1be1d678aSKris Buschelman #define PETSCMAT_DLL 22d5177cdSBarry Smith 3b9147fbbSdalcinl #include "include/private/matimpl.h" 45bd3b8fbSHong Zhang 53eda8832SBarry Smith /* 60ae3cd3bSBarry Smith The input to the stash is ALWAYS in MatScalar precision, and the 70ae3cd3bSBarry Smith internal storage and output is also in MatScalar. 83eda8832SBarry Smith */ 9bc5ccf88SSatish Balay #define DEFAULT_STASH_SIZE 10000 104c1ff481SSatish Balay 119417f4adSLois Curfman McInnes /* 128798bf22SSatish Balay MatStashCreate_Private - Creates a stash,currently used for all the parallel 134c1ff481SSatish Balay matrix implementations. The stash is where elements of a matrix destined 144c1ff481SSatish Balay to be stored on other processors are kept until matrix assembly is done. 159417f4adSLois Curfman McInnes 164c1ff481SSatish Balay This is a simple minded stash. Simply adds entries to end of stash. 174c1ff481SSatish Balay 184c1ff481SSatish Balay Input Parameters: 194c1ff481SSatish Balay comm - communicator, required for scatters. 204c1ff481SSatish Balay bs - stash block size. used when stashing blocks of values 214c1ff481SSatish Balay 224c1ff481SSatish Balay Output Parameters: 234c1ff481SSatish Balay stash - the newly created stash 249417f4adSLois Curfman McInnes */ 254a2ae208SSatish Balay #undef __FUNCT__ 264a2ae208SSatish Balay #define __FUNCT__ "MatStashCreate_Private" 27c1ac3661SBarry Smith PetscErrorCode MatStashCreate_Private(MPI_Comm comm,PetscInt bs,MatStash *stash) 289417f4adSLois Curfman McInnes { 29dfbe8321SBarry Smith PetscErrorCode ierr; 30c1ac3661SBarry Smith PetscInt max,*opt,nopt; 31f1af5d2fSBarry Smith PetscTruth flg; 32bc5ccf88SSatish Balay 333a40ed3dSBarry Smith PetscFunctionBegin; 34bc5ccf88SSatish Balay /* Require 2 tags,get the second using PetscCommGetNewTag() */ 35752ec6e0SSatish Balay stash->comm = comm; 36752ec6e0SSatish Balay ierr = PetscCommGetNewTag(stash->comm,&stash->tag1);CHKERRQ(ierr); 37a2d1c673SSatish Balay ierr = PetscCommGetNewTag(stash->comm,&stash->tag2);CHKERRQ(ierr); 38a2d1c673SSatish Balay ierr = MPI_Comm_size(stash->comm,&stash->size);CHKERRQ(ierr); 39a2d1c673SSatish Balay ierr = MPI_Comm_rank(stash->comm,&stash->rank);CHKERRQ(ierr); 40bc5ccf88SSatish Balay 41434d7ff9SSatish Balay nopt = stash->size; 42d7d82daaSBarry Smith ierr = PetscMalloc(nopt*sizeof(PetscInt),&opt);CHKERRQ(ierr); 43b0a32e0cSBarry Smith ierr = PetscOptionsGetIntArray(PETSC_NULL,"-matstash_initial_size",opt,&nopt,&flg);CHKERRQ(ierr); 44434d7ff9SSatish Balay if (flg) { 45434d7ff9SSatish Balay if (nopt == 1) max = opt[0]; 46434d7ff9SSatish Balay else if (nopt == stash->size) max = opt[stash->rank]; 47434d7ff9SSatish Balay else if (stash->rank < nopt) max = opt[stash->rank]; 48f4ab19daSSatish Balay else max = 0; /* Use default */ 49434d7ff9SSatish Balay stash->umax = max; 50434d7ff9SSatish Balay } else { 51434d7ff9SSatish Balay stash->umax = 0; 52434d7ff9SSatish Balay } 53606d414cSSatish Balay ierr = PetscFree(opt);CHKERRQ(ierr); 544c1ff481SSatish Balay if (bs <= 0) bs = 1; 55a2d1c673SSatish Balay 564c1ff481SSatish Balay stash->bs = bs; 579417f4adSLois Curfman McInnes stash->nmax = 0; 58434d7ff9SSatish Balay stash->oldnmax = 0; 599417f4adSLois Curfman McInnes stash->n = 0; 604c1ff481SSatish Balay stash->reallocs = -1; 6175cae7c1SHong Zhang stash->space_head = 0; 6275cae7c1SHong Zhang stash->space = 0; 639417f4adSLois Curfman McInnes 64bc5ccf88SSatish Balay stash->send_waits = 0; 65bc5ccf88SSatish Balay stash->recv_waits = 0; 66a2d1c673SSatish Balay stash->send_status = 0; 67bc5ccf88SSatish Balay stash->nsends = 0; 68bc5ccf88SSatish Balay stash->nrecvs = 0; 69bc5ccf88SSatish Balay stash->svalues = 0; 70bc5ccf88SSatish Balay stash->rvalues = 0; 71563fb871SSatish Balay stash->rindices = 0; 72a2d1c673SSatish Balay stash->nprocs = 0; 73a2d1c673SSatish Balay stash->nprocessed = 0; 743a40ed3dSBarry Smith PetscFunctionReturn(0); 759417f4adSLois Curfman McInnes } 769417f4adSLois Curfman McInnes 774c1ff481SSatish Balay /* 788798bf22SSatish Balay MatStashDestroy_Private - Destroy the stash 794c1ff481SSatish Balay */ 804a2ae208SSatish Balay #undef __FUNCT__ 814a2ae208SSatish Balay #define __FUNCT__ "MatStashDestroy_Private" 82dfbe8321SBarry Smith PetscErrorCode MatStashDestroy_Private(MatStash *stash) 839417f4adSLois Curfman McInnes { 84dfbe8321SBarry Smith PetscErrorCode ierr; 85a2d1c673SSatish Balay 86bc5ccf88SSatish Balay PetscFunctionBegin; 8775cae7c1SHong Zhang if (stash->space_head){ 8875cae7c1SHong Zhang ierr = PetscMatStashSpaceDestroy(stash->space_head);CHKERRQ(ierr); 8975cae7c1SHong Zhang stash->space_head = 0; 9082740460SHong Zhang stash->space = 0; 9175cae7c1SHong Zhang } 92bc5ccf88SSatish Balay PetscFunctionReturn(0); 93bc5ccf88SSatish Balay } 94bc5ccf88SSatish Balay 954c1ff481SSatish Balay /* 968798bf22SSatish Balay MatStashScatterEnd_Private - This is called as the fial stage of 974c1ff481SSatish Balay scatter. The final stages of messagepassing is done here, and 984c1ff481SSatish Balay all the memory used for messagepassing is cleanedu up. This 994c1ff481SSatish Balay routine also resets the stash, and deallocates the memory used 1004c1ff481SSatish Balay for the stash. It also keeps track of the current memory usage 1014c1ff481SSatish Balay so that the same value can be used the next time through. 1024c1ff481SSatish Balay */ 1034a2ae208SSatish Balay #undef __FUNCT__ 1044a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterEnd_Private" 105dfbe8321SBarry Smith PetscErrorCode MatStashScatterEnd_Private(MatStash *stash) 106bc5ccf88SSatish Balay { 1076849ba73SBarry Smith PetscErrorCode ierr; 1085bd3b8fbSHong Zhang PetscInt nsends=stash->nsends,bs2,oldnmax; 109a2d1c673SSatish Balay MPI_Status *send_status; 110a2d1c673SSatish Balay 1113a40ed3dSBarry Smith PetscFunctionBegin; 112a2d1c673SSatish Balay /* wait on sends */ 113a2d1c673SSatish Balay if (nsends) { 11482502324SSatish Balay ierr = PetscMalloc(2*nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 115a2d1c673SSatish Balay ierr = MPI_Waitall(2*nsends,stash->send_waits,send_status);CHKERRQ(ierr); 116606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 117a2d1c673SSatish Balay } 118a2d1c673SSatish Balay 119c0c58ca7SSatish Balay /* Now update nmaxold to be app 10% more than max n used, this way the 120434d7ff9SSatish Balay wastage of space is reduced the next time this stash is used. 121434d7ff9SSatish Balay Also update the oldmax, only if it increases */ 122b9b97703SBarry Smith if (stash->n) { 12394b769a5SSatish Balay bs2 = stash->bs*stash->bs; 1248a9378f0SSatish Balay oldnmax = ((int)(stash->n * 1.1) + 5)*bs2; 125434d7ff9SSatish Balay if (oldnmax > stash->oldnmax) stash->oldnmax = oldnmax; 126b9b97703SBarry Smith } 127434d7ff9SSatish Balay 128d07ff455SSatish Balay stash->nmax = 0; 129d07ff455SSatish Balay stash->n = 0; 1304c1ff481SSatish Balay stash->reallocs = -1; 131a2d1c673SSatish Balay stash->nprocessed = 0; 13275cae7c1SHong Zhang if (stash->space_head){ 13375cae7c1SHong Zhang ierr = PetscMatStashSpaceDestroy(stash->space_head);CHKERRQ(ierr); 13475cae7c1SHong Zhang stash->space_head = 0; 13582740460SHong Zhang stash->space = 0; 13675cae7c1SHong Zhang } 137606d414cSSatish Balay ierr = PetscFree(stash->send_waits);CHKERRQ(ierr); 138606d414cSSatish Balay stash->send_waits = 0; 139606d414cSSatish Balay ierr = PetscFree(stash->recv_waits);CHKERRQ(ierr); 140606d414cSSatish Balay stash->recv_waits = 0; 141606d414cSSatish Balay ierr = PetscFree(stash->svalues);CHKERRQ(ierr); 142606d414cSSatish Balay stash->svalues = 0; 143606d414cSSatish Balay ierr = PetscFree(stash->rvalues);CHKERRQ(ierr); 144606d414cSSatish Balay stash->rvalues = 0; 145563fb871SSatish Balay ierr = PetscFree(stash->rindices);CHKERRQ(ierr); 146563fb871SSatish Balay stash->rindices = 0; 147b22afee1SSatish Balay ierr = PetscFree(stash->nprocs);CHKERRQ(ierr); 148606d414cSSatish Balay stash->nprocs = 0; 1493a40ed3dSBarry Smith PetscFunctionReturn(0); 1509417f4adSLois Curfman McInnes } 1519417f4adSLois Curfman McInnes 1524c1ff481SSatish Balay /* 1538798bf22SSatish Balay MatStashGetInfo_Private - Gets the relavant statistics of the stash 1544c1ff481SSatish Balay 1554c1ff481SSatish Balay Input Parameters: 1564c1ff481SSatish Balay stash - the stash 15794b769a5SSatish Balay nstash - the size of the stash. Indicates the number of values stored. 1584c1ff481SSatish Balay reallocs - the number of additional mallocs incurred. 1594c1ff481SSatish Balay 1604c1ff481SSatish Balay */ 1614a2ae208SSatish Balay #undef __FUNCT__ 1624a2ae208SSatish Balay #define __FUNCT__ "MatStashGetInfo_Private" 163c1ac3661SBarry Smith PetscErrorCode MatStashGetInfo_Private(MatStash *stash,PetscInt *nstash,PetscInt *reallocs) 16497530c3fSBarry Smith { 165c1ac3661SBarry Smith PetscInt bs2 = stash->bs*stash->bs; 16694b769a5SSatish Balay 1673a40ed3dSBarry Smith PetscFunctionBegin; 1681ecfd215SBarry Smith if (nstash) *nstash = stash->n*bs2; 1691ecfd215SBarry Smith if (reallocs) { 170434d7ff9SSatish Balay if (stash->reallocs < 0) *reallocs = 0; 171434d7ff9SSatish Balay else *reallocs = stash->reallocs; 1721ecfd215SBarry Smith } 173bc5ccf88SSatish Balay PetscFunctionReturn(0); 174bc5ccf88SSatish Balay } 1754c1ff481SSatish Balay 1764c1ff481SSatish Balay /* 1778798bf22SSatish Balay MatStashSetInitialSize_Private - Sets the initial size of the stash 1784c1ff481SSatish Balay 1794c1ff481SSatish Balay Input Parameters: 1804c1ff481SSatish Balay stash - the stash 1814c1ff481SSatish Balay max - the value that is used as the max size of the stash. 