum[j]; 672d4002b98SHong Zhang } else { 6737285fed1SHong Zhang for (j = 0; j < 8; j++) z[8 * i + j] = y[8 * i + j] + sum[j]; 6747285fed1SHong Zhang } 675d4002b98SHong Zhang } 676d4002b98SHong Zhang #endif 677d4002b98SHong Zhang 6789566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz)); 6799566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 6809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayPair(yy, zz, &y, &z)); 681d4002b98SHong Zhang PetscFunctionReturn(0); 682d4002b98SHong Zhang } 683d4002b98SHong Zhang 684d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A, Vec xx, Vec zz, Vec yy) 685d71ae5a4SJacob Faibussowitsch { 686d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 687d4002b98SHong Zhang PetscScalar *y; 688d4002b98SHong Zhang const PetscScalar *x; 689d4002b98SHong Zhang const MatScalar *aval = a->val; 690d4002b98SHong Zhang const PetscInt *acolidx = a->colidx; 6917285fed1SHong Zhang PetscInt i, j, r, row, nnz_in_row, totalslices = a->totalslices; 692d4002b98SHong Zhang 693d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 694d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval) 695d4002b98SHong Zhang #endif 696d4002b98SHong Zhang 697d4002b98SHong Zhang PetscFunctionBegin; 698b94d7dedSBarry Smith if (A->symmetric == PETSC_BOOL3_TRUE) { 6999566063dSJacob Faibussowitsch PetscCall(MatMultAdd_SeqSELL(A, xx, zz, yy)); 7009fc32365SStefano Zampini PetscFunctionReturn(0); 7019fc32365SStefano Zampini } 7029566063dSJacob Faibussowitsch if (zz != yy) PetscCall(VecCopy(zz, yy)); 7039566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 7049566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y)); 705d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 7067285fed1SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { 7077285fed1SHong Zhang for (r = 0; r < (A->rmap->n & 0x07); ++r) { 7087285fed1SHong Zhang row = 8 * i + r; 7097285fed1SHong Zhang nnz_in_row = a->rlen[row]; 7107285fed1SHong Zhang for (j = 0; j < nnz_in_row; ++j) y[acolidx[8 * j + r]] += aval[8 * j + r] * x[row]; 7117285fed1SHong Zhang } 7127285fed1SHong Zhang break; 7137285fed1SHong Zhang } 7147285fed1SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 7157285fed1SHong Zhang y[acolidx[j]] += aval[j] * x[8 * i]; 7167285fed1SHong Zhang y[acolidx[j + 1]] += aval[j + 1] * x[8 * i + 1]; 7177285fed1SHong Zhang y[acolidx[j + 2]] += aval[j + 2] * x[8 * i + 2]; 7187285fed1SHong Zhang y[acolidx[j + 3]] += aval[j + 3] * x[8 * i + 3]; 7197285fed1SHong Zhang y[acolidx[j + 4]] += aval[j + 4] * x[8 * i + 4]; 7207285fed1SHong Zhang y[acolidx[j + 5]] += aval[j + 5] * x[8 * i + 5]; 7217285fed1SHong Zhang y[acolidx[j + 6]] += aval[j + 6] * x[8 * i + 6]; 7227285fed1SHong Zhang y[acolidx[j + 7]] += aval[j + 7] * x[8 * i + 7]; 723d4002b98SHong Zhang } 724d4002b98SHong Zhang } 7259566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->sliidx[a->totalslices])); 7269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 7279566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y)); 728d4002b98SHong Zhang PetscFunctionReturn(0); 729d4002b98SHong Zhang } 730d4002b98SHong Zhang 731d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_SeqSELL(Mat A, Vec xx, Vec yy) 732d71ae5a4SJacob Faibussowitsch { 733d4002b98SHong Zhang PetscFunctionBegin; 734b94d7dedSBarry Smith if (A->symmetric == PETSC_BOOL3_TRUE) { 7359566063dSJacob Faibussowitsch PetscCall(MatMult_SeqSELL(A, xx, yy)); 7369fc32365SStefano Zampini } else { 7379566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 7389566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd_SeqSELL(A, xx, yy, yy)); 7399fc32365SStefano Zampini } 740d4002b98SHong Zhang PetscFunctionReturn(0); 741d4002b98SHong Zhang } 742d4002b98SHong Zhang 743d4002b98SHong Zhang /* 744d4002b98SHong Zhang Checks for missing diagonals 745d4002b98SHong Zhang */ 746d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A, PetscBool *missing, PetscInt *d) 747d71ae5a4SJacob Faibussowitsch { 748d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 749d4002b98SHong Zhang PetscInt *diag, i; 750d4002b98SHong Zhang 751d4002b98SHong Zhang PetscFunctionBegin; 752d4002b98SHong Zhang *missing = PETSC_FALSE; 753d4002b98SHong Zhang if (A->rmap->n > 0 && !(a->colidx)) { 754d4002b98SHong Zhang *missing = PETSC_TRUE; 755d4002b98SHong Zhang if (d) *d = 0; 7569566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix has no entries therefore is missing diagonal\n")); 757d4002b98SHong Zhang } else { 758d4002b98SHong Zhang diag = a->diag; 759d4002b98SHong Zhang for (i = 0; i < A->rmap->n; i++) { 760d4002b98SHong Zhang if (diag[i] == -1) { 761d4002b98SHong Zhang *missing = PETSC_TRUE; 762d4002b98SHong Zhang if (d) *d = i; 7639566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix is missing diagonal number %" PetscInt_FMT "\n", i)); 764d4002b98SHong Zhang break; 765d4002b98SHong Zhang } 766d4002b98SHong Zhang } 767d4002b98SHong Zhang } 768d4002b98SHong Zhang PetscFunctionReturn(0); 769d4002b98SHong Zhang } 770d4002b98SHong Zhang 771d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A) 772d71ae5a4SJacob Faibussowitsch { 773d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 774d4002b98SHong Zhang PetscInt i, j, m = A->rmap->n, shift; 775d4002b98SHong Zhang 776d4002b98SHong Zhang PetscFunctionBegin; 777d4002b98SHong Zhang if (!a->diag) { 7789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &a->diag)); 779d4002b98SHong Zhang a->free_diag = PETSC_TRUE; 780d4002b98SHong Zhang } 781d4002b98SHong Zhang for (i = 0; i < m; i++) { /* loop over rows */ 782d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); /* starting index of the row i */ 783d4002b98SHong Zhang a->diag[i] = -1; 784d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 785d4002b98SHong Zhang if (a->colidx[shift + j * 8] == i) { 786d4002b98SHong Zhang a->diag[i] = shift + j * 8; 787d4002b98SHong Zhang break; 788d4002b98SHong Zhang } 789d4002b98SHong Zhang } 790d4002b98SHong Zhang } 791d4002b98SHong Zhang PetscFunctionReturn(0); 792d4002b98SHong Zhang } 793d4002b98SHong Zhang 794d4002b98SHong Zhang /* 795d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways 796d4002b98SHong Zhang */ 797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A, PetscScalar omega, PetscScalar fshift) 798d71ae5a4SJacob Faibussowitsch { 799d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 800d4002b98SHong Zhang PetscInt i, *diag, m = A->rmap->n; 801d4002b98SHong Zhang MatScalar *val = a->val; 802d4002b98SHong Zhang PetscScalar *idiag, *mdiag; 803d4002b98SHong Zhang 804d4002b98SHong Zhang PetscFunctionBegin; 805d4002b98SHong Zhang if (a->idiagvalid) PetscFunctionReturn(0); 8069566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqSELL(A)); 807d4002b98SHong Zhang diag = a->diag; 808d4002b98SHong Zhang if (!a->idiag) { 8099566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(m, &a->idiag, m, &a->mdiag, m, &a->ssor_work)); 810d4002b98SHong Zhang val = a->val; 811d4002b98SHong Zhang } 812d4002b98SHong Zhang mdiag = a->mdiag; 813d4002b98SHong Zhang idiag = a->idiag; 814d4002b98SHong Zhang 815d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) { 816d4002b98SHong Zhang for (i = 0; i < m; i++) { 817d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 818d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */ 819d4002b98SHong Zhang if (PetscRealPart(fshift)) { 8209566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Zero diagonal on row %" PetscInt_FMT "\n", i)); 821d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 822d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0; 823d4002b98SHong Zhang A->factorerror_zeropivot_row = i; 82498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Zero diagonal on row %" PetscInt_FMT, i); 825d4002b98SHong Zhang } 826d4002b98SHong Zhang idiag[i] = 1.0 / val[diag[i]]; 827d4002b98SHong Zhang } 8289566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(m)); 829d4002b98SHong Zhang } else { 830d4002b98SHong Zhang for (i = 0; i < m; i++) { 831d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 832d4002b98SHong Zhang idiag[i] = omega / (fshift + val[diag[i]]); 833d4002b98SHong Zhang } 8349566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * m)); 835d4002b98SHong Zhang } 836d4002b98SHong Zhang a->idiagvalid = PETSC_TRUE; 837d4002b98SHong Zhang PetscFunctionReturn(0); 838d4002b98SHong Zhang } 839d4002b98SHong Zhang 840d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_SeqSELL(Mat A) 841d71ae5a4SJacob Faibussowitsch { 842d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 843d4002b98SHong Zhang 844d4002b98SHong Zhang PetscFunctionBegin; 8459566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(a->val, a->sliidx[a->totalslices])); 8469566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 847d4002b98SHong Zhang PetscFunctionReturn(0); 848d4002b98SHong Zhang } 849d4002b98SHong Zhang 850d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqSELL(Mat A) 851d71ae5a4SJacob Faibussowitsch { 852d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 853d4002b98SHong Zhang 854d4002b98SHong Zhang PetscFunctionBegin; 855d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 856c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->n, A->cmap->n, a->nz); 857d4002b98SHong Zhang #endif 8589566063dSJacob Faibussowitsch PetscCall(MatSeqXSELLFreeSELL(A, &a->val, &a->colidx)); 8599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->row)); 8609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->col)); 8619566063dSJacob Faibussowitsch PetscCall(PetscFree(a->diag)); 8629566063dSJacob Faibussowitsch PetscCall(PetscFree(a->rlen)); 8639566063dSJacob Faibussowitsch PetscCall(PetscFree(a->sliidx)); 8649566063dSJacob Faibussowitsch PetscCall(PetscFree3(a->idiag, a->mdiag, a->ssor_work)); 8659566063dSJacob Faibussowitsch PetscCall(PetscFree(a->solve_work)); 8669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->icol)); 8679566063dSJacob Faibussowitsch PetscCall(PetscFree(a->saved_values)); 8689566063dSJacob Faibussowitsch