1be1d678aSKris Buschelman #define PETSCMAT_DLL 22d5177cdSBarry Smith 3b9147fbbSdalcinl #include "include/private/matimpl.h" 45bd3b8fbSHong Zhang 5bc5ccf88SSatish Balay #define DEFAULT_STASH_SIZE 10000 64c1ff481SSatish Balay 79417f4adSLois Curfman McInnes /* 88798bf22SSatish Balay MatStashCreate_Private - Creates a stash,currently used for all the parallel 94c1ff481SSatish Balay matrix implementations. The stash is where elements of a matrix destined 104c1ff481SSatish Balay to be stored on other processors are kept until matrix assembly is done. 119417f4adSLois Curfman McInnes 124c1ff481SSatish Balay This is a simple minded stash. Simply adds entries to end of stash. 134c1ff481SSatish Balay 144c1ff481SSatish Balay Input Parameters: 154c1ff481SSatish Balay comm - communicator, required for scatters. 164c1ff481SSatish Balay bs - stash block size. used when stashing blocks of values 174c1ff481SSatish Balay 184c1ff481SSatish Balay Output Parameters: 194c1ff481SSatish Balay stash - the newly created stash 209417f4adSLois Curfman McInnes */ 214a2ae208SSatish Balay #undef __FUNCT__ 224a2ae208SSatish Balay #define __FUNCT__ "MatStashCreate_Private" 23c1ac3661SBarry Smith PetscErrorCode MatStashCreate_Private(MPI_Comm comm,PetscInt bs,MatStash *stash) 249417f4adSLois Curfman McInnes { 25dfbe8321SBarry Smith PetscErrorCode ierr; 26c1ac3661SBarry Smith PetscInt max,*opt,nopt; 27f1af5d2fSBarry Smith PetscTruth flg; 28bc5ccf88SSatish Balay 293a40ed3dSBarry Smith PetscFunctionBegin; 30bc5ccf88SSatish Balay /* Require 2 tags,get the second using PetscCommGetNewTag() */ 31752ec6e0SSatish Balay stash->comm = comm; 32752ec6e0SSatish Balay ierr = PetscCommGetNewTag(stash->comm,&stash->tag1);CHKERRQ(ierr); 33a2d1c673SSatish Balay ierr = PetscCommGetNewTag(stash->comm,&stash->tag2);CHKERRQ(ierr); 34a2d1c673SSatish Balay ierr = MPI_Comm_size(stash->comm,&stash->size);CHKERRQ(ierr); 35a2d1c673SSatish Balay ierr = MPI_Comm_rank(stash->comm,&stash->rank);CHKERRQ(ierr); 36bc5ccf88SSatish Balay 37434d7ff9SSatish Balay nopt = stash->size; 38d7d82daaSBarry Smith ierr = PetscMalloc(nopt*sizeof(PetscInt),&opt);CHKERRQ(ierr); 39b0a32e0cSBarry Smith ierr = PetscOptionsGetIntArray(PETSC_NULL,"-matstash_initial_size",opt,&nopt,&flg);CHKERRQ(ierr); 40434d7ff9SSatish Balay if (flg) { 41434d7ff9SSatish Balay if (nopt == 1) max = opt[0]; 42434d7ff9SSatish Balay else if (nopt == stash->size) max = opt[stash->rank]; 43434d7ff9SSatish Balay else if (stash->rank < nopt) max = opt[stash->rank]; 44f4ab19daSSatish Balay else max = 0; /* Use default */ 45434d7ff9SSatish Balay stash->umax = max; 46434d7ff9SSatish Balay } else { 47434d7ff9SSatish Balay stash->umax = 0; 48434d7ff9SSatish Balay } 49606d414cSSatish Balay ierr = PetscFree(opt);CHKERRQ(ierr); 504c1ff481SSatish Balay if (bs <= 0) bs = 1; 51a2d1c673SSatish Balay 524c1ff481SSatish Balay stash->bs = bs; 539417f4adSLois Curfman McInnes stash->nmax = 0; 54434d7ff9SSatish Balay stash->oldnmax = 0; 559417f4adSLois Curfman McInnes stash->n = 0; 564c1ff481SSatish Balay stash->reallocs = -1; 5775cae7c1SHong Zhang stash->space_head = 0; 5875cae7c1SHong Zhang stash->space = 0; 599417f4adSLois Curfman McInnes 60bc5ccf88SSatish Balay stash->send_waits = 0; 61bc5ccf88SSatish Balay stash->recv_waits = 0; 62a2d1c673SSatish Balay stash->send_status = 0; 63bc5ccf88SSatish Balay stash->nsends = 0; 64bc5ccf88SSatish Balay stash->nrecvs = 0; 65bc5ccf88SSatish Balay stash->svalues = 0; 66bc5ccf88SSatish Balay stash->rvalues = 0; 67563fb871SSatish Balay stash->rindices = 0; 68a2d1c673SSatish Balay stash->nprocs = 0; 69a2d1c673SSatish Balay stash->nprocessed = 0; 703a40ed3dSBarry Smith PetscFunctionReturn(0); 719417f4adSLois Curfman McInnes } 729417f4adSLois Curfman McInnes 734c1ff481SSatish Balay /* 748798bf22SSatish Balay MatStashDestroy_Private - Destroy the stash 754c1ff481SSatish Balay */ 764a2ae208SSatish Balay #undef __FUNCT__ 774a2ae208SSatish Balay #define __FUNCT__ "MatStashDestroy_Private" 78dfbe8321SBarry Smith PetscErrorCode MatStashDestroy_Private(MatStash *stash) 799417f4adSLois Curfman McInnes { 80dfbe8321SBarry Smith PetscErrorCode ierr; 81a2d1c673SSatish Balay 82bc5ccf88SSatish Balay PetscFunctionBegin; 8375cae7c1SHong Zhang if (stash->space_head){ 8475cae7c1SHong Zhang ierr = PetscMatStashSpaceDestroy(stash->space_head);CHKERRQ(ierr); 8575cae7c1SHong Zhang stash->space_head = 0; 8682740460SHong Zhang stash->space = 0; 8775cae7c1SHong Zhang } 88bc5ccf88SSatish Balay PetscFunctionReturn(0); 89bc5ccf88SSatish Balay } 90bc5ccf88SSatish Balay 914c1ff481SSatish Balay /* 928798bf22SSatish Balay MatStashScatterEnd_Private - This is called as the fial stage of 934c1ff481SSatish Balay scatter. The final stages of messagepassing is done here, and 944c1ff481SSatish Balay all the memory used for messagepassing is cleanedu up. This 954c1ff481SSatish Balay routine also resets the stash, and deallocates the memory used 964c1ff481SSatish Balay for the stash. It also keeps track of the current memory usage 974c1ff481SSatish Balay so that the same value can be used the next time through. 