1824c1ff481SSatish Balay this value is used while allocating memory. 1834c1ff481SSatish Balay */ 1844a2ae208SSatish Balay #undef __FUNCT__ 1854a2ae208SSatish Balay #define __FUNCT__ "MatStashSetInitialSize_Private" 186c1ac3661SBarry Smith PetscErrorCode MatStashSetInitialSize_Private(MatStash *stash,PetscInt max) 187bc5ccf88SSatish Balay { 188bc5ccf88SSatish Balay PetscFunctionBegin; 189434d7ff9SSatish Balay stash->umax = max; 1903a40ed3dSBarry Smith PetscFunctionReturn(0); 19197530c3fSBarry Smith } 19297530c3fSBarry Smith 1938798bf22SSatish Balay /* MatStashExpand_Private - Expand the stash. This function is called 1944c1ff481SSatish Balay when the space in the stash is not sufficient to add the new values 1954c1ff481SSatish Balay being inserted into the stash. 1964c1ff481SSatish Balay 1974c1ff481SSatish Balay Input Parameters: 1984c1ff481SSatish Balay stash - the stash 1994c1ff481SSatish Balay incr - the minimum increase requested 2004c1ff481SSatish Balay 2014c1ff481SSatish Balay Notes: 2024c1ff481SSatish Balay This routine doubles the currently used memory. 2034c1ff481SSatish Balay */ 2044a2ae208SSatish Balay #undef __FUNCT__ 2054a2ae208SSatish Balay #define __FUNCT__ "MatStashExpand_Private" 206c1ac3661SBarry Smith static PetscErrorCode MatStashExpand_Private(MatStash *stash,PetscInt incr) 2079417f4adSLois Curfman McInnes { 2086849ba73SBarry Smith PetscErrorCode ierr; 2095bd3b8fbSHong Zhang PetscInt newnmax,bs2= stash->bs*stash->bs; 2109417f4adSLois Curfman McInnes 2113a40ed3dSBarry Smith PetscFunctionBegin; 2129417f4adSLois Curfman McInnes /* allocate a larger stash */ 213c481ceb5SSatish Balay if (!stash->oldnmax && !stash->nmax) { /* new stash */ 214434d7ff9SSatish Balay if (stash->umax) newnmax = stash->umax/bs2; 215434d7ff9SSatish Balay else newnmax = DEFAULT_STASH_SIZE/bs2; 216c481ceb5SSatish Balay } else if (!stash->nmax) { /* resuing stash */ 217434d7ff9SSatish Balay if (stash->umax > stash->oldnmax) newnmax = stash->umax/bs2; 218434d7ff9SSatish Balay else newnmax = stash->oldnmax/bs2; 219434d7ff9SSatish Balay } else newnmax = stash->nmax*2; 2204c1ff481SSatish Balay if (newnmax < (stash->nmax + incr)) newnmax += 2*incr; 221d07ff455SSatish Balay 22275cae7c1SHong Zhang /* Get a MatStashSpace and attach it to stash */ 22375cae7c1SHong Zhang ierr = PetscMatStashSpaceGet(bs2,newnmax,&stash->space);CHKERRQ(ierr); 224b087b6d6SSatish Balay if (!stash->space_head) { /* new stash or resuing stash->oldnmax */ 225b087b6d6SSatish Balay stash->space_head = stash->space; 22675cae7c1SHong Zhang } 227b087b6d6SSatish Balay 228bc5ccf88SSatish Balay stash->reallocs++; 22975cae7c1SHong Zhang stash->nmax = newnmax; 230bc5ccf88SSatish Balay PetscFunctionReturn(0); 231bc5ccf88SSatish Balay } 232bc5ccf88SSatish Balay /* 2338798bf22SSatish Balay MatStashValuesRow_Private - inserts values into the stash. This function 2344c1ff481SSatish Balay expects the values to be roworiented. Multiple columns belong to the same row 2354c1ff481SSatish Balay can be inserted with a single call to this function. 2364c1ff481SSatish Balay 2374c1ff481SSatish Balay Input Parameters: 2384c1ff481SSatish Balay stash - the stash 2394c1ff481SSatish Balay row - the global row correspoiding to the values 2404c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 2414c1ff481SSatish Balay idxn - the global column indices corresponding to each of the values. 