1af0996ceSBarry Smith #include <petsc/private/matimpl.h> /*I "petscmat.h" I*/ 27807a1faSBarry Smith 3*d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatSetBlockSizes_Default(Mat mat, PetscInt rbs, PetscInt cbs) 4*d71ae5a4SJacob Faibussowitsch { 546533700Sstefano_zampini PetscFunctionBegin; 65c577a9aSstefano_zampini if (!mat->preallocated) PetscFunctionReturn(0); 7aed4548fSBarry Smith PetscCheck(mat->rmap->bs <= 0 || mat->rmap->bs == rbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Cannot change row block size %" PetscInt_FMT " to %" PetscInt_FMT, mat->rmap->bs, rbs); 8aed4548fSBarry Smith PetscCheck(mat->cmap->bs <= 0 || mat->cmap->bs == cbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Cannot change column block size %" PetscInt_FMT " to %" PetscInt_FMT, mat->cmap->bs, cbs); 946533700Sstefano_zampini PetscFunctionReturn(0); 1046533700Sstefano_zampini } 1146533700Sstefano_zampini 12*d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatShift_Basic(Mat Y, PetscScalar a) 13*d71ae5a4SJacob Faibussowitsch { 147d68702bSBarry Smith PetscInt i, start, end; 157d68702bSBarry Smith PetscScalar alpha = a; 167d68702bSBarry Smith PetscBool prevoption; 177d68702bSBarry Smith 187d68702bSBarry Smith PetscFunctionBegin; 199566063dSJacob Faibussowitsch PetscCall(MatGetOption(Y, MAT_NO_OFF_PROC_ENTRIES, &prevoption)); 209566063dSJacob Faibussowitsch PetscCall(MatSetOption(Y, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 219566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Y, &start, &end)); 227d68702bSBarry Smith for (i = start; i < end; i++) { 2348a46eb9SPierre Jolivet if (i < Y->cmap->N) PetscCall(MatSetValues(Y, 1, &i, 1, &i, &alpha, ADD_VALUES)); 24ab6153dcSStefano Zampini } 259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Y, MAT_FINAL_ASSEMBLY)); 269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Y, MAT_FINAL_ASSEMBLY)); 279566063dSJacob Faibussowitsch PetscCall(MatSetOption(Y, MAT_NO_OFF_PROC_ENTRIES, prevoption)); 287d68702bSBarry Smith PetscFunctionReturn(0); 297d68702bSBarry Smith } 307d68702bSBarry Smith 3105869f15SSatish Balay /*@ 3269dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 3311a5261eSBarry Smith from either a call to `MatSetType()` or from the options database 3411a5261eSBarry Smith with a call to `MatSetFromOptions()`. The default matrix type is 3511a5261eSBarry Smith `MATAIJ`, using the routines `MatCreateSeqAIJ()` or `MatCreateAIJ()` 367e5f4302SBarry Smith if you do not set a type in the options database. If you never 3711a5261eSBarry Smith call `MatSetType()` or `MatSetFromOptions()` it will generate an 38f8ab6608SSatish Balay error when you try to use the matrix. 3983e1b59cSLois Curfman McInnes 40d083f849SBarry Smith Collective 41cb13003dSBarry Smith 42f69a0ea3SMatthew Knepley Input Parameter: 43f69a0ea3SMatthew Knepley . comm - MPI communicator 447807a1faSBarry Smith 457807a1faSBarry Smith Output Parameter: 46dc401e71SLois Curfman McInnes . A - the matrix 47e0b365e2SLois Curfman McInnes 48273d9f13SBarry Smith Options Database Keys: 4911a5261eSBarry Smith + -mat_type seqaij - `MATSEQAIJ` type, uses `MatCreateSeqAIJ()` 5011a5261eSBarry Smith . -mat_type mpiaij - `MATMPIAIJ` type, uses `MatCreateAIJ()` 5111a5261eSBarry Smith . -mat_type seqdense - `MATSEQDENSE`, uses `MatCreateSeqDense()` 5211a5261eSBarry Smith . -mat_type mpidense - `MATMPIDENSE` type, uses `MatCreateDense()` 5311a5261eSBarry Smith . -mat_type seqbaij - `MATSEQBAIJ` type, uses `MatCreateSeqBAIJ()` 5411a5261eSBarry Smith - -mat_type mpibaij - `MATMPIBAIJ` type, uses `MatCreateBAIJ()` 55e0b365e2SLois Curfman McInnes 5683e1b59cSLois Curfman McInnes Even More Options Database Keys: 5711a5261eSBarry Smith See the manpages for particular formats (e.g., `MatCreateSeqAIJ()`) 5883e1b59cSLois Curfman McInnes for additional format-specific options. 59e0b365e2SLois Curfman McInnes 60273d9f13SBarry Smith Level: beginner 61273d9f13SBarry Smith 6211a5261eSBarry Smith `.seealso: `MatCreateSeqAIJ()`, `MatCreateAIJ()`, 63db781477SPatrick Sanan `MatCreateSeqDense()`, `MatCreateDense()`, 64db781477SPatrick Sanan `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, 65db781477SPatrick Sanan `MatCreateSeqSBAIJ()`, `MatCreateSBAIJ()`, 66db781477SPatrick Sanan `MatConvert()` 67273d9f13SBarry Smith @*/ 68*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreate(MPI_Comm comm, Mat *A) 69*d71ae5a4SJacob Faibussowitsch { 70273d9f13SBarry Smith Mat B; 71273d9f13SBarry Smith 72273d9f13SBarry Smith PetscFunctionBegin; 73f69a0ea3SMatthew Knepley PetscValidPointer(A, 2); 7497f1f81fSBarry Smith 750298fd71SBarry Smith *A = NULL; 769566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 778ba1e511SMatthew Knepley 789566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(B, MAT_CLASSID, "Mat", "Matrix", "Mat", comm, MatDestroy, MatView)); 799566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &B->rmap)); 809566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &B->cmap)); 819566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD, &B->defaultvectype)); 823faff063SStefano Zampini PetscCall(PetscStrallocpy(PETSCRANDER48, &B->defaultrandtype)); 8326fbe8dcSKarl Rupp 84b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_UNKNOWN; 85b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_UNKNOWN; 86b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_UNKNOWN; 87b94d7dedSBarry Smith B->spd = PETSC_BOOL3_UNKNOWN; 88b94d7dedSBarry Smith B->symmetry_eternal = PETSC_FALSE; 89b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_FALSE; 90b94d7dedSBarry Smith 9194342113SStefano Zampini B->congruentlayouts = PETSC_DECIDE; 92273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 936f3d89d0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 946f3d89d0SStefano Zampini B->boundtocpu = PETSC_TRUE; 956f3d89d0SStefano Zampini #endif 96273d9f13SBarry Smith *A = B; 97273d9f13SBarry Smith PetscFunctionReturn(0); 98273d9f13SBarry Smith } 99273d9f13SBarry Smith 100422a814eSBarry Smith /*@ 10111a5261eSBarry Smith MatSetErrorIfFailure - Causes `Mat` to generate an immediate error, for example a zero pivot, is detected. 