984c1ff481SSatish Balay */ 994a2ae208SSatish Balay #undef __FUNCT__ 1004a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterEnd_Private" 101dfbe8321SBarry Smith PetscErrorCode MatStashScatterEnd_Private(MatStash *stash) 102bc5ccf88SSatish Balay { 1036849ba73SBarry Smith PetscErrorCode ierr; 1045bd3b8fbSHong Zhang PetscInt nsends=stash->nsends,bs2,oldnmax; 105a2d1c673SSatish Balay MPI_Status *send_status; 106a2d1c673SSatish Balay 1073a40ed3dSBarry Smith PetscFunctionBegin; 108a2d1c673SSatish Balay /* wait on sends */ 109a2d1c673SSatish Balay if (nsends) { 11082502324SSatish Balay ierr = PetscMalloc(2*nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 111a2d1c673SSatish Balay ierr = MPI_Waitall(2*nsends,stash->send_waits,send_status);CHKERRQ(ierr); 112606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 113a2d1c673SSatish Balay } 114a2d1c673SSatish Balay 115c0c58ca7SSatish Balay /* Now update nmaxold to be app 10% more than max n used, this way the 116434d7ff9SSatish Balay wastage of space is reduced the next time this stash is used. 117434d7ff9SSatish Balay Also update the oldmax, only if it increases */ 118b9b97703SBarry Smith if (stash->n) { 11994b769a5SSatish Balay bs2 = stash->bs*stash->bs; 1208a9378f0SSatish Balay oldnmax = ((int)(stash->n * 1.1) + 5)*bs2; 121434d7ff9SSatish Balay if (oldnmax > stash->oldnmax) stash->oldnmax = oldnmax; 122b9b97703SBarry Smith } 123434d7ff9SSatish Balay 124d07ff455SSatish Balay stash->nmax = 0; 125d07ff455SSatish Balay stash->n = 0; 1264c1ff481SSatish Balay stash->reallocs = -1; 127a2d1c673SSatish Balay stash->nprocessed = 0; 12875cae7c1SHong Zhang if (stash->space_head){ 12975cae7c1SHong Zhang ierr = PetscMatStashSpaceDestroy(stash->space_head);CHKERRQ(ierr); 13075cae7c1SHong Zhang stash->space_head = 0; 13182740460SHong Zhang stash->space = 0; 13275cae7c1SHong Zhang } 133606d414cSSatish Balay ierr = PetscFree(stash->send_waits);CHKERRQ(ierr); 134606d414cSSatish Balay stash->send_waits = 0; 135606d414cSSatish Balay ierr = PetscFree(stash->recv_waits);CHKERRQ(ierr); 136606d414cSSatish Balay stash->recv_waits = 0; 137606d414cSSatish Balay ierr = PetscFree(stash->svalues);CHKERRQ(ierr); 138606d414cSSatish Balay stash->svalues = 0; 139606d414cSSatish Balay ierr = PetscFree(stash->rvalues);CHKERRQ(ierr); 140606d414cSSatish Balay stash->rvalues = 0; 141563fb871SSatish Balay ierr = PetscFree(stash->rindices);CHKERRQ(ierr); 142563fb871SSatish Balay stash->rindices = 0; 143b22afee1SSatish Balay ierr = PetscFree(stash->nprocs);CHKERRQ(ierr); 144606d414cSSatish Balay stash->nprocs = 0; 1453a40ed3dSBarry Smith PetscFunctionReturn(0); 1469417f4adSLois Curfman McInnes } 1479417f4adSLois Curfman McInnes 1484c1ff481SSatish Balay /* 1498798bf22SSatish Balay MatStashGetInfo_Private - Gets the relavant statistics of the stash 1504c1ff481SSatish Balay 1514c1ff481SSatish Balay Input Parameters: 1524c1ff481SSatish Balay stash - the stash 15394b769a5SSatish Balay nstash - the size of the stash. Indicates the number of values stored. 1544c1ff481SSatish Balay reallocs - the number of additional mallocs incurred. 1554c1ff481SSatish Balay 1564c1ff481SSatish Balay */ 1574a2ae208SSatish Balay #undef __FUNCT__ 1584a2ae208SSatish Balay #define __FUNCT__ "MatStashGetInfo_Private" 159c1ac3661SBarry Smith PetscErrorCode MatStashGetInfo_Private(MatStash *stash,PetscInt *nstash,PetscInt *reallocs) 16097530c3fSBarry Smith { 161c1ac3661SBarry Smith PetscInt bs2 = stash->bs*stash->bs; 16294b769a5SSatish Balay 1633a40ed3dSBarry Smith PetscFunctionBegin; 1641ecfd215SBarry Smith if (nstash) *nstash = stash->n*bs2; 1651ecfd215SBarry Smith if (reallocs) { 166434d7ff9SSatish Balay if (stash->reallocs < 0) *reallocs = 0; 167434d7ff9SSatish Balay else *reallocs = stash->reallocs; 1681ecfd215SBarry Smith } 169bc5ccf88SSatish Balay PetscFunctionReturn(0); 170bc5ccf88SSatish Balay } 1714c1ff481SSatish Balay 1724c1ff481SSatish Balay /* 1738798bf22SSatish Balay MatStashSetInitialSize_Private - Sets the initial size of the stash 1744c1ff481SSatish Balay 1754c1ff481SSatish Balay Input Parameters: 1764c1ff481SSatish Balay stash - the stash 1774c1ff481SSatish Balay max - the value that is used as the max size of the stash. 