2424c1ff481SSatish Balay values - the values inserted 243bc5ccf88SSatish Balay */ 2444a2ae208SSatish Balay #undef __FUNCT__ 2454a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesRow_Private" 246*54f21887SBarry Smith PetscErrorCode MatStashValuesRow_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[]) 247bc5ccf88SSatish Balay { 248dfbe8321SBarry Smith PetscErrorCode ierr; 24975cae7c1SHong Zhang PetscInt i,k; 25075cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 251bc5ccf88SSatish Balay 252bc5ccf88SSatish Balay PetscFunctionBegin; 2534c1ff481SSatish Balay /* Check and see if we have sufficient memory */ 25475cae7c1SHong Zhang if (!space || space->local_remaining < n){ 2558798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 2569417f4adSLois Curfman McInnes } 25775cae7c1SHong Zhang space = stash->space; 25875cae7c1SHong Zhang k = space->local_used; 2594c1ff481SSatish Balay for (i=0; i<n; i++) { 26075cae7c1SHong Zhang space->idx[k] = row; 26175cae7c1SHong Zhang space->idy[k] = idxn[i]; 26275cae7c1SHong Zhang space->val[k] = values[i]; 26375cae7c1SHong Zhang k++; 2649417f4adSLois Curfman McInnes } 2655bd3b8fbSHong Zhang stash->n += n; 26675cae7c1SHong Zhang space->local_used += n; 26775cae7c1SHong Zhang space->local_remaining -= n; 268a2d1c673SSatish Balay PetscFunctionReturn(0); 269a2d1c673SSatish Balay } 27075cae7c1SHong Zhang 2714c1ff481SSatish Balay /* 2728798bf22SSatish Balay MatStashValuesCol_Private - inserts values into the stash. This function 2734c1ff481SSatish Balay expects the values to be columnoriented. Multiple columns belong to the same row 2744c1ff481SSatish Balay can be inserted with a single call to this function. 275a2d1c673SSatish Balay 2764c1ff481SSatish Balay Input Parameters: 2774c1ff481SSatish Balay stash - the stash 2784c1ff481SSatish Balay row - the global row correspoiding to the values 2794c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 2804c1ff481SSatish Balay idxn - the global column indices corresponding to each of the values. 2814c1ff481SSatish Balay values - the values inserted 2824c1ff481SSatish Balay stepval - the consecutive values are sepated by a distance of stepval. 2834c1ff481SSatish Balay this happens because the input is columnoriented. 2844c1ff481SSatish Balay */ 2854a2ae208SSatish Balay #undef __FUNCT__ 2864a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesCol_Private" 287*54f21887SBarry Smith PetscErrorCode MatStashValuesCol_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt stepval) 288a2d1c673SSatish Balay { 289dfbe8321SBarry Smith PetscErrorCode ierr; 29075cae7c1SHong Zhang PetscInt i,k; 29175cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 292a2d1c673SSatish Balay 2934c1ff481SSatish Balay PetscFunctionBegin; 2944c1ff481SSatish Balay /* Check and see if we have sufficient memory */ 29575cae7c1SHong Zhang if (!space || space->local_remaining < n){ 2968798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 2974c1ff481SSatish Balay } 29875cae7c1SHong Zhang space = stash->space; 29975cae7c1SHong Zhang k = space->local_used; 3004c1ff481SSatish Balay for (i=0; i<n; i++) { 30175cae7c1SHong Zhang space->idx[k] = row; 30275cae7c1SHong Zhang space->idy[k] = idxn[i]; 30375cae7c1SHong Zhang space->val[k] = values[i*stepval]; 30475cae7c1SHong Zhang k++; 3054c1ff481SSatish Balay } 3065bd3b8fbSHong Zhang stash->n += n; 30775cae7c1SHong Zhang space->local_used += n; 30875cae7c1SHong Zhang space->local_remaining -= n; 3094c1ff481SSatish Balay PetscFunctionReturn(0); 3104c1ff481SSatish Balay } 3114c1ff481SSatish Balay 3124c1ff481SSatish Balay /* 3138798bf22SSatish Balay MatStashValuesRowBlocked_Private - inserts blocks of values into the stash. 3144c1ff481SSatish Balay This function expects the values to be roworiented. Multiple columns belong 3154c1ff481SSatish Balay to the same block-row can be inserted with a single call to this function. 3164c1ff481SSatish Balay This function extracts the sub-block of values based on the dimensions of 3174c1ff481SSatish Balay the original input block, and the row,col values corresponding to the blocks. 3184c1ff481SSatish Balay 3194c1ff481SSatish Balay Input Parameters: 3204c1ff481SSatish Balay stash - the stash 3214c1ff481SSatish Balay row - the global block-row correspoiding to the values 3224c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 3234c1ff481SSatish Balay idxn - the global block-column indices corresponding to each of the blocks of 3244c1ff481SSatish Balay values. Each block is of size bs*bs. 3254c1ff481SSatish Balay values - the values inserted 3264c1ff481SSatish Balay rmax - the number of block-rows in the original block. 3274c1ff481SSatish Balay cmax - the number of block-columsn on the original block. 3284c1ff481SSatish Balay idx - the index of the current block-row in the original block. 