1af0996ceSBarry Smith #include <petsc/private/matimpl.h> /*I "petscmat.h" I*/ 27807a1faSBarry Smith 39371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatSetBlockSizes_Default(Mat mat, PetscInt rbs, PetscInt cbs) { 446533700Sstefano_zampini PetscFunctionBegin; 55c577a9aSstefano_zampini if (!mat->preallocated) PetscFunctionReturn(0); 6aed4548fSBarry Smith PetscCheck(mat->rmap->bs <= 0 || mat->rmap->bs == rbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Cannot change row block size %" PetscInt_FMT " to %" PetscInt_FMT, mat->rmap->bs, rbs); 7aed4548fSBarry Smith PetscCheck(mat->cmap->bs <= 0 || mat->cmap->bs == cbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Cannot change column block size %" PetscInt_FMT " to %" PetscInt_FMT, mat->cmap->bs, cbs); 846533700Sstefano_zampini PetscFunctionReturn(0); 946533700Sstefano_zampini } 1046533700Sstefano_zampini 119371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatShift_Basic(Mat Y, PetscScalar a) { 127d68702bSBarry Smith PetscInt i, start, end; 137d68702bSBarry Smith PetscScalar alpha = a; 147d68702bSBarry Smith PetscBool prevoption; 157d68702bSBarry Smith 167d68702bSBarry Smith PetscFunctionBegin; 179566063dSJacob Faibussowitsch PetscCall(MatGetOption(Y, MAT_NO_OFF_PROC_ENTRIES, &prevoption)); 189566063dSJacob Faibussowitsch PetscCall(MatSetOption(Y, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 199566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Y, &start, &end)); 207d68702bSBarry Smith for (i = start; i < end; i++) { 2148a46eb9SPierre Jolivet if (i < Y->cmap->N) PetscCall(MatSetValues(Y, 1, &i, 1, &i, &alpha, ADD_VALUES)); 22ab6153dcSStefano Zampini } 239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Y, MAT_FINAL_ASSEMBLY)); 249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Y, MAT_FINAL_ASSEMBLY)); 259566063dSJacob Faibussowitsch PetscCall(MatSetOption(Y, MAT_NO_OFF_PROC_ENTRIES, prevoption)); 267d68702bSBarry Smith PetscFunctionReturn(0); 277d68702bSBarry Smith } 287d68702bSBarry Smith 2905869f15SSatish Balay /*@ 3069dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 31*11a5261eSBarry Smith from either a call to `MatSetType()` or from the options database 32*11a5261eSBarry Smith with a call to `MatSetFromOptions()`. The default matrix type is 33*11a5261eSBarry Smith `MATAIJ`, using the routines `MatCreateSeqAIJ()` or `MatCreateAIJ()` 347e5f4302SBarry Smith if you do not set a type in the options database. If you never 35*11a5261eSBarry Smith call `MatSetType()` or `MatSetFromOptions()` it will generate an 36f8ab6608SSatish Balay error when you try to use the matrix. 3783e1b59cSLois Curfman McInnes 38d083f849SBarry Smith Collective 39cb13003dSBarry Smith 40f69a0ea3SMatthew Knepley Input Parameter: 41f69a0ea3SMatthew Knepley . comm - MPI communicator 427807a1faSBarry Smith 437807a1faSBarry Smith Output Parameter: 44dc401e71SLois Curfman McInnes . A - the matrix 45e0b365e2SLois Curfman McInnes 46273d9f13SBarry Smith Options Database Keys: 47*11a5261eSBarry Smith + -mat_type seqaij - `MATSEQAIJ` type, uses `MatCreateSeqAIJ()` 48*11a5261eSBarry Smith . -mat_type mpiaij - `MATMPIAIJ` type, uses `MatCreateAIJ()` 49*11a5261eSBarry Smith . -mat_type seqdense - `MATSEQDENSE`, uses `MatCreateSeqDense()` 50*11a5261eSBarry Smith . -mat_type mpidense - `MATMPIDENSE` type, uses `MatCreateDense()` 51*11a5261eSBarry Smith . -mat_type seqbaij - `MATSEQBAIJ` type, uses `MatCreateSeqBAIJ()` 52*11a5261eSBarry Smith - -mat_type mpibaij - `MATMPIBAIJ` type, uses `MatCreateBAIJ()` 53e0b365e2SLois Curfman McInnes 5483e1b59cSLois Curfman McInnes Even More Options Database Keys: 55*11a5261eSBarry Smith See the manpages for particular formats (e.g., `MatCreateSeqAIJ()`) 5683e1b59cSLois Curfman McInnes for additional format-specific options. 57e0b365e2SLois Curfman McInnes 58273d9f13SBarry Smith Level: beginner 59273d9f13SBarry Smith 60*11a5261eSBarry Smith `.seealso: `MatCreateSeqAIJ()`, `MatCreateAIJ()`, 61db781477SPatrick Sanan `MatCreateSeqDense()`, `MatCreateDense()`, 62db781477SPatrick Sanan `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, 63db781477SPatrick Sanan `MatCreateSeqSBAIJ()`, `MatCreateSBAIJ()`, 64db781477SPatrick Sanan `MatConvert()` 65273d9f13SBarry Smith @*/ 669371c9d4SSatish Balay PetscErrorCode MatCreate(MPI_Comm comm, Mat *A) { 67273d9f13SBarry Smith Mat B; 68273d9f13SBarry Smith 69273d9f13SBarry Smith PetscFunctionBegin; 70f69a0ea3SMatthew Knepley PetscValidPointer(A, 2); 7197f1f81fSBarry Smith 720298fd71SBarry Smith *A = NULL; 739566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 748ba1e511SMatthew Knepley 759566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(B, MAT_CLASSID, "Mat", "Matrix", "Mat", comm, MatDestroy, MatView)); 769566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &B->rmap)); 779566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &B->cmap)); 789566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD, &B->defaultvectype)); 7926fbe8dcSKarl Rupp 80b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_UNKNOWN; 81b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_UNKNOWN; 82b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_UNKNOWN; 83b94d7dedSBarry Smith B->spd = PETSC_BOOL3_UNKNOWN; 84b94d7dedSBarry Smith B->symmetry_eternal = PETSC_FALSE; 85b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_FALSE; 86b94d7dedSBarry Smith 8794342113SStefano Zampini B->congruentlayouts = PETSC_DECIDE; 88273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 896f3d89d0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 906f3d89d0SStefano Zampini B->boundtocpu = PETSC_TRUE; 916f3d89d0SStefano Zampini #endif 92273d9f13SBarry Smith *A = B; 93273d9f13SBarry Smith PetscFunctionReturn(0); 94273d9f13SBarry Smith } 95273d9f13SBarry Smith 96422a814eSBarry Smith /*@ 97*11a5261eSBarry Smith MatSetErrorIfFailure - Causes `Mat` to generate an immediate error, for example a zero pivot, is detected. 