1784c1ff481SSatish Balay this value is used while allocating memory. 1794c1ff481SSatish Balay */ 1804a2ae208SSatish Balay #undef __FUNCT__ 1814a2ae208SSatish Balay #define __FUNCT__ "MatStashSetInitialSize_Private" 182c1ac3661SBarry Smith PetscErrorCode MatStashSetInitialSize_Private(MatStash *stash,PetscInt max) 183bc5ccf88SSatish Balay { 184bc5ccf88SSatish Balay PetscFunctionBegin; 185434d7ff9SSatish Balay stash->umax = max; 1863a40ed3dSBarry Smith PetscFunctionReturn(0); 18797530c3fSBarry Smith } 18897530c3fSBarry Smith 1898798bf22SSatish Balay /* MatStashExpand_Private - Expand the stash. This function is called 1904c1ff481SSatish Balay when the space in the stash is not sufficient to add the new values 1914c1ff481SSatish Balay being inserted into the stash. 1924c1ff481SSatish Balay 1934c1ff481SSatish Balay Input Parameters: 1944c1ff481SSatish Balay stash - the stash 1954c1ff481SSatish Balay incr - the minimum increase requested 1964c1ff481SSatish Balay 1974c1ff481SSatish Balay Notes: 1984c1ff481SSatish Balay This routine doubles the currently used memory. 1994c1ff481SSatish Balay */ 2004a2ae208SSatish Balay #undef __FUNCT__ 2014a2ae208SSatish Balay #define __FUNCT__ "MatStashExpand_Private" 202c1ac3661SBarry Smith static PetscErrorCode MatStashExpand_Private(MatStash *stash,PetscInt incr) 2039417f4adSLois Curfman McInnes { 2046849ba73SBarry Smith PetscErrorCode ierr; 2055bd3b8fbSHong Zhang PetscInt newnmax,bs2= stash->bs*stash->bs; 2069417f4adSLois Curfman McInnes 2073a40ed3dSBarry Smith PetscFunctionBegin; 2089417f4adSLois Curfman McInnes /* allocate a larger stash */ 209c481ceb5SSatish Balay if (!stash->oldnmax && !stash->nmax) { /* new stash */ 210434d7ff9SSatish Balay if (stash->umax) newnmax = stash->umax/bs2; 211434d7ff9SSatish Balay else newnmax = DEFAULT_STASH_SIZE/bs2; 212c481ceb5SSatish Balay } else if (!stash->nmax) { /* resuing stash */ 213434d7ff9SSatish Balay if (stash->umax > stash->oldnmax) newnmax = stash->umax/bs2; 214434d7ff9SSatish Balay else newnmax = stash->oldnmax/bs2; 215434d7ff9SSatish Balay } else newnmax = stash->nmax*2; 2164c1ff481SSatish Balay if (newnmax < (stash->nmax + incr)) newnmax += 2*incr; 217d07ff455SSatish Balay 21875cae7c1SHong Zhang /* Get a MatStashSpace and attach it to stash */ 21975cae7c1SHong Zhang ierr = PetscMatStashSpaceGet(bs2,newnmax,&stash->space);CHKERRQ(ierr); 220b087b6d6SSatish Balay if (!stash->space_head) { /* new stash or resuing stash->oldnmax */ 221b087b6d6SSatish Balay stash->space_head = stash->space; 22275cae7c1SHong Zhang } 223b087b6d6SSatish Balay 224bc5ccf88SSatish Balay stash->reallocs++; 22575cae7c1SHong Zhang stash->nmax = newnmax; 226bc5ccf88SSatish Balay PetscFunctionReturn(0); 227bc5ccf88SSatish Balay } 228bc5ccf88SSatish Balay /* 2298798bf22SSatish Balay MatStashValuesRow_Private - inserts values into the stash. This function 2304c1ff481SSatish Balay expects the values to be roworiented. Multiple columns belong to the same row 2314c1ff481SSatish Balay can be inserted with a single call to this function. 2324c1ff481SSatish Balay 2334c1ff481SSatish Balay Input Parameters: 2344c1ff481SSatish Balay stash - the stash 2354c1ff481SSatish Balay row - the global row correspoiding to the values 2364c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 2374c1ff481SSatish Balay idxn - the global column indices corresponding to each of the values. 2384c1ff481SSatish Balay values - the values inserted 239bc5ccf88SSatish Balay */ 2404a2ae208SSatish Balay #undef __FUNCT__ 2414a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesRow_Private" 24254f21887SBarry Smith PetscErrorCode MatStashValuesRow_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[]) 243bc5ccf88SSatish Balay { 244dfbe8321SBarry Smith PetscErrorCode ierr; 24575cae7c1SHong Zhang PetscInt i,k; 24675cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 247bc5ccf88SSatish Balay 248bc5ccf88SSatish Balay PetscFunctionBegin; 2494c1ff481SSatish Balay /* Check and see if we have sufficient memory */ 25075cae7c1SHong Zhang if (!space || space->local_remaining < n){ 2518798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 2529417f4adSLois Curfman