17807a1faSBarry Smith 2273d9f13SBarry Smith #include "src/mat/matimpl.h" /*I "petscmat.h" I*/ 3325e03aeSBarry Smith #include "petscsys.h" 47807a1faSBarry Smith 54a2ae208SSatish Balay #undef __FUNCT__ 64a2ae208SSatish Balay #define __FUNCT__ "MatPublish_Base" 76849ba73SBarry Smith static PetscErrorCode MatPublish_Base(PetscObject obj) 835d8aa7fSBarry Smith { 935d8aa7fSBarry Smith PetscFunctionBegin; 1035d8aa7fSBarry Smith PetscFunctionReturn(0); 1135d8aa7fSBarry Smith } 1235d8aa7fSBarry Smith 1335d8aa7fSBarry Smith 144a2ae208SSatish Balay #undef __FUNCT__ 154a2ae208SSatish Balay #define __FUNCT__ "MatCreate" 16325ab940SBarry Smith /*@C 1769dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 187e5f4302SBarry Smith from either a call to MatSetType() or from the options database 197e5f4302SBarry Smith with a call to MatSetFromOptions(). The default matrix type is 207e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() or MatCreateMPIAIJ() 217e5f4302SBarry Smith if you do not set a type in the options database. If you never 227e5f4302SBarry Smith call MatSetType() or MatSetFromOptions() it will generate an 23f8ab6608SSatish Balay error when you try to use the matrix. 2483e1b59cSLois Curfman McInnes 25cb13003dSBarry Smith Collective on MPI_Comm 26cb13003dSBarry Smith 277807a1faSBarry Smith Input Parameters: 2882b900a8SBarry Smith + m - number of local rows (or PETSC_DECIDE) 2982b900a8SBarry Smith . n - number of local columns (or PETSC_DECIDE) 3082b900a8SBarry Smith . M - number of global rows (or PETSC_DETERMINE) 3182b900a8SBarry Smith . N - number of global columns (or PETSC_DETERMINE) 32cb13003dSBarry Smith - comm - MPI communicator 337807a1faSBarry Smith 347807a1faSBarry Smith Output Parameter: 35dc401e71SLois Curfman McInnes . A - the matrix 36e0b365e2SLois Curfman McInnes 37273d9f13SBarry Smith Options Database Keys: 38273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 39273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 40273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 41273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 42273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 43273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 44273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 45273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 46273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 47e0b365e2SLois Curfman McInnes 4883e1b59cSLois Curfman McInnes Even More Options Database Keys: 4983e1b59cSLois Curfman McInnes See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 5083e1b59cSLois Curfman McInnes for additional format-specific options. 51e0b365e2SLois Curfman McInnes 52bd9ce289SLois Curfman McInnes Notes: 53ec6e0d80SSatish Balay If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the 54ec6e0d80SSatish Balay user must ensure that they are chosen to be compatible with the 55ec6e0d80SSatish Balay vectors. To do this, one first considers the matrix-vector product 56ec6e0d80SSatish Balay 'y = A x'. The 'm' that is used in the above routine must match the 57ec6e0d80SSatish Balay local size used in the vector creation routine VecCreateMPI() for 'y'. 58ec6e0d80SSatish Balay Likewise, the 'n' used must match that used as the local size in 59ec6e0d80SSatish Balay VecCreateMPI() for 'x'. 60ec6e0d80SSatish Balay 61273d9f13SBarry Smith Level: beginner 62273d9f13SBarry Smith 63a2fc510eSBarry Smith User manual sections: 64a2fc510eSBarry Smith + sec_matcreate 65a2fc510eSBarry Smith - chapter_matrices 66a2fc510eSBarry Smith 67273d9f13SBarry Smith .keywords: matrix, create 68273d9f13SBarry Smith 69273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 70273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 71273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 72273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 73273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 74273d9f13SBarry Smith MatConvert() 75273d9f13SBarry Smith @*/ 7638baddfdSBarry Smith PetscErrorCode MatCreate(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A) 