3294c1ff481SSatish Balay */ 3304a2ae208SSatish Balay #undef __FUNCT__ 3314a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesRowBlocked_Private" 332*54f21887SBarry Smith PetscErrorCode MatStashValuesRowBlocked_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt rmax,PetscInt cmax,PetscInt idx) 3334c1ff481SSatish Balay { 334dfbe8321SBarry Smith PetscErrorCode ierr; 33575cae7c1SHong Zhang PetscInt i,j,k,bs2,bs=stash->bs,l; 336*54f21887SBarry Smith const PetscScalar *vals; 337*54f21887SBarry Smith PetscScalar *array; 33875cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 339a2d1c673SSatish Balay 340a2d1c673SSatish Balay PetscFunctionBegin; 34175cae7c1SHong Zhang if (!space || space->local_remaining < n){ 3428798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 343a2d1c673SSatish Balay } 34475cae7c1SHong Zhang space = stash->space; 34575cae7c1SHong Zhang l = space->local_used; 34675cae7c1SHong Zhang bs2 = bs*bs; 3474c1ff481SSatish Balay for (i=0; i<n; i++) { 34875cae7c1SHong Zhang space->idx[l] = row; 34975cae7c1SHong Zhang space->idy[l] = idxn[i]; 35075cae7c1SHong Zhang /* Now copy over the block of values. Store the values column oriented. 35175cae7c1SHong Zhang This enables inserting multiple blocks belonging to a row with a single 35275cae7c1SHong Zhang funtion call */ 35375cae7c1SHong Zhang array = space->val + bs2*l; 35475cae7c1SHong Zhang vals = values + idx*bs2*n + bs*i; 35575cae7c1SHong Zhang for (j=0; j<bs; j++) { 35675cae7c1SHong Zhang for (k=0; k<bs; k++) array[k*bs] = vals[k]; 35775cae7c1SHong Zhang array++; 35875cae7c1SHong Zhang vals += cmax*bs; 35975cae7c1SHong Zhang } 36075cae7c1SHong Zhang l++; 361a2d1c673SSatish Balay } 3625bd3b8fbSHong Zhang stash->n += n; 36375cae7c1SHong Zhang space->local_used += n; 36475cae7c1SHong Zhang space->local_remaining -= n; 3654c1ff481SSatish Balay PetscFunctionReturn(0); 3664c1ff481SSatish Balay } 3674c1ff481SSatish Balay 3684c1ff481SSatish Balay /* 3698798bf22SSatish Balay MatStashValuesColBlocked_Private - inserts blocks of values into the stash. 3704c1ff481SSatish Balay This function expects the values to be roworiented. Multiple columns belong 3714c1ff481SSatish Balay to the same block-row can be inserted with a single call to this function. 3724c1ff481SSatish Balay This function extracts the sub-block of values based on the dimensions of 3734c1ff481SSatish Balay the original input block, and the row,col values corresponding to the blocks. 3744c1ff481SSatish Balay 3754c1ff481SSatish Balay Input Parameters: 3764c1ff481SSatish Balay stash - the stash 3774c1ff481SSatish Balay row - the global block-row correspoiding to the values 3784c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 3794c1ff481SSatish Balay idxn - the global block-column indices corresponding to each of the blocks of 3804c1ff481SSatish Balay values. Each block is of size bs*bs. 3814c1ff481SSatish Balay values - the values inserted 3824c1ff481SSatish Balay rmax - the number of block-rows in the original block. 3834c1ff481SSatish Balay cmax - the number of block-columsn on the original block. 3844c1ff481SSatish Balay idx - the index of the current block-row in the original block. 3854c1ff481SSatish Balay */ 3864a2ae208SSatish Balay #undef __FUNCT__ 3874a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesColBlocked_Private" 388*54f21887SBarry Smith PetscErrorCode MatStashValuesColBlocked_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt rmax,PetscInt cmax,PetscInt idx) 3894c1ff481SSatish Balay { 390dfbe8321SBarry Smith PetscErrorCode ierr; 39175cae7c1SHong Zhang PetscInt i,j,k,bs2,bs=stash->bs,l; 392*54f21887SBarry Smith const PetscScalar *vals; 393*54f21887SBarry Smith PetscScalar *array; 39475cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 3954c1ff481SSatish Balay 3964c1ff481SSatish Balay PetscFunctionBegin; 39775cae7c1SHong Zhang if (!space || space->local_remaining < n){ 3988798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 3994c1ff481SSatish Balay } 40075cae7c1SHong Zhang space = stash->space; 40175cae7c1SHong Zhang l = space->local_used; 40275cae7c1SHong Zhang bs2 = bs*bs; 4034c1ff481SSatish Balay for (i=0; i<n; i++) { 40475cae7c1SHong Zhang space->idx[l] = row; 40575cae7c1SHong Zhang space->idy[l] = idxn[i]; 40675cae7c1SHong Zhang /* Now copy over the block of values. Store the values column oriented. 