McInnes } 25375cae7c1SHong Zhang space = stash->space; 25475cae7c1SHong Zhang k = space->local_used; 2554c1ff481SSatish Balay for (i=0; i<n; i++) { 25675cae7c1SHong Zhang space->idx[k] = row; 25775cae7c1SHong Zhang space->idy[k] = idxn[i]; 25875cae7c1SHong Zhang space->val[k] = values[i]; 25975cae7c1SHong Zhang k++; 2609417f4adSLois Curfman McInnes } 2615bd3b8fbSHong Zhang stash->n += n; 26275cae7c1SHong Zhang space->local_used += n; 26375cae7c1SHong Zhang space->local_remaining -= n; 264a2d1c673SSatish Balay PetscFunctionReturn(0); 265a2d1c673SSatish Balay } 26675cae7c1SHong Zhang 2674c1ff481SSatish Balay /* 2688798bf22SSatish Balay MatStashValuesCol_Private - inserts values into the stash. This function 2694c1ff481SSatish Balay expects the values to be columnoriented. Multiple columns belong to the same row 2704c1ff481SSatish Balay can be inserted with a single call to this function. 271a2d1c673SSatish Balay 2724c1ff481SSatish Balay Input Parameters: 2734c1ff481SSatish Balay stash - the stash 2744c1ff481SSatish Balay row - the global row correspoiding to the values 2754c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 2764c1ff481SSatish Balay idxn - the global column indices corresponding to each of the values. 2774c1ff481SSatish Balay values - the values inserted 2784c1ff481SSatish Balay stepval - the consecutive values are sepated by a distance of stepval. 2794c1ff481SSatish Balay this happens because the input is columnoriented. 2804c1ff481SSatish Balay */ 2814a2ae208SSatish Balay #undef __FUNCT__ 2824a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesCol_Private" 28354f21887SBarry Smith PetscErrorCode MatStashValuesCol_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt stepval) 284a2d1c673SSatish Balay { 285dfbe8321SBarry Smith PetscErrorCode ierr; 28675cae7c1SHong Zhang PetscInt i,k; 28775cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 288a2d1c673SSatish Balay 2894c1ff481SSatish Balay PetscFunctionBegin; 2904c1ff481SSatish Balay /* Check and see if we have sufficient memory */ 29175cae7c1SHong Zhang if (!space || space->local_remaining < n){ 2928798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 2934c1ff481SSatish Balay } 29475cae7c1SHong Zhang space = stash->space; 29575cae7c1SHong Zhang k = space->local_used; 2964c1ff481SSatish Balay for (i=0; i<n; i++) { 29775cae7c1SHong Zhang space->idx[k] = row; 29875cae7c1SHong Zhang space->idy[k] = idxn[i]; 29975cae7c1SHong Zhang space->val[k] = values[i*stepval]; 30075cae7c1SHong Zhang k++; 3014c1ff481SSatish Balay } 3025bd3b8fbSHong Zhang stash->n += n; 30375cae7c1SHong Zhang space->local_used += n; 30475cae7c1SHong Zhang space->local_remaining -= n; 3054c1ff481SSatish Balay PetscFunctionReturn(0); 3064c1ff481SSatish Balay } 3074c1ff481SSatish Balay 3084c1ff481SSatish Balay /* 3098798bf22SSatish Balay MatStashValuesRowBlocked_Private - inserts blocks of values into the stash. 3104c1ff481SSatish Balay This function expects the values to be roworiented. Multiple columns belong 3114c1ff481SSatish Balay to the same block-row can be inserted with a single call to this function. 3124c1ff481SSatish Balay This function extracts the sub-block of values based on the dimensions of 3134c1ff481SSatish Balay the original input block, and the row,col values corresponding to the blocks. 3144c1ff481SSatish Balay 3154c1ff481SSatish Balay Input Parameters: 3164c1ff481SSatish Balay stash - the stash 3174c1ff481SSatish Balay row - the global block-row correspoiding to the values 3184c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 3194c1ff481SSatish Balay idxn - the global block-column indices corresponding to each of the blocks of 3204c1ff481SSatish Balay values. Each block is of size bs*bs. 3214c1ff481SSatish Balay values - the values inserted 3224c1ff481SSatish Balay rmax - the number of block-rows in the original block. 3234c1ff481SSatish Balay cmax - the number of block-columsn on the original block. 3244c1ff481SSatish Balay idx - the index of the current block-row in the original block. 