xref: /petsc/src/mat/utils/gcreate.c (revision 48a46eb9bd028bec07ec0f396b1a3abb43f14558)
1af0996ceSBarry Smith #include <petsc/private/matimpl.h> /*I "petscmat.h"  I*/
27807a1faSBarry Smith 
39371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatSetBlockSizes_Default(Mat mat, PetscInt rbs, PetscInt cbs) {
446533700Sstefano_zampini   PetscFunctionBegin;
55c577a9aSstefano_zampini   if (!mat->preallocated) PetscFunctionReturn(0);
6aed4548fSBarry Smith   PetscCheck(mat->rmap->bs <= 0 || mat->rmap->bs == rbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Cannot change row block size %" PetscInt_FMT " to %" PetscInt_FMT, mat->rmap->bs, rbs);
7aed4548fSBarry Smith   PetscCheck(mat->cmap->bs <= 0 || mat->cmap->bs == cbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Cannot change column block size %" PetscInt_FMT " to %" PetscInt_FMT, mat->cmap->bs, cbs);
846533700Sstefano_zampini   PetscFunctionReturn(0);
946533700Sstefano_zampini }
1046533700Sstefano_zampini 
119371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatShift_Basic(Mat Y, PetscScalar a) {
127d68702bSBarry Smith   PetscInt    i, start, end;
137d68702bSBarry Smith   PetscScalar alpha = a;
147d68702bSBarry Smith   PetscBool   prevoption;
157d68702bSBarry Smith 
167d68702bSBarry Smith   PetscFunctionBegin;
179566063dSJacob Faibussowitsch   PetscCall(MatGetOption(Y, MAT_NO_OFF_PROC_ENTRIES, &prevoption));
189566063dSJacob Faibussowitsch   PetscCall(MatSetOption(Y, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
199566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Y, &start, &end));
207d68702bSBarry Smith   for (i = start; i < end; i++) {
21*48a46eb9SPierre Jolivet     if (i < Y->cmap->N) PetscCall(MatSetValues(Y, 1, &i, 1, &i, &alpha, ADD_VALUES));
22ab6153dcSStefano Zampini   }
239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Y, MAT_FINAL_ASSEMBLY));
249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Y, MAT_FINAL_ASSEMBLY));
259566063dSJacob Faibussowitsch   PetscCall(MatSetOption(Y, MAT_NO_OFF_PROC_ENTRIES, prevoption));
267d68702bSBarry Smith   PetscFunctionReturn(0);
277d68702bSBarry Smith }
287d68702bSBarry Smith 
2905869f15SSatish Balay /*@
3069dd0797SLois Curfman McInnes    MatCreate - Creates a matrix where the type is determined
317e5f4302SBarry Smith    from either a call to MatSetType() or from the options database
327e5f4302SBarry Smith    with a call to MatSetFromOptions(). The default matrix type is
3369b1f4b7SBarry Smith    AIJ, using the routines MatCreateSeqAIJ() or MatCreateAIJ()
347e5f4302SBarry Smith    if you do not set a type in the options database. If you never
357e5f4302SBarry Smith    call MatSetType() or MatSetFromOptions() it will generate an
36f8ab6608SSatish Balay    error when you try to use the matrix.
3783e1b59cSLois Curfman McInnes 
38d083f849SBarry Smith    Collective
39cb13003dSBarry Smith 
40f69a0ea3SMatthew Knepley    Input Parameter:
41f69a0ea3SMatthew Knepley .  comm - MPI communicator
427807a1faSBarry Smith 
437807a1faSBarry Smith    Output Parameter:
44dc401e71SLois Curfman McInnes .  A - the matrix
45e0b365e2SLois Curfman McInnes 
46273d9f13SBarry Smith    Options Database Keys:
47273d9f13SBarry Smith +    -mat_type seqaij   - AIJ type, uses MatCreateSeqAIJ()
4869b1f4b7SBarry Smith .    -mat_type mpiaij   - AIJ type, uses MatCreateAIJ()
49273d9f13SBarry Smith .    -mat_type seqdense - dense type, uses MatCreateSeqDense()
5069b1f4b7SBarry Smith .    -mat_type mpidense - dense type, uses MatCreateDense()
51273d9f13SBarry Smith .    -mat_type seqbaij  - block AIJ type, uses MatCreateSeqBAIJ()
5269b1f4b7SBarry Smith -    -mat_type mpibaij  - block AIJ type, uses MatCreateBAIJ()
53e0b365e2SLois Curfman McInnes 
5483e1b59cSLois Curfman McInnes    Even More Options Database Keys:
5583e1b59cSLois Curfman McInnes    See the manpages for particular formats (e.g., MatCreateSeqAIJ())
5683e1b59cSLois Curfman McInnes    for additional format-specific options.
57e0b365e2SLois Curfman McInnes 
58273d9f13SBarry Smith    Level: beginner
59273d9f13SBarry Smith 
60db781477SPatrick Sanan .seealso: `MatCreateSeqAIJ()`, `MatCreateAIJ()`,
61db781477SPatrick Sanan           `MatCreateSeqDense()`, `MatCreateDense()`,
62db781477SPatrick Sanan           `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`,
63db781477SPatrick Sanan           `MatCreateSeqSBAIJ()`, `MatCreateSBAIJ()`,
64db781477SPatrick Sanan           `MatConvert()`
65273d9f13SBarry Smith @*/
669371c9d4SSatish Balay PetscErrorCode MatCreate(MPI_Comm comm, Mat *A) {
67273d9f13SBarry Smith   Mat B;
68273d9f13SBarry Smith 
69273d9f13SBarry Smith   PetscFunctionBegin;
70f69a0ea3SMatthew Knepley   PetscValidPointer(A, 2);
7197f1f81fSBarry Smith 
720298fd71SBarry Smith   *A = NULL;
739566063dSJacob Faibussowitsch   PetscCall(MatInitializePackage());
748ba1e511SMatthew Knepley 
759566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(B, MAT_CLASSID, "Mat", "Matrix", "Mat", comm, MatDestroy, MatView));
769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &B->rmap));
779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &B->cmap));
789566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(VECSTANDARD, &B->defaultvectype));
7926fbe8dcSKarl Rupp 
80b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_UNKNOWN;
81b94d7dedSBarry Smith   B->hermitian                   = PETSC_BOOL3_UNKNOWN;
82b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_UNKNOWN;
83b94d7dedSBarry Smith   B->spd                         = PETSC_BOOL3_UNKNOWN;
84b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_FALSE;
85b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_FALSE;
86b94d7dedSBarry Smith 
8794342113SStefano Zampini   B->congruentlayouts = PETSC_DECIDE;
88273d9f13SBarry Smith   B->preallocated     = PETSC_FALSE;
896f3d89d0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
906f3d89d0SStefano Zampini   B->boundtocpu = PETSC_TRUE;
916f3d89d0SStefano Zampini #endif
92273d9f13SBarry Smith   *A = B;
93273d9f13SBarry Smith   PetscFunctionReturn(0);
94273d9f13SBarry Smith }
95273d9f13SBarry Smith 
96422a814eSBarry Smith /*@
9784d44b13SHong Zhang    MatSetErrorIfFailure - Causes Mat to generate an error, for example a zero pivot, is detected.
