1be1d678aSKris Buschelman #define PETSCMAT_DLL 27807a1faSBarry Smith 3b9147fbbSdalcinl #include "include/private/matimpl.h" /*I "petscmat.h" I*/ 4325e03aeSBarry Smith #include "petscsys.h" 57807a1faSBarry Smith 64a2ae208SSatish Balay #undef __FUNCT__ 74a2ae208SSatish Balay #define __FUNCT__ "MatPublish_Base" 86849ba73SBarry Smith static PetscErrorCode MatPublish_Base(PetscObject obj) 935d8aa7fSBarry Smith { 1035d8aa7fSBarry Smith PetscFunctionBegin; 1135d8aa7fSBarry Smith PetscFunctionReturn(0); 1235d8aa7fSBarry Smith } 1335d8aa7fSBarry Smith 1435d8aa7fSBarry Smith 154a2ae208SSatish Balay #undef __FUNCT__ 164a2ae208SSatish Balay #define __FUNCT__ "MatCreate" 1705869f15SSatish Balay /*@ 1869dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 197e5f4302SBarry Smith from either a call to MatSetType() or from the options database 207e5f4302SBarry Smith with a call to MatSetFromOptions(). The default matrix type is 217e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() or MatCreateMPIAIJ() 227e5f4302SBarry Smith if you do not set a type in the options database. If you never 237e5f4302SBarry Smith call MatSetType() or MatSetFromOptions() it will generate an 24f8ab6608SSatish Balay error when you try to use the matrix. 2583e1b59cSLois Curfman McInnes 26cb13003dSBarry Smith Collective on MPI_Comm 27cb13003dSBarry Smith 28f69a0ea3SMatthew Knepley Input Parameter: 29f69a0ea3SMatthew Knepley . comm - MPI communicator 307807a1faSBarry Smith 317807a1faSBarry Smith Output Parameter: 32dc401e71SLois Curfman McInnes . A - the matrix 33e0b365e2SLois Curfman McInnes 34273d9f13SBarry Smith Options Database Keys: 35273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 36273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 37273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 38273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 39273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 40273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 41273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 42273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 43273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 44e0b365e2SLois Curfman McInnes 4583e1b59cSLois Curfman McInnes Even More Options Database Keys: 4683e1b59cSLois Curfman McInnes See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 4783e1b59cSLois Curfman McInnes for additional format-specific options. 48e0b365e2SLois Curfman McInnes 49bd9ce289SLois Curfman McInnes Notes: 50ec6e0d80SSatish Balay 51273d9f13SBarry Smith Level: beginner 52273d9f13SBarry Smith 53a2fc510eSBarry Smith User manual sections: 54a2fc510eSBarry Smith + sec_matcreate 55a2fc510eSBarry Smith - chapter_matrices 56a2fc510eSBarry Smith 57273d9f13SBarry Smith .keywords: matrix, create 58273d9f13SBarry Smith 59cd05a4c0SHong Zhang .seealso: MatCreateSeqAIJ(), MatCreateMPIAIJ(), 60273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 61273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 62273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 63273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 64273d9f13SBarry Smith MatConvert() 65273d9f13SBarry Smith @*/ 66f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatCreate(MPI_Comm comm,Mat *A) 67273d9f13SBarry Smith { 68273d9f13SBarry Smith Mat B; 69dfbe8321SBarry Smith PetscErrorCode ierr; 70273d9f13SBarry Smith 71273d9f13SBarry Smith PetscFunctionBegin; 72f69a0ea3SMatthew Knepley PetscValidPointer(A,2); 7397f1f81fSBarry Smith 748ba1e511SMatthew Knepley *A = PETSC_NULL; 758ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 768ba1e511SMatthew Knepley ierr = MatInitializePackage(PETSC_NULL);CHKERRQ(ierr); 778ba1e511SMatthew Knepley #endif 788ba1e511SMatthew Knepley 7952e6d16bSBarry Smith ierr = PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,0,"Mat",comm,MatDestroy,MatView);CHKERRQ(ierr); 806148ca0dSBarry Smith ierr = PetscMapInitialize(comm,&B->rmap);CHKERRQ(ierr); 816148ca0dSBarry Smith ierr = PetscMapInitialize(comm,&B->cmap);CHKERRQ(ierr); 82273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 8335d8aa7fSBarry Smith B->bops->publish = MatPublish_Base; 84273d9f13SBarry Smith *A = B; 