1be1d678aSKris Buschelman #define PETSCMAT_DLL 27807a1faSBarry Smith 3273d9f13SBarry Smith #include "src/mat/matimpl.h" /*I "petscmat.h" I*/ 4325e03aeSBarry Smith #include "petscsys.h" 57807a1faSBarry Smith 64a2ae208SSatish Balay #undef __FUNCT__ 74a2ae208SSatish Balay #define __FUNCT__ "MatPublish_Base" 86849ba73SBarry Smith static PetscErrorCode MatPublish_Base(PetscObject obj) 935d8aa7fSBarry Smith { 1035d8aa7fSBarry Smith PetscFunctionBegin; 1135d8aa7fSBarry Smith PetscFunctionReturn(0); 1235d8aa7fSBarry Smith } 1335d8aa7fSBarry Smith 1435d8aa7fSBarry Smith 154a2ae208SSatish Balay #undef __FUNCT__ 164a2ae208SSatish Balay #define __FUNCT__ "MatCreate" 17325ab940SBarry Smith /*@C 1869dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 197e5f4302SBarry Smith from either a call to MatSetType() or from the options database 207e5f4302SBarry Smith with a call to MatSetFromOptions(). The default matrix type is 217e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() or MatCreateMPIAIJ() 227e5f4302SBarry Smith if you do not set a type in the options database. If you never 237e5f4302SBarry Smith call MatSetType() or MatSetFromOptions() it will generate an 24f8ab6608SSatish Balay error when you try to use the matrix. 2583e1b59cSLois Curfman McInnes 26cb13003dSBarry Smith Collective on MPI_Comm 27cb13003dSBarry Smith 28*f69a0ea3SMatthew Knepley Input Parameter: 29*f69a0ea3SMatthew Knepley . comm - MPI communicator 307807a1faSBarry Smith 317807a1faSBarry Smith Output Parameter: 32dc401e71SLois Curfman McInnes . A - the matrix 33e0b365e2SLois Curfman McInnes 34273d9f13SBarry Smith Options Database Keys: 35273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 36273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 37273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 38273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 39273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 40273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 41273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 42273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 43273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 44e0b365e2SLois Curfman McInnes 4583e1b59cSLois Curfman McInnes Even More Options Database Keys: 4683e1b59cSLois Curfman McInnes See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 4783e1b59cSLois Curfman McInnes for additional format-specific options. 48e0b365e2SLois Curfman McInnes 49bd9ce289SLois Curfman McInnes Notes: 50ec6e0d80SSatish Balay 51273d9f13SBarry Smith Level: beginner 52273d9f13SBarry Smith 53a2fc510eSBarry Smith User manual sections: 54a2fc510eSBarry Smith + sec_matcreate 55a2fc510eSBarry Smith - chapter_matrices 56a2fc510eSBarry Smith 57273d9f13SBarry Smith .keywords: matrix, create 58273d9f13SBarry Smith 59273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 60273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 61273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 62273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 63273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 64273d9f13SBarry Smith MatConvert() 65273d9f13SBarry Smith @*/ 66*f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatCreate(MPI_Comm comm,Mat *A) 67273d9f13SBarry Smith { 68273d9f13SBarry Smith Mat B; 69dfbe8321SBarry Smith PetscErrorCode ierr; 70273d9f13SBarry Smith 71273d9f13SBarry Smith PetscFunctionBegin; 72*f69a0ea3SMatthew Knepley PetscValidPointer(A,2); 7397f1f81fSBarry Smith 748ba1e511SMatthew Knepley *A = PETSC_NULL; 758ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 768ba1e511SMatthew Knepley ierr = MatInitializePackage(PETSC_NULL);CHKERRQ(ierr); 778ba1e511SMatthew Knepley #endif 788ba1e511SMatthew Knepley 7952e6d16bSBarry Smith ierr = PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,0,"Mat",comm,MatDestroy,MatView);CHKERRQ(ierr); 80*f69a0ea3SMatthew Knepley B->m = -1; 81*f69a0ea3SMatthew