98422a814eSBarry Smith 
99422a814eSBarry Smith    Logically Collective on Mat
100422a814eSBarry Smith 
101422a814eSBarry Smith    Input Parameters:
102422a814eSBarry Smith +  mat -  matrix obtained from MatCreate()
103422a814eSBarry Smith -  flg - PETSC_TRUE indicates you want the error generated
104422a814eSBarry Smith 
105422a814eSBarry Smith    Level: advanced
106422a814eSBarry Smith 
107db781477SPatrick Sanan .seealso: `PCSetErrorIfFailure()`
108422a814eSBarry Smith @*/
1099371c9d4SSatish Balay PetscErrorCode MatSetErrorIfFailure(Mat mat, PetscBool flg) {
110422a814eSBarry Smith   PetscFunctionBegin;
111422a814eSBarry Smith   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
112422a814eSBarry Smith   PetscValidLogicalCollectiveBool(mat, flg, 2);
11384d44b13SHong Zhang   mat->erroriffailure = flg;
114422a814eSBarry Smith   PetscFunctionReturn(0);
115422a814eSBarry Smith }
116422a814eSBarry Smith 
117f69a0ea3SMatthew Knepley /*@
118f69a0ea3SMatthew Knepley   MatSetSizes - Sets the local and global sizes, and checks to determine compatibility
119f69a0ea3SMatthew Knepley 
120f69a0ea3SMatthew Knepley   Collective on Mat
121f69a0ea3SMatthew Knepley 
122f69a0ea3SMatthew Knepley   Input Parameters:
123f69a0ea3SMatthew Knepley +  A - the matrix
124f69a0ea3SMatthew Knepley .  m - number of local rows (or PETSC_DECIDE)
125f69a0ea3SMatthew Knepley .  n - number of local columns (or PETSC_DECIDE)
126f69a0ea3SMatthew Knepley .  M - number of global rows (or PETSC_DETERMINE)
127f69a0ea3SMatthew Knepley -  N - number of global columns (or PETSC_DETERMINE)
128f69a0ea3SMatthew Knepley 
129f69a0ea3SMatthew Knepley    Notes:
130f69a0ea3SMatthew Knepley    m (n) and M (N) cannot be both PETSC_DECIDE
131f69a0ea3SMatthew Knepley    If one processor calls this with M (N) of PETSC_DECIDE then all processors must, otherwise the program will hang.
132f69a0ea3SMatthew Knepley 
133f69a0ea3SMatthew Knepley    If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the
134f69a0ea3SMatthew Knepley    user must ensure that they are chosen to be compatible with the
135f69a0ea3SMatthew Knepley    vectors. To do this, one first considers the matrix-vector product
136f69a0ea3SMatthew Knepley    'y = A x'. The 'm' that is used in the above routine must match the
137f69a0ea3SMatthew Knepley    local size used in the vector creation routine VecCreateMPI() for 'y'.
138f69a0ea3SMatthew Knepley    Likewise, the 'n' used must match that used as the local size in
139f69a0ea3SMatthew Knepley    VecCreateMPI() for 'x'.
140f69a0ea3SMatthew Knepley 
141f73d5cc4SBarry Smith    You cannot change the sizes once they have been set.
142f73d5cc4SBarry Smith 
143f73d5cc4SBarry Smith    The sizes must be set before MatSetUp() or MatXXXSetPreallocation() is called.
144f73d5cc4SBarry Smith 
145f69a0ea3SMatthew Knepley   Level: beginner
146f69a0ea3SMatthew Knepley 
147db781477SPatrick Sanan .seealso: `MatGetSize()`, `PetscSplitOwnership()`
148f69a0ea3SMatthew Knepley @*/
1499371c9d4SSatish Balay PetscErrorCode MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) {
150f69a0ea3SMatthew Knepley   PetscFunctionBegin;
1510700a824SBarry Smith   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
152a69c7061SStefano Zampini   PetscValidLogicalCollectiveInt(A, M, 4);
153a69c7061SStefano Zampini   PetscValidLogicalCollectiveInt(A, N, 5);
154aed4548fSBarry Smith   PetscCheck(M <= 0 || m <= M, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local row size %" PetscInt_FMT " cannot be larger than global row size %" PetscInt_FMT, m, M);
155aed4548fSBarry Smith   PetscCheck(N <= 0 || n <= N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local column size %" PetscInt_FMT " cannot be larger than global column size %" PetscInt_FMT, n, N);
1569371c9d4SSatish Balay   PetscCheck((A->rmap->n < 0 || A->rmap->N < 0) || (A->rmap->n == m && (M <= 0 || A->rmap->N == M)), PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change/reset row sizes to %" PetscInt_FMT " local %" PetscInt_FMT " global after previously setting them to %" PetscInt_FMT " local %" PetscInt_FMT " global", m, M,
1579371c9d4SSatish Balay              A->rmap->n, A->rmap->N);
1589371c9d4SSatish Balay   PetscCheck((A->cmap->n < 0 || A->cmap->N < 0) || (A->cmap->n == n && (N <= 0 || A->cmap->N == N)), PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change/reset column sizes to %" PetscInt_FMT " local %" PetscInt_FMT " global after previously setting them to %" PetscInt_FMT " local %" PetscInt_FMT " global", n, N,
1599371c9d4SSatish Balay              A->cmap->n, A->cmap->N);
160d0f46423SBarry Smith   A->rmap->n = m;
161d0f46423SBarry Smith   A->cmap->n = n;
16259cb773eSBarry Smith   A->rmap->N = M > -1 ? M : A->rmap->N;
16359cb773eSBarry Smith   A->cmap->N = N > -1 ? N : A->cmap->N;
164f69a0ea3SMatthew Knepley   PetscFunctionReturn(0);
165f69a0ea3SMatthew Knepley }
166f69a0ea3SMatthew Knepley 
16705869f15SSatish Balay /*@
168273d9f13SBarry Smith    MatSetFromOptions - Creates a matrix where the type is determined
169273d9f13SBarry Smith    from the options database. Generates a parallel MPI matrix if the
170273d9f13SBarry Smith    communicator has more than one processor.  The default matrix type is
17169b1f4b7SBarry Smith    AIJ, using the routines MatCreateSeqAIJ() and MatCreateAIJ() if
1727e5f4302SBarry Smith    you do not select a type in the options database.