85273d9f13SBarry Smith PetscFunctionReturn(0); 86273d9f13SBarry Smith } 87273d9f13SBarry Smith 884a2ae208SSatish Balay #undef __FUNCT__ 89f69a0ea3SMatthew Knepley #define __FUNCT__ "MatSetSizes" 90f69a0ea3SMatthew Knepley /*@ 91f69a0ea3SMatthew Knepley MatSetSizes - Sets the local and global sizes, and checks to determine compatibility 92f69a0ea3SMatthew Knepley 93f69a0ea3SMatthew Knepley Collective on Mat 94f69a0ea3SMatthew Knepley 95f69a0ea3SMatthew Knepley Input Parameters: 96f69a0ea3SMatthew Knepley + A - the matrix 97f69a0ea3SMatthew Knepley . m - number of local rows (or PETSC_DECIDE) 98f69a0ea3SMatthew Knepley . n - number of local columns (or PETSC_DECIDE) 99f69a0ea3SMatthew Knepley . M - number of global rows (or PETSC_DETERMINE) 100f69a0ea3SMatthew Knepley - N - number of global columns (or PETSC_DETERMINE) 101f69a0ea3SMatthew Knepley 102f69a0ea3SMatthew Knepley Notes: 103f69a0ea3SMatthew Knepley m (n) and M (N) cannot be both PETSC_DECIDE 104f69a0ea3SMatthew Knepley If one processor calls this with M (N) of PETSC_DECIDE then all processors must, otherwise the program will hang. 105f69a0ea3SMatthew Knepley 106f69a0ea3SMatthew Knepley If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the 107f69a0ea3SMatthew Knepley user must ensure that they are chosen to be compatible with the 108f69a0ea3SMatthew Knepley vectors. To do this, one first considers the matrix-vector product 109f69a0ea3SMatthew Knepley 'y = A x'. The 'm' that is used in the above routine must match the 110f69a0ea3SMatthew Knepley local size used in the vector creation routine VecCreateMPI() for 'y'. 111f69a0ea3SMatthew Knepley Likewise, the 'n' used must match that used as the local size in 112f69a0ea3SMatthew Knepley VecCreateMPI() for 'x'. 113f69a0ea3SMatthew Knepley 114f69a0ea3SMatthew Knepley Level: beginner 115f69a0ea3SMatthew Knepley 116f69a0ea3SMatthew Knepley .seealso: MatGetSize(), PetscSplitOwnership() 117f69a0ea3SMatthew Knepley @*/ 118f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) 119f69a0ea3SMatthew Knepley { 120284134d9SBarry Smith PetscErrorCode ierr; 121284134d9SBarry Smith 122f69a0ea3SMatthew Knepley PetscFunctionBegin; 123f69a0ea3SMatthew Knepley PetscValidHeaderSpecific(A,MAT_COOKIE,1); 124f69a0ea3SMatthew Knepley if (M > 0 && m > M) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local column size %D cannot be larger than global column size %D",m,M); 125f69a0ea3SMatthew Knepley if (N > 0 && n > N) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local row size %D cannot be larger than global row size %D",n,N); 126284134d9SBarry Smith if (A->ops->setsizes) { 127284134d9SBarry Smith /* Since this will not be set until the type has been set, this will NOT be called on the initial 128284134d9SBarry Smith call of MatSetSizes() (which must be called BEFORE MatSetType() */ 129284134d9SBarry Smith ierr = (*A->ops->setsizes)(A,m,n,M,N);CHKERRQ(ierr); 130284134d9SBarry Smith } else { 131899cda47SBarry Smith if ((A->rmap.n >= 0 || A->rmap.N >= 0) && (A->rmap.n != m || A->rmap.N != M)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset row sizes to %D local %D global after previously setting them to %D local %D global",m,M,A->rmap.n,A->rmap.N); 132899cda47SBarry Smith if ((A->cmap.n >= 0 || A->cmap.N >= 0) && (A->cmap.n != n || A->cmap.N != N)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset column sizes to %D local %D global after previously setting them to %D local %D global",n,N,A->cmap.n,A->cmap.N); 133284134d9SBarry Smith } 134899cda47SBarry Smith A->rmap.n = m; 135899cda47SBarry Smith A->cmap.n = n; 136899cda47SBarry Smith A->rmap.N = M; 137899cda47SBarry Smith A->cmap.N = N; 138f69a0ea3SMatthew Knepley PetscFunctionReturn(0); 139f69a0ea3SMatthew Knepley } 140f69a0ea3SMatthew Knepley 141f69a0ea3SMatthew Knepley #undef __FUNCT__ 1424a2ae208SSatish Balay #define __FUNCT__ "MatSetFromOptions" 14305869f15SSatish Balay /*@ 144273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 145273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 146273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 1477e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() and MatCreateMPIAIJ() if 1487e5f4302SBarry Smith you do not select a type in the options database. 