98422a814eSBarry Smith 99*11a5261eSBarry Smith Logically Collective on mat 100422a814eSBarry Smith 101422a814eSBarry Smith Input Parameters: 102*11a5261eSBarry Smith + mat - matrix obtained from `MatCreate()` 103*11a5261eSBarry Smith - flg - `PETSC_TRUE` indicates you want the error generated 104422a814eSBarry Smith 105422a814eSBarry Smith Level: advanced 106422a814eSBarry Smith 107*11a5261eSBarry Smith Note: 108*11a5261eSBarry Smith If this flag is not set then the matrix operation will note the error and continue. The error may cause a later `PC` or `KSP` error 109*11a5261eSBarry Smith or result in a `KSPConvergedReason` indicating the method did not converge. 110*11a5261eSBarry Smith 111*11a5261eSBarry Smith .seealso: `PCSetErrorIfFailure()`, `KSPConvergedReason`, `SNESConvergedReason` 112422a814eSBarry Smith @*/ 1139371c9d4SSatish Balay PetscErrorCode MatSetErrorIfFailure(Mat mat, PetscBool flg) { 114422a814eSBarry Smith PetscFunctionBegin; 115422a814eSBarry Smith PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 116422a814eSBarry Smith PetscValidLogicalCollectiveBool(mat, flg, 2); 11784d44b13SHong Zhang mat->erroriffailure = flg; 118422a814eSBarry Smith PetscFunctionReturn(0); 119422a814eSBarry Smith } 120422a814eSBarry Smith 121f69a0ea3SMatthew Knepley /*@ 122f69a0ea3SMatthew Knepley MatSetSizes - Sets the local and global sizes, and checks to determine compatibility 123f69a0ea3SMatthew Knepley 124f69a0ea3SMatthew Knepley Collective on Mat 125f69a0ea3SMatthew Knepley 126f69a0ea3SMatthew Knepley Input Parameters: 127f69a0ea3SMatthew Knepley + A - the matrix 128*11a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 129*11a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 130*11a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE`) 131*11a5261eSBarry Smith - N - number of global columns (or `PETSC_DETERMINE`) 132f69a0ea3SMatthew Knepley 133f69a0ea3SMatthew Knepley Notes: 134*11a5261eSBarry Smith m (n) and M (N) cannot be both `PETSC_DECIDE` 135*11a5261eSBarry Smith If one processor calls this with M (N) of `PETSC_DECIDE` then all processors must, otherwise the program will hang. 136f69a0ea3SMatthew Knepley 137*11a5261eSBarry Smith If `PETSC_DECIDE` is not used for the arguments 'm' and 'n', then the 138f69a0ea3SMatthew Knepley user must ensure that they are chosen to be compatible with the 139f69a0ea3SMatthew Knepley vectors. To do this, one first considers the matrix-vector product 140f69a0ea3SMatthew Knepley 'y = A x'. The 'm' that is used in the above routine must match the 141f69a0ea3SMatthew Knepley local size used in the vector creation routine VecCreateMPI() for 'y'. 142f69a0ea3SMatthew Knepley Likewise, the 'n' used must match that used as the local size in 143*11a5261eSBarry Smith `VecCreateMPI()` for 'x'. 144f69a0ea3SMatthew Knepley 145f73d5cc4SBarry Smith You cannot change the sizes once they have been set. 146f73d5cc4SBarry Smith 147*11a5261eSBarry Smith The sizes must be set before `MatSetUp()` or MatXXXSetPreallocation() is called. 148f73d5cc4SBarry Smith 149f69a0ea3SMatthew Knepley Level: beginner 150f69a0ea3SMatthew Knepley 151db781477SPatrick Sanan .seealso: `MatGetSize()`, `PetscSplitOwnership()` 152f69a0ea3SMatthew Knepley @*/ 1539371c9d4SSatish Balay PetscErrorCode MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) { 154f69a0ea3SMatthew Knepley PetscFunctionBegin; 1550700a824SBarry Smith PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 156a69c7061SStefano Zampini PetscValidLogicalCollectiveInt(A, M, 4); 157a69c7061SStefano Zampini PetscValidLogicalCollectiveInt(A, N, 5); 158aed4548fSBarry Smith PetscCheck(M <= 0 || m <= M, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local row size %" PetscInt_FMT " cannot be larger than global row size %" PetscInt_FMT, m, M); 159aed4548fSBarry Smith PetscCheck(N <= 0 || n <= N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local column size %" PetscInt_FMT " cannot be larger than global column size %" PetscInt_FMT, n, N); 1609371c9d4SSatish Balay PetscCheck((A->rmap->n < 0 || A->rmap->N < 0) || (A->rmap->n == m && (M <= 0 || A->rmap->N == M)), PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change/reset row sizes to %" PetscInt_FMT " local %" PetscInt_FMT " global after previously setting them to %" PetscInt_FMT " local %" PetscInt_FMT " global", m, M, 1619371c9d4SSatish Balay A->rmap->n, A->rmap->N); 1629371c9d4SSatish Balay PetscCheck((A->cmap->n < 0 || A->cmap->N < 0) || (A->cmap->n == n && (N <= 0 || A->cmap->N == N)), PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change/reset column sizes to %" PetscInt_FMT " local %" PetscInt_FMT " global after previously setting them to %" PetscInt_FMT " local %" PetscInt_FMT " global", n, N, 1639371c9d4SSatish Balay A->cmap->n, A->cmap->N); 164d0f46423SBarry Smith A->rmap->n = m; 165d0f46423SBarry Smith A->cmap->n = n; 16659cb773eSBarry Smith A->rmap->N = M > -1 ? M : A->rmap->N; 16759cb773eSBarry Smith A->cmap->N = N > -1 ? N : A->cmap->N; 168f69a0ea3SMatthew Knepley PetscFunctionReturn(0); 169f69a0ea3SMatthew Knepley } 170f69a0ea3SMatthew Knepley 17105869f15SSatish Balay /*@ 172273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 173273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 174273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 175*11a5261eSBarry Smith `MATAIJ`, using the routines `MatCreateSeqAIJ()` and `MatCreateAIJ()` if 1767e5f4302SBarry Smith you do not select a type in the options database. 177273d9f13SBarry Smith 178*11a5261eSBarry Smith Collective on B 179273d9f13SBarry Smith 180273d9f13SBarry Smith Input Parameter: 181273d9f13SBarry Smith . A - the matrix 182273d9f13SBarry Smith 183273d9f13SBarry Smith Options Database Keys: 184*11a5261eSBarry Smith + -mat_type seqaij - `MATSEQAIJ` type, uses `MatCreateSeqAIJ()` 185*11a5261eSBarry Smith . -mat_type mpiaij - `MATMPIAIJ` type, uses `MatCreateAIJ()` 186*11a5261eSBarry Smith . -mat_type seqdense - `MATSEQDENSE` type, uses `MatCreateSeqDense()` 187*11a5261eSBarry Smith . -mat_type mpidense - `MATMPIDENSE`, uses `MatCreateDense()` 188*11a5261eSBarry Smith . -mat_type seqbaij - `MATSEQBAIJ`, uses `MatCreateSeqBAIJ()` 189*11a5261eSBarry Smith - -mat_type mpibaij - `MATMPIBAIJ`, uses `MatCreateBAIJ()` 190273d9f13SBarry Smith 191273d9f13SBarry Smith Even More Options Database Keys: 192*11a5261eSBarry Smith See the manpages for particular formats (e.g., `MatCreateSeqAIJ()`) 193273d9f13SBarry Smith for additional format-specific options. 