40775cae7c1SHong Zhang This enables inserting multiple blocks belonging to a row with a single 40875cae7c1SHong Zhang funtion call */ 40975cae7c1SHong Zhang array = space->val + bs2*l; 41075cae7c1SHong Zhang vals = values + idx*bs2*n + bs*i; 41175cae7c1SHong Zhang for (j=0; j<bs; j++) { 41275cae7c1SHong Zhang for (k=0; k<bs; k++) {array[k] = vals[k];} 41375cae7c1SHong Zhang array += bs; 41475cae7c1SHong Zhang vals += rmax*bs; 41575cae7c1SHong Zhang } 4165bd3b8fbSHong Zhang l++; 417a2d1c673SSatish Balay } 4185bd3b8fbSHong Zhang stash->n += n; 41975cae7c1SHong Zhang space->local_used += n; 42075cae7c1SHong Zhang space->local_remaining -= n; 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4229417f4adSLois Curfman McInnes } 4234c1ff481SSatish Balay /* 4248798bf22SSatish Balay MatStashScatterBegin_Private - Initiates the transfer of values to the 4254c1ff481SSatish Balay correct owners. This function goes through the stash, and check the 4264c1ff481SSatish Balay owners of each stashed value, and sends the values off to the owner 4274c1ff481SSatish Balay processors. 428bc5ccf88SSatish Balay 4294c1ff481SSatish Balay Input Parameters: 4304c1ff481SSatish Balay stash - the stash 4314c1ff481SSatish Balay owners - an array of size 'no-of-procs' which gives the ownership range 4324c1ff481SSatish Balay for each node. 4334c1ff481SSatish Balay 4344c1ff481SSatish Balay Notes: The 'owners' array in the cased of the blocked-stash has the 4354c1ff481SSatish Balay ranges specified blocked global indices, and for the regular stash in 4364c1ff481SSatish Balay the proper global indices. 4374c1ff481SSatish Balay */ 4384a2ae208SSatish Balay #undef __FUNCT__ 4394a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterBegin_Private" 4401e2582c4SBarry Smith PetscErrorCode MatStashScatterBegin_Private(Mat mat,MatStash *stash,PetscInt *owners) 441bc5ccf88SSatish Balay { 442c1ac3661SBarry Smith PetscInt *owner,*startv,*starti,tag1=stash->tag1,tag2=stash->tag2,bs2; 443fe09c992SBarry Smith PetscInt size=stash->size,nsends; 4446849ba73SBarry Smith PetscErrorCode ierr; 44575cae7c1SHong Zhang PetscInt count,*sindices,**rindices,i,j,idx,lastidx,l; 446*54f21887SBarry Smith PetscScalar **rvalues,*svalues; 447bc5ccf88SSatish Balay MPI_Comm comm = stash->comm; 448563fb871SSatish Balay MPI_Request *send_waits,*recv_waits,*recv_waits1,*recv_waits2; 449fe09c992SBarry Smith PetscMPIInt *nprocs,*nlengths,nreceives; 4505bd3b8fbSHong Zhang PetscInt *sp_idx,*sp_idy; 451*54f21887SBarry Smith PetscScalar *sp_val; 4525bd3b8fbSHong Zhang PetscMatStashSpace space,space_next; 453bc5ccf88SSatish Balay 454bc5ccf88SSatish Balay PetscFunctionBegin; 4554c1ff481SSatish Balay bs2 = stash->bs*stash->bs; 45675cae7c1SHong Zhang 457bc5ccf88SSatish Balay /* first count number of contributors to each processor */ 458fe09c992SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&nprocs);CHKERRQ(ierr); 459fe09c992SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscMPIInt));CHKERRQ(ierr); 460c1ac3661SBarry Smith ierr = PetscMalloc((stash->n+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); 461a2d1c673SSatish Balay 462563fb871SSatish Balay nlengths = nprocs+size; 46375cae7c1SHong Zhang i = j = 0; 4647357eb19SBarry Smith lastidx = -1; 4655bd3b8fbSHong Zhang space = stash->space_head; 46675cae7c1SHong Zhang while (space != PETSC_NULL){ 46775cae7c1SHong Zhang space_next = space->next; 4685bd3b8fbSHong Zhang sp_idx = space->idx; 46975cae7c1SHong Zhang for (l=0; l<space->local_used; l++){ 4707357eb19SBarry Smith /* if indices are NOT locally sorted, need to start search at the beginning */ 4715bd3b8fbSHong Zhang if (lastidx > (idx = sp_idx[l])) j = 0; 4727357eb19SBarry Smith lastidx = idx; 4737357eb19SBarry Smith for (; j<size; j++) { 4744c1ff481SSatish Balay if (idx >= owners[j] && idx < owners[j+1]) { 475563fb871SSatish Balay nlengths[j]++; owner[i] = j; break; 476bc5ccf88SSatish Balay } 477bc5ccf88SSatish Balay } 47875cae7c1SHong Zhang i++; 47975cae7c1SHong Zhang } 48075cae7c1SHong Zhang space = space_next; 481bc5ccf88SSatish Balay } 482563fb871SSatish Balay /* Now check what procs get messages - and compute nsends. */ 483563fb871SSatish Balay for (i=0, nsends=0 ; i<size; i++) { 484563fb871SSatish Balay if (nlengths[i]) { nprocs[i] = 1; nsends ++;} 485563fb871SSatish Balay } 486bc5ccf88SSatish Balay 487*54f21887SBarry Smith {PetscMPIInt *onodes,*olengths; 488563fb871SSatish Balay /* Determine the number of messages to expect, their lengths, from from-ids */ 489563fb871SSatish Balay ierr = PetscGatherNumberOfMessages(comm,nprocs,nlengths,&nreceives);CHKERRQ(ierr); 490563fb871SSatish Balay ierr = PetscGatherMessageLengths(comm,nsends,nreceives,nlengths,&onodes,&olengths);CHKERRQ(ierr); 491563fb871SSatish Balay /* since clubbing row,col - lengths are multiplied by 2 */ 492563fb871SSatish Balay for (i=0; i<nreceives; i++) olengths[i] *=2; 493563fb871SSatish Balay ierr = PetscPostIrecvInt(comm,tag1,nreceives,onodes,olengths,&rindices,&recv_waits1);CHKERRQ(ierr); 