xref: /petsc/src/mat/utils/gcreate.c (revision 11a5261e40035b7c793f2783a2ba6c7cd4f3b077)
1af0996ceSBarry Smith #include <petsc/private/matimpl.h> /*I "petscmat.h"  I*/
27807a1faSBarry Smith 
39371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatSetBlockSizes_Default(Mat mat, PetscInt rbs, PetscInt cbs) {
446533700Sstefano_zampini   PetscFunctionBegin;
55c577a9aSstefano_zampini   if (!mat->preallocated) PetscFunctionReturn(0);
6aed4548fSBarry Smith   PetscCheck(mat->rmap->bs <= 0 || mat->rmap->bs == rbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Cannot change row block size %" PetscInt_FMT " to %" PetscInt_FMT, mat->rmap->bs, rbs);
7aed4548fSBarry Smith   PetscCheck(mat->cmap->bs <= 0 || mat->cmap->bs == cbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Cannot change column block size %" PetscInt_FMT " to %" PetscInt_FMT, mat->cmap->bs, cbs);
846533700Sstefano_zampini   PetscFunctionReturn(0);
946533700Sstefano_zampini }
1046533700Sstefano_zampini 
119371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatShift_Basic(Mat Y, PetscScalar a) {
127d68702bSBarry Smith   PetscInt    i, start, end;
137d68702bSBarry Smith   PetscScalar alpha = a;
147d68702bSBarry Smith   PetscBool   prevoption;
157d68702bSBarry Smith 
167d68702bSBarry Smith   PetscFunctionBegin;
179566063dSJacob Faibussowitsch   PetscCall(MatGetOption(Y, MAT_NO_OFF_PROC_ENTRIES, &prevoption));
189566063dSJacob Faibussowitsch   PetscCall(MatSetOption(Y, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
199566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Y, &start, &end));
207d68702bSBarry Smith   for (i = start; i < end; i++) {
2148a46eb9SPierre Jolivet     if (i < Y->cmap->N) PetscCall(MatSetValues(Y, 1, &i, 1, &i, &alpha, ADD_VALUES));
22ab6153dcSStefano Zampini   }
239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Y, MAT_FINAL_ASSEMBLY));
249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Y, MAT_FINAL_ASSEMBLY));
259566063dSJacob Faibussowitsch   PetscCall(MatSetOption(Y, MAT_NO_OFF_PROC_ENTRIES, prevoption));
267d68702bSBarry Smith   PetscFunctionReturn(0);
277d68702bSBarry Smith }
287d68702bSBarry Smith 
2905869f15SSatish Balay /*@
3069dd0797SLois Curfman McInnes    MatCreate - Creates a matrix where the type is determined
31*11a5261eSBarry Smith    from either a call to `MatSetType()` or from the options database
32*11a5261eSBarry Smith    with a call to `MatSetFromOptions()`. The default matrix type is
33*11a5261eSBarry Smith    `MATAIJ`, using the routines `MatCreateSeqAIJ()` or `MatCreateAIJ()`
347e5f4302SBarry Smith    if you do not set a type in the options database. If you never
35*11a5261eSBarry Smith    call `MatSetType()` or `MatSetFromOptions()` it will generate an
36f8ab6608SSatish Balay    error when you try to use the matrix.
3783e1b59cSLois Curfman McInnes 
38d083f849SBarry Smith    Collective
39cb13003dSBarry Smith 
40f69a0ea3SMatthew Knepley    Input Parameter:
41f69a0ea3SMatthew Knepley .  comm - MPI communicator
427807a1faSBarry Smith 
437807a1faSBarry Smith    Output Parameter:
44dc401e71SLois Curfman McInnes .  A - the matrix
45e0b365e2SLois Curfman McInnes 
46273d9f13SBarry Smith    Options Database Keys:
47*11a5261eSBarry Smith +    -mat_type seqaij   - `MATSEQAIJ` type, uses `MatCreateSeqAIJ()`
48*11a5261eSBarry Smith .    -mat_type mpiaij   - `MATMPIAIJ` type, uses `MatCreateAIJ()`
49*11a5261eSBarry Smith .    -mat_type seqdense - `MATSEQDENSE`, uses `MatCreateSeqDense()`
50*11a5261eSBarry Smith .    -mat_type mpidense - `MATMPIDENSE` type, uses `MatCreateDense()`
51*11a5261eSBarry Smith .    -mat_type seqbaij  - `MATSEQBAIJ` type, uses `MatCreateSeqBAIJ()`
52*11a5261eSBarry Smith -    -mat_type mpibaij  - `MATMPIBAIJ` type, uses `MatCreateBAIJ()`
53e0b365e2SLois Curfman McInnes 
5483e1b59cSLois Curfman McInnes    Even More Options Database Keys:
55*11a5261eSBarry Smith    See the manpages for particular formats (e.g., `MatCreateSeqAIJ()`)
5683e1b59cSLois Curfman McInnes    for additional format-specific options.
57e0b365e2SLois Curfman McInnes 
58273d9f13SBarry Smith    Level: beginner
59273d9f13SBarry Smith 
60*11a5261eSBarry Smith `.seealso: `MatCreateSeqAIJ()`, `MatCreateAIJ()`,
61db781477SPatrick Sanan           `MatCreateSeqDense()`, `MatCreateDense()`,
62db781477SPatrick Sanan           `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`,
63db781477SPatrick Sanan           `MatCreateSeqSBAIJ()`, `MatCreateSBAIJ()`,
64db781477SPatrick Sanan           `MatConvert()`
65273d9f13SBarry Smith @*/
669371c9d4SSatish Balay PetscErrorCode MatCreate(MPI_Comm comm, Mat *A) {
67273d9f13SBarry Smith   Mat B;
68273d9f13SBarry Smith 
69273d9f13SBarry Smith   PetscFunctionBegin;
70f69a0ea3SMatthew Knepley   PetscValidPointer(A, 2);
7197f1f81fSBarry Smith 
720298fd71SBarry Smith   *A = NULL;
739566063dSJacob Faibussowitsch   PetscCall(MatInitializePackage());
748ba1e511SMatthew Knepley 
759566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(B, MAT_CLASSID, "Mat", "Matrix", "Mat", comm, MatDestroy, MatView));
769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &B->rmap));
779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &B->cmap));
789566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(VECSTANDARD, &B->defaultvectype));
7926fbe8dcSKarl Rupp 
80b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_UNKNOWN;
81b94d7dedSBarry Smith   B->hermitian                   = PETSC_BOOL3_UNKNOWN;
82b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_UNKNOWN;
83b94d7dedSBarry Smith   B->spd                         = PETSC_BOOL3_UNKNOWN;
84b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_FALSE;
85b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_FALSE;
86b94d7dedSBarry Smith 
8794342113SStefano Zampini   B->congruentlayouts = PETSC_DECIDE;
88273d9f13SBarry Smith   B->preallocated     = PETSC_FALSE;
896f3d89d0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
906f3d89d0SStefano Zampini   B->boundtocpu = PETSC_TRUE;
916f3d89d0SStefano Zampini #endif
92273d9f13SBarry Smith   *A = B;
93273d9f13SBarry Smith   PetscFunctionReturn(0);
94273d9f13SBarry Smith }
95273d9f13SBarry Smith 
96422a814eSBarry Smith /*@
97*11a5261eSBarry Smith    MatSetErrorIfFailure - Causes `Mat` to generate an immediate error, for example a zero pivot, is detected.