194bd9ce289SLois Curfman McInnes 1951d69843bSLois Curfman McInnes Level: beginner 1961d69843bSLois Curfman McInnes 197db781477SPatrick Sanan .seealso: `MatCreateSeqAIJ(()`, `MatCreateAIJ()`, 198db781477SPatrick Sanan `MatCreateSeqDense()`, `MatCreateDense()`, 199db781477SPatrick Sanan `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, 200db781477SPatrick Sanan `MatCreateSeqSBAIJ()`, `MatCreateSBAIJ()`, 201db781477SPatrick Sanan `MatConvert()` 2027807a1faSBarry Smith @*/ 2039371c9d4SSatish Balay PetscErrorCode MatSetFromOptions(Mat B) { 204f3be49caSLisandro Dalcin const char *deft = MATAIJ; 205f3be49caSLisandro Dalcin char type[256]; 20669df5c0cSJed Brown PetscBool flg, set; 20716e04d98SRichard Tran Mills PetscInt bind_below = 0; 208dbb450caSBarry Smith 2093a40ed3dSBarry Smith PetscFunctionBegin; 2100700a824SBarry Smith PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 211f3be49caSLisandro Dalcin 212d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)B); 213535b19f3SBarry Smith 214535b19f3SBarry Smith if (B->rmap->bs < 0) { 215535b19f3SBarry Smith PetscInt newbs = -1; 2169566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-mat_block_size", "Set the blocksize used to store the matrix", "MatSetBlockSize", newbs, &newbs, &flg)); 217535b19f3SBarry Smith if (flg) { 2189566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, newbs)); 2199566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, newbs)); 220535b19f3SBarry Smith } 221535b19f3SBarry Smith } 222535b19f3SBarry Smith 2239566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-mat_type", "Matrix type", "MatSetType", MatList, deft, type, 256, &flg)); 224273d9f13SBarry Smith if (flg) { 2259566063dSJacob Faibussowitsch PetscCall(MatSetType(B, type)); 226f3be49caSLisandro Dalcin } else if (!((PetscObject)B)->type_name) { 2279566063dSJacob Faibussowitsch PetscCall(MatSetType(B, deft)); 228273d9f13SBarry Smith } 229f3be49caSLisandro Dalcin 2309566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_is_symmetric", "Checks if mat is symmetric on MatAssemblyEnd()", "MatIsSymmetric", &B->checksymmetryonassembly)); 2319566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_is_symmetric", "Checks if mat is symmetric on MatAssemblyEnd()", "MatIsSymmetric", B->checksymmetrytol, &B->checksymmetrytol, NULL)); 2329566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_null_space_test", "Checks if provided null space is correct in MatAssemblyEnd()", "MatSetNullSpaceTest", B->checknullspaceonassembly, &B->checknullspaceonassembly, NULL)); 2339566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_error_if_failure", "Generate an error if an error occurs when factoring the matrix", "MatSetErrorIfFailure", B->erroriffailure, &B->erroriffailure, NULL)); 234840d65ccSBarry Smith 235dbbe0bcdSBarry Smith PetscTryTypeMethod(B, setfromoptions, PetscOptionsObject); 236f3be49caSLisandro Dalcin 23769df5c0cSJed Brown flg = PETSC_FALSE; 2389566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_new_nonzero_location_err", "Generate an error if new nonzeros are created in the matrix structure (useful to test preallocation)", "MatSetOption", flg, &flg, &set)); 2399566063dSJacob Faibussowitsch if (set) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, flg)); 24069df5c0cSJed Brown flg = PETSC_FALSE; 2419566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_new_nonzero_allocation_err", "Generate an error if new nonzeros are allocated in the matrix structure (useful to test preallocation)", "MatSetOption", flg, &flg, &set)); 2429566063dSJacob Faibussowitsch if (set) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, flg)); 243478db826SMatthew G. Knepley flg = PETSC_FALSE; 2449566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_ignore_zero_entries", "For AIJ/IS matrices this will stop zero values from creating a zero location in the matrix", "MatSetOption", flg, &flg, &set)); 2459566063dSJacob Faibussowitsch if (set) PetscCall(MatSetOption(B, MAT_IGNORE_ZERO_ENTRIES, flg)); 24669df5c0cSJed Brown 2471a2c6b5cSJunchao Zhang flg = PETSC_FALSE; 2489566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_form_explicit_transpose", "Hint to form an explicit transpose for operations like MatMultTranspose", "MatSetOption", flg, &flg, &set)); 2499566063dSJacob Faibussowitsch if (set) PetscCall(MatSetOption(B, MAT_FORM_EXPLICIT_TRANSPOSE, flg)); 2501a2c6b5cSJunchao Zhang 25116e04d98SRichard Tran Mills /* Bind to CPU if below a user-specified size threshold. 25216e04d98SRichard Tran Mills * This perhaps belongs in the options for the GPU Mat types, but MatBindToCPU() does nothing when called on non-GPU types, 25316e04d98SRichard Tran Mills * and putting it here makes is more maintainable than duplicating this for all. */ 2549566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-mat_bind_below", "Set the size threshold (in local rows) below which the Mat is bound to the CPU", "MatBindToCPU", bind_below, &bind_below, &flg)); 25548a46eb9SPierre Jolivet if (flg && B->rmap->n < bind_below) PetscCall(MatBindToCPU(B, PETSC_TRUE)); 25616e04d98SRichard Tran Mills 2575d973c19SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 258dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)B, PetscOptionsObject)); 259d0609cedSBarry Smith PetscOptionsEnd(); 2603a40ed3dSBarry Smith PetscFunctionReturn(0); 2617807a1faSBarry Smith } 2627807a1faSBarry Smith 263987010e7SBarry Smith /*@C 264*11a5261eSBarry Smith MatXAIJSetPreallocation - set preallocation for serial and parallel `MATAIJ`, `MATBAIJ`, and `MATSBAIJ` matrices and their unassembled versions. 