77273d9f13SBarry Smith { 78273d9f13SBarry Smith Mat B; 798ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 80dfbe8321SBarry Smith PetscErrorCode ierr; 818ba1e511SMatthew Knepley #endif 82273d9f13SBarry Smith 83273d9f13SBarry Smith PetscFunctionBegin; 844482741eSBarry Smith PetscValidPointer(A,6); 8577431f27SBarry Smith if (M > 0 && m > M) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local column size %D cannot be larger than global column size %D",m,M); 8677431f27SBarry Smith if (N > 0 && n > N) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local row size %D cannot be larger than global row size %D",n,N); 8797f1f81fSBarry Smith 888ba1e511SMatthew Knepley *A = PETSC_NULL; 898ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 908ba1e511SMatthew Knepley ierr = MatInitializePackage(PETSC_NULL);CHKERRQ(ierr); 918ba1e511SMatthew Knepley #endif 928ba1e511SMatthew Knepley 93*52e6d16bSBarry Smith ierr = PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,0,"Mat",comm,MatDestroy,MatView);CHKERRQ(ierr); 94273d9f13SBarry Smith 95273d9f13SBarry Smith B->m = m; 96273d9f13SBarry Smith B->n = n; 97273d9f13SBarry Smith B->M = M; 98273d9f13SBarry Smith B->N = N; 99521d7252SBarry Smith B->bs = 1; 100273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 10135d8aa7fSBarry Smith B->bops->publish = MatPublish_Base; 102273d9f13SBarry Smith *A = B; 103273d9f13SBarry Smith PetscFunctionReturn(0); 104273d9f13SBarry Smith } 105273d9f13SBarry Smith 1064a2ae208SSatish Balay #undef __FUNCT__ 1074a2ae208SSatish Balay #define __FUNCT__ "MatSetFromOptions" 108273d9f13SBarry Smith /*@C 109273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 110273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 111273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 1127e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() and MatCreateMPIAIJ() if 1137e5f4302SBarry Smith you do not select a type in the options database. 114273d9f13SBarry Smith 115273d9f13SBarry Smith Collective on Mat 116273d9f13SBarry Smith 117273d9f13SBarry Smith Input Parameter: 118273d9f13SBarry Smith . A - the matrix 119273d9f13SBarry Smith 120273d9f13SBarry Smith Options Database Keys: 121273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 122273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 123273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 124273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 125273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 126273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 127273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 128273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 129273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 130273d9f13SBarry Smith 131273d9f13SBarry Smith Even More Options Database Keys: 132273d9f13SBarry Smith See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 133273d9f13SBarry Smith for additional format-specific options. 134bd9ce289SLois Curfman McInnes 1351d69843bSLois Curfman McInnes Level: beginner 1361d69843bSLois Curfman McInnes 137dc401e71SLois Curfman McInnes .keywords: matrix, create 138e0b365e2SLois Curfman McInnes 139fafbff53SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 140fafbff53SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 14139ddd567SLois Curfman McInnes MatCreateSeqDense(), MatCreateMPIDense(), 142a209d233SLois Curfman McInnes MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 143a209d233SLois Curfman McInnes MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 144273d9f13SBarry Smith MatConvert() 1457807a1faSBarry Smith @*/ 146dfbe8321SBarry Smith PetscErrorCode MatSetFromOptions(Mat B) 1477807a1faSBarry Smith { 148dfbe8321SBarry Smith PetscErrorCode ierr; 149273d9f13SBarry Smith char mtype[256]; 150273d9f13SBarry Smith PetscTruth flg; 151dbb450caSBarry Smith 1523a40ed3dSBarry Smith PetscFunctionBegin; 153b0a32e0cSBarry Smith ierr = PetscOptionsGetString(B->prefix,"-mat_type",mtype,256,&flg);CHKERRQ(ierr); 154273d9f13SBarry Smith if (flg) { 155273d9f13SBarry Smith ierr = MatSetType(B,mtype);CHKERRQ(ierr); 