102422a814eSBarry Smith 10311a5261eSBarry Smith Logically Collective on mat 104422a814eSBarry Smith 105422a814eSBarry Smith Input Parameters: 10611a5261eSBarry Smith + mat - matrix obtained from `MatCreate()` 10711a5261eSBarry Smith - flg - `PETSC_TRUE` indicates you want the error generated 108422a814eSBarry Smith 109422a814eSBarry Smith Level: advanced 110422a814eSBarry Smith 11111a5261eSBarry Smith Note: 11211a5261eSBarry Smith If this flag is not set then the matrix operation will note the error and continue. The error may cause a later `PC` or `KSP` error 11311a5261eSBarry Smith or result in a `KSPConvergedReason` indicating the method did not converge. 11411a5261eSBarry Smith 11511a5261eSBarry Smith .seealso: `PCSetErrorIfFailure()`, `KSPConvergedReason`, `SNESConvergedReason` 116422a814eSBarry Smith @*/ 117*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetErrorIfFailure(Mat mat, PetscBool flg) 118*d71ae5a4SJacob Faibussowitsch { 119422a814eSBarry Smith PetscFunctionBegin; 120422a814eSBarry Smith PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 121422a814eSBarry Smith PetscValidLogicalCollectiveBool(mat, flg, 2); 12284d44b13SHong Zhang mat->erroriffailure = flg; 123422a814eSBarry Smith PetscFunctionReturn(0); 124422a814eSBarry Smith } 125422a814eSBarry Smith 126f69a0ea3SMatthew Knepley /*@ 127f69a0ea3SMatthew Knepley MatSetSizes - Sets the local and global sizes, and checks to determine compatibility 128f69a0ea3SMatthew Knepley 129f69a0ea3SMatthew Knepley Collective on Mat 130f69a0ea3SMatthew Knepley 131f69a0ea3SMatthew Knepley Input Parameters: 132f69a0ea3SMatthew Knepley + A - the matrix 13311a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 13411a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 13511a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE`) 13611a5261eSBarry Smith - N - number of global columns (or `PETSC_DETERMINE`) 137f69a0ea3SMatthew Knepley 138f69a0ea3SMatthew Knepley Notes: 13911a5261eSBarry Smith m (n) and M (N) cannot be both `PETSC_DECIDE` 14011a5261eSBarry Smith If one processor calls this with M (N) of `PETSC_DECIDE` then all processors must, otherwise the program will hang. 141f69a0ea3SMatthew Knepley 14211a5261eSBarry Smith If `PETSC_DECIDE` is not used for the arguments 'm' and 'n', then the 143f69a0ea3SMatthew Knepley user must ensure that they are chosen to be compatible with the 144f69a0ea3SMatthew Knepley vectors. To do this, one first considers the matrix-vector product 145f69a0ea3SMatthew Knepley 'y = A x'. The 'm' that is used in the above routine must match the 146f69a0ea3SMatthew Knepley local size used in the vector creation routine VecCreateMPI() for 'y'. 147f69a0ea3SMatthew Knepley Likewise, the 'n' used must match that used as the local size in 14811a5261eSBarry Smith `VecCreateMPI()` for 'x'. 149f69a0ea3SMatthew Knepley 150f73d5cc4SBarry Smith You cannot change the sizes once they have been set. 151f73d5cc4SBarry Smith 15211a5261eSBarry Smith The sizes must be set before `MatSetUp()` or MatXXXSetPreallocation() is called. 153f73d5cc4SBarry Smith 154f69a0ea3SMatthew Knepley Level: beginner 155f69a0ea3SMatthew Knepley 156db781477SPatrick Sanan .seealso: `MatGetSize()`, `PetscSplitOwnership()` 157f69a0ea3SMatthew Knepley @*/ 158*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) 159*d71ae5a4SJacob Faibussowitsch { 160f69a0ea3SMatthew Knepley PetscFunctionBegin; 1610700a824SBarry Smith PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 162a69c7061SStefano Zampini PetscValidLogicalCollectiveInt(A, M, 4); 163a69c7061SStefano Zampini PetscValidLogicalCollectiveInt(A, N, 5); 164aed4548fSBarry Smith PetscCheck(M <= 0 || m <= M, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local row size %" PetscInt_FMT " cannot be larger than global row size %" PetscInt_FMT, m, M); 165aed4548fSBarry Smith PetscCheck(N <= 0 || n <= N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local column size %" PetscInt_FMT " cannot be larger than global column size %" PetscInt_FMT, n, N); 1669371c9d4SSatish Balay PetscCheck((A->rmap->n < 0 || A->rmap->N < 0) || (A->rmap->n == m && (M <= 0 || A->rmap->N == M)), PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change/reset row sizes to %" PetscInt_FMT " local %" PetscInt_FMT " global after previously setting them to %" PetscInt_FMT " local %" PetscInt_FMT " global", m, M, 1679371c9d4SSatish Balay A->rmap->n, A->rmap->N); 1689371c9d4SSatish Balay PetscCheck((A->cmap->n < 0 || A->cmap->N < 0) || (A->cmap->n == n && (N <= 0 || A->cmap->N == N)), PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change/reset column sizes to %" PetscInt_FMT " local %" PetscInt_FMT " global after previously setting them to %" PetscInt_FMT " local %" PetscInt_FMT " global", n, N, 1699371c9d4SSatish Balay A->cmap->n, A->cmap->N); 170d0f46423SBarry Smith A->rmap->n = m; 171d0f46423SBarry Smith A->cmap->n = n; 17259cb773eSBarry Smith A->rmap->N = M > -1 ? M : A->rmap->N; 17359cb773eSBarry Smith A->cmap->N = N > -1 ? N : A->cmap->N; 174f69a0ea3SMatthew Knepley PetscFunctionReturn(0); 175f69a0ea3SMatthew Knepley } 176f69a0ea3SMatthew Knepley 17705869f15SSatish Balay /*@ 178273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 179273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 180273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 18111a5261eSBarry Smith `MATAIJ`, using the routines `MatCreateSeqAIJ()` and `MatCreateAIJ()` if 1827e5f4302SBarry Smith you do not select a type in the options database. 183273d9f13SBarry Smith 18411a5261eSBarry Smith Collective on B 185273d9f13SBarry Smith 186273d9f13SBarry Smith Input Parameter: 187273d9f13SBarry Smith . A - the matrix 188273d9f13SBarry Smith 189273d9f13SBarry Smith Options Database Keys: 19011a5261eSBarry Smith + -mat_type seqaij - `MATSEQAIJ` type, uses `MatCreateSeqAIJ()` 19111a5261eSBarry Smith . -mat_type mpiaij - `MATMPIAIJ` type, uses `MatCreateAIJ()` 19211a5261eSBarry Smith . -mat_type seqdense - `MATSEQDENSE` type, uses `MatCreateSeqDense()` 19311a5261eSBarry Smith . -mat_type mpidense - `MATMPIDENSE`, uses `MatCreateDense()` 19411a5261eSBarry Smith . -mat_type seqbaij - `MATSEQBAIJ`, uses `MatCreateSeqBAIJ()` 19511a5261eSBarry Smith - -mat_type mpibaij - `MATMPIBAIJ`, uses `MatCreateBAIJ()` 196273d9f13SBarry Smith 197273d9f13SBarry Smith Even More Options Database Keys: 19811a5261eSBarry Smith See the manpages for particular formats (e.g., `MatCreateSeqAIJ()`) 199273d9f13SBarry Smith for additional format-specific options. 