494563fb871SSatish Balay /* values are size 'bs2' lengths (and remove earlier factor 2 */ 495563fb871SSatish Balay for (i=0; i<nreceives; i++) olengths[i] = olengths[i]*bs2/2; 496563fb871SSatish Balay ierr = PetscPostIrecvScalar(comm,tag2,nreceives,onodes,olengths,&rvalues,&recv_waits2);CHKERRQ(ierr); 497563fb871SSatish Balay ierr = PetscFree(onodes);CHKERRQ(ierr); 498563fb871SSatish Balay ierr = PetscFree(olengths);CHKERRQ(ierr); 499bc5ccf88SSatish Balay } 500bc5ccf88SSatish Balay 501bc5ccf88SSatish Balay /* do sends: 502bc5ccf88SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 503bc5ccf88SSatish Balay the ith processor 504bc5ccf88SSatish Balay */ 505c1ac3661SBarry Smith ierr = PetscMalloc((stash->n+1)*(bs2*sizeof(MatScalar)+2*sizeof(PetscInt)),&svalues);CHKERRQ(ierr); 506c1ac3661SBarry Smith sindices = (PetscInt*)(svalues + bs2*stash->n); 507b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 508c1ac3661SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&startv);CHKERRQ(ierr); 509bc5ccf88SSatish Balay starti = startv + size; 510a2d1c673SSatish Balay /* use 2 sends the first with all_a, the next with all_i and all_j */ 511bc5ccf88SSatish Balay startv[0] = 0; starti[0] = 0; 512bc5ccf88SSatish Balay for (i=1; i<size; i++) { 513563fb871SSatish Balay startv[i] = startv[i-1] + nlengths[i-1]; 514563fb871SSatish Balay starti[i] = starti[i-1] + nlengths[i-1]*2; 515bc5ccf88SSatish Balay } 51675cae7c1SHong Zhang 51775cae7c1SHong Zhang i = 0; 5185bd3b8fbSHong Zhang space = stash->space_head; 51975cae7c1SHong Zhang while (space != PETSC_NULL){ 52075cae7c1SHong Zhang space_next = space->next; 5215bd3b8fbSHong Zhang sp_idx = space->idx; 5225bd3b8fbSHong Zhang sp_idy = space->idy; 5235bd3b8fbSHong Zhang sp_val = space->val; 52475cae7c1SHong Zhang for (l=0; l<space->local_used; l++){ 525bc5ccf88SSatish Balay j = owner[i]; 526a2d1c673SSatish Balay if (bs2 == 1) { 5275bd3b8fbSHong Zhang svalues[startv[j]] = sp_val[l]; 528a2d1c673SSatish Balay } else { 529c1ac3661SBarry Smith PetscInt k; 530*54f21887SBarry Smith PetscScalar *buf1,*buf2; 5314c1ff481SSatish Balay buf1 = svalues+bs2*startv[j]; 532b087b6d6SSatish Balay buf2 = space->val + bs2*l; 5334c1ff481SSatish Balay for (k=0; k<bs2; k++){ buf1[k] = buf2[k]; } 534a2d1c673SSatish Balay } 5355bd3b8fbSHong Zhang sindices[starti[j]] = sp_idx[l]; 5365bd3b8fbSHong Zhang sindices[starti[j]+nlengths[j]] = sp_idy[l]; 537bc5ccf88SSatish Balay startv[j]++; 538bc5ccf88SSatish Balay starti[j]++; 53975cae7c1SHong Zhang i++; 54075cae7c1SHong Zhang } 54175cae7c1SHong Zhang space = space_next; 542bc5ccf88SSatish Balay } 543bc5ccf88SSatish Balay startv[0] = 0; 544563fb871SSatish Balay for (i=1; i<size; i++) { startv[i] = startv[i-1] + nlengths[i-1];} 545e5d0e772SSatish Balay 546bc5ccf88SSatish Balay for (i=0,count=0; i<size; i++) { 547563fb871SSatish Balay if (nprocs[i]) { 548563fb871SSatish Balay ierr = MPI_Isend(sindices+2*startv[i],2*nlengths[i],MPIU_INT,i,tag1,comm,send_waits+count++);CHKERRQ(ierr); 549563fb871SSatish Balay ierr = MPI_Isend(svalues+bs2*startv[i],bs2*nlengths[i],MPIU_MATSCALAR,i,tag2,comm,send_waits+count++);CHKERRQ(ierr); 550bc5ccf88SSatish Balay } 551b85c94c3SSatish Balay } 5526cf91177SBarry Smith #if defined(PETSC_USE_INFO) 5531e2582c4SBarry Smith ierr = PetscInfo1(mat,"No of messages: %d \n",nsends);CHKERRQ(ierr); 554e5d0e772SSatish Balay for (i=0; i<size; i++) { 555e5d0e772SSatish Balay if (nprocs[i]) { 5561e2582c4SBarry Smith ierr = PetscInfo2(mat,"Mesg_to: %d: size: %d \n",i,nlengths[i]*bs2*sizeof(MatScalar)+2*sizeof(PetscInt));CHKERRQ(ierr); 557e5d0e772SSatish Balay } 558e5d0e772SSatish Balay } 559e5d0e772SSatish Balay #endif 560606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 561606d414cSSatish Balay ierr = PetscFree(startv);CHKERRQ(ierr); 562a2d1c673SSatish Balay /* This memory is reused in scatter end for a different purpose*/ 563a2d1c673SSatish Balay for (i=0; i<2*size; i++) nprocs[i] = -1; 564a2d1c673SSatish Balay stash->nprocs = nprocs; 565a2d1c673SSatish Balay 566563fb871SSatish Balay /* recv_waits need to be contiguous for MatStashScatterGetMesg_Private() */ 567563fb871SSatish Balay ierr = PetscMalloc((nreceives+1)*2*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 568563fb871SSatish Balay 569563fb871SSatish Balay for (i=0; i<nreceives; i++) { 570563fb871SSatish Balay recv_waits[2*i] = recv_waits1[i]; 571563fb871SSatish Balay recv_waits[2*i+1] = recv_waits2[i]; 572563fb871SSatish Balay } 573563fb871SSatish Balay stash->recv_waits = recv_waits; 