173273d9f13SBarry Smith 
174273d9f13SBarry Smith    Collective on Mat
175273d9f13SBarry Smith 
176273d9f13SBarry Smith    Input Parameter:
177273d9f13SBarry Smith .  A - the matrix
178273d9f13SBarry Smith 
179273d9f13SBarry Smith    Options Database Keys:
180273d9f13SBarry Smith +    -mat_type seqaij   - AIJ type, uses MatCreateSeqAIJ()
18169b1f4b7SBarry Smith .    -mat_type mpiaij   - AIJ type, uses MatCreateAIJ()
182273d9f13SBarry Smith .    -mat_type seqdense - dense type, uses MatCreateSeqDense()
18369b1f4b7SBarry Smith .    -mat_type mpidense - dense type, uses MatCreateDense()
184273d9f13SBarry Smith .    -mat_type seqbaij  - block AIJ type, uses MatCreateSeqBAIJ()
18569b1f4b7SBarry Smith -    -mat_type mpibaij  - block AIJ type, uses MatCreateBAIJ()
186273d9f13SBarry Smith 
187273d9f13SBarry Smith    Even More Options Database Keys:
188273d9f13SBarry Smith    See the manpages for particular formats (e.g., MatCreateSeqAIJ())
189273d9f13SBarry Smith    for additional format-specific options.
190bd9ce289SLois Curfman McInnes 
1911d69843bSLois Curfman McInnes    Level: beginner
1921d69843bSLois Curfman McInnes 
193db781477SPatrick Sanan .seealso: `MatCreateSeqAIJ(()`, `MatCreateAIJ()`,
194db781477SPatrick Sanan           `MatCreateSeqDense()`, `MatCreateDense()`,
195db781477SPatrick Sanan           `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`,
196db781477SPatrick Sanan           `MatCreateSeqSBAIJ()`, `MatCreateSBAIJ()`,
197db781477SPatrick Sanan           `MatConvert()`
1987807a1faSBarry Smith @*/
1999371c9d4SSatish Balay PetscErrorCode MatSetFromOptions(Mat B) {
200f3be49caSLisandro Dalcin   const char *deft = MATAIJ;
201f3be49caSLisandro Dalcin   char        type[256];
20269df5c0cSJed Brown   PetscBool   flg, set;
20316e04d98SRichard Tran Mills   PetscInt    bind_below = 0;
204dbb450caSBarry Smith 
2053a40ed3dSBarry Smith   PetscFunctionBegin;
2060700a824SBarry Smith   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
207f3be49caSLisandro Dalcin 
208d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)B);
209535b19f3SBarry Smith 
210535b19f3SBarry Smith   if (B->rmap->bs < 0) {
211535b19f3SBarry Smith     PetscInt newbs = -1;
2129566063dSJacob Faibussowitsch     PetscCall(PetscOptionsInt("-mat_block_size", "Set the blocksize used to store the matrix", "MatSetBlockSize", newbs, &newbs, &flg));
213535b19f3SBarry Smith     if (flg) {
2149566063dSJacob Faibussowitsch       PetscCall(PetscLayoutSetBlockSize(B->rmap, newbs));
2159566063dSJacob Faibussowitsch       PetscCall(PetscLayoutSetBlockSize(B->cmap, newbs));
216535b19f3SBarry Smith     }
217535b19f3SBarry Smith   }
218535b19f3SBarry Smith 
2199566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-mat_type", "Matrix type", "MatSetType", MatList, deft, type, 256, &flg));
220273d9f13SBarry Smith   if (flg) {
2219566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, type));
222f3be49caSLisandro Dalcin   } else if (!((PetscObject)B)->type_name) {
2239566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, deft));
224273d9f13SBarry Smith   }
225f3be49caSLisandro Dalcin 
2269566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_is_symmetric", "Checks if mat is symmetric on MatAssemblyEnd()", "MatIsSymmetric", &B->checksymmetryonassembly));
2279566063dSJacob Faibussowitsch   PetscCall(PetscOptionsReal("-mat_is_symmetric", "Checks if mat is symmetric on MatAssemblyEnd()", "MatIsSymmetric", B->checksymmetrytol, &B->checksymmetrytol, NULL));
2289566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_null_space_test", "Checks if provided null space is correct in MatAssemblyEnd()", "MatSetNullSpaceTest", B->checknullspaceonassembly, &B->checknullspaceonassembly, NULL));
2299566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_error_if_failure", "Generate an error if an error occurs when factoring the matrix", "MatSetErrorIfFailure", B->erroriffailure, &B->erroriffailure, NULL));
230840d65ccSBarry Smith 
231dbbe0bcdSBarry Smith   PetscTryTypeMethod(B, setfromoptions, PetscOptionsObject);
232f3be49caSLisandro Dalcin 
23369df5c0cSJed Brown   flg = PETSC_FALSE;
2349566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_new_nonzero_location_err", "Generate an error if new nonzeros are created in the matrix structure (useful to test preallocation)", "MatSetOption", flg, &flg, &set));
2359566063dSJacob Faibussowitsch   if (set) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, flg));
23669df5c0cSJed Brown   flg = PETSC_FALSE;
2379566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_new_nonzero_allocation_err", "Generate an error if new nonzeros are allocated in the matrix structure (useful to test preallocation)", "MatSetOption", flg, &flg, &set));
2389566063dSJacob Faibussowitsch   if (set) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, flg));
239478db826SMatthew G. Knepley   flg = PETSC_FALSE;
2409566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_ignore_zero_entries", "For AIJ/IS matrices this will stop zero values from creating a zero location in the matrix", "MatSetOption", flg, &flg, &set));
2419566063dSJacob Faibussowitsch   if (set) PetscCall(MatSetOption(B, MAT_IGNORE_ZERO_ENTRIES, flg));
24269df5c0cSJed Brown 
2431a2c6b5cSJunchao Zhang   flg = PETSC_FALSE;
2449566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_form_explicit_transpose", "Hint to form an explicit transpose for operations like MatMultTranspose", "MatSetOption", flg, &flg, &set));
2459566063dSJacob Faibussowitsch   if (set) PetscCall(MatSetOption(B, MAT_FORM_EXPLICIT_TRANSPOSE, flg));
2461a2c6b5cSJunchao Zhang 
24716e04d98SRichard Tran Mills   /* Bind to CPU if below a user-specified size threshold.
24816e04d98SRichard Tran Mills    * This perhaps belongs in the options for the GPU Mat types, but MatBindToCPU() does nothing when called on non-GPU types,
24916e04d98SRichard Tran Mills    * and putting it here makes is more maintainable than duplicating this for all. */
2509566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-mat_bind_below", "Set the size threshold (in local rows) below which the Mat is bound to the CPU", "MatBindToCPU", bind_below, &bind_below, &flg));
251*48a46eb9SPierre Jolivet   if (flg && B->rmap->n < bind_below) PetscCall(MatBindToCPU(B, PETSC_TRUE));
25216e04d98SRichard Tran Mills 
2535d973c19SBarry Smith   /* process any options handlers added with PetscObjectAddOptionsHandler() */
254dbbe0bcdSBarry Smith   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)B, PetscOptionsObject));
255d0609cedSBarry Smith   PetscOptionsEnd();
2563a40ed3dSBarry Smith   PetscFunctionReturn(0);
2577807a1faSBarry Smith }
2587807a1faSBarry Smith 
259987010e7SBarry Smith /*@C
260e8bd9bafSStefano Zampini    MatXAIJSetPreallocation - set preallocation for serial and parallel AIJ, BAIJ, and SBAIJ matrices and their unassembled versions.