98422a814eSBarry Smith 
99*11a5261eSBarry Smith    Logically Collective on mat
100422a814eSBarry Smith 
101422a814eSBarry Smith    Input Parameters:
102*11a5261eSBarry Smith +  mat -  matrix obtained from `MatCreate()`
103*11a5261eSBarry Smith -  flg - `PETSC_TRUE` indicates you want the error generated
104422a814eSBarry Smith 
105422a814eSBarry Smith    Level: advanced
106422a814eSBarry Smith 
107*11a5261eSBarry Smith    Note:
108*11a5261eSBarry Smith    If this flag is not set then the matrix operation will note the error and continue. The error may cause a later `PC` or `KSP` error
109*11a5261eSBarry Smith    or result in a `KSPConvergedReason` indicating the method did not converge.
110*11a5261eSBarry Smith 
111*11a5261eSBarry Smith .seealso: `PCSetErrorIfFailure()`, `KSPConvergedReason`, `SNESConvergedReason`
112422a814eSBarry Smith @*/
1139371c9d4SSatish Balay PetscErrorCode MatSetErrorIfFailure(Mat mat, PetscBool flg) {
114422a814eSBarry Smith   PetscFunctionBegin;
115422a814eSBarry Smith   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
116422a814eSBarry Smith   PetscValidLogicalCollectiveBool(mat, flg, 2);
11784d44b13SHong Zhang   mat->erroriffailure = flg;
118422a814eSBarry Smith   PetscFunctionReturn(0);
119422a814eSBarry Smith }
120422a814eSBarry Smith 
121f69a0ea3SMatthew Knepley /*@
122f69a0ea3SMatthew Knepley   MatSetSizes - Sets the local and global sizes, and checks to determine compatibility
123f69a0ea3SMatthew Knepley 
124f69a0ea3SMatthew Knepley   Collective on Mat
125f69a0ea3SMatthew Knepley 
126f69a0ea3SMatthew Knepley   Input Parameters:
127f69a0ea3SMatthew Knepley +  A - the matrix
128*11a5261eSBarry Smith .  m - number of local rows (or `PETSC_DECIDE`)
129*11a5261eSBarry Smith .  n - number of local columns (or `PETSC_DECIDE`)
130*11a5261eSBarry Smith .  M - number of global rows (or `PETSC_DETERMINE`)
131*11a5261eSBarry Smith -  N - number of global columns (or `PETSC_DETERMINE`)
132f69a0ea3SMatthew Knepley 
133f69a0ea3SMatthew Knepley    Notes:
134*11a5261eSBarry Smith    m (n) and M (N) cannot be both `PETSC_DECIDE`
135*11a5261eSBarry Smith    If one processor calls this with M (N) of `PETSC_DECIDE` then all processors must, otherwise the program will hang.
136f69a0ea3SMatthew Knepley 
137*11a5261eSBarry Smith    If `PETSC_DECIDE` is not used for the arguments 'm' and 'n', then the
138f69a0ea3SMatthew Knepley    user must ensure that they are chosen to be compatible with the
139f69a0ea3SMatthew Knepley    vectors. To do this, one first considers the matrix-vector product
140f69a0ea3SMatthew Knepley    'y = A x'. The 'm' that is used in the above routine must match the
141f69a0ea3SMatthew Knepley    local size used in the vector creation routine VecCreateMPI() for 'y'.
142f69a0ea3SMatthew Knepley    Likewise, the 'n' used must match that used as the local size in
143*11a5261eSBarry Smith    `VecCreateMPI()` for 'x'.
144f69a0ea3SMatthew Knepley 
145f73d5cc4SBarry Smith    You cannot change the sizes once they have been set.
146f73d5cc4SBarry Smith 
147*11a5261eSBarry Smith    The sizes must be set before `MatSetUp()` or MatXXXSetPreallocation() is called.
148f73d5cc4SBarry Smith 
149f69a0ea3SMatthew Knepley   Level: beginner
150f69a0ea3SMatthew Knepley 
151db781477SPatrick Sanan .seealso: `MatGetSize()`, `PetscSplitOwnership()`
152f69a0ea3SMatthew Knepley @*/
1539371c9d4SSatish Balay PetscErrorCode MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) {
154f69a0ea3SMatthew Knepley   PetscFunctionBegin;
1550700a824SBarry Smith   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
156a69c7061SStefano Zampini   PetscValidLogicalCollectiveInt(A, M, 4);
157a69c7061SStefano Zampini   PetscValidLogicalCollectiveInt(A, N, 5);
158aed4548fSBarry Smith   PetscCheck(M <= 0 || m <= M, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local row size %" PetscInt_FMT " cannot be larger than global row size %" PetscInt_FMT, m, M);
159aed4548fSBarry Smith   PetscCheck(N <= 0 || n <= N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local column size %" PetscInt_FMT " cannot be larger than global column size %" PetscInt_FMT, n, N);
1609371c9d4SSatish Balay   PetscCheck((A->rmap->n < 0 || A->rmap->N < 0) || (A->rmap->n == m && (M <= 0 || A->rmap->N == M)), PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change/reset row sizes to %" PetscInt_FMT " local %" PetscInt_FMT " global after previously setting them to %" PetscInt_FMT " local %" PetscInt_FMT " global", m, M,
1619371c9d4SSatish Balay              A->rmap->n, A->rmap->N);
1629371c9d4SSatish Balay   PetscCheck((A->cmap->n < 0 || A->cmap->N < 0) || (A->cmap->n == n && (N <= 0 || A->cmap->N == N)), PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change/reset column sizes to %" PetscInt_FMT " local %" PetscInt_FMT " global after previously setting them to %" PetscInt_FMT " local %" PetscInt_FMT " global", n, N,
1639371c9d4SSatish Balay              A->cmap->n, A->cmap->N);
164d0f46423SBarry Smith   A->rmap->n = m;
165d0f46423SBarry Smith   A->cmap->n = n;
16659cb773eSBarry Smith   A->rmap->N = M > -1 ? M : A->rmap->N;
16759cb773eSBarry Smith   A->cmap->N = N > -1 ? N : A->cmap->N;
168f69a0ea3SMatthew Knepley   PetscFunctionReturn(0);
169f69a0ea3SMatthew Knepley }
170f69a0ea3SMatthew Knepley 
17105869f15SSatish Balay /*@
172273d9f13SBarry Smith    MatSetFromOptions - Creates a matrix where the type is determined
173273d9f13SBarry Smith    from the options database. Generates a parallel MPI matrix if the
174273d9f13SBarry Smith    communicator has more than one processor.  The default matrix type is
175*11a5261eSBarry Smith    `MATAIJ`, using the routines `MatCreateSeqAIJ()` and `MatCreateAIJ()` if
1767e5f4302SBarry Smith    you do not select a type in the options database.