Knepley B->M = -1; 82*f69a0ea3SMatthew Knepley B->n = -1; 83*f69a0ea3SMatthew Knepley B->N = -1; 84521d7252SBarry Smith B->bs = 1; 85273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 8635d8aa7fSBarry Smith B->bops->publish = MatPublish_Base; 87273d9f13SBarry Smith *A = B; 88273d9f13SBarry Smith PetscFunctionReturn(0); 89273d9f13SBarry Smith } 90273d9f13SBarry Smith 914a2ae208SSatish Balay #undef __FUNCT__ 92*f69a0ea3SMatthew Knepley #define __FUNCT__ "MatSetSizes" 93*f69a0ea3SMatthew Knepley /*@ 94*f69a0ea3SMatthew Knepley MatSetSizes - Sets the local and global sizes, and checks to determine compatibility 95*f69a0ea3SMatthew Knepley 96*f69a0ea3SMatthew Knepley Collective on Mat 97*f69a0ea3SMatthew Knepley 98*f69a0ea3SMatthew Knepley Input Parameters: 99*f69a0ea3SMatthew Knepley + A - the matrix 100*f69a0ea3SMatthew Knepley . m - number of local rows (or PETSC_DECIDE) 101*f69a0ea3SMatthew Knepley . n - number of local columns (or PETSC_DECIDE) 102*f69a0ea3SMatthew Knepley . M - number of global rows (or PETSC_DETERMINE) 103*f69a0ea3SMatthew Knepley - N - number of global columns (or PETSC_DETERMINE) 104*f69a0ea3SMatthew Knepley 105*f69a0ea3SMatthew Knepley Notes: 106*f69a0ea3SMatthew Knepley m (n) and M (N) cannot be both PETSC_DECIDE 107*f69a0ea3SMatthew Knepley If one processor calls this with M (N) of PETSC_DECIDE then all processors must, otherwise the program will hang. 108*f69a0ea3SMatthew Knepley 109*f69a0ea3SMatthew Knepley If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the 110*f69a0ea3SMatthew Knepley user must ensure that they are chosen to be compatible with the 111*f69a0ea3SMatthew Knepley vectors. To do this, one first considers the matrix-vector product 112*f69a0ea3SMatthew Knepley 'y = A x'. The 'm' that is used in the above routine must match the 113*f69a0ea3SMatthew Knepley local size used in the vector creation routine VecCreateMPI() for 'y'. 114*f69a0ea3SMatthew Knepley Likewise, the 'n' used must match that used as the local size in 115*f69a0ea3SMatthew Knepley VecCreateMPI() for 'x'. 116*f69a0ea3SMatthew Knepley 117*f69a0ea3SMatthew Knepley Level: beginner 118*f69a0ea3SMatthew Knepley 119*f69a0ea3SMatthew Knepley .seealso: MatGetSize(), PetscSplitOwnership() 120*f69a0ea3SMatthew Knepley @*/ 121*f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) 122*f69a0ea3SMatthew Knepley { 123*f69a0ea3SMatthew Knepley PetscFunctionBegin; 124*f69a0ea3SMatthew Knepley PetscValidHeaderSpecific(A,MAT_COOKIE,1); 125*f69a0ea3SMatthew Knepley if (M > 0 && m > M) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local column size %D cannot be larger than global column size %D",m,M); 126*f69a0ea3SMatthew Knepley if (N > 0 && n > N) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local row size %D cannot be larger than global row size %D",n,N); 127*f69a0ea3SMatthew Knepley if ((A->m >= 0 || A->M >= 0) && (A->m != m || A->M != M)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset row sizes to %D local %D global after previously setting them to %D local %D global",m,M,A->m,A->M); 128*f69a0ea3SMatthew Knepley if ((A->n >= 0 || A->N >= 0) && (A->n != n || A->N != N)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset column sizes to %D local %D global after previously setting them to %D local %D global",n,N,A->n,A->N); 129*f69a0ea3SMatthew Knepley A->m = m; 130*f69a0ea3SMatthew Knepley A->n = n; 131*f69a0ea3SMatthew Knepley A->M = M; 132*f69a0ea3SMatthew Knepley A->N = N; 133*f69a0ea3SMatthew Knepley PetscFunctionReturn(0); 134*f69a0ea3SMatthew Knepley } 135*f69a0ea3SMatthew Knepley 136*f69a0ea3SMatthew Knepley #undef __FUNCT__ 1374a2ae208SSatish Balay #define __FUNCT__ "MatSetFromOptions" 138273d9f13SBarry Smith /*@C 139273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 140273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 141273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 1427e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() and MatCreateMPIAIJ() if 1437e5f4302SBarry Smith you do not select a type in the options database. 