PetscCall(PetscFree2(a->getrowcols, a->getrowvals)); 869d4002b98SHong Zhang 8709566063dSJacob Faibussowitsch PetscCall(PetscFree(A->data)); 871d4002b98SHong Zhang 8729566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL)); 8739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL)); 8749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL)); 8759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetPreallocation_C", NULL)); 8762e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetArray_C", NULL)); 8772e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLRestoreArray_C", NULL)); 8782e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqaij_C", NULL)); 879d4002b98SHong Zhang PetscFunctionReturn(0); 880d4002b98SHong Zhang } 881d4002b98SHong Zhang 882d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_SeqSELL(Mat A, MatOption op, PetscBool flg) 883d71ae5a4SJacob Faibussowitsch { 884d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 885d4002b98SHong Zhang 886d4002b98SHong Zhang PetscFunctionBegin; 887d4002b98SHong Zhang switch (op) { 888d71ae5a4SJacob Faibussowitsch case MAT_ROW_ORIENTED: 889d71ae5a4SJacob Faibussowitsch a->roworiented = flg; 890d71ae5a4SJacob Faibussowitsch break; 891d71ae5a4SJacob Faibussowitsch case MAT_KEEP_NONZERO_PATTERN: 892d71ae5a4SJacob Faibussowitsch a->keepnonzeropattern = flg; 893d71ae5a4SJacob Faibussowitsch break; 894d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_LOCATIONS: 895d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? 0 : 1); 896d71ae5a4SJacob Faibussowitsch break; 897d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_LOCATION_ERR: 898d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? -1 : 0); 899d71ae5a4SJacob Faibussowitsch break; 900d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_ALLOCATION_ERR: 901d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? -2 : 0); 902d71ae5a4SJacob Faibussowitsch break; 903d71ae5a4SJacob Faibussowitsch case MAT_UNUSED_NONZERO_LOCATION_ERR: 904d71ae5a4SJacob Faibussowitsch a->nounused = (flg ? -1 : 0); 905d71ae5a4SJacob Faibussowitsch break; 9068c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 907d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 908d4002b98SHong Zhang case MAT_USE_HASH_TABLE: 909d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 910d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 911d71ae5a4SJacob Faibussowitsch break; 912d4002b98SHong Zhang case MAT_SPD: 913d4002b98SHong Zhang case MAT_SYMMETRIC: 914d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 915d4002b98SHong Zhang case MAT_HERMITIAN: 916d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 917b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 918b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 919d4002b98SHong Zhang /* These options are handled directly by MatSetOption() */ 920d4002b98SHong Zhang break; 921d71ae5a4SJacob Faibussowitsch default: 922d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 923d4002b98SHong Zhang } 924d4002b98SHong Zhang PetscFunctionReturn(0); 925d4002b98SHong Zhang } 926d4002b98SHong Zhang 927d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_SeqSELL(Mat A, Vec v) 928d71ae5a4SJacob Faibussowitsch { 929d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 930d4002b98SHong Zhang PetscInt i, j, n, shift; 931d4002b98SHong Zhang PetscScalar *x, zero = 0.0; 932d4002b98SHong Zhang 933d4002b98SHong Zhang PetscFunctionBegin; 9349566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &n)); 93508401ef6SPierre Jolivet PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 936d4002b98SHong Zhang 937d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) { 938d4002b98SHong Zhang PetscInt *diag = a->diag; 9399566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 940d4002b98SHong Zhang for (i = 0; i < n; i++) x[i] = 1.0 / a->val[diag[i]]; 9419566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 942d4002b98SHong Zhang PetscFunctionReturn(0); 943d4002b98SHong Zhang } 944d4002b98SHong Zhang 9459566063dSJacob Faibussowitsch PetscCall(VecSet(v, zero)); 9469566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 947d4002b98SHong Zhang for (i = 0; i < n; i++) { /* loop over rows */ 948d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); /* starting index of the row i */ 949d4002b98SHong Zhang x[i] = 0; 950d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 951d4002b98SHong Zhang if (a->colidx[shift + j * 8] == i) { 952d4002b98SHong Zhang x[i] = a->val[shift + j * 8]; 953d4002b98SHong Zhang break; 954d4002b98SHong Zhang } 955d4002b98SHong Zhang } 956d4002b98SHong Zhang } 9579566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 958d4002b98SHong Zhang PetscFunctionReturn(0); 959d4002b98SHong Zhang } 960d4002b98SHong Zhang 961d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_SeqSELL(Mat A, Vec ll, Vec rr) 962d71ae5a4SJacob Faibussowitsch { 963d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 964d4002b98SHong Zhang const PetscScalar *l, *r; 965d4002b98SHong Zhang PetscInt i, j, m, n, row; 966d4002b98SHong Zhang 967d4002b98SHong Zhang PetscFunctionBegin; 968d4002b98SHong Zhang if (ll) { 969d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine 970d4002b98SHong Zhang by MatDiagonalScale_MPISELL */ 9719566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &m)); 97208401ef6SPierre Jolivet PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector wrong length"); 9739566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 974d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 975dab86139SHong Zhang if (i == a->totalslices - 1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 976dab86139SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = ((row + 1) & 0x07)) { 977dab86139SHong Zhang if (row < (A->rmap->n & 0x07)) a->val[j] *= l[8 * i + row]; 978dab86139SHong Zhang } 979dab86139SHong Zhang } else { 980ad540459SPierre Jolivet for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = ((row + 1) & 0x07)) a->val[j] *= l[8 * i + row]; 981d4002b98SHong Zhang } 982dab86139SHong Zhang } 9839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 9849566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 985d4002b98SHong Zhang } 986d4002b98SHong Zhang if (rr) { 9879566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &n)); 98808401ef6SPierre Jolivet PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vector wrong length"); 9899566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &r)); 990d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 991dab86139SHong Zhang if (i == a->totalslices - 1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 992dab86139SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = ((row + 1) & 0x07)) { 993dab86139SHong Zhang if (row < (A->rmap->n & 0x07)) a->val[j] *= r[a->colidx[j]]; 994dab86139SHong Zhang } 995dab86139SHong Zhang } else { 996ad540459SPierre Jolivet for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j++) a->val[j] *= r[a->colidx[j]]; 997d4002b98SHong Zhang } 998dab86139SHong Zhang } 9999566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &r)); 10009566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 1001d4002b98SHong Zhang } 10029566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 1003d4002b98SHong Zhang PetscFunctionReturn(0); 1004d4002b98SHong Zhang } 1005d4002b98SHong Zhang 1006d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[]) 1007d71ae5a4SJacob Faibussowitsch { 1008d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1009d4002b98SHong Zhang PetscInt *cp, i, k, low, high, t, row, col, l; 1010d4002b98SHong Zhang PetscInt shift; 1011d4002b98SHong Zhang MatScalar *vp; 1012d4002b98SHong Zhang 1013d4002b98SHong Zhang PetscFunctionBegin; 101468aafef3SStefano Zampini for (k = 0; k < m; k++) { /* loop over requested rows */ 1015d4002b98SHong Zhang row = im[k]; 1016d4002b98SHong Zhang if (row < 0) continue; 10176bdcaf15SBarry Smith PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1); 1018d4002b98SHong Zhang shift = a->sliidx[row >> 3] + (row & 0x07); /* starting index of the row */ 1019d4002b98SHong Zhang cp = a->colidx + shift; /* pointer to the row */ 1020d4002b98SHong Zhang vp = a->val + shift; /* pointer to the row */ 102168aafef3SStefano Zampini for (l = 0; l < n; l++) { /* loop over requested columns */ 1022d4002b98SHong Zhang col = in[l]; 1023d4002b98SHong Zhang if (col < 0) continue; 10246bdcaf15SBarry Smith PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1); 10259371c9d4SSatish Balay high = a->rlen[row]; 10269371c9d4SSatish Balay low = 0; /* assume unsorted */ 1027d4002b98SHong Zhang while (high - low > 5) { 1028d4002b98SHong Zhang t = (low + high) / 2; 1029d4002b98SHong Zhang if (*(cp + t * 8) > col) high = t; 1030d4002b98SHong Zhang else low = t; 1031d4002b98SHong Zhang } 1032d4002b98SHong Zhang for (i = low; i < high; i++) { 1033d4002b98SHong Zhang if (*(cp + 8 * i) > col) break; 1034d4002b98SHong Zhang if (*(cp + 8 * i) == col) { 1035d4002b98SHong Zhang *v++ = *(vp + 8 * i); 1036d4002b98SHong Zhang goto finished; 1037d4002b98SHong Zhang } 1038d4002b98SHong Zhang } 1039d4002b98SHong Zhang *v++ = 0.0; 1040d4002b98SHong Zhang finished:; 1041d4002b98SHong Zhang } 1042d4002b98SHong Zhang } 1043d4002b98SHong Zhang PetscFunctionReturn(0); 1044d4002b98SHong Zhang } 1045d4002b98SHong Zhang 1046d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_ASCII(Mat A, PetscViewer viewer) 1047d71ae5a4SJacob Faibussowitsch { 1048d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1049d4002b98SHong Zhang PetscInt i, j, m = A->rmap->n, shift; 1050d4002b98SHong Zhang const char *name; 1051d4002b98SHong Zhang PetscViewerFormat format; 1052d4002b98SHong Zhang 1053d4002b98SHong Zhang PetscFunctionBegin; 10549566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1055d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) { 1056d4002b98SHong Zhang PetscInt nofinalvalue = 0; 1057d4002b98SHong Zhang /* 1058d4002b98SHong Zhang if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) { 