177273d9f13SBarry Smith 
178*11a5261eSBarry Smith    Collective on B
179273d9f13SBarry Smith 
180273d9f13SBarry Smith    Input Parameter:
181273d9f13SBarry Smith .  A - the matrix
182273d9f13SBarry Smith 
183273d9f13SBarry Smith    Options Database Keys:
184*11a5261eSBarry Smith +    -mat_type seqaij   - `MATSEQAIJ` type, uses `MatCreateSeqAIJ()`
185*11a5261eSBarry Smith .    -mat_type mpiaij   - `MATMPIAIJ` type, uses `MatCreateAIJ()`
186*11a5261eSBarry Smith .    -mat_type seqdense - `MATSEQDENSE` type, uses `MatCreateSeqDense()`
187*11a5261eSBarry Smith .    -mat_type mpidense - `MATMPIDENSE`, uses `MatCreateDense()`
188*11a5261eSBarry Smith .    -mat_type seqbaij  - `MATSEQBAIJ`, uses `MatCreateSeqBAIJ()`
189*11a5261eSBarry Smith -    -mat_type mpibaij  - `MATMPIBAIJ`, uses `MatCreateBAIJ()`
190273d9f13SBarry Smith 
191273d9f13SBarry Smith    Even More Options Database Keys:
192*11a5261eSBarry Smith    See the manpages for particular formats (e.g., `MatCreateSeqAIJ()`)
193273d9f13SBarry Smith    for additional format-specific options.
194bd9ce289SLois Curfman McInnes 
1951d69843bSLois Curfman McInnes    Level: beginner
1961d69843bSLois Curfman McInnes 
197db781477SPatrick Sanan .seealso: `MatCreateSeqAIJ(()`, `MatCreateAIJ()`,
198db781477SPatrick Sanan           `MatCreateSeqDense()`, `MatCreateDense()`,
199db781477SPatrick Sanan           `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`,
200db781477SPatrick Sanan           `MatCreateSeqSBAIJ()`, `MatCreateSBAIJ()`,
201db781477SPatrick Sanan           `MatConvert()`
2027807a1faSBarry Smith @*/
2039371c9d4SSatish Balay PetscErrorCode MatSetFromOptions(Mat B) {
204f3be49caSLisandro Dalcin   const char *deft = MATAIJ;
205f3be49caSLisandro Dalcin   char        type[256];
20669df5c0cSJed Brown   PetscBool   flg, set;
20716e04d98SRichard Tran Mills   PetscInt    bind_below = 0;
208dbb450caSBarry Smith 
2093a40ed3dSBarry Smith   PetscFunctionBegin;
2100700a824SBarry Smith   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
211f3be49caSLisandro Dalcin 
212d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)B);
213535b19f3SBarry Smith 
214535b19f3SBarry Smith   if (B->rmap->bs < 0) {
215535b19f3SBarry Smith     PetscInt newbs = -1;
2169566063dSJacob Faibussowitsch     PetscCall(PetscOptionsInt("-mat_block_size", "Set the blocksize used to store the matrix", "MatSetBlockSize", newbs, &newbs, &flg));
217535b19f3SBarry Smith     if (flg) {
2189566063dSJacob Faibussowitsch       PetscCall(PetscLayoutSetBlockSize(B->rmap, newbs));
2199566063dSJacob Faibussowitsch       PetscCall(PetscLayoutSetBlockSize(B->cmap, newbs));
220535b19f3SBarry Smith     }
221535b19f3SBarry Smith   }
222535b19f3SBarry Smith 
2239566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-mat_type", "Matrix type", "MatSetType", MatList, deft, type, 256, &flg));
224273d9f13SBarry Smith   if (flg) {
2259566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, type));
226f3be49caSLisandro Dalcin   } else if (!((PetscObject)B)->type_name) {
2279566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, deft));
228273d9f13SBarry Smith   }
229f3be49caSLisandro Dalcin 
2309566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_is_symmetric", "Checks if mat is symmetric on MatAssemblyEnd()", "MatIsSymmetric", &B->checksymmetryonassembly));
2319566063dSJacob Faibussowitsch   PetscCall(PetscOptionsReal("-mat_is_symmetric", "Checks if mat is symmetric on MatAssemblyEnd()", "MatIsSymmetric", B->checksymmetrytol, &B->checksymmetrytol, NULL));
2329566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_null_space_test", "Checks if provided null space is correct in MatAssemblyEnd()", "MatSetNullSpaceTest", B->checknullspaceonassembly, &B->checknullspaceonassembly, NULL));
2339566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_error_if_failure", "Generate an error if an error occurs when factoring the matrix", "MatSetErrorIfFailure", B->erroriffailure, &B->erroriffailure, NULL));
234840d65ccSBarry Smith 
235dbbe0bcdSBarry Smith   PetscTryTypeMethod(B, setfromoptions, PetscOptionsObject);
236f3be49caSLisandro Dalcin 
23769df5c0cSJed Brown   flg = PETSC_FALSE;
2389566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_new_nonzero_location_err", "Generate an error if new nonzeros are created in the matrix structure (useful to test preallocation)", "MatSetOption", flg, &flg, &set));
2399566063dSJacob Faibussowitsch   if (set) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, flg));
24069df5c0cSJed Brown   flg = PETSC_FALSE;
2419566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_new_nonzero_allocation_err", "Generate an error if new nonzeros are allocated in the matrix structure (useful to test preallocation)", "MatSetOption", flg, &flg, &set));
2429566063dSJacob Faibussowitsch   if (set) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, flg));
243478db826SMatthew G. Knepley   flg = PETSC_FALSE;
2449566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_ignore_zero_entries", "For AIJ/IS matrices this will stop zero values from creating a zero location in the matrix", "MatSetOption", flg, &flg, &set));
2459566063dSJacob Faibussowitsch   if (set) PetscCall(MatSetOption(B, MAT_IGNORE_ZERO_ENTRIES, flg));
24669df5c0cSJed Brown 
2471a2c6b5cSJunchao Zhang   flg = PETSC_FALSE;
2489566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_form_explicit_transpose", "Hint to form an explicit transpose for operations like MatMultTranspose", "MatSetOption", flg, &flg, &set));
2499566063dSJacob Faibussowitsch   if (set) PetscCall(MatSetOption(B, MAT_FORM_EXPLICIT_TRANSPOSE, flg));
2501a2c6b5cSJunchao Zhang 
25116e04d98SRichard Tran Mills   /* Bind to CPU if below a user-specified size threshold.
25216e04d98SRichard Tran Mills    * This perhaps belongs in the options for the GPU Mat types, but MatBindToCPU() does nothing when called on non-GPU types,
25316e04d98SRichard Tran Mills    * and putting it here makes is more maintainable than duplicating this for all. */
2549566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-mat_bind_below", "Set the size threshold (in local rows) below which the Mat is bound to the CPU", "MatBindToCPU", bind_below, &bind_below, &flg));
25548a46eb9SPierre Jolivet   if (flg && B->rmap->n < bind_below) PetscCall(MatBindToCPU(B, PETSC_TRUE));
25616e04d98SRichard Tran Mills 
2575d973c19SBarry Smith   /* process any options handlers added with PetscObjectAddOptionsHandler() */
258dbbe0bcdSBarry Smith   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)B, PetscOptionsObject));
259d0609cedSBarry Smith   PetscOptionsEnd();
2603a40ed3dSBarry Smith   PetscFunctionReturn(0);
2617807a1faSBarry Smith }
2627807a1faSBarry Smith 
263987010e7SBarry Smith /*@C
264*11a5261eSBarry Smith    MatXAIJSetPreallocation - set preallocation for serial and parallel `MATAIJ`, `MATBAIJ`, and `MATSBAIJ` matrices and their unassembled versions.