200bd9ce289SLois Curfman McInnes 2011d69843bSLois Curfman McInnes Level: beginner 2021d69843bSLois Curfman McInnes 203db781477SPatrick Sanan .seealso: `MatCreateSeqAIJ(()`, `MatCreateAIJ()`, 204db781477SPatrick Sanan `MatCreateSeqDense()`, `MatCreateDense()`, 205db781477SPatrick Sanan `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, 206db781477SPatrick Sanan `MatCreateSeqSBAIJ()`, `MatCreateSBAIJ()`, 207db781477SPatrick Sanan `MatConvert()` 2087807a1faSBarry Smith @*/ 209*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions(Mat B) 210*d71ae5a4SJacob Faibussowitsch { 211f3be49caSLisandro Dalcin const char *deft = MATAIJ; 212f3be49caSLisandro Dalcin char type[256]; 21369df5c0cSJed Brown PetscBool flg, set; 21416e04d98SRichard Tran Mills PetscInt bind_below = 0; 215dbb450caSBarry Smith 2163a40ed3dSBarry Smith PetscFunctionBegin; 2170700a824SBarry Smith PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 218f3be49caSLisandro Dalcin 219d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)B); 220535b19f3SBarry Smith 221535b19f3SBarry Smith if (B->rmap->bs < 0) { 222535b19f3SBarry Smith PetscInt newbs = -1; 2239566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-mat_block_size", "Set the blocksize used to store the matrix", "MatSetBlockSize", newbs, &newbs, &flg)); 224535b19f3SBarry Smith if (flg) { 2259566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, newbs)); 2269566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, newbs)); 227535b19f3SBarry Smith } 228535b19f3SBarry Smith } 229535b19f3SBarry Smith 2309566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-mat_type", "Matrix type", "MatSetType", MatList, deft, type, 256, &flg)); 231273d9f13SBarry Smith if (flg) { 2329566063dSJacob Faibussowitsch PetscCall(MatSetType(B, type)); 233f3be49caSLisandro Dalcin } else if (!((PetscObject)B)->type_name) { 2349566063dSJacob Faibussowitsch PetscCall(MatSetType(B, deft)); 235273d9f13SBarry Smith } 236f3be49caSLisandro Dalcin 2379566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_is_symmetric", "Checks if mat is symmetric on MatAssemblyEnd()", "MatIsSymmetric", &B->checksymmetryonassembly)); 2389566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_is_symmetric", "Checks if mat is symmetric on MatAssemblyEnd()", "MatIsSymmetric", B->checksymmetrytol, &B->checksymmetrytol, NULL)); 2399566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_null_space_test", "Checks if provided null space is correct in MatAssemblyEnd()", "MatSetNullSpaceTest", B->checknullspaceonassembly, &B->checknullspaceonassembly, NULL)); 2409566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_error_if_failure", "Generate an error if an error occurs when factoring the matrix", "MatSetErrorIfFailure", B->erroriffailure, &B->erroriffailure, NULL)); 241840d65ccSBarry Smith 242dbbe0bcdSBarry Smith PetscTryTypeMethod(B, setfromoptions, PetscOptionsObject); 243f3be49caSLisandro Dalcin 24469df5c0cSJed Brown flg = PETSC_FALSE; 2459566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_new_nonzero_location_err", "Generate an error if new nonzeros are created in the matrix structure (useful to test preallocation)", "MatSetOption", flg, &flg, &set)); 2469566063dSJacob Faibussowitsch if (set) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, flg)); 24769df5c0cSJed Brown flg = PETSC_FALSE; 2489566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_new_nonzero_allocation_err", "Generate an error if new nonzeros are allocated in the matrix structure (useful to test preallocation)", "MatSetOption", flg, &flg, &set)); 2499566063dSJacob Faibussowitsch if (set) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, flg)); 250478db826SMatthew G. Knepley flg = PETSC_FALSE; 2519566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_ignore_zero_entries", "For AIJ/IS matrices this will stop zero values from creating a zero location in the matrix", "MatSetOption", flg, &flg, &set)); 2529566063dSJacob Faibussowitsch if (set) PetscCall(MatSetOption(B, MAT_IGNORE_ZERO_ENTRIES, flg)); 25369df5c0cSJed Brown 2541a2c6b5cSJunchao Zhang flg = PETSC_FALSE; 2559566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_form_explicit_transpose", "Hint to form an explicit transpose for operations like MatMultTranspose", "MatSetOption", flg, &flg, &set)); 2569566063dSJacob Faibussowitsch if (set) PetscCall(MatSetOption(B, MAT_FORM_EXPLICIT_TRANSPOSE, flg)); 2571a2c6b5cSJunchao Zhang 25816e04d98SRichard Tran Mills /* Bind to CPU if below a user-specified size threshold. 25916e04d98SRichard Tran Mills * This perhaps belongs in the options for the GPU Mat types, but MatBindToCPU() does nothing when called on non-GPU types, 26016e04d98SRichard Tran Mills * and putting it here makes is more maintainable than duplicating this for all. */ 2619566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-mat_bind_below", "Set the size threshold (in local rows) below which the Mat is bound to the CPU", "MatBindToCPU", bind_below, &bind_below, &flg)); 26248a46eb9SPierre Jolivet if (flg && B->rmap->n < bind_below) PetscCall(MatBindToCPU(B, PETSC_TRUE)); 26316e04d98SRichard Tran Mills 2645d973c19SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 265dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)B, PetscOptionsObject)); 266d0609cedSBarry Smith PetscOptionsEnd(); 2673a40ed3dSBarry Smith PetscFunctionReturn(0); 2687807a1faSBarry Smith } 2697807a1faSBarry Smith 270987010e7SBarry Smith /*@C 27111a5261eSBarry Smith MatXAIJSetPreallocation - set preallocation for serial and parallel `MATAIJ`, `MATBAIJ`, and `MATSBAIJ` matrices and their unassembled versions. 