3254c1ff481SSatish Balay */ 3264a2ae208SSatish Balay #undef __FUNCT__ 3274a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesRowBlocked_Private" 32854f21887SBarry Smith PetscErrorCode MatStashValuesRowBlocked_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt rmax,PetscInt cmax,PetscInt idx) 3294c1ff481SSatish Balay { 330dfbe8321SBarry Smith PetscErrorCode ierr; 33175cae7c1SHong Zhang PetscInt i,j,k,bs2,bs=stash->bs,l; 33254f21887SBarry Smith const PetscScalar *vals; 33354f21887SBarry Smith PetscScalar *array; 33475cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 335a2d1c673SSatish Balay 336a2d1c673SSatish Balay PetscFunctionBegin; 33775cae7c1SHong Zhang if (!space || space->local_remaining < n){ 3388798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 339a2d1c673SSatish Balay } 34075cae7c1SHong Zhang space = stash->space; 34175cae7c1SHong Zhang l = space->local_used; 34275cae7c1SHong Zhang bs2 = bs*bs; 3434c1ff481SSatish Balay for (i=0; i<n; i++) { 34475cae7c1SHong Zhang space->idx[l] = row; 34575cae7c1SHong Zhang space->idy[l] = idxn[i]; 34675cae7c1SHong Zhang /* Now copy over the block of values. Store the values column oriented. 34775cae7c1SHong Zhang This enables inserting multiple blocks belonging to a row with a single 34875cae7c1SHong Zhang funtion call */ 34975cae7c1SHong Zhang array = space->val + bs2*l; 35075cae7c1SHong Zhang vals = values + idx*bs2*n + bs*i; 35175cae7c1SHong Zhang for (j=0; j<bs; j++) { 35275cae7c1SHong Zhang for (k=0; k<bs; k++) array[k*bs] = vals[k]; 35375cae7c1SHong Zhang array++; 35475cae7c1SHong Zhang vals += cmax*bs; 35575cae7c1SHong Zhang } 35675cae7c1SHong Zhang l++; 357a2d1c673SSatish Balay } 3585bd3b8fbSHong Zhang stash->n += n; 35975cae7c1SHong Zhang space->local_used += n; 36075cae7c1SHong Zhang space->local_remaining -= n; 3614c1ff481SSatish Balay PetscFunctionReturn(0); 3624c1ff481SSatish Balay } 3634c1ff481SSatish Balay 3644c1ff481SSatish Balay /* 3658798bf22SSatish Balay MatStashValuesColBlocked_Private - inserts blocks of values into the stash. 3664c1ff481SSatish Balay This function expects the values to be roworiented. Multiple columns belong 3674c1ff481SSatish Balay to the same block-row can be inserted with a single call to this function. 3684c1ff481SSatish Balay This function extracts the sub-block of values based on the dimensions of 3694c1ff481SSatish Balay the original input block, and the row,col values corresponding to the blocks. 3704c1ff481SSatish Balay 3714c1ff481SSatish Balay Input Parameters: 3724c1ff481SSatish Balay stash - the stash 3734c1ff481SSatish Balay row - the global block-row correspoiding to the values 3744c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 3754c1ff481SSatish Balay idxn - the global block-column indices corresponding to each of the blocks of 3764c1ff481SSatish Balay values. Each block is of size bs*bs. 3774c1ff481SSatish Balay values - the values inserted 3784c1ff481SSatish Balay rmax - the number of block-rows in the original block. 3794c1ff481SSatish Balay cmax - the number of block-columsn on the original block. 3804c1ff481SSatish Balay idx - the index of the current block-row in the original block. 3814c1ff481SSatish Balay */ 3824a2ae208SSatish Balay #undef __FUNCT__ 3834a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesColBlocked_Private" 38454f21887SBarry Smith PetscErrorCode MatStashValuesColBlocked_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt rmax,PetscInt cmax,PetscInt idx) 3854c1ff481SSatish Balay { 386dfbe8321SBarry Smith PetscErrorCode ierr; 38775cae7c1SHong Zhang PetscInt i,j,k,bs2,bs=stash->bs,l; 38854f21887SBarry Smith const PetscScalar *vals; 38954f21887SBarry Smith PetscScalar *array; 39075cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 3914c1ff481SSatish Balay 3924c1ff481SSatish Balay PetscFunctionBegin; 39375cae7c1SHong Zhang if (!space || space->local_remaining < n){ 3948798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 3954c1ff481SSatish Balay } 39675cae7c1SHong Zhang space = stash->space; 39775cae7c1SHong Zhang l = space->local_used; 39875cae7c1SHong Zhang bs2 = bs*bs; 3994c1ff481SSatish Balay for (i=0; i<n; i++) { 40075cae7c1SHong Zhang space->idx[l] = row; 40175cae7c1SHong Zhang space->idy[l] = idxn[i]; 40275cae7c1SHong Zhang /* Now copy over the block of values. Store the values column oriented. 40375cae7c1SHong Zhang This enables inserting multiple blocks belonging to a row with a single 40475cae7c1SHong Zhang funtion call */ 40575cae7c1SHong Zhang array = space->val + bs2*l; 40675cae7c1SHong Zhang vals = values + idx*bs2*n + bs*i; 40775cae7c1SHong Zhang for (j=0; j<bs; j++) { 40875cae7c1SHong Zhang for (k=0; k<bs; k++) {array[k] = vals[k];} 40975cae7c1SHong Zhang array += bs; 41075cae7c1SHong Zhang vals += rmax*bs; 41175cae7c1SHong Zhang } 4125bd3b8fbSHong Zhang l++; 413a2d1c673SSatish Balay } 4145bd3b8fbSHong Zhang stash->n += n; 41575cae7c1SHong Zhang space->local_used += n; 41675cae7c1SHong Zhang space->local_remaining -= n; 4173a40ed3dSBarry Smith PetscFunctionReturn(0); 4189417f4adSLois Curfman McInnes } 4194c1ff481SSatish Balay /* 4208798bf22SSatish Balay MatStashScatterBegin_Private - Initiates the transfer of values to the 4214c1ff481SSatish Balay correct owners. This function goes through the stash, and check the 4224c1ff481SSatish Balay owners of each stashed value, and sends the values off to the owner 4234c1ff481SSatish Balay processors. 