12d5177cdSBarry Smith 2*b45d2f2cSJed Brown #include <petsc-private/matimpl.h> 35bd3b8fbSHong Zhang 4bc5ccf88SSatish Balay #define DEFAULT_STASH_SIZE 10000 54c1ff481SSatish Balay 69417f4adSLois Curfman McInnes /* 78798bf22SSatish Balay MatStashCreate_Private - Creates a stash,currently used for all the parallel 84c1ff481SSatish Balay matrix implementations. The stash is where elements of a matrix destined 94c1ff481SSatish Balay to be stored on other processors are kept until matrix assembly is done. 109417f4adSLois Curfman McInnes 114c1ff481SSatish Balay This is a simple minded stash. Simply adds entries to end of stash. 124c1ff481SSatish Balay 134c1ff481SSatish Balay Input Parameters: 144c1ff481SSatish Balay comm - communicator, required for scatters. 154c1ff481SSatish Balay bs - stash block size. used when stashing blocks of values 164c1ff481SSatish Balay 174c1ff481SSatish Balay Output Parameters: 184c1ff481SSatish Balay stash - the newly created stash 199417f4adSLois Curfman McInnes */ 204a2ae208SSatish Balay #undef __FUNCT__ 214a2ae208SSatish Balay #define __FUNCT__ "MatStashCreate_Private" 22c1ac3661SBarry Smith PetscErrorCode MatStashCreate_Private(MPI_Comm comm,PetscInt bs,MatStash *stash) 239417f4adSLois Curfman McInnes { 24dfbe8321SBarry Smith PetscErrorCode ierr; 25533163c2SBarry Smith PetscInt max,*opt,nopt,i; 26ace3abfcSBarry Smith PetscBool flg; 27bc5ccf88SSatish Balay 283a40ed3dSBarry Smith PetscFunctionBegin; 29bc5ccf88SSatish Balay /* Require 2 tags,get the second using PetscCommGetNewTag() */ 30752ec6e0SSatish Balay stash->comm = comm; 31752ec6e0SSatish Balay ierr = PetscCommGetNewTag(stash->comm,&stash->tag1);CHKERRQ(ierr); 32a2d1c673SSatish Balay ierr = PetscCommGetNewTag(stash->comm,&stash->tag2);CHKERRQ(ierr); 33a2d1c673SSatish Balay ierr = MPI_Comm_size(stash->comm,&stash->size);CHKERRQ(ierr); 34a2d1c673SSatish Balay ierr = MPI_Comm_rank(stash->comm,&stash->rank);CHKERRQ(ierr); 35533163c2SBarry Smith ierr = PetscMalloc(2*stash->size*sizeof(PetscMPIInt),&stash->flg_v);CHKERRQ(ierr); 36533163c2SBarry Smith for (i=0; i<2*stash->size; i++) stash->flg_v[i] = -1; 37533163c2SBarry Smith 38bc5ccf88SSatish Balay 39434d7ff9SSatish Balay nopt = stash->size; 40d7d82daaSBarry Smith ierr = PetscMalloc(nopt*sizeof(PetscInt),&opt);CHKERRQ(ierr); 41b0a32e0cSBarry Smith ierr = PetscOptionsGetIntArray(PETSC_NULL,"-matstash_initial_size",opt,&nopt,&flg);CHKERRQ(ierr); 42434d7ff9SSatish Balay if (flg) { 43434d7ff9SSatish Balay if (nopt == 1) max = opt[0]; 44434d7ff9SSatish Balay else if (nopt == stash->size) max = opt[stash->rank]; 45434d7ff9SSatish Balay else if (stash->rank < nopt) max = opt[stash->rank]; 46f4ab19daSSatish Balay else max = 0; /* Use default */ 47434d7ff9SSatish Balay stash->umax = max; 48434d7ff9SSatish Balay } else { 49434d7ff9SSatish Balay stash->umax = 0; 50434d7ff9SSatish Balay } 51606d414cSSatish Balay ierr = PetscFree(opt);CHKERRQ(ierr); 524c1ff481SSatish Balay if (bs <= 0) bs = 1; 53a2d1c673SSatish Balay 544c1ff481SSatish Balay stash->bs = bs; 559417f4adSLois Curfman McInnes stash->nmax = 0; 56434d7ff9SSatish Balay stash->oldnmax = 0; 579417f4adSLois Curfman McInnes stash->n = 0; 584c1ff481SSatish Balay stash->reallocs = -1; 5975cae7c1SHong Zhang stash->space_head = 0; 6075cae7c1SHong Zhang stash->space = 0; 619417f4adSLois Curfman McInnes 62bc5ccf88SSatish Balay stash->send_waits = 