144273d9f13SBarry Smith 145273d9f13SBarry Smith Collective on Mat 146273d9f13SBarry Smith 147273d9f13SBarry Smith Input Parameter: 148273d9f13SBarry Smith . A - the matrix 149273d9f13SBarry Smith 150273d9f13SBarry Smith Options Database Keys: 151273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 152273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 153273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 154273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 155273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 156273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 157273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 158273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 159273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 160273d9f13SBarry Smith 161273d9f13SBarry Smith Even More Options Database Keys: 162273d9f13SBarry Smith See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 163273d9f13SBarry Smith for additional format-specific options. 164bd9ce289SLois Curfman McInnes 1651d69843bSLois Curfman McInnes Level: beginner 1661d69843bSLois Curfman McInnes 167dc401e71SLois Curfman McInnes .keywords: matrix, create 168e0b365e2SLois Curfman McInnes 169fafbff53SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 170fafbff53SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 17139ddd567SLois Curfman McInnes MatCreateSeqDense(), MatCreateMPIDense(), 172a209d233SLois Curfman McInnes MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 173a209d233SLois Curfman McInnes MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 174273d9f13SBarry Smith MatConvert() 1757807a1faSBarry Smith @*/ 176be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetFromOptions(Mat B) 1777807a1faSBarry Smith { 178dfbe8321SBarry Smith PetscErrorCode ierr; 179273d9f13SBarry Smith char mtype[256]; 180273d9f13SBarry Smith PetscTruth flg; 181dbb450caSBarry Smith 1823a40ed3dSBarry Smith PetscFunctionBegin; 183b0a32e0cSBarry Smith ierr = PetscOptionsGetString(B->prefix,"-mat_type",mtype,256,&flg);CHKERRQ(ierr); 184273d9f13SBarry Smith if (flg) { 185273d9f13SBarry Smith ierr = MatSetType(B,mtype);CHKERRQ(ierr); 186273d9f13SBarry Smith } 187273d9f13SBarry Smith if (!B->type_name) { 18830735b05SKris Buschelman ierr = MatSetType(B,MATAIJ);CHKERRQ(ierr); 189dfa27b74SSatish Balay } 1903a40ed3dSBarry Smith PetscFunctionReturn(0); 1917807a1faSBarry Smith } 1927807a1faSBarry Smith 1934a2ae208SSatish Balay #undef __FUNCT__ 1944a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation" 195273d9f13SBarry Smith /*@C 196273d9f13SBarry Smith MatSetUpPreallocation 197dae03382SLois Curfman McInnes 198273d9f13SBarry Smith Collective on Mat 199dae03382SLois Curfman McInnes 200273d9f13SBarry Smith Input Parameter: 201273d9f13SBarry Smith . A - the matrix 202d5d45c9bSBarry Smith 203273d9f13SBarry Smith Level: beginner 204d5d45c9bSBarry Smith 205273d9f13SBarry Smith .keywords: matrix, create 206273d9f13SBarry Smith 207273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 208273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 209273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 210273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 211273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 212273d9f13SBarry Smith MatConvert() 213273d9f13SBarry Smith @*/ 214be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetUpPreallocation(Mat B) 215273d9f13SBarry Smith { 216dfbe8321SBarry Smith PetscErrorCode ierr; 217273d9f13SBarry Smith 218273d9f13SBarry Smith PetscFunctionBegin; 219273d9f13SBarry Smith if (B->ops->setuppreallocation) { 22063ba0a88SBarry Smith ierr = PetscLogInfo((B,"MatSetUpPreallocation: Warning not preallocating matrix storage\n"));CHKERRQ(ierr); 