27263562e91SJed Brown 27311a5261eSBarry Smith Collective on A 27463562e91SJed Brown 2754165533cSJose E. Roman Input Parameters: 27663562e91SJed Brown + A - matrix being preallocated 27763562e91SJed Brown . bs - block size 27841319c1dSStefano Zampini . dnnz - number of nonzero column blocks per block row of diagonal part of parallel matrix 27941319c1dSStefano Zampini . onnz - number of nonzero column blocks per block row of off-diagonal part of parallel matrix 28041319c1dSStefano Zampini . dnnzu - number of nonzero column blocks per block row of upper-triangular part of diagonal part of parallel matrix 28141319c1dSStefano Zampini - onnzu - number of nonzero column blocks per block row of upper-triangular part of off-diagonal part of parallel matrix 28263562e91SJed Brown 28363562e91SJed Brown Level: beginner 28463562e91SJed Brown 285db781477SPatrick Sanan .seealso: `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`, 286db781477SPatrick Sanan `PetscSplitOwnership()` 28763562e91SJed Brown @*/ 288*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatXAIJSetPreallocation(Mat A, PetscInt bs, const PetscInt dnnz[], const PetscInt onnz[], const PetscInt dnnzu[], const PetscInt onnzu[]) 289*d71ae5a4SJacob Faibussowitsch { 29041319c1dSStefano Zampini PetscInt cbs; 29163562e91SJed Brown void (*aij)(void); 292e8bd9bafSStefano Zampini void (*is)(void); 293990279feSStefano Zampini void (*hyp)(void) = NULL; 29463562e91SJed Brown 29563562e91SJed Brown PetscFunctionBegin; 29641319c1dSStefano Zampini if (bs != PETSC_DECIDE) { /* don't mess with an already set block size */ 2979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(A, bs)); 29841319c1dSStefano Zampini } 2999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 3009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 3019566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(A, &bs, &cbs)); 30241319c1dSStefano Zampini /* these routines assumes bs == cbs, this should be checked somehow */ 3039566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(A, bs, 0, dnnz)); 3049566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, bs, 0, dnnz, 0, onnz)); 3059566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(A, bs, 0, dnnzu)); 3069566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, bs, 0, dnnzu, 0, onnzu)); 30763562e91SJed Brown /* 308e8bd9bafSStefano Zampini In general, we have to do extra work to preallocate for scalar (AIJ) or unassembled (IS) matrices so we check whether it will do any 30963562e91SJed Brown good before going on with it. 31063562e91SJed Brown */ 3119566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJSetPreallocation_C", &aij)); 3129566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatISSetPreallocation_C", &is)); 313990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 3149566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatHYPRESetPreallocation_C", &hyp)); 315990279feSStefano Zampini #endif 31648a46eb9SPierre Jolivet if (!aij && !is && !hyp) PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJSetPreallocation_C", &aij)); 317990279feSStefano Zampini if (aij || is || hyp) { 31841319c1dSStefano Zampini if (bs == cbs && bs == 1) { 3199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(A, 0, dnnz)); 3209566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(A, 0, dnnz, 0, onnz)); 3219566063dSJacob Faibussowitsch PetscCall(MatISSetPreallocation(A, 0, dnnz, 0, onnz)); 322990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 3239566063dSJacob Faibussowitsch PetscCall(MatHYPRESetPreallocation(A, 0, dnnz, 0, onnz)); 324990279feSStefano Zampini #endif 3253e5f4774SJed Brown } else { /* Convert block-row precallocation to scalar-row */ 32663562e91SJed Brown PetscInt i, m, *sdnnz, *sonnz; 3279566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, NULL)); 3289566063dSJacob Faibussowitsch PetscCall(PetscMalloc2((!!dnnz) * m, &sdnnz, (!!onnz) * m, &sonnz)); 329dec54756SJed Brown for (i = 0; i < m; i++) { 33041319c1dSStefano Zampini if (dnnz) sdnnz[i] = dnnz[i / bs] * cbs; 33141319c1dSStefano Zampini if (onnz) sonnz[i] = onnz[i / bs] * cbs; 33263562e91SJed Brown } 3339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(A, 0, dnnz ? sdnnz : NULL)); 3349566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL)); 3359566063dSJacob Faibussowitsch PetscCall(MatISSetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL)); 336990279feSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 3379566063dSJacob Faibussowitsch PetscCall(MatHYPRESetPreallocation(A, 0, dnnz ? sdnnz : NULL, 0, onnz ? sonnz : NULL)); 338990279feSStefano Zampini #endif 3399566063dSJacob Faibussowitsch PetscCall(PetscFree2(sdnnz, sonnz)); 34063562e91SJed Brown } 34163562e91SJed Brown } 34263562e91SJed Brown PetscFunctionReturn(0); 34363562e91SJed Brown } 34463562e91SJed Brown 345273d9f13SBarry Smith /* 346eb6b5d47SBarry Smith Merges some information from Cs header to A; the C object is then destroyed 347d0f46423SBarry Smith 348d0f46423SBarry Smith This is somewhat different from MatHeaderReplace() it would be nice to merge the code 349273d9f13SBarry Smith */ 350*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatHeaderMerge(Mat A, Mat *C) 351*d71ae5a4SJacob Faibussowitsch { 352d44834fbSBarry Smith PetscInt refct; 35373107ff1SLisandro Dalcin PetscOps Abops; 35473107ff1SLisandro Dalcin struct _MatOps Aops; 3554768301cSVaclav Hapla char *mtype, *mname, *mprefix; 3564222ddf1SHong Zhang Mat_Product *product; 35733e6eea4SJose E. Roman Mat_Redundant *redundant; 358d4a972cbSStefano Zampini PetscObjectState state; 359273d9f13SBarry Smith 360273d9f13SBarry Smith PetscFunctionBegin; 3611dc04de0SStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 3621dc04de0SStefano Zampini PetscValidHeaderSpecific(*C, MAT_CLASSID, 2); 3631dc04de0SStefano Zampini if (A == *C) PetscFunctionReturn(0); 3641dc04de0SStefano Zampini PetscCheckSameComm(A, 1, *C, 2); 365273d9f13SBarry Smith /* save the parts of A we need */ 36673107ff1SLisandro Dalcin Abops = ((PetscObject)A)->bops[0]; 36773107ff1SLisandro Dalcin Aops = A->ops[0]; 3687adad957SLisandro Dalcin refct = ((PetscObject)A)->refct; 3695c9eb25fSBarry Smith mtype = ((PetscObject)A)->type_name; 3705c9eb25fSBarry Smith mname = ((PetscObject)A)->name; 371d4a972cbSStefano Zampini state = ((PetscObject)A)->state; 3724768301cSVaclav Hapla mprefix = ((PetscObject)A)->prefix; 3734222ddf1SHong Zhang product = A->product; 37433e6eea4SJose E. Roman redundant = A->redundant; 37530735b05SKris Buschelman 3765c9eb25fSBarry Smith /* zero