26563562e91SJed Brown 266*11a5261eSBarry Smith Collective on A 26763562e91SJed Brown 2684165533cSJose E. Roman Input Parameters: 26963562e91SJed Brown + A - matrix being preallocated 27063562e91SJed Brown . bs - block size 27141319c1dSStefano Zampini . dnnz - number of nonzero column blocks per block row of diagonal part of parallel matrix 27241319c1dSStefano Zampini . onnz - number of nonzero column blocks per block row of off-diagonal part of parallel matrix 27341319c1dSStefano Zampini . dnnzu - number of nonzero column blocks per block row of upper-triangular part of diagonal part of parallel matrix 27441319c1dSStefano Zampini - onnzu - number of nonzero column blocks per block row of upper-triangular part of off-diagonal part of parallel matrix 27563562e91SJed Brown 27663562e91SJed Brown Level: beginner 27763562e91SJed Brown 278db781477SPatrick Sanan .seealso: `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`, 279db781477SPatrick Sanan `PetscSplitOwnership()` 28063562e91SJed Brown @*/ 2819371c9d4SSatish Balay PetscErrorCode MatXAIJSetPreallocation(Mat A, PetscInt bs, const PetscInt dnnz[], const PetscInt onnz[], const PetscInt dnnzu[], const PetscInt onnzu[]) { 28241319c1dSStefano Zampini PetscInt cbs; 28363562e91SJed Brown void (*aij)(void); 284e8bd9bafSStefano Zampini void (*is)(void); 285990279feSStefano Zampini void (*hyp)(void) = NULL; 28663562e91SJed Brown 28763562e91SJed Brown PetscFunctionBegin; 28841319c1dSStefano Zampini if (bs != PETSC_DECIDE) { /* don't mess with an already set block size */ 2899566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(A, bs)); 29041319c1dSStefano Zampini } 2919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 2929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 2939566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(A, &bs, &cbs)); 29441319c1dSStefano Zampini /* these routines assumes bs == cbs, this should be checked somehow */ 2959566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(A, bs, 0, dnnz)); 2969566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, bs, 0, dnnz, 0, onnz)); 2979566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(A, bs, 0, dnnzu)); 2989566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, bs, 0, dnnzu, 0, onnzu)); 29963562e91SJed Brown /* 300e8bd9bafSStefano Zampini In general, we have to do extra work to preallocate for scalar (AIJ) or unassembled (IS) matrices so we check whether it will do any 30163562e91SJed Brown good before going on with it. 30263562e91SJed Brown */ 3039566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJSetPreallocation_C", &aij)); 3049566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatISSetPreallocation_C", &is)); 305990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 3069566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatHYPRESetPreallocation_C", &hyp)); 307990279feSStefano Zampini #endif 30848a46eb9SPierre Jolivet if (!aij && !is && !hyp) PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJSetPreallocation_C", &aij)); 309990279feSStefano Zampini if (aij || is || hyp) { 31041319c1dSStefano Zampini if (bs == cbs && bs == 1) { 3119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(A, 0, dnnz)); 3129566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(A, 0, dnnz, 0, onnz)); 3139566063dSJacob Faibussowitsch PetscCall(MatISSetPreallocation(A, 0, dnnz, 0, onnz)); 314990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 3159566063dSJacob Faibussowitsch PetscCall(MatHYPRESetPreallocation(A, 0, dnnz, 0, onnz)); 316990279feSStefano Zampini #endif 3173e5f4774SJed Brown } else { /* Convert block-row precallocation to scalar-row */ 31863562e91SJed Brown PetscInt i, m, *sdnnz, *sonnz; 3199566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, NULL)); 3209566063dSJacob Faibussowitsch PetscCall(PetscMalloc2((!!dnnz) * m, &sdnnz, (!!onnz) * m, &sonnz)); 321dec54756SJed Brown for (i = 0; i < m; i++) { 32241319c1dSStefano Zampini if (dnnz) sdnnz[i] = dnnz[i / bs] * cbs; 32341319c1dSStefano Zampini if (onnz) sonnz[i] = onnz[i / bs] * cbs; 32463562e91SJed Brown } 3259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(A, 0, dnnz ? sdnnz : NULL)); 3269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL)); 3279566063dSJacob Faibussowitsch PetscCall(MatISSetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL)); 328990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 3299566063dSJacob Faibussowitsch PetscCall(MatHYPRESetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL)); 330990279feSStefano Zampini #endif 3319566063dSJacob Faibussowitsch PetscCall(PetscFree2(sdnnz, sonnz)); 33263562e91SJed Brown } 33363562e91SJed Brown } 33463562e91SJed Brown PetscFunctionReturn(0); 33563562e91SJed Brown } 33663562e91SJed Brown 337273d9f13SBarry Smith /* 338eb6b5d47SBarry Smith Merges some information from Cs header to A; the C object is then destroyed 339d0f46423SBarry Smith 340d0f46423SBarry Smith This is somewhat different from MatHeaderReplace() it would be nice to merge the code 341273d9f13SBarry Smith */ 3429371c9d4SSatish Balay PetscErrorCode MatHeaderMerge(Mat A, Mat *C) { 343d44834fbSBarry Smith PetscInt refct; 34473107ff1SLisandro Dalcin PetscOps Abops; 34573107ff1SLisandro Dalcin struct _MatOps Aops; 3464768301cSVaclav Hapla char *mtype, *mname, *mprefix; 3474222ddf1SHong Zhang Mat_Product *product; 34833e6eea4SJose E. Roman Mat_Redundant *redundant; 349d4a972cbSStefano Zampini PetscObjectState state; 350273d9f13SBarry Smith 351273d9f13SBarry Smith PetscFunctionBegin; 3521dc04de0SStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 3531dc04de0SStefano Zampini PetscValidHeaderSpecific(*C, MAT_CLASSID, 2); 3541dc04de0SStefano Zampini if (A == *C) PetscFunctionReturn(0); 3551dc04de0SStefano Zampini PetscCheckSameComm(A, 1, *C, 2); 356273d9f13SBarry Smith /* save the parts of A we need */ 35773107ff1SLisandro Dalcin Abops = ((PetscObject)A)->bops[0]; 35873107ff1SLisandro Dalcin Aops = A->ops[0]; 3597adad957SLisandro Dalcin refct = ((PetscObject)A)->refct; 3605c9eb25fSBarry Smith mtype = ((PetscObject)A)->type_name; 3615c9eb25fSBarry Smith mname = ((PetscObject)A)->name; 362d4a972cbSStefano Zampini state = ((PetscObject)A)->state; 3634768301cSVaclav Hapla mprefix = ((PetscObject)A)->prefix; 3644222ddf1SHong Zhang product = A->product; 