0; 63bc5ccf88SSatish Balay stash->recv_waits = 0; 64a2d1c673SSatish Balay stash->send_status = 0; 65bc5ccf88SSatish Balay stash->nsends = 0; 66bc5ccf88SSatish Balay stash->nrecvs = 0; 67bc5ccf88SSatish Balay stash->svalues = 0; 68bc5ccf88SSatish Balay stash->rvalues = 0; 69563fb871SSatish Balay stash->rindices = 0; 70a2d1c673SSatish Balay stash->nprocessed = 0; 7167318a8aSJed Brown 7267318a8aSJed Brown stash->reproduce = PETSC_FALSE; 73acfcf0e5SJed Brown ierr = PetscOptionsGetBool(PETSC_NULL,"-matstash_reproduce",&stash->reproduce,PETSC_NULL);CHKERRQ(ierr); 743a40ed3dSBarry Smith PetscFunctionReturn(0); 759417f4adSLois Curfman McInnes } 769417f4adSLois Curfman McInnes 774c1ff481SSatish Balay /* 788798bf22SSatish Balay MatStashDestroy_Private - Destroy the stash 794c1ff481SSatish Balay */ 804a2ae208SSatish Balay #undef __FUNCT__ 814a2ae208SSatish Balay #define __FUNCT__ "MatStashDestroy_Private" 82dfbe8321SBarry Smith PetscErrorCode MatStashDestroy_Private(MatStash *stash) 839417f4adSLois Curfman McInnes { 84dfbe8321SBarry Smith PetscErrorCode ierr; 85a2d1c673SSatish Balay 86bc5ccf88SSatish Balay PetscFunctionBegin; 876bf464f9SBarry Smith ierr = PetscMatStashSpaceDestroy(&stash->space_head);CHKERRQ(ierr); 8882740460SHong Zhang stash->space = 0; 89533163c2SBarry Smith ierr = PetscFree(stash->flg_v);CHKERRQ(ierr); 90bc5ccf88SSatish Balay PetscFunctionReturn(0); 91bc5ccf88SSatish Balay } 92bc5ccf88SSatish Balay 934c1ff481SSatish Balay /* 9467318a8aSJed Brown MatStashScatterEnd_Private - This is called as the final stage of 954c1ff481SSatish Balay scatter. The final stages of message passing is done here, and 9667318a8aSJed Brown all the memory used for message passing is cleaned up. This 974c1ff481SSatish Balay routine also resets the stash, and deallocates the memory used 984c1ff481SSatish Balay for the stash. It also keeps track of the current memory usage 994c1ff481SSatish Balay so that the same value can be used the next time through. 1004c1ff481SSatish Balay */ 1014a2ae208SSatish Balay #undef __FUNCT__ 1024a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterEnd_Private" 103dfbe8321SBarry Smith PetscErrorCode MatStashScatterEnd_Private(MatStash *stash) 104bc5ccf88SSatish Balay { 1056849ba73SBarry Smith PetscErrorCode ierr; 106533163c2SBarry Smith PetscInt nsends=stash->nsends,bs2,oldnmax,i; 107a2d1c673SSatish Balay MPI_Status *send_status; 108a2d1c673SSatish Balay 1093a40ed3dSBarry Smith PetscFunctionBegin; 110533163c2SBarry Smith for (i=0; i<2*stash->size; i++) stash->flg_v[i] = -1; 111a2d1c673SSatish Balay /* wait on sends */ 112a2d1c673SSatish Balay if (nsends) { 11382502324SSatish Balay ierr = PetscMalloc(2*nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 114a2d1c673SSatish Balay ierr = MPI_Waitall(2*nsends,stash->send_waits,send_status);CHKERRQ(ierr); 115606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 116a2d1c673SSatish Balay } 117a2d1c673SSatish Balay 118c0c58ca7SSatish Balay /* Now update nmaxold to be app 10% more than max n used, this way the 119434d7ff9SSatish Balay wastage of space is reduced the next time this stash is used. 120434d7ff9SSatish Balay Also update the oldmax, only if it increases */ 121b9b97703SBarry Smith if (stash->n) { 12294b769a5SSatish Balay bs2 = stash->bs*stash->bs; 1238a9378f0SSatish Balay oldnmax = ((int)(stash->n * 1.1) + 5)*bs2; 124434d7ff9SSatish Balay