26563562e91SJed Brown 
266*11a5261eSBarry Smith    Collective on A
26763562e91SJed Brown 
2684165533cSJose E. Roman    Input Parameters:
26963562e91SJed Brown +  A - matrix being preallocated
27063562e91SJed Brown .  bs - block size
27141319c1dSStefano Zampini .  dnnz - number of nonzero column blocks per block row of diagonal part of parallel matrix
27241319c1dSStefano Zampini .  onnz - number of nonzero column blocks per block row of off-diagonal part of parallel matrix
27341319c1dSStefano Zampini .  dnnzu - number of nonzero column blocks per block row of upper-triangular part of diagonal part of parallel matrix
27441319c1dSStefano Zampini -  onnzu - number of nonzero column blocks per block row of upper-triangular part of off-diagonal part of parallel matrix
27563562e91SJed Brown 
27663562e91SJed Brown    Level: beginner
27763562e91SJed Brown 
278db781477SPatrick Sanan .seealso: `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`,
279db781477SPatrick Sanan           `PetscSplitOwnership()`
28063562e91SJed Brown @*/
2819371c9d4SSatish Balay PetscErrorCode MatXAIJSetPreallocation(Mat A, PetscInt bs, const PetscInt dnnz[], const PetscInt onnz[], const PetscInt dnnzu[], const PetscInt onnzu[]) {
28241319c1dSStefano Zampini   PetscInt cbs;
28363562e91SJed Brown   void (*aij)(void);
284e8bd9bafSStefano Zampini   void (*is)(void);
285990279feSStefano Zampini   void (*hyp)(void) = NULL;
28663562e91SJed Brown 
28763562e91SJed Brown   PetscFunctionBegin;
28841319c1dSStefano Zampini   if (bs != PETSC_DECIDE) { /* don't mess with an already set block size */
2899566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(A, bs));
29041319c1dSStefano Zampini   }
2919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->rmap));
2929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->cmap));
2939566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(A, &bs, &cbs));
29441319c1dSStefano Zampini   /* these routines assumes bs == cbs, this should be checked somehow */
2959566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(A, bs, 0, dnnz));
2969566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(A, bs, 0, dnnz, 0, onnz));
2979566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(A, bs, 0, dnnzu));
2989566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(A, bs, 0, dnnzu, 0, onnzu));
29963562e91SJed Brown   /*
300e8bd9bafSStefano Zampini     In general, we have to do extra work to preallocate for scalar (AIJ) or unassembled (IS) matrices so we check whether it will do any
30163562e91SJed Brown     good before going on with it.
30263562e91SJed Brown   */
3039566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJSetPreallocation_C", &aij));
3049566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatISSetPreallocation_C", &is));
305990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
3069566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatHYPRESetPreallocation_C", &hyp));
307990279feSStefano Zampini #endif
30848a46eb9SPierre Jolivet   if (!aij && !is && !hyp) PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJSetPreallocation_C", &aij));
309990279feSStefano Zampini   if (aij || is || hyp) {
31041319c1dSStefano Zampini     if (bs == cbs && bs == 1) {
3119566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJSetPreallocation(A, 0, dnnz));
3129566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJSetPreallocation(A, 0, dnnz, 0, onnz));
3139566063dSJacob Faibussowitsch       PetscCall(MatISSetPreallocation(A, 0, dnnz, 0, onnz));
314990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
3159566063dSJacob Faibussowitsch       PetscCall(MatHYPRESetPreallocation(A, 0, dnnz, 0, onnz));
316990279feSStefano Zampini #endif
3173e5f4774SJed Brown     } else { /* Convert block-row precallocation to scalar-row */
31863562e91SJed Brown       PetscInt i, m, *sdnnz, *sonnz;
3199566063dSJacob Faibussowitsch       PetscCall(MatGetLocalSize(A, &m, NULL));
3209566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2((!!dnnz) * m, &sdnnz, (!!onnz) * m, &sonnz));
321dec54756SJed Brown       for (i = 0; i < m; i++) {
32241319c1dSStefano Zampini         if (dnnz) sdnnz[i] = dnnz[i / bs] * cbs;
32341319c1dSStefano Zampini         if (onnz) sonnz[i] = onnz[i / bs] * cbs;
32463562e91SJed Brown       }
3259566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJSetPreallocation(A, 0, dnnz ? sdnnz : NULL));
3269566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJSetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL));
3279566063dSJacob Faibussowitsch       PetscCall(MatISSetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL));
328990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
3299566063dSJacob Faibussowitsch       PetscCall(MatHYPRESetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL));
330990279feSStefano Zampini #endif
3319566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sdnnz, sonnz));
33263562e91SJed Brown     }
33363562e91SJed Brown   }
33463562e91SJed Brown   PetscFunctionReturn(0);
33563562e91SJed Brown }
33663562e91SJed Brown 
337273d9f13SBarry Smith /*
338eb6b5d47SBarry Smith         Merges some information from Cs header to A; the C object is then destroyed
339d0f46423SBarry Smith 
340d0f46423SBarry Smith         This is somewhat different from MatHeaderReplace() it would be nice to merge the code
341273d9f13SBarry Smith */
3429371c9d4SSatish Balay PetscErrorCode MatHeaderMerge(Mat A, Mat *C) {
343d44834fbSBarry Smith   PetscInt         refct;
34473107ff1SLisandro Dalcin   PetscOps         Abops;
34573107ff1SLisandro Dalcin   struct _MatOps   Aops;
3464768301cSVaclav Hapla   char            *mtype, *mname, *mprefix;
3474222ddf1SHong Zhang   Mat_Product     *product;
34833e6eea4SJose E. Roman   Mat_Redundant   *redundant;
349d4a972cbSStefano Zampini   PetscObjectState state;
350273d9f13SBarry Smith 
351273d9f13SBarry Smith   PetscFunctionBegin;
3521dc04de0SStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
3531dc04de0SStefano Zampini   PetscValidHeaderSpecific(*C, MAT_CLASSID, 2);
3541dc04de0SStefano Zampini   if (A == *C) PetscFunctionReturn(0);
3551dc04de0SStefano Zampini   PetscCheckSameComm(A, 1, *C, 2);
356273d9f13SBarry Smith   /* save the parts of A we need */
35773107ff1SLisandro Dalcin   Abops     = ((PetscObject)A)->bops[0];
35873107ff1SLisandro Dalcin   Aops      = A->ops[0];
3597adad957SLisandro Dalcin   refct     = ((PetscObject)A)->refct;