424bc5ccf88SSatish Balay 4254c1ff481SSatish Balay Input Parameters: 4264c1ff481SSatish Balay stash - the stash 4274c1ff481SSatish Balay owners - an array of size 'no-of-procs' which gives the ownership range 4284c1ff481SSatish Balay for each node. 4294c1ff481SSatish Balay 4304c1ff481SSatish Balay Notes: The 'owners' array in the cased of the blocked-stash has the 4314c1ff481SSatish Balay ranges specified blocked global indices, and for the regular stash in 4324c1ff481SSatish Balay the proper global indices. 4334c1ff481SSatish Balay */ 4344a2ae208SSatish Balay #undef __FUNCT__ 4354a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterBegin_Private" 4361e2582c4SBarry Smith PetscErrorCode MatStashScatterBegin_Private(Mat mat,MatStash *stash,PetscInt *owners) 437bc5ccf88SSatish Balay { 438c1ac3661SBarry Smith PetscInt *owner,*startv,*starti,tag1=stash->tag1,tag2=stash->tag2,bs2; 439fe09c992SBarry Smith PetscInt size=stash->size,nsends; 4406849ba73SBarry Smith PetscErrorCode ierr; 44175cae7c1SHong Zhang PetscInt count,*sindices,**rindices,i,j,idx,lastidx,l; 44254f21887SBarry Smith PetscScalar **rvalues,*svalues; 443bc5ccf88SSatish Balay MPI_Comm comm = stash->comm; 444563fb871SSatish Balay MPI_Request *send_waits,*recv_waits,*recv_waits1,*recv_waits2; 445fe09c992SBarry Smith PetscMPIInt *nprocs,*nlengths,nreceives; 4465bd3b8fbSHong Zhang PetscInt *sp_idx,*sp_idy; 44754f21887SBarry Smith PetscScalar *sp_val; 4485bd3b8fbSHong Zhang PetscMatStashSpace space,space_next; 449bc5ccf88SSatish Balay 450bc5ccf88SSatish Balay PetscFunctionBegin; 4514c1ff481SSatish Balay bs2 = stash->bs*stash->bs; 45275cae7c1SHong Zhang 453bc5ccf88SSatish Balay /* first count number of contributors to each processor */ 454fe09c992SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&nprocs);CHKERRQ(ierr); 455fe09c992SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscMPIInt));CHKERRQ(ierr); 456c1ac3661SBarry Smith ierr = PetscMalloc((stash->n+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); 457a2d1c673SSatish Balay 458563fb871SSatish Balay nlengths = nprocs+size; 45975cae7c1SHong Zhang i = j = 0; 4607357eb19SBarry Smith lastidx = -1; 4615bd3b8fbSHong Zhang space = stash->space_head; 46275cae7c1SHong Zhang while (space != PETSC_NULL){ 46375cae7c1SHong Zhang space_next = space->next; 4645bd3b8fbSHong Zhang sp_idx = space->idx; 46575cae7c1SHong Zhang for (l=0; l<space->local_used; l++){ 4667357eb19SBarry Smith /* if indices are NOT locally sorted, need to start search at the beginning */ 4675bd3b8fbSHong Zhang if (lastidx > (idx = sp_idx[l])) j = 0; 4687357eb19SBarry Smith lastidx = idx; 4697357eb19SBarry Smith for (; j<size; j++) { 4704c1ff481SSatish Balay if (idx >= owners[j] && idx < owners[j+1]) { 471563fb871SSatish Balay nlengths[j]++; owner[i] = j; break; 472bc5ccf88SSatish Balay } 473bc5ccf88SSatish Balay } 47475cae7c1SHong Zhang i++; 47575cae7c1SHong Zhang } 47675cae7c1SHong Zhang space = space_next; 477bc5ccf88SSatish Balay } 478563fb871SSatish Balay /* Now check what procs get messages - and compute nsends. */ 479563fb871SSatish Balay for (i=0, nsends=0 ; i<size; i++) { 480563fb871SSatish Balay if (nlengths[i]) { nprocs[i] = 1; nsends ++;} 481563fb871SSatish Balay } 482bc5ccf88SSatish Balay 48354f21887SBarry Smith {PetscMPIInt *onodes,*olengths; 484563fb871SSatish Balay /* Determine the number of messages to expect, their lengths, from from-ids */ 485563fb871SSatish Balay ierr = PetscGatherNumberOfMessages(comm,nprocs,nlengths,&nreceives);CHKERRQ(ierr); 486563fb871SSatish Balay ierr = PetscGatherMessageLengths(comm,nsends,nreceives,nlengths,&onodes,&olengths);CHKERRQ(ierr); 487563fb871SSatish Balay /* since clubbing row,col - lengths are multiplied by 2 */ 488563fb871SSatish Balay for (i=0; i<nreceives; i++) olengths[i] *=2; 489563fb871SSatish Balay ierr = PetscPostIrecvInt(comm,tag1,nreceives,onodes,olengths,&rindices,&recv_waits1);CHKERRQ(ierr); 490563fb871SSatish Balay /* values are size 'bs2' lengths (and