1059d4002b98SHong Zhang nofinalvalue = 1; 1060d4002b98SHong Zhang } 1061d4002b98SHong Zhang */ 10629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 10639566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n", m, A->cmap->n)); 10649566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Nonzeros = %" PetscInt_FMT " \n", a->nz)); 1065d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 10669566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",4);\n", a->nz + nofinalvalue)); 1067d4002b98SHong Zhang #else 10689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",3);\n", a->nz + nofinalvalue)); 1069d4002b98SHong Zhang #endif 10709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = [\n")); 1071d4002b98SHong Zhang 1072d4002b98SHong Zhang for (i = 0; i < m; i++) { 1073d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); 1074d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1075d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 10769566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n", i + 1, a->colidx[shift + 8 * j] + 1, (double)PetscRealPart(a->val[shift + 8 * j]), (double)PetscImaginaryPart(a->val[shift + 8 * j]))); 1077d4002b98SHong Zhang #else 10789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n", i + 1, a->colidx[shift + 8 * j] + 1, (double)a->val[shift + 8 * j])); 1079d4002b98SHong Zhang #endif 1080d4002b98SHong Zhang } 1081d4002b98SHong Zhang } 1082d4002b98SHong Zhang /* 1083d4002b98SHong Zhang if (nofinalvalue) { 1084d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 10859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",m,A->cmap->n,0.,0.)); 1086d4002b98SHong Zhang #else 10879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",m,A->cmap->n,0.0)); 1088d4002b98SHong Zhang #endif 1089d4002b98SHong Zhang } 1090d4002b98SHong Zhang */ 10919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A, &name)); 10929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "];\n %s = spconvert(zzz);\n", name)); 10939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1094d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) { 1095d4002b98SHong Zhang PetscFunctionReturn(0); 1096d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) { 10979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1098d4002b98SHong Zhang for (i = 0; i < m; i++) { 10999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i)); 1100d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); 1101d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1102d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1103d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift + 8 * j]) > 0.0 && PetscRealPart(a->val[shift + 8 * j]) != 0.0) { 11049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + 8 * j], (double)PetscRealPart(a->val[shift + 8 * j]), (double)PetscImaginaryPart(a->val[shift + 8 * j]))); 1105d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift + 8 * j]) < 0.0 && PetscRealPart(a->val[shift + 8 * j]) != 0.0) { 11069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + 8 * j], (double)PetscRealPart(a->val[shift + 8 * j]), (double)-PetscImaginaryPart(a->val[shift + 8 * j]))); 1107d4002b98SHong Zhang } else if (PetscRealPart(a->val[shift + 8 * j]) != 0.0) { 11089566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + 8 * j], (double)PetscRealPart(a->val[shift + 8 * j]))); 1109d4002b98SHong Zhang } 1110d4002b98SHong Zhang #else 11119566063dSJacob Faibussowitsch if (a->val[shift + 8 * j] != 0.0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + 8 * j], (double)a->val[shift + 8 * j])); 1112d4002b98SHong Zhang #endif 1113d4002b98SHong Zhang } 11149566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1115d4002b98SHong Zhang } 11169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1117d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) { 1118d4002b98SHong Zhang PetscInt cnt = 0, jcnt; 1119d4002b98SHong Zhang PetscScalar value; 1120d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1121d4002b98SHong Zhang PetscBool realonly = PETSC_TRUE; 1122d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) { 1123d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) { 1124d4002b98SHong Zhang realonly = PETSC_FALSE; 1125d4002b98SHong Zhang break; 1126d4002b98SHong Zhang } 1127d4002b98SHong Zhang } 1128d4002b98SHong Zhang #endif 1129d4002b98SHong Zhang 11309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1131d4002b98SHong Zhang for (i = 0; i < m; i++) { 1132d4002b98SHong Zhang jcnt = 0; 1133d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); 1134d4002b98SHong Zhang for (j = 0; j < A->cmap->n; j++) { 1135d4002b98SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift + 8 * j]) { 1136d4002b98SHong Zhang value = a->val[cnt++]; 1137d4002b98SHong Zhang jcnt++; 1138d4002b98SHong Zhang } else { 1139d4002b98SHong Zhang value = 0.0; 1140d4002b98SHong Zhang } 1141d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1142d4002b98SHong Zhang if (realonly) { 11439566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)PetscRealPart(value))); 1144d4002b98SHong Zhang } else { 11459566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e+%7.5e i ", (double)PetscRealPart(value), (double)PetscImaginaryPart(value))); 1146d4002b98SHong Zhang } 1147d4002b98SHong Zhang #else 11489566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)value)); 1149d4002b98SHong Zhang #endif 1150d4002b98SHong Zhang } 11519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1152d4002b98SHong Zhang } 11539566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1154d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) { 1155d4002b98SHong Zhang PetscInt fshift = 1; 11569566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1157d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 11589566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate complex general\n")); 1159d4002b98SHong Zhang #else 11609566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate real general\n")); 1161d4002b98SHong Zhang #endif 11629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz)); 1163d4002b98SHong Zhang for (i = 0; i < m; i++) { 1164d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); 1165d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1166d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 11679566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n", i + fshift, a->colidx[shift + 8 * j] + fshift, (double)PetscRealPart(a->val[shift + 8 * j]), (double)PetscImaginaryPart(a->val[shift + 8 * j]))); 1168d4002b98SHong Zhang #else 11699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g\n", i + fshift, a->colidx[shift + 8 * j] + fshift, (double)a->val[shift + 8 * j])); 1170d4002b98SHong Zhang #endif 1171d4002b98SHong Zhang } 1172d4002b98SHong Zhang } 11739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 117468aafef3SStefano Zampini } else if (format == PETSC_VIEWER_NATIVE) { 117568aafef3SStefano Zampini for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 117668aafef3SStefano Zampini PetscInt row; 11779566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n", i, a->sliidx[i], a->sliidx[i + 1])); 117868aafef3SStefano Zampini for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = ((row + 1) & 0x07)) { 117968aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX) 118068aafef3SStefano Zampini if (PetscImaginaryPart(a->val[j]) > 0.0) { 11819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n", 8 * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j]))); 118268aafef3SStefano Zampini } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 11839566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n", 8 * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), -(double)PetscImaginaryPart(a->val[j]))); 118468aafef3SStefano Zampini } else { 11859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g\n", 8 * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]))); 118668aafef3SStefano Zampini } 118768aafef3SStefano Zampini #else 11889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g\n", 8 * i + row, a->colidx[j], (double)a->val[j])); 118968aafef3SStefano Zampini #endif 119068aafef3SStefano Zampini } 119168aafef3SStefano Zampini } 1192d4002b98SHong Zhang } else { 11939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1194d4002b98SHong Zhang if (A->factortype) { 1195d4002b98SHong Zhang for (i = 0; i < m; i++) { 1196d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); 11979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i)); 1198d4002b98SHong Zhang /* L part */ 1199d4002b98SHong Zhang for (j = shift; j < a->diag[i]; j += 8) { 1200d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1201d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift + 8 * j]) > 0.0) { 12029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j]))); 1203d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift + 8 * j]) < 0.0) { 12049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j])))); 1205d4002b98SHong Zhang } else { 12069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j]))); 1207d4002b98SHong Zhang } 1208d4002b98SHong Zhang #else 12099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j])); 1210d4002b98SHong Zhang #endif 1211d4002b98SHong Zhang } 1212d4002b98SHong Zhang /* diagonal */ 1213d4002b98SHong Zhang j = a->diag[i]; 1214d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1215d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)PetscImaginaryPart(1.0 / a->val[j]))); 1217d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 12189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)(-PetscImaginaryPart(1.0 / a->val[j])))); 1219d4002b98SHong Zhang } else { 12209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]))); 1221d4002b98SHong Zhang } 1222d4002b98SHong Zhang #else 12239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)(1.0 / a->val[j]))); 1224d4002b98SHong Zhang #endif 1225d4002b98SHong Zhang 1226d4002b98SHong Zhang /* U part */ 1227d4002b98SHong Zhang for (j = a->diag[i] + 