36533e6eea4SJose E. Roman redundant = A->redundant; 36630735b05SKris Buschelman 3675c9eb25fSBarry Smith /* zero these so the destroy below does not free them */ 368f4259b30SLisandro Dalcin ((PetscObject)A)->type_name = NULL; 369f4259b30SLisandro Dalcin ((PetscObject)A)->name = NULL; 3705c9eb25fSBarry Smith 371dbbe0bcdSBarry Smith /* 372dbbe0bcdSBarry Smith free all the interior data structures from mat 373dbbe0bcdSBarry Smith cannot use PetscUseTypeMethod(A,destroy); because compiler 374dbbe0bcdSBarry Smith thinks it may print NULL type_name and name 375dbbe0bcdSBarry Smith */ 376dbbe0bcdSBarry Smith PetscTryTypeMethod(A, destroy); 3777c99f97cSSatish Balay 3789566063dSJacob Faibussowitsch PetscCall(PetscFree(A->defaultvectype)); 3799566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&A->rmap)); 3809566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&A->cmap)); 3819566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDestroy(&((PetscObject)A)->qlist)); 3829566063dSJacob Faibussowitsch PetscCall(PetscObjectListDestroy(&((PetscObject)A)->olist)); 3839566063dSJacob Faibussowitsch PetscCall(PetscComposedQuantitiesDestroy((PetscObject)A)); 384273d9f13SBarry Smith 385273d9f13SBarry Smith /* copy C over to A */ 38626cc229bSBarry Smith PetscCall(PetscFree(A->factorprefix)); 3879566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(A, *C, sizeof(struct _p_Mat))); 388273d9f13SBarry Smith 389273d9f13SBarry Smith /* return the parts of A we saved */ 39073107ff1SLisandro Dalcin ((PetscObject)A)->bops[0] = Abops; 39173107ff1SLisandro Dalcin A->ops[0] = Aops; 3927adad957SLisandro Dalcin ((PetscObject)A)->refct = refct; 3937adad957SLisandro Dalcin ((PetscObject)A)->type_name = mtype; 3947adad957SLisandro Dalcin ((PetscObject)A)->name = mname; 3954768301cSVaclav Hapla ((PetscObject)A)->prefix = mprefix; 396d4a972cbSStefano Zampini ((PetscObject)A)->state = state + 1; 3974222ddf1SHong Zhang A->product = product; 39833e6eea4SJose E. Roman A->redundant = redundant; 399273d9f13SBarry Smith 4005c9eb25fSBarry Smith /* since these two are copied into A we do not want them destroyed in C */ 401f4259b30SLisandro Dalcin ((PetscObject)*C)->qlist = NULL; 402f4259b30SLisandro Dalcin ((PetscObject)*C)->olist = NULL; 40326fbe8dcSKarl Rupp 4049566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(C)); 405273d9f13SBarry Smith PetscFunctionReturn(0); 406273d9f13SBarry Smith } 4078ab5b326SKris Buschelman /* 408eb6b5d47SBarry Smith Replace A's header with that of C; the C object is then destroyed 409d0f46423SBarry Smith 410eb6b5d47SBarry Smith This is essentially code moved from MatDestroy() 411eb6b5d47SBarry Smith 412eb6b5d47SBarry Smith This is somewhat different from MatHeaderMerge() it would be nice to merge the code 413b30237c6SBarry Smith 414b30237c6SBarry Smith Used in DM hence is declared PETSC_EXTERN 4158ab5b326SKris Buschelman */ 4169371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat A, Mat *C) { 41727b31e29SJed Brown PetscInt refct; 418fefd9316SJose E. Roman PetscObjectState state; 41928be2f97SBarry Smith struct _p_Mat buffer; 42081fa06acSBarry Smith MatStencilInfo stencil; 4218ab5b326SKris Buschelman 4228ab5b326SKris Buschelman PetscFunctionBegin; 42327b31e29SJed Brown PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 42428be2f97SBarry Smith PetscValidHeaderSpecific(*C, MAT_CLASSID, 2); 42528be2f97SBarry Smith if (A == *C) PetscFunctionReturn(0); 42628be2f97SBarry Smith PetscCheckSameComm(A, 1, *C, 2); 427aed4548fSBarry Smith PetscCheck(((PetscObject)*C)->refct == 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "Object C has refct %" PetscInt_FMT " > 1, would leave hanging reference", ((PetscObject)*C)->refct); 4286d7c1e57SBarry Smith 42928be2f97SBarry Smith /* swap C and A */ 43027b31e29SJed Brown refct = ((PetscObject)A)->refct; 431fefd9316SJose E. Roman state = ((PetscObject)A)->state; 43281fa06acSBarry Smith stencil = A->stencil; 4339566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(&buffer, A, sizeof(struct _p_Mat))); 4349566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(A, *C, sizeof(struct _p_Mat))); 4359566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(*C, &buffer, sizeof(struct _p_Mat))); 43627b31e29SJed Brown ((PetscObject)A)->refct = refct; 437fefd9316SJose E. Roman ((PetscObject)A)->state = state + 1; 43881fa06acSBarry Smith A->stencil = stencil; 43926fbe8dcSKarl Rupp 440c32d4117SBarry Smith ((PetscObject)*C)->refct = 1; 4419566063dSJacob Faibussowitsch PetscCall(MatShellSetOperation(*C, MATOP_DESTROY, (void (*)(void))NULL)); 4429566063dSJacob Faibussowitsch PetscCall(MatDestroy(C)); 4438ab5b326SKris Buschelman PetscFunctionReturn(0); 4448ab5b326SKris Buschelman } 445e7e92044SBarry Smith 446e7e92044SBarry Smith /*@ 447b470e4b4SRichard Tran Mills MatBindToCPU - marks a matrix to temporarily stay on the CPU and perform computations on the CPU 448e7e92044SBarry Smith 449*11a5261eSBarry Smith Logically collective on A 4502216c58aSStefano Zampini 451e7e92044SBarry Smith Input Parameters: 452e7e92044SBarry Smith + A - the matrix 453*11a5261eSBarry Smith - flg - bind to the CPU if value of `PETSC_TRUE` 454e7e92044SBarry Smith 45590ea27d8SSatish Balay Level: intermediate 4562216c58aSStefano Zampini 457db781477SPatrick Sanan .seealso: `MatBoundToCPU()` 458e7e92044SBarry Smith @*/ 4599371c9d4SSatish Balay PetscErrorCode MatBindToCPU(Mat A, PetscBool flg) { 4607d871021SStefano Zampini PetscFunctionBegin; 4612ffa8ee7SStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4622ffa8ee7SStefano Zampini PetscValidLogicalCollectiveBool(A, flg, 2); 4632216c58aSStefano Zampini #if defined(PETSC_HAVE_DEVICE) 464b470e4b4SRichard Tran Mills if (A->boundtocpu == flg) PetscFunctionReturn(0); 465b470e4b4SRichard Tran Mills A->boundtocpu = flg; 466dbbe0bcdSBarry Smith PetscTryTypeMethod(A, bindtocpu, flg); 4672216c58aSStefano Zampini #endif 468e7e92044SBarry Smith PetscFunctionReturn(0); 4692216c58aSStefano Zampini } 4702216c58aSStefano Zampini 4712216c58aSStefano Zampini /*@ 4722216c58aSStefano Zampini MatBoundToCPU - query if a matrix is bound