if (oldnmax > stash->oldnmax) stash->oldnmax = oldnmax; 125b9b97703SBarry Smith } 126434d7ff9SSatish Balay 127d07ff455SSatish Balay stash->nmax = 0; 128d07ff455SSatish Balay stash->n = 0; 1294c1ff481SSatish Balay stash->reallocs = -1; 130a2d1c673SSatish Balay stash->nprocessed = 0; 1316bf464f9SBarry Smith ierr = PetscMatStashSpaceDestroy(&stash->space_head);CHKERRQ(ierr); 13282740460SHong Zhang stash->space = 0; 133606d414cSSatish Balay ierr = PetscFree(stash->send_waits);CHKERRQ(ierr); 134606d414cSSatish Balay ierr = PetscFree(stash->recv_waits);CHKERRQ(ierr); 135c05d87d6SBarry Smith ierr = PetscFree2(stash->svalues,stash->sindices);CHKERRQ(ierr); 136c05d87d6SBarry Smith ierr = PetscFree(stash->rvalues[0]);CHKERRQ(ierr); 137606d414cSSatish Balay ierr = PetscFree(stash->rvalues);CHKERRQ(ierr); 138c05d87d6SBarry Smith ierr = PetscFree(stash->rindices[0]);CHKERRQ(ierr); 139563fb871SSatish Balay ierr = PetscFree(stash->rindices);CHKERRQ(ierr); 1403a40ed3dSBarry Smith PetscFunctionReturn(0); 1419417f4adSLois Curfman McInnes } 1429417f4adSLois Curfman McInnes 1434c1ff481SSatish Balay /* 1448798bf22SSatish Balay MatStashGetInfo_Private - Gets the relavant statistics of the stash 1454c1ff481SSatish Balay 1464c1ff481SSatish Balay Input Parameters: 1474c1ff481SSatish Balay stash - the stash 14894b769a5SSatish Balay nstash - the size of the stash. Indicates the number of values stored. 1494c1ff481SSatish Balay reallocs - the number of additional mallocs incurred. 1504c1ff481SSatish Balay 1514c1ff481SSatish Balay */ 1524a2ae208SSatish Balay #undef __FUNCT__ 1534a2ae208SSatish Balay #define __FUNCT__ "MatStashGetInfo_Private" 154c1ac3661SBarry Smith PetscErrorCode MatStashGetInfo_Private(MatStash *stash,PetscInt *nstash,PetscInt *reallocs) 15597530c3fSBarry Smith { 156c1ac3661SBarry Smith PetscInt bs2 = stash->bs*stash->bs; 15794b769a5SSatish Balay 1583a40ed3dSBarry Smith PetscFunctionBegin; 1591ecfd215SBarry Smith if (nstash) *nstash = stash->n*bs2; 1601ecfd215SBarry Smith if (reallocs) { 161434d7ff9SSatish Balay if (stash->reallocs < 0) *reallocs = 0; 162434d7ff9SSatish Balay else *reallocs = stash->reallocs; 1631ecfd215SBarry Smith } 164bc5ccf88SSatish Balay PetscFunctionReturn(0); 165bc5ccf88SSatish Balay } 1664c1ff481SSatish Balay 1674c1ff481SSatish Balay /* 1688798bf22SSatish Balay MatStashSetInitialSize_Private - Sets the initial size of the stash 1694c1ff481SSatish Balay 1704c1ff481SSatish Balay Input Parameters: 1714c1ff481SSatish Balay stash - the stash 1724c1ff481SSatish Balay max - the value that is used as the max size of the stash. 1734c1ff481SSatish Balay this value is used while allocating memory. 1744c1ff481SSatish Balay */ 1754a2ae208SSatish Balay #undef __FUNCT__ 1764a2ae208SSatish Balay #define __FUNCT__ "MatStashSetInitialSize_Private" 177c1ac3661SBarry Smith PetscErrorCode MatStashSetInitialSize_Private(MatStash *stash,PetscInt max) 178bc5ccf88SSatish Balay { 179bc5ccf88SSatish Balay PetscFunctionBegin; 180434d7ff9SSatish Balay stash->umax = max; 1813a40ed3dSBarry Smith PetscFunctionReturn(0); 18297530c3fSBarry Smith } 18397530c3fSBarry Smith 1848798bf22SSatish Balay /* MatStashExpand_Private - Expand the stash. This function is called 1854c1ff481SSatish Balay when the space in the stash is not sufficient to add the new values 1864c1ff481SSatish Balay being inserted into the stash. 