26163562e91SJed Brown 
26263562e91SJed Brown    Collective on Mat
26363562e91SJed Brown 
2644165533cSJose E. Roman    Input Parameters:
26563562e91SJed Brown +  A - matrix being preallocated
26663562e91SJed Brown .  bs - block size
26741319c1dSStefano Zampini .  dnnz - number of nonzero column blocks per block row of diagonal part of parallel matrix
26841319c1dSStefano Zampini .  onnz - number of nonzero column blocks per block row of off-diagonal part of parallel matrix
26941319c1dSStefano Zampini .  dnnzu - number of nonzero column blocks per block row of upper-triangular part of diagonal part of parallel matrix
27041319c1dSStefano Zampini -  onnzu - number of nonzero column blocks per block row of upper-triangular part of off-diagonal part of parallel matrix
27163562e91SJed Brown 
27263562e91SJed Brown    Level: beginner
27363562e91SJed Brown 
274db781477SPatrick Sanan .seealso: `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`,
275db781477SPatrick Sanan           `PetscSplitOwnership()`
27663562e91SJed Brown @*/
2779371c9d4SSatish Balay PetscErrorCode MatXAIJSetPreallocation(Mat A, PetscInt bs, const PetscInt dnnz[], const PetscInt onnz[], const PetscInt dnnzu[], const PetscInt onnzu[]) {
27841319c1dSStefano Zampini   PetscInt cbs;
27963562e91SJed Brown   void (*aij)(void);
280e8bd9bafSStefano Zampini   void (*is)(void);
281990279feSStefano Zampini   void (*hyp)(void) = NULL;
28263562e91SJed Brown 
28363562e91SJed Brown   PetscFunctionBegin;
28441319c1dSStefano Zampini   if (bs != PETSC_DECIDE) { /* don't mess with an already set block size */
2859566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(A, bs));
28641319c1dSStefano Zampini   }
2879566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->rmap));
2889566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->cmap));
2899566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(A, &bs, &cbs));
29041319c1dSStefano Zampini   /* these routines assumes bs == cbs, this should be checked somehow */
2919566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(A, bs, 0, dnnz));
2929566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(A, bs, 0, dnnz, 0, onnz));
2939566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(A, bs, 0, dnnzu));
2949566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(A, bs, 0, dnnzu, 0, onnzu));
29563562e91SJed Brown   /*
296e8bd9bafSStefano Zampini     In general, we have to do extra work to preallocate for scalar (AIJ) or unassembled (IS) matrices so we check whether it will do any
29763562e91SJed Brown     good before going on with it.
29863562e91SJed Brown   */
2999566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJSetPreallocation_C", &aij));
3009566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatISSetPreallocation_C", &is));
301990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
3029566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatHYPRESetPreallocation_C", &hyp));
303990279feSStefano Zampini #endif
304*48a46eb9SPierre Jolivet   if (!aij && !is && !hyp) PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJSetPreallocation_C", &aij));
305990279feSStefano Zampini   if (aij || is || hyp) {
30641319c1dSStefano Zampini     if (bs == cbs && bs == 1) {
3079566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJSetPreallocation(A, 0, dnnz));
3089566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJSetPreallocation(A, 0, dnnz, 0, onnz));
3099566063dSJacob Faibussowitsch       PetscCall(MatISSetPreallocation(A, 0, dnnz, 0, onnz));
310990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
3119566063dSJacob Faibussowitsch       PetscCall(MatHYPRESetPreallocation(A, 0, dnnz, 0, onnz));
312990279feSStefano Zampini #endif
3133e5f4774SJed Brown     } else { /* Convert block-row precallocation to scalar-row */
31463562e91SJed Brown       PetscInt i, m, *sdnnz, *sonnz;
3159566063dSJacob Faibussowitsch       PetscCall(MatGetLocalSize(A, &m, NULL));
3169566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2((!!dnnz) * m, &sdnnz, (!!onnz) * m, &sonnz));
317dec54756SJed Brown       for (i = 0; i < m; i++) {
31841319c1dSStefano Zampini         if (dnnz) sdnnz[i] = dnnz[i / bs] * cbs;
31941319c1dSStefano Zampini         if (onnz) sonnz[i] = onnz[i / bs] * cbs;
32063562e91SJed Brown       }
3219566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJSetPreallocation(A, 0, dnnz ? sdnnz : NULL));
3229566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJSetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL));
3239566063dSJacob Faibussowitsch       PetscCall(MatISSetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL));
324990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
3259566063dSJacob Faibussowitsch       PetscCall(MatHYPRESetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL));
326990279feSStefano Zampini #endif
3279566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sdnnz, sonnz));
32863562e91SJed Brown     }
32963562e91SJed Brown   }
33063562e91SJed Brown   PetscFunctionReturn(0);
33163562e91SJed Brown }
33263562e91SJed Brown 
333273d9f13SBarry Smith /*
334eb6b5d47SBarry Smith         Merges some information from Cs header to A; the C object is then destroyed
335d0f46423SBarry Smith 
336d0f46423SBarry Smith         This is somewhat different from MatHeaderReplace() it would be nice to merge the code
337273d9f13SBarry Smith */
3389371c9d4SSatish Balay PetscErrorCode MatHeaderMerge(Mat A, Mat *C) {
339d44834fbSBarry Smith   PetscInt         refct;
34073107ff1SLisandro Dalcin   PetscOps         Abops;
34173107ff1SLisandro Dalcin   struct _MatOps   Aops;
3424768301cSVaclav Hapla   char            *mtype, *mname, *mprefix;
3434222ddf1SHong Zhang   Mat_Product     *product;
34433e6eea4SJose E. Roman   Mat_Redundant   *redundant;
345d4a972cbSStefano Zampini   PetscObjectState state;
346273d9f13SBarry Smith 
347273d9f13SBarry Smith   PetscFunctionBegin;
3481dc04de0SStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
3491dc04de0SStefano Zampini   PetscValidHeaderSpecific(*C, MAT_CLASSID, 2);
3501dc04de0SStefano Zampini   if (A == *C) PetscFunctionReturn(0);
3511dc04de0SStefano Zampini   PetscCheckSameComm(A, 1, *C, 2);
352273d9f13SBarry Smith   /* save the parts of A we need */
35373107ff1SLisandro Dalcin   Abops     = ((PetscObject)A)->bops[0];
35473107ff1SLisandro Dalcin   Aops      = A->ops[0];
3557adad957SLisandro Dalcin   refct     = ((PetscObject)A)->refct;
3565c9eb25fSBarry Smith   mtype     = ((PetscObject)A)->type_name;
3575c9eb25fSBarry Smith   mname     = ((PetscObject)A)->name;
358d4a972cbSStefano Zampini   state     = ((PetscObject)A)->state;