remove earlier factor 2 */ 491563fb871SSatish Balay for (i=0; i<nreceives; i++) olengths[i] = olengths[i]*bs2/2; 492563fb871SSatish Balay ierr = PetscPostIrecvScalar(comm,tag2,nreceives,onodes,olengths,&rvalues,&recv_waits2);CHKERRQ(ierr); 493563fb871SSatish Balay ierr = PetscFree(onodes);CHKERRQ(ierr); 494563fb871SSatish Balay ierr = PetscFree(olengths);CHKERRQ(ierr); 495bc5ccf88SSatish Balay } 496bc5ccf88SSatish Balay 497bc5ccf88SSatish Balay /* do sends: 498bc5ccf88SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 499bc5ccf88SSatish Balay the ith processor 500bc5ccf88SSatish Balay */ 501*a77337e4SBarry Smith ierr = PetscMalloc((stash->n+1)*(bs2*sizeof(PetscScalar)+2*sizeof(PetscInt)),&svalues);CHKERRQ(ierr); 502c1ac3661SBarry Smith sindices = (PetscInt*)(svalues + bs2*stash->n); 503b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 504c1ac3661SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&startv);CHKERRQ(ierr); 505bc5ccf88SSatish Balay starti = startv + size; 506a2d1c673SSatish Balay /* use 2 sends the first with all_a, the next with all_i and all_j */ 507bc5ccf88SSatish Balay startv[0] = 0; starti[0] = 0; 508bc5ccf88SSatish Balay for (i=1; i<size; i++) { 509563fb871SSatish Balay startv[i] = startv[i-1] + nlengths[i-1]; 510563fb871SSatish Balay starti[i] = starti[i-1] + nlengths[i-1]*2; 511bc5ccf88SSatish Balay } 51275cae7c1SHong Zhang 51375cae7c1SHong Zhang i = 0; 5145bd3b8fbSHong Zhang space = stash->space_head; 51575cae7c1SHong Zhang while (space != PETSC_NULL){ 51675cae7c1SHong Zhang space_next = space->next; 5175bd3b8fbSHong Zhang sp_idx = space->idx; 5185bd3b8fbSHong Zhang sp_idy = space->idy; 5195bd3b8fbSHong Zhang sp_val = space->val; 52075cae7c1SHong Zhang for (l=0; l<space->local_used; l++){ 521bc5ccf88SSatish Balay j = owner[i]; 522a2d1c673SSatish Balay if (bs2 == 1) { 5235bd3b8fbSHong Zhang svalues[startv[j]] = sp_val[l]; 524a2d1c673SSatish Balay } else { 525c1ac3661SBarry Smith PetscInt k; 52654f21887SBarry Smith PetscScalar *buf1,*buf2; 5274c1ff481SSatish Balay buf1 = svalues+bs2*startv[j]; 528b087b6d6SSatish Balay buf2 = space->val + bs2*l; 5294c1ff481SSatish Balay for (k=0; k<bs2; k++){ buf1[k] = buf2[k]; } 530a2d1c673SSatish Balay } 5315bd3b8fbSHong Zhang sindices[starti[j]] = sp_idx[l]; 5325bd3b8fbSHong Zhang sindices[starti[j]+nlengths[j]] = sp_idy[l]; 533bc5ccf88SSatish Balay startv[j]++; 534bc5ccf88SSatish Balay starti[j]++; 53575cae7c1SHong Zhang i++; 53675cae7c1SHong Zhang } 53775cae7c1SHong Zhang space = space_next; 538bc5ccf88SSatish Balay } 539bc5ccf88SSatish Balay startv[0] = 0; 540563fb871SSatish Balay for (i=1; i<size; i++) { startv[i] = startv[i-1] + nlengths[i-1];} 541e5d0e772SSatish Balay 542bc5ccf88SSatish Balay for (i=0,count=0; i<size; i++) { 543563fb871SSatish Balay if (nprocs[i]) { 544563fb871SSatish Balay ierr = MPI_Isend(sindices+2*startv[i],2*nlengths[i],MPIU_INT,i,tag1,comm,send_waits+count++);CHKERRQ(ierr); 545*a77337e4SBarry Smith ierr = MPI_Isend(svalues+bs2*startv[i],bs2*nlengths[i],MPIU_SCALAR,i,tag2,comm,send_waits+count++);CHKERRQ(ierr); 546bc5ccf88SSatish Balay } 547b85c94c3SSatish Balay } 5486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 5491e2582c4SBarry Smith ierr = PetscInfo1(mat,"No of messages: %d \n",nsends);CHKERRQ(ierr); 550e5d0e772SSatish Balay for (i=0; i<size; i++) { 551e5d0e772SSatish Balay if (nprocs[i]) { 552*a77337e4SBarry Smith ierr = PetscInfo2(mat,"Mesg_to: %d: size: %d \n",i,nlengths[i]*bs2*sizeof(PetscScalar)+2*sizeof(PetscInt));CHKERRQ(ierr); 553e5d0e772SSatish Balay } 554e5d0e772SSatish Balay } 555e5d0e772SSatish Balay #endif 556606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 557606d414cSSatish Balay ierr = PetscFree(startv);CHKERRQ(ierr); 558a2d1c673SSatish Balay /* This memory is reused in scatter end for a different purpose*/ 559a2d1c673SSatish Balay for (i=0; i<2*size; i++) nprocs[i] = -1; 560a2d1c673SSatish Balay stash->nprocs = nprocs; 561a2d1c673SSatish Balay 562563fb871SSatish Balay /* recv_waits need to be contiguous for MatStashScatterGetMesg_Private() */ 563563fb871SSatish Balay ierr = PetscMalloc((nreceives+1)*2*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 564563fb871SSatish Balay 565563fb871SSatish Balay for (i=0; i<nreceives; i++) { 566563fb871SSatish Balay recv_waits[2*i] = recv_waits1[i]; 567563fb871SSatish Balay recv_waits[2*i+1] = recv_waits2[i]; 568563fb871SSatish Balay } 569563fb871SSatish Balay stash->recv_waits = recv_waits; 570563fb871SSatish Balay