these so the destroy below does not free them */ 377f4259b30SLisandro Dalcin ((PetscObject)A)->type_name = NULL; 378f4259b30SLisandro Dalcin ((PetscObject)A)->name = NULL; 3795c9eb25fSBarry Smith 380dbbe0bcdSBarry Smith /* 381dbbe0bcdSBarry Smith free all the interior data structures from mat 382dbbe0bcdSBarry Smith cannot use PetscUseTypeMethod(A,destroy); because compiler 383dbbe0bcdSBarry Smith thinks it may print NULL type_name and name 384dbbe0bcdSBarry Smith */ 385dbbe0bcdSBarry Smith PetscTryTypeMethod(A, destroy); 3867c99f97cSSatish Balay 3879566063dSJacob Faibussowitsch PetscCall(PetscFree(A->defaultvectype)); 3883faff063SStefano Zampini PetscCall(PetscFree(A->defaultrandtype)); 3899566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&A->rmap)); 3909566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&A->cmap)); 3919566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDestroy(&((PetscObject)A)->qlist)); 3929566063dSJacob Faibussowitsch PetscCall(PetscObjectListDestroy(&((PetscObject)A)->olist)); 3939566063dSJacob Faibussowitsch PetscCall(PetscComposedQuantitiesDestroy((PetscObject)A)); 394273d9f13SBarry Smith 395273d9f13SBarry Smith /* copy C over to A */ 39626cc229bSBarry Smith PetscCall(PetscFree(A->factorprefix)); 3979566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(A, *C, sizeof(struct _p_Mat))); 398273d9f13SBarry Smith 399273d9f13SBarry Smith /* return the parts of A we saved */ 40073107ff1SLisandro Dalcin ((PetscObject)A)->bops[0] = Abops; 40173107ff1SLisandro Dalcin A->ops[0] = Aops; 4027adad957SLisandro Dalcin ((PetscObject)A)->refct = refct; 4037adad957SLisandro Dalcin ((PetscObject)A)->type_name = mtype; 4047adad957SLisandro Dalcin ((PetscObject)A)->name = mname; 4054768301cSVaclav Hapla ((PetscObject)A)->prefix = mprefix; 406d4a972cbSStefano Zampini ((PetscObject)A)->state = state + 1; 4074222ddf1SHong Zhang A->product = product; 40833e6eea4SJose E. Roman A->redundant = redundant; 409273d9f13SBarry Smith 4105c9eb25fSBarry Smith /* since these two are copied into A we do not want them destroyed in C */ 411f4259b30SLisandro Dalcin ((PetscObject)*C)->qlist = NULL; 412f4259b30SLisandro Dalcin ((PetscObject)*C)->olist = NULL; 41326fbe8dcSKarl Rupp 4149566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(C)); 415273d9f13SBarry Smith PetscFunctionReturn(0); 416273d9f13SBarry Smith } 4178ab5b326SKris Buschelman /* 418eb6b5d47SBarry Smith Replace A's header with that of C; the C object is then destroyed 419d0f46423SBarry Smith 420eb6b5d47SBarry Smith This is essentially code moved from MatDestroy() 421eb6b5d47SBarry Smith 422eb6b5d47SBarry Smith This is somewhat different from MatHeaderMerge() it would be nice to merge the code 423b30237c6SBarry Smith 424b30237c6SBarry Smith Used in DM hence is declared PETSC_EXTERN 4258ab5b326SKris Buschelman */ 426*d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat A, Mat *C) 427*d71ae5a4SJacob Faibussowitsch { 42827b31e29SJed Brown PetscInt refct; 429fefd9316SJose E. Roman PetscObjectState state; 43028be2f97SBarry Smith struct _p_Mat buffer; 43181fa06acSBarry Smith MatStencilInfo stencil; 4328ab5b326SKris Buschelman 4338ab5b326SKris Buschelman PetscFunctionBegin; 43427b31e29SJed Brown PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 43528be2f97SBarry Smith PetscValidHeaderSpecific(*C, MAT_CLASSID, 2); 43628be2f97SBarry Smith if (A == *C) PetscFunctionReturn(0); 43728be2f97SBarry Smith PetscCheckSameComm(A, 1, *C, 2); 438aed4548fSBarry Smith PetscCheck(((PetscObject)*C)->refct == 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "Object C has refct %" PetscInt_FMT " > 1, would leave hanging reference", ((PetscObject)*C)->refct); 4396d7c1e57SBarry Smith 44028be2f97SBarry Smith /* swap C and A */ 44127b31e29SJed Brown refct = ((PetscObject)A)->refct; 442fefd9316SJose E. Roman state = ((PetscObject)A)->state; 44381fa06acSBarry Smith stencil = A->stencil; 4449566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(&buffer, A, sizeof(struct _p_Mat))); 4459566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(A, *C, sizeof(struct _p_Mat))); 4469566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(*C, &buffer, sizeof(struct _p_Mat))); 44727b31e29SJed Brown ((PetscObject)A)->refct = refct; 448fefd9316SJose E. Roman ((PetscObject)A)->state = state + 1; 44981fa06acSBarry Smith A->stencil = stencil; 45026fbe8dcSKarl Rupp 451c32d4117SBarry Smith ((PetscObject)*C)->refct = 1; 4529566063dSJacob Faibussowitsch PetscCall(MatShellSetOperation(*C, MATOP_DESTROY, (void (*)(void))NULL)); 4539566063dSJacob Faibussowitsch PetscCall(MatDestroy(C)); 4548ab5b326SKris Buschelman PetscFunctionReturn(0); 4558ab5b326SKris Buschelman } 456e7e92044SBarry Smith 457e7e92044SBarry Smith /*@ 458b470e4b4SRichard Tran Mills MatBindToCPU - marks a matrix to temporarily stay on the CPU and perform computations on the CPU 459e7e92044SBarry Smith 46011a5261eSBarry Smith Logically collective on A 4612216c58aSStefano Zampini 462e7e92044SBarry Smith Input Parameters: 463e7e92044SBarry Smith + A - the matrix 46411a5261eSBarry Smith - flg - bind to the CPU if value of `PETSC_TRUE` 465e7e92044SBarry Smith 46690ea27d8SSatish Balay Level: intermediate 4672216c58aSStefano Zampini 468db781477SPatrick Sanan .seealso: `MatBoundToCPU()` 469e7e92044SBarry Smith @*/ 470*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatBindToCPU(Mat A, PetscBool flg) 471*d71ae5a4SJacob Faibussowitsch { 4727d871021SStefano Zampini PetscFunctionBegin; 4732ffa8ee7SStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4742ffa8ee7SStefano Zampini PetscValidLogicalCollectiveBool(A, flg, 2); 4752216c58aSStefano Zampini #if defined(PETSC_HAVE_DEVICE) 476b470e4b4SRichard Tran Mills if (A->boundtocpu == flg) PetscFunctionReturn(0); 477b470e4b4SRichard Tran Mills A->boundtocpu = flg; 478dbbe0bcdSBarry Smith PetscTryTypeMethod(A, bindtocpu, flg); 4792216c58aSStefano Zampini #endif 480e7e92044SBarry Smith PetscFunctionReturn(0); 4812216c58aSStefano Zampini } 4822216c58aSStefano Zampini 4832216c58aSStefano Zampini /*@ 4842216c58aSStefano Zampini MatBoundToCPU - query if a matrix is bound to the CPU 4852216c58aSStefano Zampini 4862216c58aSStefano Zampini Input Parameter: 