1; j < shift + 8 * a->rlen[i]; j += 8) { 1228d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1229d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 12309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j]))); 1231d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 12329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j])))); 1233d4002b98SHong Zhang } else { 12349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j]))); 1235d4002b98SHong Zhang } 1236d4002b98SHong Zhang #else 12379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j])); 1238d4002b98SHong Zhang #endif 1239d4002b98SHong Zhang } 12409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1241d4002b98SHong Zhang } 1242d4002b98SHong Zhang } else { 1243d4002b98SHong Zhang for (i = 0; i < m; i++) { 1244d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); 12459566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i)); 1246d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1247d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1248d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 12499566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + 8 * j], (double)PetscRealPart(a->val[shift + 8 * j]), (double)PetscImaginaryPart(a->val[shift + 8 * j]))); 1250d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 12519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + 8 * j], (double)PetscRealPart(a->val[shift + 8 * j]), (double)-PetscImaginaryPart(a->val[shift + 8 * j]))); 1252d4002b98SHong Zhang } else { 12539566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + 8 * j], (double)PetscRealPart(a->val[shift + 8 * j]))); 1254d4002b98SHong Zhang } 1255d4002b98SHong Zhang #else 12569566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + 8 * j], (double)a->val[shift + 8 * j])); 1257d4002b98SHong Zhang #endif 1258d4002b98SHong Zhang } 12599566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1260d4002b98SHong Zhang } 1261d4002b98SHong Zhang } 12629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1263d4002b98SHong Zhang } 12649566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 1265d4002b98SHong Zhang PetscFunctionReturn(0); 1266d4002b98SHong Zhang } 1267d4002b98SHong Zhang 1268d4002b98SHong Zhang #include <petscdraw.h> 1269d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw, void *Aa) 1270d71ae5a4SJacob Faibussowitsch { 1271d4002b98SHong Zhang Mat A = (Mat)Aa; 1272d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1273d4002b98SHong Zhang PetscInt i, j, m = A->rmap->n, shift; 1274d4002b98SHong Zhang int color; 1275d4002b98SHong Zhang PetscReal xl, yl, xr, yr, x_l, x_r, y_l, y_r; 1276d4002b98SHong Zhang PetscViewer viewer; 1277d4002b98SHong Zhang PetscViewerFormat format; 1278d4002b98SHong Zhang 1279d4002b98SHong Zhang PetscFunctionBegin; 12809566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer)); 12819566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 12829566063dSJacob Faibussowitsch PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr)); 1283d4002b98SHong Zhang 1284d4002b98SHong Zhang /* loop over matrix elements drawing boxes */ 1285d4002b98SHong Zhang 1286d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1287d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1288d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */ 1289d4002b98SHong Zhang color = PETSC_DRAW_BLUE; 1290d4002b98SHong Zhang for (i = 0; i < m; i++) { 1291d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); /* starting index of the row i */ 12929371c9d4SSatish Balay y_l = m - i - 1.0; 12939371c9d4SSatish Balay y_r = y_l + 1.0; 1294d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 12959371c9d4SSatish Balay x_l = a->colidx[shift + j * 8]; 12969371c9d4SSatish Balay x_r = x_l + 1.0; 1297d4002b98SHong Zhang if (PetscRealPart(a->val[shift + 8 * j]) >= 0.) continue; 12989566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1299d4002b98SHong Zhang } 1300d4002b98SHong Zhang } 1301d4002b98SHong Zhang color = PETSC_DRAW_CYAN; 1302d4002b98SHong Zhang for (i = 0; i < m; i++) { 1303d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); 13049371c9d4SSatish Balay y_l = m - i - 1.0; 13059371c9d4SSatish Balay y_r = y_l + 1.0; 1306d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 13079371c9d4SSatish Balay x_l = a->colidx[shift + j * 8]; 13089371c9d4SSatish Balay x_r = x_l + 1.0; 1309d4002b98SHong Zhang if (a->val[shift + 8 * j] != 0.) continue; 13109566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1311d4002b98SHong Zhang } 1312d4002b98SHong Zhang } 1313d4002b98SHong Zhang color = PETSC_DRAW_RED; 1314d4002b98SHong Zhang for (i = 0; i < m; i++) { 1315d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); 13169371c9d4SSatish Balay y_l = m - i - 1.0; 13179371c9d4SSatish Balay y_r = y_l + 1.0; 1318d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 13199371c9d4SSatish Balay x_l = a->colidx[shift + j * 8]; 13209371c9d4SSatish Balay x_r = x_l + 1.0; 1321d4002b98SHong Zhang if (PetscRealPart(a->val[shift + 8 * j]) <= 0.) continue; 13229566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1323d4002b98SHong Zhang } 1324d4002b98SHong Zhang } 1325d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1326d4002b98SHong Zhang } else { 1327d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */ 1328d4002b98SHong Zhang /* first determine max of all nonzero values */ 1329d4002b98SHong Zhang PetscReal minv = 0.0, maxv = 0.0; 1330d4002b98SHong Zhang PetscInt count = 0; 1331d4002b98SHong Zhang PetscDraw popup; 1332d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) { 1333d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]); 1334d4002b98SHong Zhang } 1335d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL; 13369566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw, &popup)); 13379566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup, minv, maxv)); 1338d4002b98SHong Zhang 1339d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1340d4002b98SHong Zhang for (i = 0; i < m; i++) { 1341d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); 1342d4002b98SHong Zhang y_l = m - i - 1.0; 1343d4002b98SHong Zhang y_r = y_l + 1.0; 1344d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1345d4002b98SHong Zhang x_l = a->colidx[shift + j * 8]; 1346d4002b98SHong Zhang x_r = x_l + 1.0; 1347d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]), minv, maxv); 13489566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1349d4002b98SHong Zhang count++; 1350d4002b98SHong Zhang } 1351d4002b98SHong Zhang } 1352d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1353d4002b98SHong Zhang } 1354d4002b98SHong Zhang PetscFunctionReturn(0); 1355d4002b98SHong Zhang } 1356d4002b98SHong Zhang 1357d4002b98SHong Zhang #include <petscdraw.h> 1358d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_Draw(Mat A, PetscViewer viewer) 1359d71ae5a4SJacob Faibussowitsch { 1360d4002b98SHong Zhang PetscDraw draw; 1361d4002b98SHong Zhang PetscReal xr, yr, xl, yl, h, w; 1362d4002b98SHong Zhang PetscBool isnull; 1363d4002b98SHong Zhang 1364d4002b98SHong Zhang PetscFunctionBegin; 13659566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13669566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 1367d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 1368d4002b98SHong Zhang 13699371c9d4SSatish Balay xr = A->cmap->n; 13709371c9d4SSatish Balay yr = A->rmap->n; 13719371c9d4SSatish Balay h = yr / 10.0; 13729371c9d4SSatish Balay w = xr / 10.0; 13739371c9d4SSatish Balay xr += w; 13749371c9d4SSatish Balay yr += h; 13759371c9d4SSatish Balay xl = -w; 13769371c9d4SSatish Balay yl = -h; 13779566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr)); 13789566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer)); 13799566063dSJacob Faibussowitsch PetscCall(PetscDrawZoom(draw, MatView_SeqSELL_Draw_Zoom, A)); 13809566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL)); 13819566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 1382d4002b98SHong Zhang PetscFunctionReturn(0); 1383d4002b98SHong Zhang } 1384d4002b98SHong Zhang 1385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL(Mat A, PetscViewer viewer) 1386d71ae5a4SJacob Faibussowitsch { 1387d4002b98SHong Zhang PetscBool iascii, isbinary, isdraw; 1388d4002b98SHong Zhang 1389d4002b98SHong Zhang PetscFunctionBegin; 13909566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 1393d4002b98SHong Zhang if (iascii) { 13949566063dSJacob Faibussowitsch PetscCall(MatView_SeqSELL_ASCII(A, viewer)); 1395d4002b98SHong Zhang } else if (isbinary) { 13969566063dSJacob Faibussowitsch /* PetscCall(MatView_SeqSELL_Binary(A,viewer)); */ 13971baa6e33SBarry Smith } else if (isdraw) PetscCall(MatView_SeqSELL_Draw(A, viewer)); 1398d4002b98SHong Zhang PetscFunctionReturn(0); 1399d4002b98SHong Zhang } 1400d4002b98SHong Zhang 1401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A, MatAssemblyType mode) 1402d71ae5a4SJacob Faibussowitsch { 1403d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1404d4002b98SHong Zhang PetscInt i, shift, row_in_slice, row, nrow, *cp, lastcol, j, k; 1405d4002b98SHong Zhang MatScalar *vp; 1406d4002b98SHong Zhang 1407d4002b98SHong Zhang PetscFunctionBegin; 1408d4002b98SHong Zhang if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1409d4002b98SHong Zhang /* To do: compress out the unused elements */ 14109566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqSELL(A)); 14119566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n", A->rmap->n, A->cmap->n, a->maxallocmat, a->sliidx[a->totalslices], a->nz, a->sliidx[a->totalslices] - a->nz)); 14129566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n", a->reallocs)); 14139566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Maximum nonzeros in any row is %" PetscInt_FMT "\n", a->rlenmax)); 1414d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */ 1415d4002b98SHong Zhang for (i = 0; i < a->totalslices; ++i) { 1416d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */ 1417d4002b98SHong Zhang cp = a->colidx + shift; /* pointer to the column indices of the slice */ 1418d4002b98SHong Zhang vp = a->val + shift; /* pointer to the nonzero values of the slice */ 1419d4002b98SHong Zhang for (row_in_slice = 0; row_in_slice < 8; ++row_in_slice) { /* loop over rows in the slice */ 1420d4002b98SHong Zhang row = 8 * i + row_in_slice; 1421d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */ 1422d4002b98SHong Zhang /* 1423d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication. 