149273d9f13SBarry Smith 150273d9f13SBarry Smith Collective on Mat 151273d9f13SBarry Smith 152273d9f13SBarry Smith Input Parameter: 153273d9f13SBarry Smith . A - the matrix 154273d9f13SBarry Smith 155273d9f13SBarry Smith Options Database Keys: 156273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 157273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 158273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 159273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 160273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 161273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 162273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 163273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 164273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 165273d9f13SBarry Smith 166273d9f13SBarry Smith Even More Options Database Keys: 167273d9f13SBarry Smith See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 168273d9f13SBarry Smith for additional format-specific options. 169bd9ce289SLois Curfman McInnes 1701d69843bSLois Curfman McInnes Level: beginner 1711d69843bSLois Curfman McInnes 172dc401e71SLois Curfman McInnes .keywords: matrix, create 173e0b365e2SLois Curfman McInnes 174fafbff53SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 175fafbff53SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 17639ddd567SLois Curfman McInnes MatCreateSeqDense(), MatCreateMPIDense(), 177a209d233SLois Curfman McInnes MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 178a209d233SLois Curfman McInnes MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 179273d9f13SBarry Smith MatConvert() 1807807a1faSBarry Smith @*/ 181be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetFromOptions(Mat B) 1827807a1faSBarry Smith { 183dfbe8321SBarry Smith PetscErrorCode ierr; 184*f3be49caSLisandro Dalcin const char *deft = MATAIJ; 185*f3be49caSLisandro Dalcin char type[256]; 186273d9f13SBarry Smith PetscTruth flg; 187dbb450caSBarry Smith 1883a40ed3dSBarry Smith PetscFunctionBegin; 189*f3be49caSLisandro Dalcin PetscValidHeaderSpecific(B,MAT_COOKIE,1); 190*f3be49caSLisandro Dalcin 191*f3be49caSLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Matrix options","Mat");CHKERRQ(ierr); 192*f3be49caSLisandro Dalcin 193*f3be49caSLisandro Dalcin if (((PetscObject)B)->type_name) { deft = ((PetscObject)B)->type_name; } 194*f3be49caSLisandro Dalcin ierr = PetscOptionsList("-mat_type","Matrix type","MatSetType",MatList,deft,type,256,&flg);CHKERRQ(ierr); 195273d9f13SBarry Smith if (flg) { 196*f3be49caSLisandro Dalcin ierr = MatSetType(B,type);CHKERRQ(ierr); 197*f3be49caSLisandro Dalcin } else if (!((PetscObject)B)->type_name) { 198*f3be49caSLisandro Dalcin ierr = MatSetType(B,deft);CHKERRQ(ierr); 199273d9f13SBarry Smith } 200*f3be49caSLisandro Dalcin 201*f3be49caSLisandro Dalcin if (B->ops->setfromoptions) { 202*f3be49caSLisandro Dalcin ierr = (*B->ops->setfromoptions)(B);CHKERRQ(ierr); 203593c1905SSatish Balay } 204*f3be49caSLisandro Dalcin 205*f3be49caSLisandro Dalcin ierr = PetscOptionsEnd();CHKERRQ(ierr); 206*f3be49caSLisandro Dalcin 2073a40ed3dSBarry Smith PetscFunctionReturn(0); 2087807a1faSBarry Smith } 2097807a1faSBarry Smith 2104a2ae208SSatish Balay #undef __FUNCT__ 2114a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation" 212273d9f13SBarry Smith /*@C 213273d9f13SBarry Smith MatSetUpPreallocation 214dae03382SLois Curfman McInnes 215273d9f13SBarry Smith Collective on Mat 216dae03382SLois Curfman McInnes 217273d9f13SBarry Smith Input Parameter: 218273d9f13SBarry Smith . A - the matrix 219d5d45c9bSBarry Smith 220273d9f13SBarry Smith Level: beginner 221d5d45c9bSBarry Smith 222273d9f13SBarry Smith .keywords: matrix, create 223273d9f13SBarry Smith 224273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 225273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 226273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 227273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 228273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 229273d9f13SBarry Smith MatConvert() 230273d9f13SBarry Smith @*/ 