to the CPU 4732216c58aSStefano Zampini 4742216c58aSStefano Zampini Input Parameter: 4752216c58aSStefano Zampini . A - the matrix 4762216c58aSStefano Zampini 4772216c58aSStefano Zampini Output Parameter: 4782216c58aSStefano Zampini . flg - the logical flag 4792216c58aSStefano Zampini 4802216c58aSStefano Zampini Level: intermediate 4812216c58aSStefano Zampini 482db781477SPatrick Sanan .seealso: `MatBindToCPU()` 4832216c58aSStefano Zampini @*/ 4849371c9d4SSatish Balay PetscErrorCode MatBoundToCPU(Mat A, PetscBool *flg) { 4852ffa8ee7SStefano Zampini PetscFunctionBegin; 4862ffa8ee7SStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 487dadcf809SJacob Faibussowitsch PetscValidBoolPointer(flg, 2); 4882216c58aSStefano Zampini #if defined(PETSC_HAVE_DEVICE) 4892216c58aSStefano Zampini *flg = A->boundtocpu; 4902216c58aSStefano Zampini #else 4912216c58aSStefano Zampini *flg = PETSC_TRUE; 4927d871021SStefano Zampini #endif 4932216c58aSStefano Zampini PetscFunctionReturn(0); 494e7e92044SBarry Smith } 4957e8381f9SStefano Zampini 4969371c9d4SSatish Balay PetscErrorCode MatSetValuesCOO_Basic(Mat A, const PetscScalar coo_v[], InsertMode imode) { 4977e8381f9SStefano Zampini IS is_coo_i, is_coo_j; 4987e8381f9SStefano Zampini const PetscInt *coo_i, *coo_j; 4997e8381f9SStefano Zampini PetscInt n, n_i, n_j; 5007e8381f9SStefano Zampini PetscScalar zero = 0.; 5017e8381f9SStefano Zampini 5027e8381f9SStefano Zampini PetscFunctionBegin; 5039566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_coo_i", (PetscObject *)&is_coo_i)); 5049566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_coo_j", (PetscObject *)&is_coo_j)); 50528b400f6SJacob Faibussowitsch PetscCheck(is_coo_i, PetscObjectComm((PetscObject)A), PETSC_ERR_COR, "Missing coo_i IS"); 50628b400f6SJacob Faibussowitsch PetscCheck(is_coo_j, PetscObjectComm((PetscObject)A), PETSC_ERR_COR, "Missing coo_j IS"); 5079566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(is_coo_i, &n_i)); 5089566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(is_coo_j, &n_j)); 50908401ef6SPierre Jolivet PetscCheck(n_i == n_j, PETSC_COMM_SELF, PETSC_ERR_COR, "Wrong local size %" PetscInt_FMT " != %" PetscInt_FMT, n_i, n_j); 5109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is_coo_i, &coo_i)); 5119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is_coo_j, &coo_j)); 51248a46eb9SPierre Jolivet if (imode != ADD_VALUES) PetscCall(MatZeroEntries(A)); 51348a46eb9SPierre Jolivet for (n = 0; n < n_i; n++) PetscCall(MatSetValue(A, coo_i[n], coo_j[n], coo_v ? coo_v[n] : zero, ADD_VALUES)); 5149566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is_coo_i, &coo_i)); 5159566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is_coo_j, &coo_j)); 5167e8381f9SStefano Zampini PetscFunctionReturn(0); 5177e8381f9SStefano Zampini } 5187e8381f9SStefano Zampini 5199371c9d4SSatish Balay PetscErrorCode MatSetPreallocationCOO_Basic(Mat A, PetscCount ncoo, const PetscInt coo_i[], const PetscInt coo_j[]) { 5207e8381f9SStefano Zampini Mat preallocator; 5217e8381f9SStefano Zampini IS is_coo_i, is_coo_j; 5227e8381f9SStefano Zampini PetscScalar zero = 0.0; 5237e8381f9SStefano Zampini 5247e8381f9SStefano Zampini PetscFunctionBegin; 5259566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 5269566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 5279566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &preallocator)); 5289566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 5299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 5309566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(preallocator, A->rmap, A->cmap)); 5319566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 53248a46eb9SPierre Jolivet for (PetscCount n = 0; n < ncoo; n++) PetscCall(MatSetValue(preallocator, coo_i[n], coo_j[n], zero, INSERT_VALUES)); 5339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 5349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 5359566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, A)); 5369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 5372c71b3e2SJacob Faibussowitsch PetscCheck(ncoo <= PETSC_MAX_INT, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ncoo %" PetscCount_FMT " overflowed PetscInt; configure --with-64-bit-indices or request support", ncoo); 5389566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncoo, coo_i, PETSC_COPY_VALUES, &is_coo_i)); 5399566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncoo, coo_j, PETSC_COPY_VALUES, &is_coo_j)); 5409566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_coo_i", (PetscObject)is_coo_i)); 5419566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_coo_j", (PetscObject)is_coo_j)); 5429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is_coo_i)); 5439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is_coo_j)); 5447e8381f9SStefano Zampini PetscFunctionReturn(0); 5457e8381f9SStefano Zampini } 5467e8381f9SStefano Zampini 54756856777SBarry Smith /*@C 548c3dd2894SJed Brown MatSetPreallocationCOO - set preallocation for matrices using a coordinate format of the entries with global indices 5497e8381f9SStefano Zampini 550*11a5261eSBarry Smith Collective on A 5517e8381f9SStefano Zampini 5524165533cSJose E. Roman Input Parameters: 5537e8381f9SStefano Zampini + A - matrix being preallocated 55442550becSJunchao Zhang . ncoo - number of entries 5557e8381f9SStefano Zampini . coo_i - row indices 5567e8381f9SStefano Zampini - coo_j - column indices 5577e8381f9SStefano Zampini 5587e8381f9SStefano Zampini Level: beginner 5597e8381f9SStefano Zampini 560394ed5ebSJunchao Zhang Notes: 561e8729f6fSJunchao Zhang The indices coo_i and coo_j may be modified within this function. The caller should not rely on them 562e8729f6fSJunchao Zhang having any specific value after this function returns. The arrays can be freed or reused immediately 563e8729f6fSJunchao Zhang after this function returns. 