1874c1ff481SSatish Balay 1884c1ff481SSatish Balay Input Parameters: 1894c1ff481SSatish Balay stash - the stash 1904c1ff481SSatish Balay incr - the minimum increase requested 1914c1ff481SSatish Balay 1924c1ff481SSatish Balay Notes: 1934c1ff481SSatish Balay This routine doubles the currently used memory. 1944c1ff481SSatish Balay */ 1954a2ae208SSatish Balay #undef __FUNCT__ 1964a2ae208SSatish Balay #define __FUNCT__ "MatStashExpand_Private" 197c1ac3661SBarry Smith static PetscErrorCode MatStashExpand_Private(MatStash *stash,PetscInt incr) 1989417f4adSLois Curfman McInnes { 1996849ba73SBarry Smith PetscErrorCode ierr; 2005bd3b8fbSHong Zhang PetscInt newnmax,bs2= stash->bs*stash->bs; 2019417f4adSLois Curfman McInnes 2023a40ed3dSBarry Smith PetscFunctionBegin; 2039417f4adSLois Curfman McInnes /* allocate a larger stash */ 204c481ceb5SSatish Balay if (!stash->oldnmax && !stash->nmax) { /* new stash */ 205434d7ff9SSatish Balay if (stash->umax) newnmax = stash->umax/bs2; 206434d7ff9SSatish Balay else newnmax = DEFAULT_STASH_SIZE/bs2; 207c481ceb5SSatish Balay } else if (!stash->nmax) { /* resuing stash */ 208434d7ff9SSatish Balay if (stash->umax > stash->oldnmax) newnmax = stash->umax/bs2; 209434d7ff9SSatish Balay else newnmax = stash->oldnmax/bs2; 210434d7ff9SSatish Balay } else newnmax = stash->nmax*2; 2114c1ff481SSatish Balay if (newnmax < (stash->nmax + incr)) newnmax += 2*incr; 212d07ff455SSatish Balay 21375cae7c1SHong Zhang /* Get a MatStashSpace and attach it to stash */ 21475cae7c1SHong Zhang ierr = PetscMatStashSpaceGet(bs2,newnmax,&stash->space);CHKERRQ(ierr); 215b087b6d6SSatish Balay if (!stash->space_head) { /* new stash or resuing stash->oldnmax */ 216b087b6d6SSatish Balay stash->space_head = stash->space; 21775cae7c1SHong Zhang } 218b087b6d6SSatish Balay 219bc5ccf88SSatish Balay stash->reallocs++; 22075cae7c1SHong Zhang stash->nmax = newnmax; 221bc5ccf88SSatish Balay PetscFunctionReturn(0); 222bc5ccf88SSatish Balay } 223bc5ccf88SSatish Balay /* 2248798bf22SSatish Balay MatStashValuesRow_Private - inserts values into the stash. This function 2254c1ff481SSatish Balay expects the values to be roworiented. Multiple columns belong to the same row 2264c1ff481SSatish Balay can be inserted with a single call to this function. 2274c1ff481SSatish Balay 2284c1ff481SSatish Balay Input Parameters: 2294c1ff481SSatish Balay stash - the stash 2304c1ff481SSatish Balay row - the global row correspoiding to the values 2314c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 2324c1ff481SSatish Balay idxn - the global column indices corresponding to each of the values. 2334c1ff481SSatish Balay values - the values inserted 234bc5ccf88SSatish Balay */ 2354a2ae208SSatish Balay #undef __FUNCT__ 2364a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesRow_Private" 237ace3abfcSBarry Smith PetscErrorCode MatStashValuesRow_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscBool ignorezeroentries) 238bc5ccf88SSatish Balay { 239dfbe8321SBarry Smith PetscErrorCode ierr; 240b400d20cSBarry Smith PetscInt i,k,cnt = 0; 24175cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 242bc5ccf88SSatish Balay 243bc5ccf88SSatish Balay PetscFunctionBegin; 2444c1ff481SSatish Balay /* Check and see if we have sufficient memory */ 24575cae7c1SHong Zhang if (!space || space->local_remaining < n){ 2468798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 