231be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetUpPreallocation(Mat B) 232273d9f13SBarry Smith { 233dfbe8321SBarry Smith PetscErrorCode ierr; 234273d9f13SBarry Smith 235273d9f13SBarry Smith PetscFunctionBegin; 23617667f90SBarry Smith if (!B->preallocated && B->ops->setuppreallocation) { 237ae15b995SBarry Smith ierr = PetscInfo(B,"Warning not preallocating matrix storage\n");CHKERRQ(ierr); 238273d9f13SBarry Smith ierr = (*B->ops->setuppreallocation)(B);CHKERRQ(ierr); 239273d9f13SBarry Smith } 240210f0121SBarry Smith B->preallocated = PETSC_TRUE; 241273d9f13SBarry Smith PetscFunctionReturn(0); 242273d9f13SBarry Smith } 243273d9f13SBarry Smith 244273d9f13SBarry Smith /* 245273d9f13SBarry Smith Copies from Cs header to A 246273d9f13SBarry Smith */ 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatHeaderCopy" 249dfbe8321SBarry Smith PetscErrorCode MatHeaderCopy(Mat A,Mat C) 250273d9f13SBarry Smith { 251dfbe8321SBarry Smith PetscErrorCode ierr; 252d44834fbSBarry Smith PetscInt refct; 253273d9f13SBarry Smith PetscOps *Abops; 254273d9f13SBarry Smith MatOps Aops; 255273d9f13SBarry Smith char *mtype,*mname; 25630735b05SKris Buschelman void *spptr; 257273d9f13SBarry Smith 258273d9f13SBarry Smith PetscFunctionBegin; 259273d9f13SBarry Smith /* save the parts of A we need */ 260273d9f13SBarry Smith Abops = A->bops; 261273d9f13SBarry Smith Aops = A->ops; 262273d9f13SBarry Smith refct = A->refct; 2637c99f97cSSatish Balay mtype = A->type_name; A->type_name = 0; 2647c99f97cSSatish Balay mname = A->name; A->name = 0; 26530735b05SKris Buschelman spptr = A->spptr; 26630735b05SKris Buschelman 2677c99f97cSSatish Balay /* free all the interior data structures from mat */ 2687c99f97cSSatish Balay ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 2697c99f97cSSatish Balay 27030735b05SKris Buschelman ierr = PetscFree(C->spptr);CHKERRQ(ierr); 27105b42c5fSBarry Smith 272357abbc8SBarry Smith ierr = PetscFree(A->rmap.range);CHKERRQ(ierr); 273357abbc8SBarry Smith ierr = PetscFree(A->cmap.range);CHKERRQ(ierr); 274273d9f13SBarry Smith 275273d9f13SBarry Smith /* copy C over to A */ 276273d9f13SBarry Smith ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 277273d9f13SBarry Smith 278273d9f13SBarry Smith /* return the parts of A we saved */ 279273d9f13SBarry Smith A->bops = Abops; 280273d9f13SBarry Smith A->ops = Aops; 281273d9f13SBarry Smith A->qlist = 0; 282273d9f13SBarry Smith A->refct = refct; 283273d9f13SBarry Smith A->type_name = mtype; 284273d9f13SBarry Smith A->name = mname; 28530735b05SKris Buschelman A->spptr = spptr; 286273d9f13SBarry Smith 287d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(C);CHKERRQ(ierr); 288273d9f13SBarry Smith PetscFunctionReturn(0); 289273d9f13SBarry Smith } 2908ab5b326SKris Buschelman /* 2918ab5b326SKris Buschelman Replace A's header with that of C 2928ab5b326SKris Buschelman This is essentially code moved from MatDestroy 2938ab5b326SKris Buschelman */ 2948ab5b326SKris Buschelman #undef __FUNCT__ 2958ab5b326SKris Buschelman #define __FUNCT__ "MatHeaderReplace" 2968ab5b326SKris Buschelman PetscErrorCode MatHeaderReplace(Mat A,Mat C) 2978ab5b326SKris Buschelman { 2988ab5b326SKris Buschelman PetscErrorCode ierr; 2998ab5b326SKris Buschelman 3008ab5b326SKris Buschelman PetscFunctionBegin; 3018ab5b326SKris Buschelman /* free all the interior data structures from mat */ 3028ab5b326SKris Buschelman ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 303d2c95936SBarry Smith ierr = PetscHeaderDestroy_Private((PetscObject)A);CHKERRQ(ierr); 304357abbc8SBarry Smith ierr = PetscFree(A->rmap.range);CHKERRQ(ierr); 305357abbc8SBarry Smith ierr = PetscFree(A->cmap.range);CHKERRQ(ierr); 306d95db058SSatish Balay ierr = PetscFree(A->spptr);CHKERRQ(ierr); 3078ab5b326SKris Buschelman 3088ab5b326SKris Buschelman /* copy C over to A */ 3098ab5b326SKris Buschelman if (C) { 3108ab5b326SKris Buschelman ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 3118ab5b326SKris Buschelman ierr = PetscLogObjectDestroy((PetscObject)C);CHKERRQ(ierr); 3128ab5b326SKris Buschelman ierr = PetscFree(C);CHKERRQ(ierr); 3138ab5b326SKris Buschelman } 3148ab5b326SKris Buschelman PetscFunctionReturn(0); 3158ab5b326SKris Buschelman } 316