3605c9eb25fSBarry Smith   mtype     = ((PetscObject)A)->type_name;
3615c9eb25fSBarry Smith   mname     = ((PetscObject)A)->name;
362d4a972cbSStefano Zampini   state     = ((PetscObject)A)->state;
3634768301cSVaclav Hapla   mprefix   = ((PetscObject)A)->prefix;
3644222ddf1SHong Zhang   product   = A->product;
36533e6eea4SJose E. Roman   redundant = A->redundant;
36630735b05SKris Buschelman 
3675c9eb25fSBarry Smith   /* zero these so the destroy below does not free them */
368f4259b30SLisandro Dalcin   ((PetscObject)A)->type_name = NULL;
369f4259b30SLisandro Dalcin   ((PetscObject)A)->name      = NULL;
3705c9eb25fSBarry Smith 
371dbbe0bcdSBarry Smith   /*
372dbbe0bcdSBarry Smith      free all the interior data structures from mat
373dbbe0bcdSBarry Smith      cannot use PetscUseTypeMethod(A,destroy); because compiler
374dbbe0bcdSBarry Smith      thinks it may print NULL type_name and name
375dbbe0bcdSBarry Smith   */
376dbbe0bcdSBarry Smith   PetscTryTypeMethod(A, destroy);
3777c99f97cSSatish Balay 
3789566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->defaultvectype));
3799566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&A->rmap));
3809566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&A->cmap));
3819566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDestroy(&((PetscObject)A)->qlist));
3829566063dSJacob Faibussowitsch   PetscCall(PetscObjectListDestroy(&((PetscObject)A)->olist));
3839566063dSJacob Faibussowitsch   PetscCall(PetscComposedQuantitiesDestroy((PetscObject)A));
384273d9f13SBarry Smith 
385273d9f13SBarry Smith   /* copy C over to A */
38626cc229bSBarry Smith   PetscCall(PetscFree(A->factorprefix));
3879566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(A, *C, sizeof(struct _p_Mat)));
388273d9f13SBarry Smith 
389273d9f13SBarry Smith   /* return the parts of A we saved */
39073107ff1SLisandro Dalcin   ((PetscObject)A)->bops[0]   = Abops;
39173107ff1SLisandro Dalcin   A->ops[0]                   = Aops;
3927adad957SLisandro Dalcin   ((PetscObject)A)->refct     = refct;
3937adad957SLisandro Dalcin   ((PetscObject)A)->type_name = mtype;
3947adad957SLisandro Dalcin   ((PetscObject)A)->name      = mname;
3954768301cSVaclav Hapla   ((PetscObject)A)->prefix    = mprefix;
396d4a972cbSStefano Zampini   ((PetscObject)A)->state     = state + 1;
3974222ddf1SHong Zhang   A->product                  = product;
39833e6eea4SJose E. Roman   A->redundant                = redundant;
399273d9f13SBarry Smith 
4005c9eb25fSBarry Smith   /* since these two are copied into A we do not want them destroyed in C */
401f4259b30SLisandro Dalcin   ((PetscObject)*C)->qlist = NULL;
402f4259b30SLisandro Dalcin   ((PetscObject)*C)->olist = NULL;
40326fbe8dcSKarl Rupp 
4049566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(C));
405273d9f13SBarry Smith   PetscFunctionReturn(0);
406273d9f13SBarry Smith }
4078ab5b326SKris Buschelman /*
408eb6b5d47SBarry Smith         Replace A's header with that of C; the C object is then destroyed
409d0f46423SBarry Smith 
410eb6b5d47SBarry Smith         This is essentially code moved from MatDestroy()
411eb6b5d47SBarry Smith 
412eb6b5d47SBarry Smith         This is somewhat different from MatHeaderMerge() it would be nice to merge the code
413b30237c6SBarry Smith 
414b30237c6SBarry Smith         Used in DM hence is declared PETSC_EXTERN
4158ab5b326SKris Buschelman */
4169371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat A, Mat *C) {
41727b31e29SJed Brown   PetscInt         refct;
418fefd9316SJose E. Roman   PetscObjectState state;
41928be2f97SBarry Smith   struct _p_Mat    buffer;
42081fa06acSBarry Smith   MatStencilInfo   stencil;
4218ab5b326SKris Buschelman 
4228ab5b326SKris Buschelman   PetscFunctionBegin;
42327b31e29SJed Brown   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
42428be2f97SBarry Smith   PetscValidHeaderSpecific(*C, MAT_CLASSID, 2);
42528be2f97SBarry Smith   if (A == *C) PetscFunctionReturn(0);
42628be2f97SBarry Smith   PetscCheckSameComm(A, 1, *C, 2);
427aed4548fSBarry Smith   PetscCheck(((PetscObject)*C)->refct == 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "Object C has refct %" PetscInt_FMT " > 1, would leave hanging reference", ((PetscObject)*C)->refct);
4286d7c1e57SBarry Smith 
42928be2f97SBarry Smith   /* swap C and A */
43027b31e29SJed Brown   refct   = ((PetscObject)A)->refct;
431fefd9316SJose E. Roman   state   = ((PetscObject)A)->state;
43281fa06acSBarry Smith   stencil = A->stencil;
4339566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(&buffer, A, sizeof(struct _p_Mat)));
4349566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(A, *C, sizeof(struct _p_Mat)));
4359566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(*C, &buffer, sizeof(struct _p_Mat)));
43627b31e29SJed Brown   ((PetscObject)A)->refct = refct;
437fefd9316SJose E. Roman   ((PetscObject)A)->state = state + 1;
43881fa06acSBarry Smith   A->stencil              = stencil;
43926fbe8dcSKarl Rupp 
440c32d4117SBarry Smith   ((PetscObject)*C)->refct = 1;
4419566063dSJacob Faibussowitsch   PetscCall(MatShellSetOperation(*C, MATOP_DESTROY, (void (*)(void))NULL));
4429566063dSJacob Faibussowitsch   PetscCall(MatDestroy(C));
4438ab5b326SKris Buschelman   PetscFunctionReturn(0);
4448ab5b326SKris Buschelman }
445e7e92044SBarry Smith 
446e7e92044SBarry Smith /*@
447b470e4b4SRichard Tran Mills      MatBindToCPU - marks a matrix to temporarily stay on the CPU and perform computations on the CPU
448e7e92044SBarry Smith 
449*11a5261eSBarry Smith    Logically collective on A
4502216c58aSStefano Zampini 
451e7e92044SBarry Smith    Input Parameters:
452e7e92044SBarry Smith +   A - the matrix
453*11a5261eSBarry Smith -   flg - bind to the CPU if value of `PETSC_TRUE`
454e7e92044SBarry Smith 
45590ea27d8SSatish Balay    Level: intermediate
4562216c58aSStefano Zampini 
457db781477SPatrick Sanan .seealso: `MatBoundToCPU()`
458e7e92044SBarry Smith @*/
4599371c9d4SSatish Balay PetscErrorCode MatBindToCPU(Mat A, PetscBool flg) {
4607d871021SStefano Zampini   PetscFunctionBegin;
4612ffa8ee7SStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4622ffa8ee7SStefano Zampini   PetscValidLogicalCollectiveBool(A, flg, 2);
4632216c58aSStefano Zampini #if defined(PETSC_HAVE_DEVICE)
464b470e4b4SRichard Tran Mills   if (A->boundtocpu == flg) PetscFunctionReturn(0);
465b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