4872216c58aSStefano Zampini . A - the matrix 4882216c58aSStefano Zampini 4892216c58aSStefano Zampini Output Parameter: 4902216c58aSStefano Zampini . flg - the logical flag 4912216c58aSStefano Zampini 4922216c58aSStefano Zampini Level: intermediate 4932216c58aSStefano Zampini 494db781477SPatrick Sanan .seealso: `MatBindToCPU()` 4952216c58aSStefano Zampini @*/ 496*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatBoundToCPU(Mat A, PetscBool *flg) 497*d71ae5a4SJacob Faibussowitsch { 4982ffa8ee7SStefano Zampini PetscFunctionBegin; 4992ffa8ee7SStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 500dadcf809SJacob Faibussowitsch PetscValidBoolPointer(flg, 2); 5012216c58aSStefano Zampini #if defined(PETSC_HAVE_DEVICE) 5022216c58aSStefano Zampini *flg = A->boundtocpu; 5032216c58aSStefano Zampini #else 5042216c58aSStefano Zampini *flg = PETSC_TRUE; 5057d871021SStefano Zampini #endif 5062216c58aSStefano Zampini PetscFunctionReturn(0); 507e7e92044SBarry Smith } 5087e8381f9SStefano Zampini 509*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesCOO_Basic(Mat A, const PetscScalar coo_v[], InsertMode imode) 510*d71ae5a4SJacob Faibussowitsch { 5117e8381f9SStefano Zampini IS is_coo_i, is_coo_j; 5127e8381f9SStefano Zampini const PetscInt *coo_i, *coo_j; 5137e8381f9SStefano Zampini PetscInt n, n_i, n_j; 5147e8381f9SStefano Zampini PetscScalar zero = 0.; 5157e8381f9SStefano Zampini 5167e8381f9SStefano Zampini PetscFunctionBegin; 5179566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_coo_i", (PetscObject *)&is_coo_i)); 5189566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_coo_j", (PetscObject *)&is_coo_j)); 51928b400f6SJacob Faibussowitsch PetscCheck(is_coo_i, PetscObjectComm((PetscObject)A), PETSC_ERR_COR, "Missing coo_i IS"); 52028b400f6SJacob Faibussowitsch PetscCheck(is_coo_j, PetscObjectComm((PetscObject)A), PETSC_ERR_COR, "Missing coo_j IS"); 5219566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(is_coo_i, &n_i)); 5229566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(is_coo_j, &n_j)); 52308401ef6SPierre Jolivet PetscCheck(n_i == n_j, PETSC_COMM_SELF, PETSC_ERR_COR, "Wrong local size %" PetscInt_FMT " != %" PetscInt_FMT, n_i, n_j); 5249566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is_coo_i, &coo_i)); 5259566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is_coo_j, &coo_j)); 52648a46eb9SPierre Jolivet if (imode != ADD_VALUES) PetscCall(MatZeroEntries(A)); 52748a46eb9SPierre Jolivet for (n = 0; n < n_i; n++) PetscCall(MatSetValue(A, coo_i[n], coo_j[n], coo_v ? coo_v[n] : zero, ADD_VALUES)); 5289566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is_coo_i, &coo_i)); 5299566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is_coo_j, &coo_j)); 5307e8381f9SStefano Zampini PetscFunctionReturn(0); 5317e8381f9SStefano Zampini } 5327e8381f9SStefano Zampini 533*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_Basic(Mat A, PetscCount ncoo, const PetscInt coo_i[], const PetscInt coo_j[]) 534*d71ae5a4SJacob Faibussowitsch { 5357e8381f9SStefano Zampini Mat preallocator; 5367e8381f9SStefano Zampini IS is_coo_i, is_coo_j; 5377e8381f9SStefano Zampini PetscScalar zero = 0.0; 5387e8381f9SStefano Zampini 5397e8381f9SStefano Zampini PetscFunctionBegin; 5409566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 5419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 5429566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &preallocator)); 5439566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 5449566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 5459566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(preallocator, A->rmap, A->cmap)); 5469566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 54748a46eb9SPierre Jolivet for (PetscCount n = 0; n < ncoo; n++) PetscCall(MatSetValue(preallocator, coo_i[n], coo_j[n], zero, INSERT_VALUES)); 5489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 5499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 5509566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, A)); 5519566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 5522c71b3e2SJacob Faibussowitsch PetscCheck(ncoo <= PETSC_MAX_INT, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ncoo %" PetscCount_FMT " overflowed PetscInt; configure --with-64-bit-indices or request support", ncoo); 5539566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncoo, coo_i, PETSC_COPY_VALUES, &is_coo_i)); 5549566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncoo, coo_j, PETSC_COPY_VALUES, &is_coo_j)); 5559566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_coo_i", (PetscObject)is_coo_i)); 5569566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_coo_j", (PetscObject)is_coo_j)); 5579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is_coo_i)); 5589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is_coo_j)); 5597e8381f9SStefano Zampini PetscFunctionReturn(0); 5607e8381f9SStefano Zampini } 5617e8381f9SStefano Zampini 56256856777SBarry Smith /*@C 563c3dd2894SJed Brown MatSetPreallocationCOO - set preallocation for matrices using a coordinate format of the entries with global indices 5647e8381f9SStefano Zampini 56511a5261eSBarry Smith Collective on A 5667e8381f9SStefano Zampini 5674165533cSJose E. Roman Input Parameters: 5687e8381f9SStefano Zampini + A - matrix being preallocated 56942550becSJunchao Zhang . ncoo - number of entries 5707e8381f9SStefano Zampini . coo_i - row indices 5717e8381f9SStefano Zampini - coo_j - column indices 5727e8381f9SStefano Zampini 5737e8381f9SStefano Zampini Level: beginner 5747e8381f9SStefano Zampini 575394ed5ebSJunchao Zhang Notes: 576e8729f6fSJunchao Zhang The indices coo_i and coo_j may be modified within this function. The caller should not rely on them 577e8729f6fSJunchao Zhang having any specific value after this function returns. The arrays can be freed or reused immediately 578e8729f6fSJunchao Zhang after this function returns. 