221273d9f13SBarry Smith ierr = (*B->ops->setuppreallocation)(B);CHKERRQ(ierr); 222273d9f13SBarry Smith B->ops->setuppreallocation = 0; 223273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 224273d9f13SBarry Smith } 225273d9f13SBarry Smith PetscFunctionReturn(0); 226273d9f13SBarry Smith } 227273d9f13SBarry Smith 228273d9f13SBarry Smith /* 229273d9f13SBarry Smith Copies from Cs header to A 230273d9f13SBarry Smith */ 2314a2ae208SSatish Balay #undef __FUNCT__ 2324a2ae208SSatish Balay #define __FUNCT__ "MatHeaderCopy" 233dfbe8321SBarry Smith PetscErrorCode MatHeaderCopy(Mat A,Mat C) 234273d9f13SBarry Smith { 235dfbe8321SBarry Smith PetscErrorCode ierr; 236d44834fbSBarry Smith PetscInt refct; 237273d9f13SBarry Smith PetscOps *Abops; 238273d9f13SBarry Smith MatOps Aops; 239273d9f13SBarry Smith char *mtype,*mname; 24030735b05SKris Buschelman void *spptr; 241273d9f13SBarry Smith 242273d9f13SBarry Smith PetscFunctionBegin; 243273d9f13SBarry Smith /* free all the interior data structures from mat */ 244273d9f13SBarry Smith ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 245273d9f13SBarry Smith 2468a124369SBarry Smith ierr = PetscMapDestroy(A->rmap);CHKERRQ(ierr); 2478a124369SBarry Smith ierr = PetscMapDestroy(A->cmap);CHKERRQ(ierr); 248273d9f13SBarry Smith 249273d9f13SBarry Smith /* save the parts of A we need */ 250273d9f13SBarry Smith Abops = A->bops; 251273d9f13SBarry Smith Aops = A->ops; 252273d9f13SBarry Smith refct = A->refct; 253273d9f13SBarry Smith mtype = A->type_name; 254273d9f13SBarry Smith mname = A->name; 25530735b05SKris Buschelman spptr = A->spptr; 25630735b05SKris Buschelman 25730735b05SKris Buschelman if (C->spptr) { 25830735b05SKris Buschelman ierr = PetscFree(C->spptr);CHKERRQ(ierr); 25930735b05SKris Buschelman C->spptr = PETSC_NULL; 26030735b05SKris Buschelman } 261273d9f13SBarry Smith 262273d9f13SBarry Smith /* copy C over to A */ 263273d9f13SBarry Smith ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 264273d9f13SBarry Smith 265273d9f13SBarry Smith /* return the parts of A we saved */ 266273d9f13SBarry Smith A->bops = Abops; 267273d9f13SBarry Smith A->ops = Aops; 268273d9f13SBarry Smith A->qlist = 0; 269273d9f13SBarry Smith A->refct = refct; 270273d9f13SBarry Smith A->type_name = mtype; 271273d9f13SBarry Smith A->name = mname; 27230735b05SKris Buschelman A->spptr = spptr; 273273d9f13SBarry Smith 274d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(C);CHKERRQ(ierr); 275273d9f13SBarry Smith PetscFunctionReturn(0); 276273d9f13SBarry Smith } 2778ab5b326SKris Buschelman /* 2788ab5b326SKris Buschelman Replace A's header with that of C 2798ab5b326SKris Buschelman This is essentially code moved from MatDestroy 2808ab5b326SKris Buschelman */ 2818ab5b326SKris Buschelman #undef __FUNCT__ 2828ab5b326SKris Buschelman #define __FUNCT__ "MatHeaderReplace" 2838ab5b326SKris Buschelman PetscErrorCode MatHeaderReplace(Mat A,Mat C) 2848ab5b326SKris Buschelman { 2858ab5b326SKris Buschelman PetscErrorCode ierr; 2868ab5b326SKris Buschelman 2878ab5b326SKris Buschelman PetscFunctionBegin; 2888ab5b326SKris Buschelman /* free all the interior data structures from mat */ 2898ab5b326SKris Buschelman ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 290d2c95936SBarry Smith ierr = PetscHeaderDestroy_Private((PetscObject)A);CHKERRQ(ierr); 291cb8bee85SHong Zhang ierr = PetscMapDestroy(A->rmap);CHKERRQ(ierr); 292cb8bee85SHong Zhang ierr = PetscMapDestroy(A->cmap);CHKERRQ(ierr); 2938ab5b326SKris Buschelman 2948ab5b326SKris Buschelman /* copy C over to A */ 2958ab5b326SKris Buschelman if (C) { 2968ab5b326SKris Buschelman ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 2978ab5b326SKris Buschelman ierr = PetscLogObjectDestroy((PetscObject)C);CHKERRQ(ierr); 2988ab5b326SKris Buschelman ierr = PetscFree(C);CHKERRQ(ierr); 2998ab5b326SKris Buschelman } 3008ab5b326SKris Buschelman PetscFunctionReturn(0); 3018ab5b326SKris Buschelman } 302