1424d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded. 1425d4002b98SHong Zhang */ 1426d4002b98SHong Zhang lastcol = 0; 1427d4002b98SHong Zhang if (nrow > 0) { /* nonempty row */ 1428d4002b98SHong Zhang lastcol = cp[8 * (nrow - 1) + row_in_slice]; /* use the index from the last nonzero at current row */ 1429d4002b98SHong Zhang } else if (!row_in_slice) { /* first row of the currect slice is empty */ 1430d4002b98SHong Zhang for (j = 1; j < 8; j++) { 1431d4002b98SHong Zhang if (a->rlen[8 * i + j]) { 1432d4002b98SHong Zhang lastcol = cp[j]; 1433d4002b98SHong Zhang break; 1434d4002b98SHong Zhang } 1435d4002b98SHong Zhang } 1436d4002b98SHong Zhang } else { 1437d4002b98SHong Zhang if (a->sliidx[i + 1] != shift) lastcol = cp[row_in_slice - 1]; /* use the index from the previous row */ 1438d4002b98SHong Zhang } 1439d4002b98SHong Zhang 1440d4002b98SHong Zhang for (k = nrow; k < (a->sliidx[i + 1] - shift) / 8; ++k) { 1441d4002b98SHong Zhang cp[8 * k + row_in_slice] = lastcol; 1442d4002b98SHong Zhang vp[8 * k + row_in_slice] = (MatScalar)0; 1443d4002b98SHong Zhang } 1444d4002b98SHong Zhang } 1445d4002b98SHong Zhang } 1446d4002b98SHong Zhang 1447d4002b98SHong Zhang A->info.mallocs += a->reallocs; 1448d4002b98SHong Zhang a->reallocs = 0; 1449d4002b98SHong Zhang 14509566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 1451d4002b98SHong Zhang PetscFunctionReturn(0); 1452d4002b98SHong Zhang } 1453d4002b98SHong Zhang 1454d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_SeqSELL(Mat A, MatInfoType flag, MatInfo *info) 1455d71ae5a4SJacob Faibussowitsch { 1456d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1457d4002b98SHong Zhang 1458d4002b98SHong Zhang PetscFunctionBegin; 1459d4002b98SHong Zhang info->block_size = 1.0; 14603966268fSBarry Smith info->nz_allocated = a->maxallocmat; 14613966268fSBarry Smith info->nz_used = a->sliidx[a->totalslices]; /* include padding zeros */ 14623966268fSBarry Smith info->nz_unneeded = (a->maxallocmat - a->sliidx[a->totalslices]); 14633966268fSBarry Smith info->assemblies = A->num_ass; 14643966268fSBarry Smith info->mallocs = A->info.mallocs; 14654dfa11a4SJacob Faibussowitsch info->memory = 0; /* REVIEW ME */ 1466d4002b98SHong Zhang if (A->factortype) { 1467d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given; 1468d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed; 1469d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs; 1470d4002b98SHong Zhang } else { 1471d4002b98SHong Zhang info->fill_ratio_given = 0; 1472d4002b98SHong Zhang info->fill_ratio_needed = 0; 1473d4002b98SHong Zhang info->factor_mallocs = 0; 1474d4002b98SHong Zhang } 1475d4002b98SHong Zhang PetscFunctionReturn(0); 1476d4002b98SHong Zhang } 1477d4002b98SHong Zhang 1478d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is) 1479d71ae5a4SJacob Faibussowitsch { 1480d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1481d4002b98SHong Zhang PetscInt shift, i, k, l, low, high, t, ii, row, col, nrow; 1482d4002b98SHong Zhang PetscInt *cp, nonew = a->nonew, lastcol = -1; 1483d4002b98SHong Zhang MatScalar *vp, value; 1484d4002b98SHong Zhang 1485d4002b98SHong Zhang PetscFunctionBegin; 1486d4002b98SHong Zhang for (k = 0; k < m; k++) { /* loop over added rows */ 1487d4002b98SHong Zhang row = im[k]; 1488d4002b98SHong Zhang if (row < 0) continue; 14896bdcaf15SBarry Smith PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1); 1490d4002b98SHong Zhang shift = a->sliidx[row >> 3] + (row & 0x07); /* starting index of the row */ 1491d4002b98SHong Zhang cp = a->colidx + shift; /* pointer to the row */ 1492d4002b98SHong Zhang vp = a->val + shift; /* pointer to the row */ 1493d4002b98SHong Zhang nrow = a->rlen[row]; 1494d4002b98SHong Zhang low = 0; 1495d4002b98SHong Zhang high = nrow; 1496d4002b98SHong Zhang 1497d4002b98SHong Zhang for (l = 0; l < n; l++) { /* loop over added columns */ 1498d4002b98SHong Zhang col = in[l]; 1499d4002b98SHong Zhang if (col < 0) continue; 15006bdcaf15SBarry Smith PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1); 1501d4002b98SHong Zhang if (a->roworiented) { 1502d4002b98SHong Zhang value = v[l + k * n]; 1503d4002b98SHong Zhang } else { 1504d4002b98SHong Zhang value = v[k + l * m]; 1505d4002b98SHong Zhang } 1506d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue; 1507d4002b98SHong Zhang 1508ed73aabaSBarry Smith /* search in this row for the specified column, i indicates the column to be set */ 1509d4002b98SHong Zhang if (col <= lastcol) low = 0; 1510d4002b98SHong Zhang else high = nrow; 1511d4002b98SHong Zhang lastcol = col; 1512d4002b98SHong Zhang while (high - low > 5) { 1513d4002b98SHong Zhang t = (low + high) / 2; 1514d4002b98SHong Zhang if (*(cp + t * 8) > col) high = t; 1515d4002b98SHong Zhang else low = t; 1516d4002b98SHong Zhang } 1517d4002b98SHong Zhang for (i = low; i < high; i++) { 1518d4002b98SHong Zhang if (*(cp + i * 8) > col) break; 1519d4002b98SHong Zhang if (*(cp + i * 8) == col) { 1520d4002b98SHong Zhang if (is == ADD_VALUES) *(vp + i * 8) += value; 1521d4002b98SHong Zhang else *(vp + i * 8) = value; 1522d4002b98SHong Zhang low = i + 1; 1523d4002b98SHong Zhang goto noinsert; 1524d4002b98SHong Zhang } 1525d4002b98SHong Zhang } 1526d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert; 1527d4002b98SHong Zhang if (nonew == 1) goto noinsert; 152808401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 1529d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */ 1530d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, row / 8, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar); 1531d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */ 1532d4002b98SHong Zhang for (ii = nrow - 1; ii >= i; ii--) { 1533d4002b98SHong Zhang *(cp + (ii + 1) * 8) = *(cp + ii * 8); 1534d4002b98SHong Zhang *(vp + (ii + 1) * 8) = *(vp + ii * 8); 1535d4002b98SHong Zhang } 1536d4002b98SHong Zhang a->rlen[row]++; 1537d4002b98SHong Zhang *(cp + i * 8) = col; 1538d4002b98SHong Zhang *(vp + i * 8) = value; 1539d4002b98SHong Zhang a->nz++; 1540d4002b98SHong Zhang A->nonzerostate++; 15419371c9d4SSatish Balay low = i + 1; 15429371c9d4SSatish Balay high++; 15439371c9d4SSatish Balay nrow++; 1544d4002b98SHong Zhang noinsert:; 1545d4002b98SHong Zhang } 1546d4002b98SHong Zhang a->rlen[row] = nrow; 1547d4002b98SHong Zhang } 1548d4002b98SHong Zhang PetscFunctionReturn(0); 1549d4002b98SHong Zhang } 1550d4002b98SHong Zhang 1551d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_SeqSELL(Mat A, Mat B, MatStructure str) 1552d71ae5a4SJacob Faibussowitsch { 1553d4002b98SHong Zhang PetscFunctionBegin; 1554d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 1555d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 1556d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1557d4002b98SHong Zhang Mat_SeqSELL *b = (Mat_SeqSELL *)B->data; 1558d4002b98SHong Zhang 155908401ef6SPierre Jolivet PetscCheck(a->sliidx[a->totalslices] == b->sliidx[b->totalslices], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzeros in two matrices are different"); 15609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->val, a->val, a->sliidx[a->totalslices])); 1561d4002b98SHong Zhang } else { 15629566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 1563d4002b98SHong Zhang } 1564d4002b98SHong Zhang PetscFunctionReturn(0); 1565d4002b98SHong Zhang } 1566d4002b98SHong Zhang 1567d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_SeqSELL(Mat A) 1568d71ae5a4SJacob Faibussowitsch { 1569d4002b98SHong Zhang PetscFunctionBegin; 15709566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(A, PETSC_DEFAULT, NULL)); 1571d4002b98SHong Zhang PetscFunctionReturn(0); 1572d4002b98SHong Zhang } 1573d4002b98SHong Zhang 1574d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A, PetscScalar *array[]) 1575d71ae5a4SJacob Faibussowitsch { 1576d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1577d4002b98SHong Zhang 1578d4002b98SHong Zhang PetscFunctionBegin; 1579d4002b98SHong Zhang *array = a->val; 1580d4002b98SHong Zhang PetscFunctionReturn(0); 1581d4002b98SHong Zhang } 1582d4002b98SHong Zhang 1583d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A, PetscScalar *array[]) 1584d71ae5a4SJacob Faibussowitsch { 1585d4002b98SHong Zhang PetscFunctionBegin; 1586d4002b98SHong Zhang PetscFunctionReturn(0); 1587d4002b98SHong Zhang } 1588d4002b98SHong Zhang 1589d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_SeqSELL(Mat A) 1590d71ae5a4SJacob Faibussowitsch { 1591d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1592d4002b98SHong Zhang PetscInt i; 1593d4002b98SHong Zhang MatScalar *aval = a->val; 1594d4002b98SHong Zhang 1595d4002b98SHong Zhang PetscFunctionBegin; 1596d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) aval[i] = PetscRealPart(aval[i]); 1597d4002b98SHong Zhang PetscFunctionReturn(0); 1598d4002b98SHong Zhang } 1599d4002b98SHong Zhang 1600d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_SeqSELL(Mat A) 1601d71ae5a4SJacob Faibussowitsch { 1602d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1603d4002b98SHong Zhang PetscInt i; 1604d4002b98SHong Zhang MatScalar *aval = a->val; 1605d4002b98SHong Zhang 1606d4002b98SHong Zhang PetscFunctionBegin; 1607d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]); 16089566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 1609d4002b98SHong Zhang PetscFunctionReturn(0); 1610d4002b98SHong Zhang } 1611d4002b98SHong Zhang 1612d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_SeqSELL(Mat inA, PetscScalar alpha) 1613d71ae5a4SJacob Faibussowitsch { 1614d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)inA->data; 