574563fb871SSatish Balay ierr = PetscFree(recv_waits1);CHKERRQ(ierr); 575563fb871SSatish Balay ierr = PetscFree(recv_waits2);CHKERRQ(ierr); 576563fb871SSatish Balay 577bc5ccf88SSatish Balay stash->svalues = svalues; stash->rvalues = rvalues; 578563fb871SSatish Balay stash->rindices = rindices; stash->send_waits = send_waits; 579bc5ccf88SSatish Balay stash->nsends = nsends; stash->nrecvs = nreceives; 580bc5ccf88SSatish Balay PetscFunctionReturn(0); 581bc5ccf88SSatish Balay } 582bc5ccf88SSatish Balay 583a2d1c673SSatish Balay /* 5848798bf22SSatish Balay MatStashScatterGetMesg_Private - This function waits on the receives posted 5858798bf22SSatish Balay in the function MatStashScatterBegin_Private() and returns one message at 5864c1ff481SSatish Balay a time to the calling function. If no messages are left, it indicates this 5874c1ff481SSatish Balay by setting flg = 0, else it sets flg = 1. 5884c1ff481SSatish Balay 5894c1ff481SSatish Balay Input Parameters: 5904c1ff481SSatish Balay stash - the stash 5914c1ff481SSatish Balay 5924c1ff481SSatish Balay Output Parameters: 5934c1ff481SSatish Balay nvals - the number of entries in the current message. 5944c1ff481SSatish Balay rows - an array of row indices (or blocked indices) corresponding to the values 5954c1ff481SSatish Balay cols - an array of columnindices (or blocked indices) corresponding to the values 5964c1ff481SSatish Balay vals - the values 5974c1ff481SSatish Balay flg - 0 indicates no more message left, and the current call has no values associated. 5984c1ff481SSatish Balay 1 indicates that the current call successfully received a message, and the 5994c1ff481SSatish Balay other output parameters nvals,rows,cols,vals are set appropriately. 600a2d1c673SSatish Balay */ 6014a2ae208SSatish Balay #undef __FUNCT__ 6024a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterGetMesg_Private" 603*54f21887SBarry Smith PetscErrorCode MatStashScatterGetMesg_Private(MatStash *stash,PetscMPIInt *nvals,PetscInt **rows,PetscInt** cols,PetscScalar **vals,PetscInt *flg) 604bc5ccf88SSatish Balay { 6056849ba73SBarry Smith PetscErrorCode ierr; 606fe09c992SBarry Smith PetscMPIInt i,*flg_v,i1,i2; 607fe09c992SBarry Smith PetscInt bs2; 608a2d1c673SSatish Balay MPI_Status recv_status; 609b0a32e0cSBarry Smith PetscTruth match_found = PETSC_FALSE; 610bc5ccf88SSatish Balay 611bc5ccf88SSatish Balay PetscFunctionBegin; 612bc5ccf88SSatish Balay 613a2d1c673SSatish Balay *flg = 0; /* When a message is discovered this is reset to 1 */ 614a2d1c673SSatish Balay /* Return if no more messages to process */ 615a2d1c673SSatish Balay if (stash->nprocessed == stash->nrecvs) { PetscFunctionReturn(0); } 616a2d1c673SSatish Balay 617a2d1c673SSatish Balay flg_v = stash->nprocs; 6184c1ff481SSatish Balay bs2 = stash->bs*stash->bs; 619a2d1c673SSatish Balay /* If a matching pair of receieves are found, process them, and return the data to 620a2d1c673SSatish Balay the calling function. Until then keep receiving messages */ 621a2d1c673SSatish Balay while (!match_found) { 622a2d1c673SSatish Balay ierr = MPI_Waitany(2*stash->nrecvs,stash->recv_waits,&i,&recv_status);CHKERRQ(ierr); 623a2d1c673SSatish Balay /* Now pack the received message into a structure which is useable by others */ 624a2d1c673SSatish Balay if (i % 2) { 6253eda8832SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_MATSCALAR,nvals);CHKERRQ(ierr); 626c1dc657dSBarry Smith flg_v[2*recv_status.MPI_SOURCE] = i/2; 627a2d1c673SSatish Balay *nvals = *nvals/bs2; 628563fb871SSatish Balay } else { 629563fb871SSatish Balay ierr = MPI_Get_count(&recv_status,MPIU_INT,nvals);CHKERRQ(ierr); 630563fb871SSatish Balay flg_v[2*recv_status.MPI_SOURCE+1] = i/2; 631563fb871SSatish Balay *nvals = *nvals/2; /* This message has both row indices and col indices */ 632bc5ccf88SSatish Balay } 633a2d1c673SSatish Balay 634a2d1c673SSatish Balay /* Check if we have both the messages from this proc */ 635c1dc657dSBarry Smith i1 = flg_v[2*recv_status.MPI_SOURCE]; 636c1dc657dSBarry Smith i2 = flg_v[2*recv_status.MPI_SOURCE+1]; 637a2d1c673SSatish Balay if (i1 != -1 && i2 != -1) { 638563fb871SSatish Balay *rows = stash->rindices[i2]; 639a2d1c673SSatish Balay *cols = *rows + *nvals; 640563fb871SSatish Balay *vals = stash->rvalues[i1]; 641a2d1c673SSatish Balay *flg = 1; 642a2d1c673SSatish Balay stash->nprocessed ++; 64335d8aa7fSBarry Smith match_found = PETSC_TRUE; 644bc5ccf88SSatish Balay } 645bc5ccf88SSatish Balay } 646bc5ccf88SSatish Balay PetscFunctionReturn(0); 647bc5ccf88SSatish Balay } 648