564e8729f6fSJunchao Zhang 565*11a5261eSBarry Smith Entries can be repeated, see `MatSetValuesCOO()`. Entries with negative row or column indices are allowed 566*11a5261eSBarry Smith but will be ignored. The corresponding entries in `MatSetValuesCOO()` will be ignored too. Remote entries 567394ed5ebSJunchao Zhang are allowed and will be properly added or inserted to the matrix, unless the matrix option MAT_IGNORE_OFF_PROC_ENTRIES 568*11a5261eSBarry Smith is set, in which case remote entries are ignored, or `MAT_NO_OFF_PROC_ENTRIES` is set, in which case an error will be generated. 5697e8381f9SStefano Zampini 570db781477SPatrick Sanan .seealso: `MatSetValuesCOO()`, `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`, `MatSetPreallocationCOOLocal()`, `DMSetMatrixPreallocateSkip()` 5717e8381f9SStefano Zampini @*/ 5729371c9d4SSatish Balay PetscErrorCode MatSetPreallocationCOO(Mat A, PetscCount ncoo, PetscInt coo_i[], PetscInt coo_j[]) { 57382a78a4eSJed Brown PetscErrorCode (*f)(Mat, PetscCount, const PetscInt[], const PetscInt[]) = NULL; 5747e8381f9SStefano Zampini 5757e8381f9SStefano Zampini PetscFunctionBegin; 5767e8381f9SStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 5777e8381f9SStefano Zampini PetscValidType(A, 1); 5787e8381f9SStefano Zampini if (ncoo) PetscValidIntPointer(coo_i, 3); 5797e8381f9SStefano Zampini if (ncoo) PetscValidIntPointer(coo_j, 4); 5809566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 5819566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 5829566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetPreallocationCOO_C", &f)); 583cbc6b225SStefano Zampini 5849566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_PreallCOO, A, 0, 0, 0)); 5857e8381f9SStefano Zampini if (f) { 5869566063dSJacob Faibussowitsch PetscCall((*f)(A, ncoo, coo_i, coo_j)); 5877e8381f9SStefano Zampini } else { /* allow fallback, very slow */ 5889566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO_Basic(A, ncoo, coo_i, coo_j)); 5897e8381f9SStefano Zampini } 5909566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_PreallCOO, A, 0, 0, 0)); 5916834774dSStefano Zampini A->preallocated = PETSC_TRUE; 592cbc6b225SStefano Zampini A->nonzerostate++; 5937e8381f9SStefano Zampini PetscFunctionReturn(0); 5947e8381f9SStefano Zampini } 5957e8381f9SStefano Zampini 59656856777SBarry Smith /*@C 597c3dd2894SJed Brown MatSetPreallocationCOOLocal - set preallocation for matrices using a coordinate format of the entries with local indices 598c3dd2894SJed Brown 599*11a5261eSBarry Smith Collective on A 600c3dd2894SJed Brown 601c3dd2894SJed Brown Input Parameters: 602c3dd2894SJed Brown + A - matrix being preallocated 603c3dd2894SJed Brown . ncoo - number of entries 604c3dd2894SJed Brown . coo_i - row indices (local numbering; may be modified) 605c3dd2894SJed Brown - coo_j - column indices (local numbering; may be modified) 606c3dd2894SJed Brown 607c3dd2894SJed Brown Level: beginner 608c3dd2894SJed Brown 609c3dd2894SJed Brown Notes: 610*11a5261eSBarry Smith The local indices are translated using the local to global mapping, thus `MatSetLocalToGlobalMapping()` must have been 611*11a5261eSBarry Smith called prior to this function. For matrices created with `DMCreateMatrix()` the local to global mapping is often already provided. 612c3dd2894SJed Brown 613c3dd2894SJed Brown The indices coo_i and coo_j may be modified within this function. They might be translated to corresponding global 614735d7f90SBarry Smith indices, but the caller should not rely on them having any specific value after this function returns. The arrays 615735d7f90SBarry Smith can be freed or reused immediately after this function returns. 616c3dd2894SJed Brown 617*11a5261eSBarry Smith Entries can be repeated, see `MatSetValuesCOO()`. Entries with negative row or column indices are allowed 618*11a5261eSBarry Smith but will be ignored. The corresponding entries in `MatSetValuesCOO()` will be ignored too. Remote entries 619394ed5ebSJunchao Zhang are allowed and will be properly added or inserted to the matrix. 620c3dd2894SJed Brown 621db781477SPatrick Sanan .seealso: `MatSetValuesCOO()`, `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`, `MatSetPreallocationCOO()`, `DMSetMatrixPreallocateSkip()` 622c3dd2894SJed Brown @*/ 6239371c9d4SSatish Balay PetscErrorCode MatSetPreallocationCOOLocal(Mat A, PetscCount ncoo, PetscInt coo_i[], PetscInt coo_j[]) { 6246834774dSStefano Zampini PetscErrorCode (*f)(Mat, PetscCount, PetscInt[], PetscInt[]) = NULL; 625c3dd2894SJed Brown 626c3dd2894SJed Brown PetscFunctionBegin; 627c3dd2894SJed Brown PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 628c3dd2894SJed Brown PetscValidType(A, 1); 629c3dd2894SJed Brown if (ncoo) PetscValidIntPointer(coo_i, 3); 630c3dd2894SJed Brown if (ncoo) PetscValidIntPointer(coo_j, 4); 6316834774dSStefano Zampini PetscCheck(ncoo <= PETSC_MAX_INT, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ncoo %" PetscCount_FMT " overflowed PetscInt; configure --with-64-bit-indices or request support", ncoo); 6329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 6339566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 634cbc6b225SStefano Zampini 6359566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetPreallocationCOOLocal_C", &f)); 6366834774dSStefano Zampini if (f) { 6379566063dSJacob Faibussowitsch PetscCall((*f)(A, ncoo, coo_i, coo_j)); 638cbc6b225SStefano Zampini A->nonzerostate++; 6396834774dSStefano Zampini } else { 640cbc6b225SStefano Zampini ISLocalToGlobalMapping ltog_row, ltog_col; 6419566063dSJacob Faibussowitsch PetscCall(MatGetLocalToGlobalMapping(A, <og_row, <og_col)); 6429566063dSJacob Faibussowitsch if (ltog_row) PetscCall(ISLocalToGlobalMappingApply(ltog_row, ncoo, coo_i, coo_i)); 6439566063dSJacob Faibussowitsch if (ltog_col) PetscCall(ISLocalToGlobalMappingApply(ltog_col, ncoo, coo_j, coo_j)); 6449566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(A, ncoo, coo_i, coo_j)); 6456834774dSStefano Zampini } 6466834774dSStefano Zampini A->preallocated = PETSC_TRUE; 647c3dd2894SJed Brown PetscFunctionReturn(0); 648c3dd2894SJed Brown } 649c3dd2894SJed Brown 650c3dd2894SJed Brown /*@ 651*11a5261eSBarry Smith MatSetValuesCOO - set values at once in a matrix preallocated using `MatSetPreallocationCOO()` 6527e8381f9SStefano Zampini 653*11a5261eSBarry Smith Collective on A 6547e8381f9SStefano Zampini 6554165533cSJose E. Roman Input Parameters: 6567e8381f9SStefano Zampini + A - matrix being preallocated 657bfcc3627SStefano Zampini . coo_v - the matrix values (can be NULL) 6587e8381f9SStefano Zampini - imode - the insert mode 6597e8381f9SStefano Zampini 6607e8381f9SStefano Zampini Level: beginner 6617e8381f9SStefano Zampini 662*11a5261eSBarry Smith Notes: 663*11a5261eSBarry Smith The values must follow the order of the indices prescribed with `MatSetPreallocationCOO()` or `MatSetPreallocationCOOLocal()`. 