1615d4002b98SHong Zhang MatScalar *aval = a->val; 1616d4002b98SHong Zhang PetscScalar oalpha = alpha; 1617d4002b98SHong Zhang PetscBLASInt one = 1, size; 1618d4002b98SHong Zhang 1619d4002b98SHong Zhang PetscFunctionBegin; 16209566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(a->sliidx[a->totalslices], &size)); 1621792fecdfSBarry Smith PetscCallBLAS("BLASscal", BLASscal_(&size, &oalpha, aval, &one)); 16229566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 16239566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(inA)); 1624d4002b98SHong Zhang PetscFunctionReturn(0); 1625d4002b98SHong Zhang } 1626d4002b98SHong Zhang 1627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_SeqSELL(Mat Y, PetscScalar a) 1628d71ae5a4SJacob Faibussowitsch { 1629d4002b98SHong Zhang Mat_SeqSELL *y = (Mat_SeqSELL *)Y->data; 1630d4002b98SHong Zhang 1631d4002b98SHong Zhang PetscFunctionBegin; 163248a46eb9SPierre Jolivet if (!Y->preallocated || !y->nz) PetscCall(MatSeqSELLSetPreallocation(Y, 1, NULL)); 16339566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 1634d4002b98SHong Zhang PetscFunctionReturn(0); 1635d4002b98SHong Zhang } 1636d4002b98SHong Zhang 1637d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_SeqSELL(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1638d71ae5a4SJacob Faibussowitsch { 1639d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1640d4002b98SHong Zhang PetscScalar *x, sum, *t; 1641f4259b30SLisandro Dalcin const MatScalar *idiag = NULL, *mdiag; 1642d4002b98SHong Zhang const PetscScalar *b, *xb; 1643d4002b98SHong Zhang PetscInt n, m = A->rmap->n, i, j, shift; 1644d4002b98SHong Zhang const PetscInt *diag; 1645d4002b98SHong Zhang 1646d4002b98SHong Zhang PetscFunctionBegin; 1647d4002b98SHong Zhang its = its * lits; 1648d4002b98SHong Zhang 1649d4002b98SHong Zhang if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */ 16509566063dSJacob Faibussowitsch if (!a->idiagvalid) PetscCall(MatInvertDiagonal_SeqSELL(A, omega, fshift)); 1651d4002b98SHong Zhang a->fshift = fshift; 1652d4002b98SHong Zhang a->omega = omega; 1653d4002b98SHong Zhang 1654d4002b98SHong Zhang diag = a->diag; 1655d4002b98SHong Zhang t = a->ssor_work; 1656d4002b98SHong Zhang idiag = a->idiag; 1657d4002b98SHong Zhang mdiag = a->mdiag; 1658d4002b98SHong Zhang 16599566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 16609566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 1661d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */ 166208401ef6SPierre Jolivet PetscCheck(flag != SOR_APPLY_UPPER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_UPPER is not implemented"); 166308401ef6SPierre Jolivet PetscCheck(flag != SOR_APPLY_LOWER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_LOWER is not implemented"); 1664aed4548fSBarry Smith PetscCheck(!(flag & SOR_EISENSTAT), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support yet for Eisenstat"); 1665d4002b98SHong Zhang 1666d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 1667d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1668d4002b98SHong Zhang for (i = 0; i < m; i++) { 1669d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); /* starting index of the row i */ 1670d4002b98SHong Zhang sum = b[i]; 1671d4002b98SHong Zhang n = (diag[i] - shift) / 8; 1672d4002b98SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + j * 8] * x[a->colidx[shift + j * 8]]; 1673d4002b98SHong Zhang t[i] = sum; 1674d4002b98SHong Zhang x[i] = sum * idiag[i]; 1675d4002b98SHong Zhang } 1676d4002b98SHong Zhang xb = t; 16779566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 1678d4002b98SHong Zhang } else xb = b; 1679d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1680d4002b98SHong Zhang for (i = m - 1; i >= 0; i--) { 1681d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); /* starting index of the row i */ 1682d4002b98SHong Zhang sum = xb[i]; 1683d4002b98SHong Zhang n = a->rlen[i] - (diag[i] - shift) / 8 - 1; 1684d4002b98SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + j * 8] * x[a->colidx[diag[i] + j * 8]]; 1685d4002b98SHong Zhang if (xb == b) { 1686d4002b98SHong Zhang x[i] = sum * idiag[i]; 1687d4002b98SHong Zhang } else { 1688d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */ 1689d4002b98SHong Zhang } 1690d4002b98SHong Zhang } 16919566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */ 1692d4002b98SHong Zhang } 1693d4002b98SHong Zhang its--; 1694d4002b98SHong Zhang } 1695d4002b98SHong Zhang while (its--) { 1696d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1697d4002b98SHong Zhang for (i = 0; i < m; i++) { 1698d4002b98SHong Zhang /* lower */ 1699d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); /* starting index of the row i */ 1700d4002b98SHong Zhang sum = b[i]; 1701d4002b98SHong Zhang n = (diag[i] - shift) / 8; 1702d4002b98SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + j * 8] * x[a->colidx[shift + j * 8]]; 1703d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */ 1704d4002b98SHong Zhang /* upper */ 1705d4002b98SHong Zhang n = a->rlen[i] - (diag[i] - shift) / 8 - 1; 1706d4002b98SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + j * 8] * x[a->colidx[diag[i] + j * 8]]; 1707d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */ 1708d4002b98SHong Zhang } 1709d4002b98SHong Zhang xb = t; 17109566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz)); 1711d4002b98SHong Zhang } else xb = b; 1712d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1713d4002b98SHong Zhang for (i = m - 1; i >= 0; i--) { 1714d4002b98SHong Zhang shift = a->sliidx[i >> 3] + (i & 0x07); /* starting index of the row i */ 1715d4002b98SHong Zhang sum = xb[i]; 1716d4002b98SHong Zhang if (xb == b) { 1717d4002b98SHong Zhang /* whole matrix (no checkpointing available) */ 1718d4002b98SHong Zhang n = a->rlen[i]; 1719d4002b98SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + j * 8] * x[a->colidx[shift + j * 8]]; 1720d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + (sum + mdiag[i] * x[i]) * idiag[i]; 1721d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */ 1722d4002b98SHong Zhang n = a->rlen[i] - (diag[i] - shift) / 8 - 1; 1723d4002b98SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + j * 8] * x[a->colidx[diag[i] + j * 8]]; 1724d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */ 1725d4002b98SHong Zhang } 1726d4002b98SHong Zhang } 1727d4002b98SHong Zhang if (xb == b) { 17289566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz)); 1729d4002b98SHong Zhang } else { 17309566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */ 1731d4002b98SHong Zhang } 1732d4002b98SHong Zhang } 1733d4002b98SHong Zhang } 17349566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 17359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 1736d4002b98SHong Zhang PetscFunctionReturn(0); 1737d4002b98SHong Zhang } 1738d4002b98SHong Zhang 1739d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 1740d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL, 17416108893eSStefano Zampini MatGetRow_SeqSELL, 17426108893eSStefano Zampini MatRestoreRow_SeqSELL, 1743d4002b98SHong Zhang MatMult_SeqSELL, 1744d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL, 1745d4002b98SHong Zhang MatMultTranspose_SeqSELL, 1746d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL, 1747f4259b30SLisandro Dalcin NULL, 1748f4259b30SLisandro Dalcin NULL, 1749f4259b30SLisandro Dalcin NULL, 1750f4259b30SLisandro Dalcin /* 10*/ NULL, 1751f4259b30SLisandro Dalcin NULL, 1752f4259b30SLisandro Dalcin NULL, 1753d4002b98SHong Zhang MatSOR_SeqSELL, 1754f4259b30SLisandro Dalcin NULL, 1755d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL, 1756d4002b98SHong Zhang MatEqual_SeqSELL, 1757d4002b98SHong Zhang MatGetDiagonal_SeqSELL, 1758d4002b98SHong Zhang MatDiagonalScale_SeqSELL, 1759f4259b30SLisandro Dalcin NULL, 1760f4259b30SLisandro Dalcin /* 20*/ NULL, 1761d4002b98SHong Zhang MatAssemblyEnd_SeqSELL, 1762d4002b98SHong Zhang MatSetOption_SeqSELL, 1763d4002b98SHong Zhang MatZeroEntries_SeqSELL, 1764f4259b30SLisandro Dalcin /* 24*/ NULL, 1765f4259b30SLisandro Dalcin NULL, 1766f4259b30SLisandro Dalcin NULL, 1767f4259b30SLisandro Dalcin NULL, 1768f4259b30SLisandro Dalcin NULL, 1769d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL, 1770f4259b30SLisandro Dalcin NULL, 1771f4259b30SLisandro Dalcin NULL, 1772f4259b30SLisandro Dalcin NULL, 1773f4259b30SLisandro Dalcin NULL, 1774d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL, 1775f4259b30SLisandro Dalcin NULL, 1776f4259b30SLisandro Dalcin NULL, 1777f4259b30SLisandro Dalcin NULL, 1778f4259b30SLisandro Dalcin NULL, 1779f4259b30SLisandro Dalcin /* 39*/ NULL, 1780f4259b30SLisandro Dalcin NULL, 1781f4259b30SLisandro Dalcin NULL, 1782d4002b98SHong Zhang MatGetValues_SeqSELL, 1783d4002b98SHong Zhang MatCopy_SeqSELL, 1784f4259b30SLisandro Dalcin /* 44*/ NULL, 1785d4002b98SHong Zhang MatScale_SeqSELL, 1786d4002b98SHong Zhang MatShift_SeqSELL, 1787f4259b30SLisandro Dalcin NULL, 1788f4259b30SLisandro Dalcin NULL, 1789f4259b30SLisandro Dalcin /* 49*/ NULL, 1790f4259b30SLisandro Dalcin NULL, 1791f4259b30SLisandro Dalcin NULL, 1792f4259b30SLisandro Dalcin NULL, 1793f4259b30SLisandro Dalcin NULL, 1794d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 1795f4259b30SLisandro Dalcin NULL, 1796f4259b30SLisandro Dalcin NULL, 1797f4259b30SLisandro Dalcin NULL, 1798f4259b30SLisandro Dalcin NULL, 1799f4259b30SLisandro Dalcin /* 59*/ NULL, 1800d4002b98SHong Zhang MatDestroy_SeqSELL, 1801d4002b98SHong Zhang MatView_SeqSELL, 1802f4259b30SLisandro Dalcin NULL, 1803f4259b30SLisandro Dalcin NULL, 1804f4259b30SLisandro Dalcin /* 64*/ NULL, 1805f4259b30SLisandro Dalcin NULL, 1806f4259b30SLisandro Dalcin NULL, 1807f4259b30SLisandro Dalcin NULL, 1808f4259b30SLisandro Dalcin NULL, 1809f4259b30SLisandro Dalcin /* 69*/ NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin NULL, 1814f4259b30SLisandro Dalcin /* 74*/ NULL, 1815d4002b98SHong Zhang MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */ 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin /* 79*/ NULL, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin NULL, 1823f4259b30SLisandro Dalcin NULL, 1824f4259b30SLisandro Dalcin /* 84*/ NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin NULL, 1829f4259b30SLisandro Dalcin /* 89*/ NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin NULL, 1834f4259b30SLisandro Dalcin /* 94*/ NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin NULL, 1839f4259b30SLisandro Dalcin /* 99*/ NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842d4002b98SHong Zhang MatConjugate_SeqSELL, 1843f4259b30SLisandro Dalcin NULL, 1844f4259b30SLisandro Dalcin /*104*/ NULL, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin NULL, 1849f4259b30SLisandro Dalcin /*109*/ NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853d4002b98SHong Zhang MatMissingDiagonal_SeqSELL, 1854f4259b30SLisandro Dalcin /*114*/ NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin NULL, 1859f4259b30SLisandro Dalcin /*119*/ NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin NULL, 1864f4259b30SLisandro Dalcin /*124*/ NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin NULL, 1869f4259b30SLisandro Dalcin /*129*/ NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin NULL, 1874f4259b30SLisandro Dalcin /*134*/ NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin NULL, 1879f4259b30SLisandro Dalcin /*139*/ NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 1882d4002b98SHong Zhang MatFDColoringSetUp_SeqXAIJ, 1883f4259b30SLisandro Dalcin NULL, 1884d70f29a3SPierre Jolivet /*144*/ NULL, 1885d70f29a3SPierre Jolivet NULL, 1886d70f29a3SPierre Jolivet NULL, 188799a7f59eSMark Adams NULL, 188899a7f59eSMark Adams NULL, 18897fb60732SBarry Smith NULL, 1890*dec0b466SHong Zhang /*150*/ NULL, 1891*dec0b466SHong Zhang NULL}; 1892d4002b98SHong Zhang 1893d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_SeqSELL(Mat mat) 1894d71ae5a4SJacob Faibussowitsch { 1895d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 1896d4002b98SHong Zhang 1897d4002b98SHong Zhang PetscFunctionBegin; 189828b400f6SJacob Faibussowitsch PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1899d4002b98SHong Zhang 1900d4002b98SHong Zhang /* allocate space for values if not already there */ 19014dfa11a4SJacob Faibussowitsch if (!a->saved_values) { PetscCall(PetscMalloc1(a->sliidx[a->totalslices] + 1, &a->saved_values)); } 1902d4002b98SHong Zhang 1903d4002b98SHong Zhang /* copy values over */ 19049566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->saved_values, a->val, a->sliidx[a->totalslices])); 1905d4002b98SHong Zhang PetscFunctionReturn(0); 1906d4002b98SHong Zhang } 1907d4002b98SHong Zhang 1908d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat) 1909d71ae5a4SJacob Faibussowitsch { 1910d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 1911d4002b98SHong Zhang 1912d4002b98SHong Zhang PetscFunctionBegin; 191328b400f6SJacob Faibussowitsch PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 191428b400f6SJacob Faibussowitsch PetscCheck(a->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first"); 19159566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->val, a->saved_values, a->sliidx[a->totalslices])); 1916d4002b98SHong Zhang PetscFunctionReturn(0); 1917d4002b98SHong Zhang } 1918d4002b98SHong Zhang 1919d4002b98SHong Zhang /*@C 192011a5261eSBarry Smith MatSeqSELLRestoreArray - returns access to the array where the data for a `MATSEQSELL` matrix is stored obtained by `MatSeqSELLGetArray()` 1921d4002b98SHong Zhang 1922d4002b98SHong Zhang Not Collective 1923d4002b98SHong Zhang 1924d4002b98SHong Zhang Input Parameters: 192511a5261eSBarry Smith . mat - a `MATSEQSELL` matrix 1926d4002b98SHong Zhang . array - pointer to the data 1927d4002b98SHong Zhang 1928d4002b98SHong Zhang Level: intermediate 1929d4002b98SHong Zhang 193011a5261eSBarry Smith .seealso: `MATSEQSELL`, `MatSeqSELLGetArray()`, `MatSeqSELLRestoreArrayF90()` 1931d4002b98SHong Zhang @*/ 1932d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray(Mat A, PetscScalar **array) 1933d71ae5a4SJacob Faibussowitsch { 1934d4002b98SHong Zhang PetscFunctionBegin; 1935cac4c232SBarry Smith PetscUseMethod(A, "MatSeqSELLRestoreArray_C", (Mat, PetscScalar **), (A, array)); 1936d4002b98SHong Zhang PetscFunctionReturn(0); 1937d4002b98SHong Zhang } 1938d4002b98SHong Zhang 1939d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B) 1940d71ae5a4SJacob Faibussowitsch { 1941d4002b98SHong Zhang Mat_SeqSELL *b; 1942d4002b98SHong Zhang PetscMPIInt size; 1943d4002b98SHong Zhang 1944d4002b98SHong Zhang PetscFunctionBegin; 19459566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(citation, &cited)); 19469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 194708401ef6SPierre Jolivet PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Comm must be of size 1"); 1948d4002b98SHong Zhang 19494dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 1950d4002b98SHong Zhang 1951d4002b98SHong Zhang B->data = (void *)b; 1952d4002b98SHong Zhang 19539566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps))); 1954d4002b98SHong Zhang 1955f4259b30SLisandro Dalcin b->row = NULL; 1956f4259b30SLisandro Dalcin b->col = NULL; 1957f4259b30SLisandro Dalcin b->icol = NULL; 1958d4002b98SHong Zhang b->reallocs = 0; 1959d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE; 1960d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1961d4002b98SHong Zhang b->nonew = 0; 1962f4259b30SLisandro Dalcin b->diag = NULL; 1963f4259b30SLisandro Dalcin b->solve_work = NULL; 1964f4259b30SLisandro Dalcin B->spptr = NULL; 1965f4259b30SLisandro Dalcin b->saved_values = NULL; 1966f4259b30SLisandro Dalcin b->idiag = NULL; 1967f4259b30SLisandro Dalcin b->mdiag = NULL; 1968f4259b30SLisandro Dalcin b->ssor_work = NULL; 1969d4002b98SHong Zhang b->omega = 1.0; 1970d4002b98SHong Zhang b->fshift = 0.0; 1971d4002b98SHong Zhang b->idiagvalid = PETSC_FALSE; 1972d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE; 1973d4002b98SHong Zhang 19749566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQSELL)); 19759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetArray_C", MatSeqSELLGetArray_SeqSELL)); 19769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLRestoreArray_C", MatSeqSELLRestoreArray_SeqSELL)); 19779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqSELL)); 19789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqSELL)); 19799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetPreallocation_C", MatSeqSELLSetPreallocation_SeqSELL)); 19809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqaij_C", MatConvert_SeqSELL_SeqAIJ)); 1981d4002b98SHong Zhang PetscFunctionReturn(0); 1982d4002b98SHong Zhang } 1983d4002b98SHong Zhang 1984d4002b98SHong Zhang /* 1985d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B 1986d4002b98SHong Zhang */ 1987d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C, Mat A, MatDuplicateOption cpvalues, PetscBool mallocmatspace) 1988d71ae5a4SJacob Faibussowitsch { 1989ed73aabaSBarry Smith Mat_SeqSELL *c = (Mat_SeqSELL *)C->data, *a = (Mat_SeqSELL *)A->data; 1990d4002b98SHong Zhang PetscInt i, m = A->rmap->n; 1991d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 1992d4002b98SHong Zhang 1993d4002b98SHong Zhang PetscFunctionBegin; 1994d4002b98SHong Zhang C->factortype = A->factortype; 1995f4259b30SLisandro Dalcin c->row = NULL; 1996f4259b30SLisandro Dalcin c->col = NULL; 1997f4259b30SLisandro Dalcin c->icol = NULL; 1998d4002b98SHong Zhang c->reallocs = 0; 1999d4002b98SHong Zhang C->assembled = PETSC_TRUE; 2000d4002b98SHong Zhang 20019566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &C->rmap)); 20029566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &C->cmap)); 2003d4002b98SHong Zhang 20049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(8 * totalslices, &c->rlen)); 20059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totalslices + 1, &c->sliidx)); 2006d4002b98SHong Zhang 2007d4002b98SHong Zhang for (i = 0; i < m; i++) c->rlen[i] = a->rlen[i]; 2008d4002b98SHong Zhang for (i = 0; i < totalslices + 1; i++) c->sliidx[i] = a->sliidx[i]; 2009d4002b98SHong Zhang 2010d4002b98SHong Zhang /* allocate the matrix space */ 2011d4002b98SHong Zhang if (mallocmatspace) { 20129566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(a->maxallocmat, &c->val, a->maxallocmat, &c->colidx)); 2013d4002b98SHong Zhang 2014d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE; 2015d4002b98SHong Zhang 2016d4002b98SHong Zhang if (m > 0) { 20179566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->colidx, a->colidx, a->maxallocmat)); 2018d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) { 20199566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->val, a->val, a->maxallocmat)); 2020d4002b98SHong Zhang } else { 20219566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(c->val, a->maxallocmat)); 2022d4002b98SHong Zhang } 2023d4002b98SHong Zhang } 2024d4002b98SHong Zhang } 2025d4002b98SHong Zhang 2026d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries; 2027d4002b98SHong Zhang c->roworiented = a->roworiented; 2028d4002b98SHong Zhang c->nonew = a->nonew; 2029d4002b98SHong Zhang if (a->diag) { 20309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &c->diag)); 2031ad540459SPierre Jolivet for (i = 0; i < m; i++) c->diag[i] = a->diag[i]; 2032f4259b30SLisandro Dalcin } else c->diag = NULL; 2033d4002b98SHong Zhang 2034f4259b30SLisandro Dalcin c->solve_work = NULL; 2035f4259b30SLisandro Dalcin c->saved_values = NULL; 2036f4259b30SLisandro Dalcin c->idiag = NULL; 2037f4259b30SLisandro Dalcin c->ssor_work = NULL; 2038d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern; 2039d4002b98SHong Zhang c->free_val = PETSC_TRUE; 2040d4002b98SHong Zhang c->free_colidx = PETSC_TRUE; 2041d4002b98SHong Zhang 2042d4002b98SHong Zhang c->maxallocmat = a->maxallocmat; 2043d4002b98SHong Zhang c->maxallocrow = a->maxallocrow; 2044d4002b98SHong Zhang c->rlenmax = a->rlenmax; 2045d4002b98SHong Zhang c->nz = a->nz; 