3594768301cSVaclav Hapla   mprefix   = ((PetscObject)A)->prefix;
3604222ddf1SHong Zhang   product   = A->product;
36133e6eea4SJose E. Roman   redundant = A->redundant;
36230735b05SKris Buschelman 
3635c9eb25fSBarry Smith   /* zero these so the destroy below does not free them */
364f4259b30SLisandro Dalcin   ((PetscObject)A)->type_name = NULL;
365f4259b30SLisandro Dalcin   ((PetscObject)A)->name      = NULL;
3665c9eb25fSBarry Smith 
367dbbe0bcdSBarry Smith   /*
368dbbe0bcdSBarry Smith      free all the interior data structures from mat
369dbbe0bcdSBarry Smith      cannot use PetscUseTypeMethod(A,destroy); because compiler
370dbbe0bcdSBarry Smith      thinks it may print NULL type_name and name
371dbbe0bcdSBarry Smith   */
372dbbe0bcdSBarry Smith   PetscTryTypeMethod(A, destroy);
3737c99f97cSSatish Balay 
3749566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->defaultvectype));
3759566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&A->rmap));
3769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&A->cmap));
3779566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDestroy(&((PetscObject)A)->qlist));
3789566063dSJacob Faibussowitsch   PetscCall(PetscObjectListDestroy(&((PetscObject)A)->olist));
3799566063dSJacob Faibussowitsch   PetscCall(PetscComposedQuantitiesDestroy((PetscObject)A));
380273d9f13SBarry Smith 
381273d9f13SBarry Smith   /* copy C over to A */
38226cc229bSBarry Smith   PetscCall(PetscFree(A->factorprefix));
3839566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(A, *C, sizeof(struct _p_Mat)));
384273d9f13SBarry Smith 
385273d9f13SBarry Smith   /* return the parts of A we saved */
38673107ff1SLisandro Dalcin   ((PetscObject)A)->bops[0]   = Abops;
38773107ff1SLisandro Dalcin   A->ops[0]                   = Aops;
3887adad957SLisandro Dalcin   ((PetscObject)A)->refct     = refct;
3897adad957SLisandro Dalcin   ((PetscObject)A)->type_name = mtype;
3907adad957SLisandro Dalcin   ((PetscObject)A)->name      = mname;
3914768301cSVaclav Hapla   ((PetscObject)A)->prefix    = mprefix;
392d4a972cbSStefano Zampini   ((PetscObject)A)->state     = state + 1;
3934222ddf1SHong Zhang   A->product                  = product;
39433e6eea4SJose E. Roman   A->redundant                = redundant;
395273d9f13SBarry Smith 
3965c9eb25fSBarry Smith   /* since these two are copied into A we do not want them destroyed in C */
397f4259b30SLisandro Dalcin   ((PetscObject)*C)->qlist = NULL;
398f4259b30SLisandro Dalcin   ((PetscObject)*C)->olist = NULL;
39926fbe8dcSKarl Rupp 
4009566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(C));
401273d9f13SBarry Smith   PetscFunctionReturn(0);
402273d9f13SBarry Smith }
4038ab5b326SKris Buschelman /*
404eb6b5d47SBarry Smith         Replace A's header with that of C; the C object is then destroyed
405d0f46423SBarry Smith 
406eb6b5d47SBarry Smith         This is essentially code moved from MatDestroy()
407eb6b5d47SBarry Smith 
408eb6b5d47SBarry Smith         This is somewhat different from MatHeaderMerge() it would be nice to merge the code
409b30237c6SBarry Smith 
410b30237c6SBarry Smith         Used in DM hence is declared PETSC_EXTERN
4118ab5b326SKris Buschelman */
4129371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat A, Mat *C) {
41327b31e29SJed Brown   PetscInt         refct;
414fefd9316SJose E. Roman   PetscObjectState state;
41528be2f97SBarry Smith   struct _p_Mat    buffer;
41681fa06acSBarry Smith   MatStencilInfo   stencil;
4178ab5b326SKris Buschelman 
4188ab5b326SKris Buschelman   PetscFunctionBegin;
41927b31e29SJed Brown   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
42028be2f97SBarry Smith   PetscValidHeaderSpecific(*C, MAT_CLASSID, 2);
42128be2f97SBarry Smith   if (A == *C) PetscFunctionReturn(0);
42228be2f97SBarry Smith   PetscCheckSameComm(A, 1, *C, 2);
423aed4548fSBarry Smith   PetscCheck(((PetscObject)*C)->refct == 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "Object C has refct %" PetscInt_FMT " > 1, would leave hanging reference", ((PetscObject)*C)->refct);
4246d7c1e57SBarry Smith 
42528be2f97SBarry Smith   /* swap C and A */
42627b31e29SJed Brown   refct   = ((PetscObject)A)->refct;
427fefd9316SJose E. Roman   state   = ((PetscObject)A)->state;
42881fa06acSBarry Smith   stencil = A->stencil;
4299566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(&buffer, A, sizeof(struct _p_Mat)));
4309566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(A, *C, sizeof(struct _p_Mat)));
4319566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(*C, &buffer, sizeof(struct _p_Mat)));
43227b31e29SJed Brown   ((PetscObject)A)->refct = refct;
433fefd9316SJose E. Roman   ((PetscObject)A)->state = state + 1;
43481fa06acSBarry Smith   A->stencil              = stencil;
43526fbe8dcSKarl Rupp 
436c32d4117SBarry Smith   ((PetscObject)*C)->refct = 1;
4379566063dSJacob Faibussowitsch   PetscCall(MatShellSetOperation(*C, MATOP_DESTROY, (void (*)(void))NULL));
4389566063dSJacob Faibussowitsch   PetscCall(MatDestroy(C));
4398ab5b326SKris Buschelman   PetscFunctionReturn(0);
4408ab5b326SKris Buschelman }
441e7e92044SBarry Smith 
442e7e92044SBarry Smith /*@
443b470e4b4SRichard Tran Mills      MatBindToCPU - marks a matrix to temporarily stay on the CPU and perform computations on the CPU
444e7e92044SBarry Smith 
4452216c58aSStefano Zampini    Logically collective on Mat
4462216c58aSStefano Zampini 
447e7e92044SBarry Smith    Input Parameters:
448e7e92044SBarry Smith +   A - the matrix
449b470e4b4SRichard Tran Mills -   flg - bind to the CPU if value of PETSC_TRUE
450e7e92044SBarry Smith 
45190ea27d8SSatish Balay    Level: intermediate
4522216c58aSStefano Zampini 
453db781477SPatrick Sanan .seealso: `MatBoundToCPU()`
454e7e92044SBarry Smith @*/
4559371c9d4SSatish Balay PetscErrorCode MatBindToCPU(Mat A, PetscBool flg) {
4567d871021SStefano Zampini   PetscFunctionBegin;
4572ffa8ee7SStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4582ffa8ee7SStefano Zampini   PetscValidLogicalCollectiveBool(A, flg, 2);
4592216c58aSStefano Zampini #if defined(PETSC_HAVE_DEVICE)
460b470e4b4SRichard Tran Mills   if (A->boundtocpu == flg) PetscFunctionReturn(0);
461b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
462dbbe0bcdSBarry Smith   PetscTryTypeMethod(A, bindtocpu, flg);
4632216c58aSStefano Zampini #endif
464e7e92044SBarry Smith   PetscFunctionReturn(0);
4652216c58aSStefano Zampini }
4662216c58aSStefano Zampini 
4672216c58aSStefano Zampini /*@
4682216c58aSStefano Zampini      MatBoundToCPU - query if a matrix is bound to the CPU
4692216c58aSStefano Zampini 
4702216c58aSStefano Zampini    Input Parameter:
4712216c58aSStefano Zampini .   A - the matrix
4722216c58aSStefano Zampini 
4732216c58aSStefano Zampini    Output Parameter:
4742216c58aSStefano Zampini .   flg - the logical flag
4752216c58aSStefano Zampini 
4762216c58aSStefano Zampini    Level: intermediate
4772216c58aSStefano Zampini 
478db781477SPatrick Sanan .seealso: `MatBindToCPU()`
4792216c58aSStefano Zampini @*/
4809371c9d4SSatish Balay PetscErrorCode MatBoundToCPU(Mat A, PetscBool *flg) {
4812ffa8ee7SStefano Zampini   PetscFunctionBegin;
4822ffa8ee7SStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
483dadcf809SJacob Faibussowitsch   PetscValidBoolPointer(flg, 2);
4842216c58aSStefano Zampini #if defined(PETSC_HAVE_DEVICE)
4852216c58aSStefano Zampini   *flg = A->boundtocpu;
4862216c58aSStefano Zampini #else
4872216c58aSStefano Zampini   *flg = PETSC_TRUE;
4887d871021SStefano Zampini #endif
4892216c58aSStefano Zampini   PetscFunctionReturn(0);
490e7e92044SBarry Smith }
4917e8381f9SStefano Zampini 
4929371c9d4SSatish Balay PetscErrorCode MatSetValuesCOO_Basic(Mat A, const PetscScalar coo_v[], InsertMode imode) {
4937e8381f9SStefano Zampini   IS              is_coo_i, is_coo_j;
4947e8381f9SStefano Zampini   const PetscInt *coo_i, *coo_j;
4957e8381f9SStefano Zampini   PetscInt        n, n_i, n_j;
4967e8381f9SStefano Zampini   PetscScalar     zero = 0.;
4977e8381f9SStefano Zampini 
4987e8381f9SStefano Zampini   PetscFunctionBegin;
4999566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_coo_i", (PetscObject *)&is_coo_i));
5009566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_coo_j", (PetscObject *)&is_coo_j));
50128b400f6SJacob Faibussowitsch   PetscCheck(is_coo_i, PetscObjectComm((PetscObject)A), PETSC_ERR_COR, "Missing coo_i IS");
50228b400f6SJacob Faibussowitsch   PetscCheck(is_coo_j, PetscObjectComm((PetscObject)A), PETSC_ERR_COR, "Missing coo_j IS");
5039566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(is_coo_i, &n_i));
5049566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(is_coo_j, &n_j));
50508401ef6SPierre Jolivet   PetscCheck(n_i == n_j, PETSC_COMM_SELF, PETSC_ERR_COR, "Wrong local size %" PetscInt_FMT " != %" PetscInt_FMT, n_i, n_j);
5069566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(is_coo_i, &coo_i));
5079566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(is_coo_j, &coo_j));
508*48a46eb9SPierre Jolivet   if (imode != ADD_VALUES) PetscCall(MatZeroEntries(A));
509*48a46eb9SPierre Jolivet   for (n = 0; n < n_i; n++) PetscCall(MatSetValue(A, coo_i[n], coo_j[n], coo_v ? coo_v[n] : zero, ADD_VALUES));
5109566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(is_coo_i, &coo_i));
5119566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(is_coo_j, &coo_j));
5127e8381f9SStefano Zampini   PetscFunctionReturn(0);
5137e8381f9SStefano Zampini }
5147e8381f9SStefano Zampini 
5159371c9d4SSatish Balay PetscErrorCode MatSetPreallocationCOO_Basic(Mat A, PetscCount ncoo, const PetscInt coo_i[], const PetscInt coo_j[]) {
5167e8381f9SStefano Zampini   Mat         preallocator;
5177e8381f9SStefano Zampini   IS          is_coo_i, is_coo_j;
5187e8381f9SStefano Zampini   PetscScalar zero = 0.0;
5197e8381f9SStefano Zampini 
5207e8381f9SStefano Zampini   PetscFunctionBegin;
5219566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->rmap));
5229566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->cmap));
5239566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &preallocator));
5249566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
5259566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
5269566063dSJacob Faibussowitsch   PetscCall(MatSetLayouts(preallocator, A->rmap, A->cmap));
5279566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
528*48a46eb9SPierre Jolivet   for (PetscCount n = 0; n < ncoo; n++) PetscCall(MatSetValue(preallocator, coo_i[n], coo_j[n], zero, INSERT_VALUES));
5299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
5309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
5319566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, A));
5329566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
5332c71b3e2SJacob Faibussowitsch   PetscCheck(ncoo <= PETSC_MAX_INT, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ncoo %" PetscCount_FMT " overflowed PetscInt; configure --with-64-bit-indices or request support", ncoo);
5349566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncoo, coo_i, PETSC_COPY_VALUES, &is_coo_i));
5359566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncoo, coo_j, PETSC_COPY_VALUES, &is_coo_j));
5369566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_coo_i", (PetscObject)is_coo_i));
5379566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_coo_j", (PetscObject)is_coo_j));
5389566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&is_coo_i));
5399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&is_coo_j));
5407e8381f9SStefano Zampini   PetscFunctionReturn(0);
5417e8381f9SStefano Zampini }
5427e8381f9SStefano Zampini 
54356856777SBarry Smith /*@C
544c3dd2894SJed Brown    MatSetPreallocationCOO - set preallocation for matrices using a coordinate format of the entries with global indices
5457e8381f9SStefano Zampini 
5467e8381f9SStefano Zampini    Collective on Mat
5477e8381f9SStefano Zampini 
5484165533cSJose E. Roman    Input Parameters:
5497e8381f9SStefano Zampini +  A - matrix being preallocated
55042550becSJunchao Zhang .  ncoo - number of entries
5517e8381f9SStefano Zampini .  coo_i - row indices
5527e8381f9SStefano Zampini -  coo_j - column indices
5537e8381f9SStefano Zampini 
5547e8381f9SStefano Zampini    Level: beginner
5557e8381f9SStefano Zampini 
556394ed5ebSJunchao Zhang    Notes:
557e8729f6fSJunchao Zhang    The indices coo_i and coo_j may be modified within this function. The caller should not rely on them
558e8729f6fSJunchao Zhang    having any specific value after this function returns. The arrays can be freed or reused immediately
559e8729f6fSJunchao Zhang    after this function returns.
560e8729f6fSJunchao Zhang 
561394ed5ebSJunchao Zhang    Entries can be repeated, see MatSetValuesCOO(). Entries with negative row or column indices are allowed
562394ed5ebSJunchao Zhang    but will be ignored. The corresponding entries in MatSetValuesCOO() will be ignored too. Remote entries
563394ed5ebSJunchao Zhang    are allowed and will be properly added or inserted to the matrix, unless the matrix option MAT_IGNORE_OFF_PROC_ENTRIES
564394ed5ebSJunchao Zhang    is set, in which case remote entries are ignored, or MAT_NO_OFF_PROC_ENTRIES is set, in which case an error will be generated.