466dbbe0bcdSBarry Smith   PetscTryTypeMethod(A, bindtocpu, flg);
4672216c58aSStefano Zampini #endif
468e7e92044SBarry Smith   PetscFunctionReturn(0);
4692216c58aSStefano Zampini }
4702216c58aSStefano Zampini 
4712216c58aSStefano Zampini /*@
4722216c58aSStefano Zampini      MatBoundToCPU - query if a matrix is bound to the CPU
4732216c58aSStefano Zampini 
4742216c58aSStefano Zampini    Input Parameter:
4752216c58aSStefano Zampini .   A - the matrix
4762216c58aSStefano Zampini 
4772216c58aSStefano Zampini    Output Parameter:
4782216c58aSStefano Zampini .   flg - the logical flag
4792216c58aSStefano Zampini 
4802216c58aSStefano Zampini    Level: intermediate
4812216c58aSStefano Zampini 
482db781477SPatrick Sanan .seealso: `MatBindToCPU()`
4832216c58aSStefano Zampini @*/
4849371c9d4SSatish Balay PetscErrorCode MatBoundToCPU(Mat A, PetscBool *flg) {
4852ffa8ee7SStefano Zampini   PetscFunctionBegin;
4862ffa8ee7SStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
487dadcf809SJacob Faibussowitsch   PetscValidBoolPointer(flg, 2);
4882216c58aSStefano Zampini #if defined(PETSC_HAVE_DEVICE)
4892216c58aSStefano Zampini   *flg = A->boundtocpu;
4902216c58aSStefano Zampini #else
4912216c58aSStefano Zampini   *flg = PETSC_TRUE;
4927d871021SStefano Zampini #endif
4932216c58aSStefano Zampini   PetscFunctionReturn(0);
494e7e92044SBarry Smith }
4957e8381f9SStefano Zampini 
4969371c9d4SSatish Balay PetscErrorCode MatSetValuesCOO_Basic(Mat A, const PetscScalar coo_v[], InsertMode imode) {
4977e8381f9SStefano Zampini   IS              is_coo_i, is_coo_j;
4987e8381f9SStefano Zampini   const PetscInt *coo_i, *coo_j;
4997e8381f9SStefano Zampini   PetscInt        n, n_i, n_j;
5007e8381f9SStefano Zampini   PetscScalar     zero = 0.;
5017e8381f9SStefano Zampini 
5027e8381f9SStefano Zampini   PetscFunctionBegin;
5039566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_coo_i", (PetscObject *)&is_coo_i));
5049566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_coo_j", (PetscObject *)&is_coo_j));
50528b400f6SJacob Faibussowitsch   PetscCheck(is_coo_i, PetscObjectComm((PetscObject)A), PETSC_ERR_COR, "Missing coo_i IS");
50628b400f6SJacob Faibussowitsch   PetscCheck(is_coo_j, PetscObjectComm((PetscObject)A), PETSC_ERR_COR, "Missing coo_j IS");
5079566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(is_coo_i, &n_i));
5089566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(is_coo_j, &n_j));
50908401ef6SPierre Jolivet   PetscCheck(n_i == n_j, PETSC_COMM_SELF, PETSC_ERR_COR, "Wrong local size %" PetscInt_FMT " != %" PetscInt_FMT, n_i, n_j);
5109566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(is_coo_i, &coo_i));
5119566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(is_coo_j, &coo_j));
51248a46eb9SPierre Jolivet   if (imode != ADD_VALUES) PetscCall(MatZeroEntries(A));
51348a46eb9SPierre Jolivet   for (n = 0; n < n_i; n++) PetscCall(MatSetValue(A, coo_i[n], coo_j[n], coo_v ? coo_v[n] : zero, ADD_VALUES));
5149566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(is_coo_i, &coo_i));
5159566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(is_coo_j, &coo_j));
5167e8381f9SStefano Zampini   PetscFunctionReturn(0);
5177e8381f9SStefano Zampini }
5187e8381f9SStefano Zampini 
5199371c9d4SSatish Balay PetscErrorCode MatSetPreallocationCOO_Basic(Mat A, PetscCount ncoo, const PetscInt coo_i[], const PetscInt coo_j[]) {
5207e8381f9SStefano Zampini   Mat         preallocator;
5217e8381f9SStefano Zampini   IS          is_coo_i, is_coo_j;
5227e8381f9SStefano Zampini   PetscScalar zero = 0.0;
5237e8381f9SStefano Zampini 
5247e8381f9SStefano Zampini   PetscFunctionBegin;
5259566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->rmap));
5269566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->cmap));
5279566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &preallocator));
5289566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
5299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
5309566063dSJacob Faibussowitsch   PetscCall(MatSetLayouts(preallocator, A->rmap, A->cmap));
5319566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
53248a46eb9SPierre Jolivet   for (PetscCount n = 0; n < ncoo; n++) PetscCall(MatSetValue(preallocator, coo_i[n], coo_j[n], zero, INSERT_VALUES));
5339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
5349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
5359566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, A));
5369566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
5372c71b3e2SJacob Faibussowitsch   PetscCheck(ncoo <= PETSC_MAX_INT, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ncoo %" PetscCount_FMT " overflowed PetscInt; configure --with-64-bit-indices or request support", ncoo);
5389566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncoo, coo_i, PETSC_COPY_VALUES, &is_coo_i));
5399566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncoo, coo_j, PETSC_COPY_VALUES, &is_coo_j));
5409566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_coo_i", (PetscObject)is_coo_i));
5419566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_coo_j", (PetscObject)is_coo_j));
5429566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&is_coo_i));
5439566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&is_coo_j));
5447e8381f9SStefano Zampini   PetscFunctionReturn(0);
5457e8381f9SStefano Zampini }
5467e8381f9SStefano Zampini 
54756856777SBarry Smith /*@C
548c3dd2894SJed Brown    MatSetPreallocationCOO - set preallocation for matrices using a coordinate format of the entries with global indices
5497e8381f9SStefano Zampini 
550*11a5261eSBarry Smith    Collective on A
5517e8381f9SStefano Zampini 
5524165533cSJose E. Roman    Input Parameters:
5537e8381f9SStefano Zampini +  A - matrix being preallocated
55442550becSJunchao Zhang .  ncoo - number of entries
5557e8381f9SStefano Zampini .  coo_i - row indices
5567e8381f9SStefano Zampini -  coo_j - column indices
5577e8381f9SStefano Zampini 
5587e8381f9SStefano Zampini    Level: beginner
5597e8381f9SStefano Zampini 
560394ed5ebSJunchao Zhang    Notes:
561e8729f6fSJunchao Zhang    The indices coo_i and coo_j may be modified within this function. The caller should not rely on them
562e8729f6fSJunchao Zhang    having any specific value after this function returns. The arrays can be freed or reused immediately
563e8729f6fSJunchao Zhang    after this function returns.