579e8729f6fSJunchao Zhang 58011a5261eSBarry Smith Entries can be repeated, see `MatSetValuesCOO()`. Entries with negative row or column indices are allowed 58111a5261eSBarry Smith but will be ignored. The corresponding entries in `MatSetValuesCOO()` will be ignored too. Remote entries 582394ed5ebSJunchao Zhang are allowed and will be properly added or inserted to the matrix, unless the matrix option MAT_IGNORE_OFF_PROC_ENTRIES 58311a5261eSBarry Smith is set, in which case remote entries are ignored, or `MAT_NO_OFF_PROC_ENTRIES` is set, in which case an error will be generated. 5847e8381f9SStefano Zampini 585db781477SPatrick Sanan .seealso: `MatSetValuesCOO()`, `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`, `MatSetPreallocationCOOLocal()`, `DMSetMatrixPreallocateSkip()` 5867e8381f9SStefano Zampini @*/ 587*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO(Mat A, PetscCount ncoo, PetscInt coo_i[], PetscInt coo_j[]) 588*d71ae5a4SJacob Faibussowitsch { 58982a78a4eSJed Brown PetscErrorCode (*f)(Mat, PetscCount, const PetscInt[], const PetscInt[]) = NULL; 5907e8381f9SStefano Zampini 5917e8381f9SStefano Zampini PetscFunctionBegin; 5927e8381f9SStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 5937e8381f9SStefano Zampini PetscValidType(A, 1); 5947e8381f9SStefano Zampini if (ncoo) PetscValidIntPointer(coo_i, 3); 5957e8381f9SStefano Zampini if (ncoo) PetscValidIntPointer(coo_j, 4); 5969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 5979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 5989566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetPreallocationCOO_C", &f)); 599cbc6b225SStefano Zampini 6009566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_PreallCOO, A, 0, 0, 0)); 6017e8381f9SStefano Zampini if (f) { 6029566063dSJacob Faibussowitsch PetscCall((*f)(A, ncoo, coo_i, coo_j)); 6037e8381f9SStefano Zampini } else { /* allow fallback, very slow */ 6049566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO_Basic(A, ncoo, coo_i, coo_j)); 6057e8381f9SStefano Zampini } 6069566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_PreallCOO, A, 0, 0, 0)); 6076834774dSStefano Zampini A->preallocated = PETSC_TRUE; 608cbc6b225SStefano Zampini A->nonzerostate++; 6097e8381f9SStefano Zampini PetscFunctionReturn(0); 6107e8381f9SStefano Zampini } 6117e8381f9SStefano Zampini 61256856777SBarry Smith /*@C 613c3dd2894SJed Brown MatSetPreallocationCOOLocal - set preallocation for matrices using a coordinate format of the entries with local indices 614c3dd2894SJed Brown 61511a5261eSBarry Smith Collective on A 616c3dd2894SJed Brown 617c3dd2894SJed Brown Input Parameters: 618c3dd2894SJed Brown + A - matrix being preallocated 619c3dd2894SJed Brown . ncoo - number of entries 620c3dd2894SJed Brown . coo_i - row indices (local numbering; may be modified) 621c3dd2894SJed Brown - coo_j - column indices (local numbering; may be modified) 622c3dd2894SJed Brown 623c3dd2894SJed Brown Level: beginner 624c3dd2894SJed Brown 625c3dd2894SJed Brown Notes: 62611a5261eSBarry Smith The local indices are translated using the local to global mapping, thus `MatSetLocalToGlobalMapping()` must have been 62711a5261eSBarry Smith called prior to this function. For matrices created with `DMCreateMatrix()` the local to global mapping is often already provided. 628c3dd2894SJed Brown 629c3dd2894SJed Brown The indices coo_i and coo_j may be modified within this function. They might be translated to corresponding global 630735d7f90SBarry Smith indices, but the caller should not rely on them having any specific value after this function returns. The arrays 631735d7f90SBarry Smith can be freed or reused immediately after this function returns. 632c3dd2894SJed Brown 63311a5261eSBarry Smith Entries can be repeated, see `MatSetValuesCOO()`. Entries with negative row or column indices are allowed 63411a5261eSBarry Smith but will be ignored. The corresponding entries in `MatSetValuesCOO()` will be ignored too. Remote entries 635394ed5ebSJunchao Zhang are allowed and will be properly added or inserted to the matrix. 636c3dd2894SJed Brown 637db781477SPatrick Sanan .seealso: `MatSetValuesCOO()`, `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatSeqBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocation()`, `MatSeqSBAIJSetPreallocation()`, `MatMPISBAIJSetPreallocation()`, `MatSetPreallocationCOO()`, `DMSetMatrixPreallocateSkip()` 638c3dd2894SJed Brown @*/ 639*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOOLocal(Mat A, PetscCount ncoo, PetscInt coo_i[], PetscInt coo_j[]) 640*d71ae5a4SJacob Faibussowitsch { 6416834774dSStefano Zampini PetscErrorCode (*f)(Mat, PetscCount, PetscInt[], PetscInt[]) = NULL; 642c3dd2894SJed Brown 643c3dd2894SJed Brown PetscFunctionBegin; 644c3dd2894SJed Brown PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 645c3dd2894SJed Brown PetscValidType(A, 1); 646c3dd2894SJed Brown if (ncoo) PetscValidIntPointer(coo_i, 3); 647c3dd2894SJed Brown if (ncoo) PetscValidIntPointer(coo_j, 4); 6486834774dSStefano Zampini PetscCheck(ncoo <= PETSC_MAX_INT, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ncoo %" PetscCount_FMT " overflowed PetscInt; configure --with-64-bit-indices or request support", ncoo); 6499566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 6509566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 651cbc6b225SStefano Zampini 6529566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetPreallocationCOOLocal_C", &f)); 6536834774dSStefano Zampini if (f) { 6549566063dSJacob Faibussowitsch PetscCall((*f)(A, ncoo, coo_i, coo_j)); 655cbc6b225SStefano Zampini A->nonzerostate++; 6566834774dSStefano Zampini } else { 657cbc6b225SStefano Zampini ISLocalToGlobalMapping ltog_row, ltog_col; 6589566063dSJacob Faibussowitsch PetscCall(MatGetLocalToGlobalMapping(A, <og_row, <og_col)); 6599566063dSJacob Faibussowitsch if (ltog_row) PetscCall(ISLocalToGlobalMappingApply(ltog_row, ncoo, coo_i, coo_i)); 6609566063dSJacob Faibussowitsch if (ltog_col) PetscCall(ISLocalToGlobalMappingApply(ltog_col, ncoo, coo_j, coo_j)); 6619566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(A, ncoo, coo_i, coo_j)); 6626834774dSStefano Zampini } 6636834774dSStefano Zampini A->preallocated = PETSC_TRUE; 664c3dd2894SJed Brown PetscFunctionReturn(0); 665c3dd2894SJed Brown } 666c3dd2894SJed Brown 667c3dd2894SJed Brown /*@ 66811a5261eSBarry Smith MatSetValuesCOO - set values at once in a matrix preallocated using `MatSetPreallocationCOO()` 6697e8381f9SStefano Zampini 67011a5261eSBarry Smith Collective on A 6717e8381f9SStefano Zampini 6724165533cSJose E. Roman Input Parameters: 6737e8381f9SStefano Zampini + A - matrix being preallocated 674bfcc3627SStefano Zampini . coo_v - the matrix values (can be NULL) 6757e8381f9SStefano Zampini - imode - the insert mode 6767e8381f9SStefano Zampini 6777e8381f9SStefano Zampini Level: beginner 6787e8381f9SStefano Zampini 67911a5261eSBarry Smith Notes: 68011a5261eSBarry Smith The values must follow the order of the indices prescribed with `MatSetPreallocationCOO()` or `MatSetPreallocationCOOLocal()`. 