5657e8381f9SStefano Zampini 
566db781477SPatrick Sanan .seealso: `MatSetValuesCOO()`, `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`, `MatSetPreallocationCOOLocal()`, `DMSetMatrixPreallocateSkip()`
5677e8381f9SStefano Zampini @*/
5689371c9d4SSatish Balay PetscErrorCode MatSetPreallocationCOO(Mat A, PetscCount ncoo, PetscInt coo_i[], PetscInt coo_j[]) {
56982a78a4eSJed Brown   PetscErrorCode (*f)(Mat, PetscCount, const PetscInt[], const PetscInt[]) = NULL;
5707e8381f9SStefano Zampini 
5717e8381f9SStefano Zampini   PetscFunctionBegin;
5727e8381f9SStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
5737e8381f9SStefano Zampini   PetscValidType(A, 1);
5747e8381f9SStefano Zampini   if (ncoo) PetscValidIntPointer(coo_i, 3);
5757e8381f9SStefano Zampini   if (ncoo) PetscValidIntPointer(coo_j, 4);
5769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->rmap));
5779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->cmap));
5789566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetPreallocationCOO_C", &f));
579cbc6b225SStefano Zampini 
5809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_PreallCOO, A, 0, 0, 0));
5817e8381f9SStefano Zampini   if (f) {
5829566063dSJacob Faibussowitsch     PetscCall((*f)(A, ncoo, coo_i, coo_j));
5837e8381f9SStefano Zampini   } else { /* allow fallback, very slow */
5849566063dSJacob Faibussowitsch     PetscCall(MatSetPreallocationCOO_Basic(A, ncoo, coo_i, coo_j));
5857e8381f9SStefano Zampini   }
5869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_PreallCOO, A, 0, 0, 0));
5876834774dSStefano Zampini   A->preallocated = PETSC_TRUE;
588cbc6b225SStefano Zampini   A->nonzerostate++;
5897e8381f9SStefano Zampini   PetscFunctionReturn(0);
5907e8381f9SStefano Zampini }
5917e8381f9SStefano Zampini 
59256856777SBarry Smith /*@C
593c3dd2894SJed Brown    MatSetPreallocationCOOLocal - set preallocation for matrices using a coordinate format of the entries with local indices
594c3dd2894SJed Brown 
595c3dd2894SJed Brown    Collective on Mat
596c3dd2894SJed Brown 
597c3dd2894SJed Brown    Input Parameters:
598c3dd2894SJed Brown +  A - matrix being preallocated
599c3dd2894SJed Brown .  ncoo - number of entries
600c3dd2894SJed Brown .  coo_i - row indices (local numbering; may be modified)
601c3dd2894SJed Brown -  coo_j - column indices (local numbering; may be modified)
602c3dd2894SJed Brown 
603c3dd2894SJed Brown    Level: beginner
604c3dd2894SJed Brown 
605c3dd2894SJed Brown    Notes:
606c3dd2894SJed Brown    The local indices are translated using the local to global mapping, thus MatSetLocalToGlobalMapping() must have been
607c3dd2894SJed Brown    called prior to this function.
608c3dd2894SJed Brown 
609c3dd2894SJed Brown    The indices coo_i and coo_j may be modified within this function. They might be translated to corresponding global
610735d7f90SBarry Smith    indices, but the caller should not rely on them having any specific value after this function returns. The arrays
611735d7f90SBarry Smith    can be freed or reused immediately after this function returns.
612c3dd2894SJed Brown 
613394ed5ebSJunchao Zhang    Entries can be repeated, see MatSetValuesCOO(). Entries with negative row or column indices are allowed
614394ed5ebSJunchao Zhang    but will be ignored. The corresponding entries in MatSetValuesCOO() will be ignored too. Remote entries
615394ed5ebSJunchao Zhang    are allowed and will be properly added or inserted to the matrix.
616c3dd2894SJed Brown 
617db781477SPatrick Sanan .seealso: `MatSetValuesCOO()`, `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`, `MatSetPreallocationCOO()`, `DMSetMatrixPreallocateSkip()`
618c3dd2894SJed Brown @*/
6199371c9d4SSatish Balay PetscErrorCode MatSetPreallocationCOOLocal(Mat A, PetscCount ncoo, PetscInt coo_i[], PetscInt coo_j[]) {
6206834774dSStefano Zampini   PetscErrorCode (*f)(Mat, PetscCount, PetscInt[], PetscInt[]) = NULL;
621c3dd2894SJed Brown 
622c3dd2894SJed Brown   PetscFunctionBegin;
623c3dd2894SJed Brown   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
624c3dd2894SJed Brown   PetscValidType(A, 1);
625c3dd2894SJed Brown   if (ncoo) PetscValidIntPointer(coo_i, 3);
626c3dd2894SJed Brown   if (ncoo) PetscValidIntPointer(coo_j, 4);
6276834774dSStefano Zampini   PetscCheck(ncoo <= PETSC_MAX_INT, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ncoo %" PetscCount_FMT " overflowed PetscInt; configure --with-64-bit-indices or request support", ncoo);
6289566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->rmap));
6299566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->cmap));
630cbc6b225SStefano Zampini 
6319566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetPreallocationCOOLocal_C", &f));
6326834774dSStefano Zampini   if (f) {
6339566063dSJacob Faibussowitsch     PetscCall((*f)(A, ncoo, coo_i, coo_j));
634cbc6b225SStefano Zampini     A->nonzerostate++;
6356834774dSStefano Zampini   } else {
636cbc6b225SStefano Zampini     ISLocalToGlobalMapping ltog_row, ltog_col;
6379566063dSJacob Faibussowitsch     PetscCall(MatGetLocalToGlobalMapping(A, &ltog_row, &ltog_col));
6389566063dSJacob Faibussowitsch     if (ltog_row) PetscCall(ISLocalToGlobalMappingApply(ltog_row, ncoo, coo_i, coo_i));
6399566063dSJacob Faibussowitsch     if (ltog_col) PetscCall(ISLocalToGlobalMappingApply(ltog_col, ncoo, coo_j, coo_j));
6409566063dSJacob Faibussowitsch     PetscCall(MatSetPreallocationCOO(A, ncoo, coo_i, coo_j));
6416834774dSStefano Zampini   }
6426834774dSStefano Zampini   A->preallocated = PETSC_TRUE;
643c3dd2894SJed Brown   PetscFunctionReturn(0);
644c3dd2894SJed Brown }
645c3dd2894SJed Brown 
646c3dd2894SJed Brown /*@
647bfcc3627SStefano Zampini    MatSetValuesCOO - set values at once in a matrix preallocated using MatSetPreallocationCOO()
6487e8381f9SStefano Zampini 
6497e8381f9SStefano Zampini    Collective on Mat
6507e8381f9SStefano Zampini 
6514165533cSJose E. Roman    Input Parameters:
6527e8381f9SStefano Zampini +  A - matrix being preallocated
653bfcc3627SStefano Zampini .  coo_v - the matrix values (can be NULL)
6547e8381f9SStefano Zampini -  imode - the insert mode
6557e8381f9SStefano Zampini 
6567e8381f9SStefano Zampini    Level: beginner
6577e8381f9SStefano Zampini 
658c3dd2894SJed Brown    Notes: The values must follow the order of the indices prescribed with MatSetPreallocationCOO() or MatSetPreallocationCOOLocal().