564e8729f6fSJunchao Zhang 
565*11a5261eSBarry Smith    Entries can be repeated, see `MatSetValuesCOO()`. Entries with negative row or column indices are allowed
566*11a5261eSBarry Smith    but will be ignored. The corresponding entries in `MatSetValuesCOO()` will be ignored too. Remote entries
567394ed5ebSJunchao Zhang    are allowed and will be properly added or inserted to the matrix, unless the matrix option MAT_IGNORE_OFF_PROC_ENTRIES
568*11a5261eSBarry Smith    is set, in which case remote entries are ignored, or `MAT_NO_OFF_PROC_ENTRIES` is set, in which case an error will be generated.
5697e8381f9SStefano Zampini 
570db781477SPatrick Sanan .seealso: `MatSetValuesCOO()`, `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`, `MatSetPreallocationCOOLocal()`, `DMSetMatrixPreallocateSkip()`
5717e8381f9SStefano Zampini @*/
5729371c9d4SSatish Balay PetscErrorCode MatSetPreallocationCOO(Mat A, PetscCount ncoo, PetscInt coo_i[], PetscInt coo_j[]) {
57382a78a4eSJed Brown   PetscErrorCode (*f)(Mat, PetscCount, const PetscInt[], const PetscInt[]) = NULL;
5747e8381f9SStefano Zampini 
5757e8381f9SStefano Zampini   PetscFunctionBegin;
5767e8381f9SStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
5777e8381f9SStefano Zampini   PetscValidType(A, 1);
5787e8381f9SStefano Zampini   if (ncoo) PetscValidIntPointer(coo_i, 3);
5797e8381f9SStefano Zampini   if (ncoo) PetscValidIntPointer(coo_j, 4);
5809566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->rmap));
5819566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->cmap));
5829566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetPreallocationCOO_C", &f));
583cbc6b225SStefano Zampini 
5849566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_PreallCOO, A, 0, 0, 0));
5857e8381f9SStefano Zampini   if (f) {
5869566063dSJacob Faibussowitsch     PetscCall((*f)(A, ncoo, coo_i, coo_j));
5877e8381f9SStefano Zampini   } else { /* allow fallback, very slow */
5889566063dSJacob Faibussowitsch     PetscCall(MatSetPreallocationCOO_Basic(A, ncoo, coo_i, coo_j));
5897e8381f9SStefano Zampini   }
5909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_PreallCOO, A, 0, 0, 0));
5916834774dSStefano Zampini   A->preallocated = PETSC_TRUE;
592cbc6b225SStefano Zampini   A->nonzerostate++;
5937e8381f9SStefano Zampini   PetscFunctionReturn(0);
5947e8381f9SStefano Zampini }
5957e8381f9SStefano Zampini 
59656856777SBarry Smith /*@C
597c3dd2894SJed Brown    MatSetPreallocationCOOLocal - set preallocation for matrices using a coordinate format of the entries with local indices
598c3dd2894SJed Brown 
599*11a5261eSBarry Smith    Collective on A
600c3dd2894SJed Brown 
601c3dd2894SJed Brown    Input Parameters:
602c3dd2894SJed Brown +  A - matrix being preallocated
603c3dd2894SJed Brown .  ncoo - number of entries
604c3dd2894SJed Brown .  coo_i - row indices (local numbering; may be modified)
605c3dd2894SJed Brown -  coo_j - column indices (local numbering; may be modified)
606c3dd2894SJed Brown 
607c3dd2894SJed Brown    Level: beginner
608c3dd2894SJed Brown 
609c3dd2894SJed Brown    Notes:
610*11a5261eSBarry Smith    The local indices are translated using the local to global mapping, thus `MatSetLocalToGlobalMapping()` must have been
611*11a5261eSBarry Smith    called prior to this function. For matrices created with `DMCreateMatrix()` the local to global mapping is often already provided.
612c3dd2894SJed Brown 
613c3dd2894SJed Brown    The indices coo_i and coo_j may be modified within this function. They might be translated to corresponding global
614735d7f90SBarry Smith    indices, but the caller should not rely on them having any specific value after this function returns. The arrays
615735d7f90SBarry Smith    can be freed or reused immediately after this function returns.
616c3dd2894SJed Brown 
617*11a5261eSBarry Smith    Entries can be repeated, see `MatSetValuesCOO()`. Entries with negative row or column indices are allowed
618*11a5261eSBarry Smith    but will be ignored. The corresponding entries in `MatSetValuesCOO()` will be ignored too. Remote entries
619394ed5ebSJunchao Zhang    are allowed and will be properly added or inserted to the matrix.
620c3dd2894SJed Brown 
621db781477SPatrick Sanan .seealso: `MatSetValuesCOO()`, `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`, `MatSetPreallocationCOO()`, `DMSetMatrixPreallocateSkip()`
622c3dd2894SJed Brown @*/
6239371c9d4SSatish Balay PetscErrorCode MatSetPreallocationCOOLocal(Mat A, PetscCount ncoo, PetscInt coo_i[], PetscInt coo_j[]) {
6246834774dSStefano Zampini   PetscErrorCode (*f)(Mat, PetscCount, PetscInt[], PetscInt[]) = NULL;
625c3dd2894SJed Brown 
626c3dd2894SJed Brown   PetscFunctionBegin;
627c3dd2894SJed Brown   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
628c3dd2894SJed Brown   PetscValidType(A, 1);
629c3dd2894SJed Brown   if (ncoo) PetscValidIntPointer(coo_i, 3);
630c3dd2894SJed Brown   if (ncoo) PetscValidIntPointer(coo_j, 4);
6316834774dSStefano Zampini   PetscCheck(ncoo <= PETSC_MAX_INT, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ncoo %" PetscCount_FMT " overflowed PetscInt; configure --with-64-bit-indices or request support", ncoo);
6329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->rmap));
6339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->cmap));
634cbc6b225SStefano Zampini 
6359566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetPreallocationCOOLocal_C", &f));
6366834774dSStefano Zampini   if (f) {
6379566063dSJacob Faibussowitsch     PetscCall((*f)(A, ncoo, coo_i, coo_j));
638cbc6b225SStefano Zampini     A->nonzerostate++;
6396834774dSStefano Zampini   } else {
640cbc6b225SStefano Zampini     ISLocalToGlobalMapping ltog_row, ltog_col;
6419566063dSJacob Faibussowitsch     PetscCall(MatGetLocalToGlobalMapping(A, &ltog_row, &ltog_col));
6429566063dSJacob Faibussowitsch     if (ltog_row) PetscCall(ISLocalToGlobalMappingApply(ltog_row, ncoo, coo_i, coo_i));
6439566063dSJacob Faibussowitsch     if (ltog_col) PetscCall(ISLocalToGlobalMappingApply(ltog_col, ncoo, coo_j, coo_j));
6449566063dSJacob Faibussowitsch     PetscCall(MatSetPreallocationCOO(A, ncoo, coo_i, coo_j));
6456834774dSStefano Zampini   }
6466834774dSStefano Zampini   A->preallocated = PETSC_TRUE;
647c3dd2894SJed Brown   PetscFunctionReturn(0);
648c3dd2894SJed Brown }
649c3dd2894SJed Brown 
650c3dd2894SJed Brown /*@
651*11a5261eSBarry Smith    MatSetValuesCOO - set values at once in a matrix preallocated using `MatSetPreallocationCOO()`
6527e8381f9SStefano Zampini 
653*11a5261eSBarry Smith    Collective on A
6547e8381f9SStefano Zampini 
6554165533cSJose E. Roman    Input Parameters:
6567e8381f9SStefano Zampini +  A - matrix being preallocated
657bfcc3627SStefano Zampini .  coo_v - the matrix values (can be NULL)
6587e8381f9SStefano Zampini -  imode - the insert mode
6597e8381f9SStefano Zampini 
6607e8381f9SStefano Zampini    Level: beginner
6617e8381f9SStefano Zampini 
662*11a5261eSBarry Smith    Notes:
663*11a5261eSBarry Smith    The values must follow the order of the indices prescribed with `MatSetPreallocationCOO()` or `MatSetPreallocationCOOLocal()`.