2046d4002b98SHong Zhang C->preallocated = PETSC_TRUE; 2047d4002b98SHong Zhang 2048d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt; 2049d4002b98SHong Zhang C->nonzerostate = A->nonzerostate; 2050d4002b98SHong Zhang 20519566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist)); 2052d4002b98SHong Zhang PetscFunctionReturn(0); 2053d4002b98SHong Zhang } 2054d4002b98SHong Zhang 2055d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqSELL(Mat A, MatDuplicateOption cpvalues, Mat *B) 2056d71ae5a4SJacob Faibussowitsch { 2057d4002b98SHong Zhang PetscFunctionBegin; 20589566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B)); 20599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n)); 206048a46eb9SPierre Jolivet if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) PetscCall(MatSetBlockSizesFromMats(*B, A, A)); 20619566063dSJacob Faibussowitsch PetscCall(MatSetType(*B, ((PetscObject)A)->type_name)); 20629566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqSELL(*B, A, cpvalues, PETSC_TRUE)); 2063d4002b98SHong Zhang PetscFunctionReturn(0); 2064d4002b98SHong Zhang } 2065d4002b98SHong Zhang 2066ed73aabaSBarry Smith /*MC 2067ed73aabaSBarry Smith MATSEQSELL - MATSEQSELL = "seqsell" - A matrix type to be used for sequential sparse matrices, 2068ed73aabaSBarry Smith based on the sliced Ellpack format 2069ed73aabaSBarry Smith 2070ed73aabaSBarry Smith Options Database Keys: 207111a5261eSBarry Smith . -mat_type seqsell - sets the matrix type to "`MATSEQELL` during a call to `MatSetFromOptions()` 2072ed73aabaSBarry Smith 2073ed73aabaSBarry Smith Level: beginner 2074ed73aabaSBarry Smith 2075db781477SPatrick Sanan .seealso: `MatCreateSeqSell()`, `MATSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ` 2076ed73aabaSBarry Smith M*/ 2077ed73aabaSBarry Smith 2078ed73aabaSBarry Smith /*MC 2079ed73aabaSBarry Smith MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 2080ed73aabaSBarry Smith 208111a5261eSBarry Smith This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator, 208211a5261eSBarry Smith and `MATMPISELL` otherwise. As a result, for single process communicators, 208311a5261eSBarry Smith `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported 2084ed73aabaSBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 2085ed73aabaSBarry Smith the above preallocation routines for simplicity. 2086ed73aabaSBarry Smith 2087ed73aabaSBarry Smith Options Database Keys: 2088ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions() 2089ed73aabaSBarry Smith 2090ed73aabaSBarry Smith Level: beginner 2091ed73aabaSBarry Smith 2092ed73aabaSBarry Smith Notes: 2093ed73aabaSBarry Smith This format is only supported for real scalars, double precision, and 32 bit indices (the defaults). 2094ed73aabaSBarry Smith 2095ed73aabaSBarry Smith It can provide better performance on Intel and AMD processes with AVX2 or AVX512 support for matrices that have a similar number of 2096ed73aabaSBarry Smith non-zeros in contiguous groups of rows. However if the computation is memory bandwidth limited it may not provide much improvement. 2097ed73aabaSBarry Smith 2098ed73aabaSBarry Smith Developer Notes: 2099ed73aabaSBarry Smith On Intel (and AMD) systems some of the matrix operations use SIMD (AVX) instructions to achieve higher performance. 2100ed73aabaSBarry Smith 2101ed73aabaSBarry Smith The sparse matrix format is as follows. For simplicity we assume a slice size of 2, it is actually 8 2102ed73aabaSBarry Smith .vb 2103ed73aabaSBarry Smith (2 0 3 4) 2104ed73aabaSBarry Smith Consider the matrix A = (5 0 6 0) 2105ed73aabaSBarry Smith (0 0 7 8) 2106ed73aabaSBarry Smith (0 0 9 9) 2107ed73aabaSBarry Smith 2108ed73aabaSBarry Smith symbolically the Ellpack format can be written as 2109ed73aabaSBarry Smith 2110ed73aabaSBarry Smith (2 3 4 |) (0 2 3 |) 2111ed73aabaSBarry Smith v = (5 6 0 |) colidx = (0 2 2 |) 2112ed73aabaSBarry Smith -------- --------- 2113ed73aabaSBarry Smith (7 8 |) (2 3 |) 2114ed73aabaSBarry Smith (9 9 |) (2 3 |) 2115ed73aabaSBarry Smith 2116ed73aabaSBarry Smith The data for 2 contiguous rows of the matrix are stored together (in column-major format) (with any left-over rows handled as a special case). 2117ed73aabaSBarry Smith Any of the rows in a slice fewer columns than the rest of the slice (row 1 above) are padded with a previous valid column in their "extra" colidx[] locations and 2118ed73aabaSBarry Smith zeros in their "extra" v locations so that the matrix operations do not need special code to handle different length rows within the 2 rows in a slice. 2119ed73aabaSBarry Smith 2120ed73aabaSBarry Smith The one-dimensional representation of v used in the code is (2 5 3 6 4 0 7 9 8 9) and for colidx is (0 0 2 2 3 2 2 2 3 3) 2121ed73aabaSBarry Smith 2122ed73aabaSBarry Smith .ve 2123ed73aabaSBarry Smith 2124ed73aabaSBarry Smith See MatMult_SeqSELL() for how this format is used with the SIMD operations to achieve high performance. 2125ed73aabaSBarry Smith 2126ed73aabaSBarry Smith References: 2127606c0280SSatish Balay . * - Hong Zhang, Richard T. Mills, Karl Rupp, and Barry F. Smith, Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}, 2128ed73aabaSBarry Smith Proceedings of the 47th International Conference on Parallel Processing, 2018. 2129ed73aabaSBarry Smith 2130db781477SPatrick Sanan .seealso: `MatCreateSeqSELL()`, `MatCreateSeqAIJ()`, `MatCreateSell()`, `MATSEQSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATMPIAIJ`, `MATAIJ` 2131ed73aabaSBarry Smith M*/ 2132ed73aabaSBarry Smith 2133d4002b98SHong Zhang /*@C 213411a5261eSBarry Smith MatCreateSeqSELL - Creates a sparse matrix in `MATSEQSELL` format. 2135d4002b98SHong Zhang 2136ed73aabaSBarry Smith Collective on comm 2137d4002b98SHong Zhang 2138d4002b98SHong Zhang Input Parameters: 213911a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 2140d4002b98SHong Zhang . m - number of rows 2141d4002b98SHong Zhang . n - number of columns 2142d4002b98SHong Zhang . rlenmax - maximum number of nonzeros in a row 2143d4002b98SHong Zhang - rlen - array containing the number of nonzeros in the various rows 2144d4002b98SHong Zhang (possibly different for each row) or NULL 2145d4002b98SHong Zhang 2146d4002b98SHong Zhang Output Parameter: 2147d4002b98SHong Zhang . A - the matrix 2148d4002b98SHong Zhang 214911a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2150f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 215111a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`] 2152d4002b98SHong Zhang 2153d4002b98SHong Zhang Notes: 2154d4002b98SHong Zhang If nnz is given then nz is ignored 2155d4002b98SHong Zhang 2156d4002b98SHong Zhang Specify the preallocated storage with either rlenmax or rlen (not both). 215711a5261eSBarry Smith Set rlenmax = `PETSC_DEFAULT` and rlen = NULL for PETSc to control dynamic memory 2158d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 2159d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 2160d4002b98SHong Zhang 2161d4002b98SHong Zhang Level: intermediate 2162d4002b98SHong Zhang 216311a5261eSBarry Smith .seealso: `MATSEQSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatSeqSELLSetPreallocation()`, `MATSELL`, `MATSEQSELL`, `MATMPISELL` 2164d4002b98SHong Zhang @*/ 2165d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSeqSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt maxallocrow, const PetscInt rlen[], Mat *A) 2166d71ae5a4SJacob Faibussowitsch { 2167d4002b98SHong Zhang PetscFunctionBegin; 21689566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 21699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, m, n)); 21709566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSELL)); 21719566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation_SeqSELL(*A, maxallocrow, rlen)); 2172d4002b98SHong Zhang PetscFunctionReturn(0); 2173d4002b98SHong Zhang } 2174d4002b98SHong Zhang 2175d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_SeqSELL(Mat A, Mat B, PetscBool *flg) 2176d71ae5a4SJacob Faibussowitsch { 2177d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data, *b = (Mat_SeqSELL *)B->data; 2178d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 2179d4002b98SHong Zhang 2180d4002b98SHong Zhang PetscFunctionBegin; 2181d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */ 2182d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) || (a->nz != b->nz) || (a->rlenmax != b->rlenmax)) { 2183d4002b98SHong Zhang *flg = PETSC_FALSE; 2184d4002b98SHong Zhang PetscFunctionReturn(0); 2185d4002b98SHong Zhang } 2186d4002b98SHong Zhang /* if the a->colidx are the same */ 21879566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(a->colidx, b->colidx, a->sliidx[totalslices], flg)); 2188d4002b98SHong Zhang if (!*flg) PetscFunctionReturn(0); 2189d4002b98SHong Zhang /* if a->val are the same */ 21909566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(a->val, b->val, a->sliidx[totalslices], flg)); 2191d4002b98SHong Zhang PetscFunctionReturn(0); 2192d4002b98SHong Zhang } 2193d4002b98SHong Zhang 2194d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A) 2195d71ae5a4SJacob Faibussowitsch { 2196d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 2197d4002b98SHong Zhang 2198d4002b98SHong Zhang PetscFunctionBegin; 2199d4002b98SHong Zhang a->idiagvalid = PETSC_FALSE; 2200d4002b98SHong Zhang PetscFunctionReturn(0); 2201d4002b98SHong Zhang } 2202d4002b98SHong Zhang 2203d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_SeqSELL(Mat A) 2204d71ae5a4SJacob Faibussowitsch { 2205d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 2206d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 2207d4002b98SHong Zhang PetscInt i; 2208d4002b98SHong Zhang PetscScalar *val = a->val; 2209d4002b98SHong Zhang 2210d4002b98SHong Zhang PetscFunctionBegin; 2211ad540459SPierre Jolivet for (i = 0; i < a->sliidx[a->totalslices]; i++) val[i] = PetscConj(val[i]); 2212d4002b98SHong Zhang #else 2213d4002b98SHong Zhang PetscFunctionBegin; 2214d4002b98SHong Zhang #endif 2215d4002b98SHong Zhang PetscFunctionReturn(0); 2216d4002b98SHong Zhang } 2217