68111a5261eSBarry Smith 682735d7f90SBarry Smith When repeated entries are specified in the COO indices the coo_v values are first properly summed, regardless of the value of imode. 68311a5261eSBarry Smith The imode flag indicates if coo_v must be added to the current values of the matrix (`ADD_VALUES`) or overwritten (`INSERT_VALUES`). 68411a5261eSBarry Smith 68511a5261eSBarry Smith `MatAssemblyBegin()` and `MatAssemblyEnd()` do not need to be called after this routine. It automatically handles the assembly process. 6867e8381f9SStefano Zampini 687db781477SPatrick Sanan .seealso: `MatSetPreallocationCOO()`, `MatSetPreallocationCOOLocal()`, `InsertMode`, `INSERT_VALUES`, `ADD_VALUES` 6887e8381f9SStefano Zampini @*/ 689*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesCOO(Mat A, const PetscScalar coo_v[], InsertMode imode) 690*d71ae5a4SJacob Faibussowitsch { 6917e8381f9SStefano Zampini PetscErrorCode (*f)(Mat, const PetscScalar[], InsertMode) = NULL; 6927e8381f9SStefano Zampini 6937e8381f9SStefano Zampini PetscFunctionBegin; 6947e8381f9SStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 6957e8381f9SStefano Zampini PetscValidType(A, 1); 6967e8381f9SStefano Zampini MatCheckPreallocated(A, 1); 697bfcc3627SStefano Zampini PetscValidLogicalCollectiveEnum(A, imode, 3); 6989566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSetValuesCOO_C", &f)); 6999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetVCOO, A, 0, 0, 0)); 7007e8381f9SStefano Zampini if (f) { 7019566063dSJacob Faibussowitsch PetscCall((*f)(A, coo_v, imode)); 7027e8381f9SStefano Zampini } else { /* allow fallback */ 7039566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO_Basic(A, coo_v, imode)); 7047e8381f9SStefano Zampini } 7059566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetVCOO, A, 0, 0, 0)); 7069566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 7079566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 7087e8381f9SStefano Zampini PetscFunctionReturn(0); 7097e8381f9SStefano Zampini } 71065a9ecf2SRichard Tran Mills 71165a9ecf2SRichard Tran Mills /*@ 71265a9ecf2SRichard Tran Mills MatSetBindingPropagates - Sets whether the state of being bound to the CPU for a GPU matrix type propagates to child and some other associated objects 71365a9ecf2SRichard Tran Mills 71465a9ecf2SRichard Tran Mills Input Parameters: 71565a9ecf2SRichard Tran Mills + A - the matrix 71665a9ecf2SRichard Tran Mills - flg - flag indicating whether the boundtocpu flag should be propagated 71765a9ecf2SRichard Tran Mills 71865a9ecf2SRichard Tran Mills Level: developer 71965a9ecf2SRichard Tran Mills 72065a9ecf2SRichard Tran Mills Notes: 72165a9ecf2SRichard Tran Mills If the value of flg is set to true, the following will occur: 72265a9ecf2SRichard Tran Mills 72311a5261eSBarry Smith `MatCreateSubMatrices()` and `MatCreateRedundantMatrix()` will bind created matrices to CPU if the input matrix is bound to the CPU. 72411a5261eSBarry Smith 72511a5261eSBarry Smith `MatCreateVecs()` will bind created vectors to CPU if the input matrix is bound to the CPU. 72665a9ecf2SRichard Tran Mills The bindingpropagates flag itself is also propagated by the above routines. 72765a9ecf2SRichard Tran Mills 72811a5261eSBarry Smith Developer Note: 72911a5261eSBarry Smith If the fine-scale `DMDA `has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 73065a9ecf2SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 73165a9ecf2SRichard Tran Mills 732db781477SPatrick Sanan .seealso: `VecSetBindingPropagates()`, `MatGetBindingPropagates()` 73365a9ecf2SRichard Tran Mills @*/ 734*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetBindingPropagates(Mat A, PetscBool flg) 735*d71ae5a4SJacob Faibussowitsch { 73665a9ecf2SRichard Tran Mills PetscFunctionBegin; 73765a9ecf2SRichard Tran Mills PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 73865a9ecf2SRichard Tran Mills #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) 73965a9ecf2SRichard Tran Mills A->bindingpropagates = flg; 74065a9ecf2SRichard Tran Mills #endif 74165a9ecf2SRichard Tran Mills PetscFunctionReturn(0); 74265a9ecf2SRichard Tran Mills } 743e9c74fd6SRichard Tran Mills 744e9c74fd6SRichard Tran Mills /*@ 745e9c74fd6SRichard Tran Mills MatGetBindingPropagates - Gets whether the state of being bound to the CPU for a GPU matrix type propagates to child and some other associated objects 746e9c74fd6SRichard Tran Mills 747e9c74fd6SRichard Tran Mills Input Parameter: 748e9c74fd6SRichard Tran Mills . A - the matrix 749e9c74fd6SRichard Tran Mills 750e9c74fd6SRichard Tran Mills Output Parameter: 751e9c74fd6SRichard Tran Mills . flg - flag indicating whether the boundtocpu flag will be propagated 752e9c74fd6SRichard Tran Mills 753e9c74fd6SRichard Tran Mills Level: developer 754e9c74fd6SRichard Tran Mills 755db781477SPatrick Sanan .seealso: `MatSetBindingPropagates()` 756e9c74fd6SRichard Tran Mills @*/ 757*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBindingPropagates(Mat A, PetscBool *flg) 758*d71ae5a4SJacob Faibussowitsch { 759e9c74fd6SRichard Tran Mills PetscFunctionBegin; 760e9c74fd6SRichard Tran Mills PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 761e9c74fd6SRichard Tran Mills PetscValidBoolPointer(flg, 2); 762e9c74fd6SRichard Tran Mills #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) 763e9c74fd6SRichard Tran Mills *flg = A->bindingpropagates; 764e9c74fd6SRichard Tran Mills #else 765e9c74fd6SRichard Tran Mills *flg = PETSC_FALSE; 766e9c74fd6SRichard Tran Mills #endif 767e9c74fd6SRichard Tran Mills PetscFunctionReturn(0); 768e9c74fd6SRichard Tran Mills } 769