664*11a5261eSBarry Smith 
665735d7f90SBarry Smith           When repeated entries are specified in the COO indices the coo_v values are first properly summed, regardless of the value of imode.
666*11a5261eSBarry Smith           The imode flag indicates if coo_v must be added to the current values of the matrix (`ADD_VALUES`) or overwritten (`INSERT_VALUES`).
667*11a5261eSBarry Smith 
668*11a5261eSBarry Smith           `MatAssemblyBegin()` and `MatAssemblyEnd()` do not need to be called after this routine. It automatically handles the assembly process.
6697e8381f9SStefano Zampini 
670db781477SPatrick Sanan .seealso: `MatSetPreallocationCOO()`, `MatSetPreallocationCOOLocal()`, `InsertMode`, `INSERT_VALUES`, `ADD_VALUES`
6717e8381f9SStefano Zampini @*/
6729371c9d4SSatish Balay PetscErrorCode MatSetValuesCOO(Mat A, const PetscScalar coo_v[], InsertMode imode) {
6737e8381f9SStefano Zampini   PetscErrorCode (*f)(Mat, const PetscScalar[], InsertMode) = NULL;
6747e8381f9SStefano Zampini 
6757e8381f9SStefano Zampini   PetscFunctionBegin;
6767e8381f9SStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
6777e8381f9SStefano Zampini   PetscValidType(A, 1);
6787e8381f9SStefano Zampini   MatCheckPreallocated(A, 1);
679bfcc3627SStefano Zampini   PetscValidLogicalCollectiveEnum(A, imode, 3);
6809566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetValuesCOO_C", &f));
6819566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetVCOO, A, 0, 0, 0));
6827e8381f9SStefano Zampini   if (f) {
6839566063dSJacob Faibussowitsch     PetscCall((*f)(A, coo_v, imode));
6847e8381f9SStefano Zampini   } else { /* allow fallback */
6859566063dSJacob Faibussowitsch     PetscCall(MatSetValuesCOO_Basic(A, coo_v, imode));
6867e8381f9SStefano Zampini   }
6879566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetVCOO, A, 0, 0, 0));
6889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
6899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
6907e8381f9SStefano Zampini   PetscFunctionReturn(0);
6917e8381f9SStefano Zampini }
69265a9ecf2SRichard Tran Mills 
69365a9ecf2SRichard Tran Mills /*@
69465a9ecf2SRichard Tran Mills    MatSetBindingPropagates - Sets whether the state of being bound to the CPU for a GPU matrix type propagates to child and some other associated objects
69565a9ecf2SRichard Tran Mills 
69665a9ecf2SRichard Tran Mills    Input Parameters:
69765a9ecf2SRichard Tran Mills +  A - the matrix
69865a9ecf2SRichard Tran Mills -  flg - flag indicating whether the boundtocpu flag should be propagated
69965a9ecf2SRichard Tran Mills 
70065a9ecf2SRichard Tran Mills    Level: developer
70165a9ecf2SRichard Tran Mills 
70265a9ecf2SRichard Tran Mills    Notes:
70365a9ecf2SRichard Tran Mills    If the value of flg is set to true, the following will occur:
70465a9ecf2SRichard Tran Mills 
705*11a5261eSBarry Smith    `MatCreateSubMatrices()` and `MatCreateRedundantMatrix()` will bind created matrices to CPU if the input matrix is bound to the CPU.
706*11a5261eSBarry Smith 
707*11a5261eSBarry Smith    `MatCreateVecs()` will bind created vectors to CPU if the input matrix is bound to the CPU.
70865a9ecf2SRichard Tran Mills    The bindingpropagates flag itself is also propagated by the above routines.
70965a9ecf2SRichard Tran Mills 
710*11a5261eSBarry Smith    Developer Note:
711*11a5261eSBarry Smith    If the fine-scale `DMDA `has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()`
71265a9ecf2SRichard Tran Mills    on the restriction/interpolation operator to set the bindingpropagates flag to true.
71365a9ecf2SRichard Tran Mills 
714db781477SPatrick Sanan .seealso: `VecSetBindingPropagates()`, `MatGetBindingPropagates()`
71565a9ecf2SRichard Tran Mills @*/
7169371c9d4SSatish Balay PetscErrorCode MatSetBindingPropagates(Mat A, PetscBool flg) {
71765a9ecf2SRichard Tran Mills   PetscFunctionBegin;
71865a9ecf2SRichard Tran Mills   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
71965a9ecf2SRichard Tran Mills #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA)
72065a9ecf2SRichard Tran Mills   A->bindingpropagates = flg;
72165a9ecf2SRichard Tran Mills #endif
72265a9ecf2SRichard Tran Mills   PetscFunctionReturn(0);
72365a9ecf2SRichard Tran Mills }
724e9c74fd6SRichard Tran Mills 
725e9c74fd6SRichard Tran Mills /*@
726e9c74fd6SRichard Tran Mills    MatGetBindingPropagates - Gets whether the state of being bound to the CPU for a GPU matrix type propagates to child and some other associated objects
727e9c74fd6SRichard Tran Mills 
728e9c74fd6SRichard Tran Mills    Input Parameter:
729e9c74fd6SRichard Tran Mills .  A - the matrix
730e9c74fd6SRichard Tran Mills 
731e9c74fd6SRichard Tran Mills    Output Parameter:
732e9c74fd6SRichard Tran Mills .  flg - flag indicating whether the boundtocpu flag will be propagated
733e9c74fd6SRichard Tran Mills 
734e9c74fd6SRichard Tran Mills    Level: developer
735e9c74fd6SRichard Tran Mills 
736db781477SPatrick Sanan .seealso: `MatSetBindingPropagates()`
737e9c74fd6SRichard Tran Mills @*/
7389371c9d4SSatish Balay PetscErrorCode MatGetBindingPropagates(Mat A, PetscBool *flg) {
739e9c74fd6SRichard Tran Mills   PetscFunctionBegin;
740e9c74fd6SRichard Tran Mills   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
741e9c74fd6SRichard Tran Mills   PetscValidBoolPointer(flg, 2);
742e9c74fd6SRichard Tran Mills #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA)
743e9c74fd6SRichard Tran Mills   *flg = A->bindingpropagates;
744e9c74fd6SRichard Tran Mills #else
745e9c74fd6SRichard Tran Mills   *flg = PETSC_FALSE;
746e9c74fd6SRichard Tran Mills #endif
747e9c74fd6SRichard Tran Mills   PetscFunctionReturn(0);
748e9c74fd6SRichard Tran Mills }
749