ierr = PetscFree(recv_waits1);CHKERRQ(ierr); 571563fb871SSatish Balay ierr = PetscFree(recv_waits2);CHKERRQ(ierr); 572563fb871SSatish Balay 573bc5ccf88SSatish Balay stash->svalues = svalues; stash->rvalues = rvalues; 574563fb871SSatish Balay stash->rindices = rindices; stash->send_waits = send_waits; 575bc5ccf88SSatish Balay stash->nsends = nsends; stash->nrecvs = nreceives; 576bc5ccf88SSatish Balay PetscFunctionReturn(0); 577bc5ccf88SSatish Balay } 578bc5ccf88SSatish Balay 579a2d1c673SSatish Balay /* 5808798bf22SSatish Balay MatStashScatterGetMesg_Private - This function waits on the receives posted 5818798bf22SSatish Balay in the function MatStashScatterBegin_Private() and returns one message at 5824c1ff481SSatish Balay a time to the calling function. If no messages are left, it indicates this 5834c1ff481SSatish Balay by setting flg = 0, else it sets flg = 1. 5844c1ff481SSatish Balay 5854c1ff481SSatish Balay Input Parameters: 5864c1ff481SSatish Balay stash - the stash 5874c1ff481SSatish Balay 5884c1ff481SSatish Balay Output Parameters: 5894c1ff481SSatish Balay nvals - the number of entries in the current message. 5904c1ff481SSatish Balay rows - an array of row indices (or blocked indices) corresponding to the values 5914c1ff481SSatish Balay cols - an array of columnindices (or blocked indices) corresponding to the values 5924c1ff481SSatish Balay vals - the values 5934c1ff481SSatish Balay flg - 0 indicates no more message left, and the current call has no values associated. 5944c1ff481SSatish Balay 1 indicates that the current call successfully received a message, and the 5954c1ff481SSatish Balay other output parameters nvals,rows,cols,vals are set appropriately. 596a2d1c673SSatish Balay */ 5974a2ae208SSatish Balay #undef __FUNCT__ 5984a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterGetMesg_Private" 59954f21887SBarry Smith PetscErrorCode MatStashScatterGetMesg_Private(MatStash *stash,PetscMPIInt *nvals,PetscInt **rows,PetscInt** cols,PetscScalar **vals,PetscInt *flg) 600bc5ccf88SSatish Balay { 6016849ba73SBarry Smith PetscErrorCode ierr; 602fe09c992SBarry Smith PetscMPIInt i,*flg_v,i1,i2; 603fe09c992SBarry Smith PetscInt bs2; 604a2d1c673SSatish Balay MPI_Status recv_status; 605b0a32e0cSBarry Smith PetscTruth match_found = PETSC_FALSE; 606bc5ccf88SSatish Balay 607bc5ccf88SSatish Balay PetscFunctionBegin; 608bc5ccf88SSatish Balay 609a2d1c673SSatish Balay *flg = 0; /* When a message is discovered this is reset to 1 */ 610a2d1c673SSatish Balay /* Return if no more messages to process */ 611a2d1c673SSatish Balay if (stash->nprocessed == stash->nrecvs) { PetscFunctionReturn(0); } 612a2d1c673SSatish Balay 613a2d1c673SSatish Balay flg_v = stash->nprocs; 6144c1ff481SSatish Balay bs2 = stash->bs*stash->bs; 615a2d1c673SSatish Balay /* If a matching pair of receieves are found, process them, and return the data to 616a2d1c673SSatish Balay the calling function. Until then keep receiving messages */ 617a2d1c673SSatish Balay while (!match_found) { 618a2d1c673SSatish Balay ierr = MPI_Waitany(2*stash->nrecvs,stash->recv_waits,&i,&recv_status);CHKERRQ(ierr); 619a2d1c673SSatish Balay /* Now pack the received message into a structure which is useable by others */ 620a2d1c673SSatish Balay if (i % 2) { 621*a77337e4SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,nvals);CHKERRQ(ierr); 622c1dc657dSBarry Smith flg_v[2*recv_status.MPI_SOURCE] = i/2; 623a2d1c673SSatish Balay *nvals = *nvals/bs2; 624563fb871SSatish Balay } else { 625563fb871SSatish Balay ierr = MPI_Get_count(&recv_status,MPIU_INT,nvals);CHKERRQ(ierr); 626563fb871SSatish Balay flg_v[2*recv_status.MPI_SOURCE+1] = i/2; 627563fb871SSatish Balay *nvals = *nvals/2; /* This message has both row indices and col indices */ 628bc5ccf88SSatish Balay } 629a2d1c673SSatish Balay 630a2d1c673SSatish Balay /* Check if we have both the messages from this proc */ 631c1dc657dSBarry Smith i1 = flg_v[2*recv_status.MPI_SOURCE]; 632c1dc657dSBarry Smith i2 = flg_v[2*recv_status.MPI_SOURCE+1]; 633a2d1c673SSatish Balay if (i1 != -1 && i2 != -1) { 634563fb871SSatish Balay *rows = stash->rindices[i2]; 635a2d1c673SSatish Balay *cols = *rows + *nvals; 636563fb871SSatish Balay *vals = stash->rvalues[i1]; 637a2d1c673SSatish Balay *flg = 1; 638a2d1c673SSatish Balay stash->nprocessed ++; 63935d8aa7fSBarry Smith match_found = PETSC_TRUE; 640bc5ccf88SSatish Balay } 641bc5ccf88SSatish Balay } 642bc5ccf88SSatish Balay PetscFunctionReturn(0); 643bc5ccf88SSatish Balay } 644