664*11a5261eSBarry Smith 665735d7f90SBarry Smith When repeated entries are specified in the COO indices the coo_v values are first properly summed, regardless of the value of imode. 666*11a5261eSBarry Smith The imode flag indicates if coo_v must be added to the current values of the matrix (`ADD_VALUES`) or overwritten (`INSERT_VALUES`). 667*11a5261eSBarry Smith 668*11a5261eSBarry Smith `MatAssemblyBegin()` and `MatAssemblyEnd()` do not need to be called after this routine. It automatically handles the assembly process. 6697e8381f9SStefano Zampini 670db781477SPatrick Sanan .seealso: `MatSetPreallocationCOO()`, `MatSetPreallocationCOOLocal()`, `InsertMode`, `INSERT_VALUES`, `ADD_VALUES` 6717e8381f9SStefano Zampini @*/ 6729371c9d4SSatish Balay PetscErrorCode MatSetValuesCOO(Mat A, const PetscScalar coo_v[], InsertMode imode) { 6737e8381f9SStefano Zampini PetscErrorCode (*f)(Mat, const PetscScalar[], InsertMode) = NULL; 6747e8381f9SStefano Zampini 6757e8381f9SStefano Zampini PetscFunctionBegin; 6767e8381f9SStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 6777e8381f9SStefano Zampini PetscValidType(A, 1); 6787e8381f9SStefano Zampini MatCheckPreallocated(A, 1); 679bfcc3627SStefano Zampini PetscValidLogicalCollectiveEnum(A, imode, 3); 6809566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetValuesCOO_C", &f)); 6819566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetVCOO, A, 0, 0, 0)); 6827e8381f9SStefano Zampini if (f) { 6839566063dSJacob Faibussowitsch PetscCall((*f)(A, coo_v, imode)); 6847e8381f9SStefano Zampini } else { /* allow fallback */ 6859566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO_Basic(A, coo_v, imode)); 6867e8381f9SStefano Zampini } 6879566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetVCOO, A, 0, 0, 0)); 6889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 6899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 6907e8381f9SStefano Zampini PetscFunctionReturn(0); 6917e8381f9SStefano Zampini } 69265a9ecf2SRichard Tran Mills 69365a9ecf2SRichard Tran Mills /*@ 69465a9ecf2SRichard Tran Mills MatSetBindingPropagates - Sets whether the state of being bound to the CPU for a GPU matrix type propagates to child and some other associated objects 69565a9ecf2SRichard Tran Mills 69665a9ecf2SRichard Tran Mills Input Parameters: 69765a9ecf2SRichard Tran Mills + A - the matrix 69865a9ecf2SRichard Tran Mills - flg - flag indicating whether the boundtocpu flag should be propagated 69965a9ecf2SRichard Tran Mills 70065a9ecf2SRichard Tran Mills Level: developer 70165a9ecf2SRichard Tran Mills 70265a9ecf2SRichard Tran Mills Notes: 70365a9ecf2SRichard Tran Mills If the value of flg is set to true, the following will occur: 70465a9ecf2SRichard Tran Mills 705*11a5261eSBarry Smith `MatCreateSubMatrices()` and `MatCreateRedundantMatrix()` will bind created matrices to CPU if the input matrix is bound to the CPU. 706*11a5261eSBarry Smith 707*11a5261eSBarry Smith `MatCreateVecs()` will bind created vectors to CPU if the input matrix is bound to the CPU. 70865a9ecf2SRichard Tran Mills The bindingpropagates flag itself is also propagated by the above routines. 70965a9ecf2SRichard Tran Mills 710*11a5261eSBarry Smith Developer Note: 711*11a5261eSBarry Smith If the fine-scale `DMDA `has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 71265a9ecf2SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 71365a9ecf2SRichard Tran Mills 714db781477SPatrick Sanan .seealso: `VecSetBindingPropagates()`, `MatGetBindingPropagates()` 71565a9ecf2SRichard Tran Mills @*/ 7169371c9d4SSatish Balay PetscErrorCode MatSetBindingPropagates(Mat A, PetscBool flg) { 71765a9ecf2SRichard Tran Mills PetscFunctionBegin; 71865a9ecf2SRichard Tran Mills PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 71965a9ecf2SRichard Tran Mills #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) 72065a9ecf2SRichard Tran Mills A->bindingpropagates = flg; 72165a9ecf2SRichard Tran Mills #endif 72265a9ecf2SRichard Tran Mills PetscFunctionReturn(0); 72365a9ecf2SRichard Tran Mills } 724e9c74fd6SRichard Tran Mills 725e9c74fd6SRichard Tran Mills /*@ 726e9c74fd6SRichard Tran Mills MatGetBindingPropagates - Gets whether the state of being bound to the CPU for a GPU matrix type propagates to child and some other associated objects 727e9c74fd6SRichard Tran Mills 728e9c74fd6SRichard Tran Mills Input Parameter: 729e9c74fd6SRichard Tran Mills . A - the matrix 730e9c74fd6SRichard Tran Mills 731e9c74fd6SRichard Tran Mills Output Parameter: 732e9c74fd6SRichard Tran Mills . flg - flag indicating whether the boundtocpu flag will be propagated 733e9c74fd6SRichard Tran Mills 734e9c74fd6SRichard Tran Mills Level: developer 735e9c74fd6SRichard Tran Mills 736db781477SPatrick Sanan .seealso: `MatSetBindingPropagates()` 737e9c74fd6SRichard Tran Mills @*/ 7389371c9d4SSatish Balay PetscErrorCode MatGetBindingPropagates(Mat A, PetscBool *flg) { 739e9c74fd6SRichard Tran Mills PetscFunctionBegin; 740e9c74fd6SRichard Tran Mills PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 741e9c74fd6SRichard Tran Mills PetscValidBoolPointer(flg, 2); 742e9c74fd6SRichard Tran Mills #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) 743e9c74fd6SRichard Tran Mills *flg = A->bindingpropagates; 744e9c74fd6SRichard Tran Mills #else 745e9c74fd6SRichard Tran Mills *flg = PETSC_FALSE; 746e9c74fd6SRichard Tran Mills #endif 747e9c74fd6SRichard Tran Mills PetscFunctionReturn(0); 748e9c74fd6SRichard Tran Mills } 749