659735d7f90SBarry Smith           When repeated entries are specified in the COO indices the coo_v values are first properly summed, regardless of the value of imode.
660bfcc3627SStefano Zampini           The imode flag indicates if coo_v must be added to the current values of the matrix (ADD_VALUES) or overwritten (INSERT_VALUES).
661735d7f90SBarry Smith           MatAssemblyBegin() and MatAssemblyEnd() do not need to be called after this routine. It automatically handles the assembly process.
6627e8381f9SStefano Zampini 
663db781477SPatrick Sanan .seealso: `MatSetPreallocationCOO()`, `MatSetPreallocationCOOLocal()`, `InsertMode`, `INSERT_VALUES`, `ADD_VALUES`
6647e8381f9SStefano Zampini @*/
6659371c9d4SSatish Balay PetscErrorCode MatSetValuesCOO(Mat A, const PetscScalar coo_v[], InsertMode imode) {
6667e8381f9SStefano Zampini   PetscErrorCode (*f)(Mat, const PetscScalar[], InsertMode) = NULL;
6677e8381f9SStefano Zampini 
6687e8381f9SStefano Zampini   PetscFunctionBegin;
6697e8381f9SStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
6707e8381f9SStefano Zampini   PetscValidType(A, 1);
6717e8381f9SStefano Zampini   MatCheckPreallocated(A, 1);
672bfcc3627SStefano Zampini   PetscValidLogicalCollectiveEnum(A, imode, 3);
6739566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetValuesCOO_C", &f));
6749566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetVCOO, A, 0, 0, 0));
6757e8381f9SStefano Zampini   if (f) {
6769566063dSJacob Faibussowitsch     PetscCall((*f)(A, coo_v, imode));
6777e8381f9SStefano Zampini   } else { /* allow fallback */
6789566063dSJacob Faibussowitsch     PetscCall(MatSetValuesCOO_Basic(A, coo_v, imode));
6797e8381f9SStefano Zampini   }
6809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetVCOO, A, 0, 0, 0));
6819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
6829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
6837e8381f9SStefano Zampini   PetscFunctionReturn(0);
6847e8381f9SStefano Zampini }
68565a9ecf2SRichard Tran Mills 
68665a9ecf2SRichard Tran Mills /*@
68765a9ecf2SRichard Tran Mills    MatSetBindingPropagates - Sets whether the state of being bound to the CPU for a GPU matrix type propagates to child and some other associated objects
68865a9ecf2SRichard Tran Mills 
68965a9ecf2SRichard Tran Mills    Input Parameters:
69065a9ecf2SRichard Tran Mills +  A - the matrix
69165a9ecf2SRichard Tran Mills -  flg - flag indicating whether the boundtocpu flag should be propagated
69265a9ecf2SRichard Tran Mills 
69365a9ecf2SRichard Tran Mills    Level: developer
69465a9ecf2SRichard Tran Mills 
69565a9ecf2SRichard Tran Mills    Notes:
69665a9ecf2SRichard Tran Mills    If the value of flg is set to true, the following will occur:
69765a9ecf2SRichard Tran Mills 
69865a9ecf2SRichard Tran Mills    MatCreateSubMatrices() and MatCreateRedundantMatrix() will bind created matrices to CPU if the input matrix is bound to the CPU.
69965a9ecf2SRichard Tran Mills    MatCreateVecs() will bind created vectors to CPU if the input matrix is bound to the CPU.
70065a9ecf2SRichard Tran Mills    The bindingpropagates flag itself is also propagated by the above routines.
70165a9ecf2SRichard Tran Mills 
70265a9ecf2SRichard Tran Mills    Developer Notes:
70365a9ecf2SRichard Tran Mills    If the fine-scale DMDA has the -dm_bind_below option set to true, then DMCreateInterpolationScale() calls MatSetBindingPropagates()
70465a9ecf2SRichard Tran Mills    on the restriction/interpolation operator to set the bindingpropagates flag to true.
70565a9ecf2SRichard Tran Mills 
706db781477SPatrick Sanan .seealso: `VecSetBindingPropagates()`, `MatGetBindingPropagates()`
70765a9ecf2SRichard Tran Mills @*/
7089371c9d4SSatish Balay PetscErrorCode MatSetBindingPropagates(Mat A, PetscBool flg) {
70965a9ecf2SRichard Tran Mills   PetscFunctionBegin;
71065a9ecf2SRichard Tran Mills   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
71165a9ecf2SRichard Tran Mills #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA)
71265a9ecf2SRichard Tran Mills   A->bindingpropagates = flg;
71365a9ecf2SRichard Tran Mills #endif
71465a9ecf2SRichard Tran Mills   PetscFunctionReturn(0);
71565a9ecf2SRichard Tran Mills }
716e9c74fd6SRichard Tran Mills 
717e9c74fd6SRichard Tran Mills /*@
718e9c74fd6SRichard Tran Mills    MatGetBindingPropagates - Gets whether the state of being bound to the CPU for a GPU matrix type propagates to child and some other associated objects
719e9c74fd6SRichard Tran Mills 
720e9c74fd6SRichard Tran Mills    Input Parameter:
721e9c74fd6SRichard Tran Mills .  A - the matrix
722e9c74fd6SRichard Tran Mills 
723e9c74fd6SRichard Tran Mills    Output Parameter:
724e9c74fd6SRichard Tran Mills .  flg - flag indicating whether the boundtocpu flag will be propagated
725e9c74fd6SRichard Tran Mills 
726e9c74fd6SRichard Tran Mills    Level: developer
727e9c74fd6SRichard Tran Mills 
728db781477SPatrick Sanan .seealso: `MatSetBindingPropagates()`
729e9c74fd6SRichard Tran Mills @*/
7309371c9d4SSatish Balay PetscErrorCode MatGetBindingPropagates(Mat A, PetscBool *flg) {
731e9c74fd6SRichard Tran Mills   PetscFunctionBegin;
732e9c74fd6SRichard Tran Mills   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
733e9c74fd6SRichard Tran Mills   PetscValidBoolPointer(flg, 2);
734e9c74fd6SRichard Tran Mills #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA)
735e9c74fd6SRichard Tran Mills   *flg = A->bindingpropagates;
736e9c74fd6SRichard Tran Mills #else
737e9c74fd6SRichard Tran Mills   *flg = PETSC_FALSE;
738e9c74fd6SRichard Tran Mills #endif
739e9c74fd6SRichard Tran Mills   PetscFunctionReturn(0);
740e9c74fd6SRichard Tran Mills }
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