156273d9f13SBarry Smith } 157273d9f13SBarry Smith if (!B->type_name) { 15830735b05SKris Buschelman ierr = MatSetType(B,MATAIJ);CHKERRQ(ierr); 159dfa27b74SSatish Balay } 1603a40ed3dSBarry Smith PetscFunctionReturn(0); 1617807a1faSBarry Smith } 1627807a1faSBarry Smith 1634a2ae208SSatish Balay #undef __FUNCT__ 1644a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation" 165273d9f13SBarry Smith /*@C 166273d9f13SBarry Smith MatSetUpPreallocation 167dae03382SLois Curfman McInnes 168273d9f13SBarry Smith Collective on Mat 169dae03382SLois Curfman McInnes 170273d9f13SBarry Smith Input Parameter: 171273d9f13SBarry Smith . A - the matrix 172d5d45c9bSBarry Smith 173273d9f13SBarry Smith Level: beginner 174d5d45c9bSBarry Smith 175273d9f13SBarry Smith .keywords: matrix, create 176273d9f13SBarry Smith 177273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 178273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 179273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 180273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 181273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 182273d9f13SBarry Smith MatConvert() 183273d9f13SBarry Smith @*/ 184dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation(Mat B) 185273d9f13SBarry Smith { 186dfbe8321SBarry Smith PetscErrorCode ierr; 187273d9f13SBarry Smith 188273d9f13SBarry Smith PetscFunctionBegin; 189273d9f13SBarry Smith if (B->ops->setuppreallocation) { 1908ba1e511SMatthew Knepley PetscLogInfo(B,"MatSetUpPreallocation: Warning not preallocating matrix storage"); 191273d9f13SBarry Smith ierr = (*B->ops->setuppreallocation)(B);CHKERRQ(ierr); 192273d9f13SBarry Smith B->ops->setuppreallocation = 0; 193273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 194273d9f13SBarry Smith } 195273d9f13SBarry Smith PetscFunctionReturn(0); 196273d9f13SBarry Smith } 197273d9f13SBarry Smith 198273d9f13SBarry Smith /* 199273d9f13SBarry Smith Copies from Cs header to A 200273d9f13SBarry Smith */ 2014a2ae208SSatish Balay #undef __FUNCT__ 2024a2ae208SSatish Balay #define __FUNCT__ "MatHeaderCopy" 203dfbe8321SBarry Smith PetscErrorCode MatHeaderCopy(Mat A,Mat C) 204273d9f13SBarry Smith { 205dfbe8321SBarry Smith PetscErrorCode ierr; 206d44834fbSBarry Smith PetscInt refct; 207273d9f13SBarry Smith PetscOps *Abops; 208273d9f13SBarry Smith MatOps Aops; 209273d9f13SBarry Smith char *mtype,*mname; 21030735b05SKris Buschelman void *spptr; 211273d9f13SBarry Smith 212273d9f13SBarry Smith PetscFunctionBegin; 213273d9f13SBarry Smith /* free all the interior data structures from mat */ 214273d9f13SBarry Smith ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 215273d9f13SBarry Smith 2168a124369SBarry Smith ierr = PetscMapDestroy(A->rmap);CHKERRQ(ierr); 2178a124369SBarry Smith ierr = PetscMapDestroy(A->cmap);CHKERRQ(ierr); 218273d9f13SBarry Smith 219273d9f13SBarry Smith /* save the parts of A we need */ 220273d9f13SBarry Smith Abops = A->bops; 221273d9f13SBarry Smith Aops = A->ops; 222273d9f13SBarry Smith refct = A->refct; 223273d9f13SBarry Smith mtype = A->type_name; 224273d9f13SBarry Smith mname = A->name; 22530735b05SKris Buschelman spptr = A->spptr; 22630735b05SKris Buschelman 22730735b05SKris Buschelman if (C->spptr) { 22830735b05SKris Buschelman ierr = PetscFree(C->spptr);CHKERRQ(ierr); 22930735b05SKris Buschelman C->spptr = PETSC_NULL; 23030735b05SKris Buschelman } 231273d9f13SBarry Smith 232273d9f13SBarry Smith /* copy C over to A */ 233273d9f13SBarry Smith ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 234273d9f13SBarry Smith 235273d9f13SBarry Smith /* return the parts of A we saved */ 236273d9f13SBarry Smith A->bops = Abops; 237273d9f13SBarry Smith A->ops = Aops; 238273d9f13SBarry Smith A->qlist = 0; 239273d9f13SBarry Smith A->refct = refct; 240273d9f13SBarry Smith A->type_name = mtype; 241273d9f13SBarry Smith A->name = mname; 24230735b05SKris Buschelman A->spptr = spptr; 243273d9f13SBarry Smith 244d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(C);CHKERRQ(ierr); 245273d9f13SBarry Smith PetscFunctionReturn(0); 246273d9f13SBarry Smith } 247