2479417f4adSLois Curfman McInnes } 24875cae7c1SHong Zhang space = stash->space; 24975cae7c1SHong Zhang k = space->local_used; 2504c1ff481SSatish Balay for (i=0; i<n; i++) { 25188c3974fSBarry Smith if (ignorezeroentries && (values[i] == 0.0)) continue; 25275cae7c1SHong Zhang space->idx[k] = row; 25375cae7c1SHong Zhang space->idy[k] = idxn[i]; 25475cae7c1SHong Zhang space->val[k] = values[i]; 25575cae7c1SHong Zhang k++; 256b400d20cSBarry Smith cnt++; 2579417f4adSLois Curfman McInnes } 258b400d20cSBarry Smith stash->n += cnt; 259b400d20cSBarry Smith space->local_used += cnt; 260b400d20cSBarry Smith space->local_remaining -= cnt; 261a2d1c673SSatish Balay PetscFunctionReturn(0); 262a2d1c673SSatish Balay } 26375cae7c1SHong Zhang 2644c1ff481SSatish Balay /* 2658798bf22SSatish Balay MatStashValuesCol_Private - inserts values into the stash. This function 2664c1ff481SSatish Balay expects the values to be columnoriented. Multiple columns belong to the same row 2674c1ff481SSatish Balay can be inserted with a single call to this function. 268a2d1c673SSatish Balay 2694c1ff481SSatish Balay Input Parameters: 2704c1ff481SSatish Balay stash - the stash 2714c1ff481SSatish Balay row - the global row correspoiding to the values 2724c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 2734c1ff481SSatish Balay idxn - the global column indices corresponding to each of the values. 2744c1ff481SSatish Balay values - the values inserted 2754c1ff481SSatish Balay stepval - the consecutive values are sepated by a distance of stepval. 2764c1ff481SSatish Balay this happens because the input is columnoriented. 2774c1ff481SSatish Balay */ 2784a2ae208SSatish Balay #undef __FUNCT__ 2794a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesCol_Private" 280ace3abfcSBarry Smith PetscErrorCode MatStashValuesCol_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt stepval,PetscBool ignorezeroentries) 281a2d1c673SSatish Balay { 282dfbe8321SBarry Smith PetscErrorCode ierr; 28350e9ab7cSBarry Smith PetscInt i,k,cnt = 0; 28475cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 285a2d1c673SSatish Balay 2864c1ff481SSatish Balay PetscFunctionBegin; 2874c1ff481SSatish Balay /* Check and see if we have sufficient memory */ 28875cae7c1SHong Zhang if (!space || space->local_remaining < n){ 2898798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 2904c1ff481SSatish Balay } 29175cae7c1SHong Zhang space = stash->space; 29275cae7c1SHong Zhang k = space->local_used; 2934c1ff481SSatish Balay for (i=0; i<n; i++) { 29488c3974fSBarry Smith if (ignorezeroentries && (values[i*stepval] == 0.0)) continue; 29575cae7c1SHong Zhang space->idx[k] = row; 29675cae7c1SHong Zhang space->idy[k] = idxn[i]; 29775cae7c1SHong Zhang space->val[k] = values[i*stepval]; 29875cae7c1SHong Zhang k++; 299b400d20cSBarry Smith cnt++; 3004c1ff481SSatish Balay } 301b400d20cSBarry Smith stash->n += cnt; 302b400d20cSBarry Smith space->local_used += cnt; 303b400d20cSBarry Smith space->local_remaining -= cnt; 3044c1ff481SSatish Balay PetscFunctionReturn(0); 3054c1ff481SSatish Balay } 3064c1ff481SSatish Balay 3074c1ff481SSatish Balay /* 3088798bf22SSatish Balay MatStashValuesRowBlocked_Private - inserts blocks of values into the stash. 3094c1ff481SSatish Balay This function expects the values to be roworiented. Multiple columns belong 3104c1ff481SSatish Balay to the same block-row can be inserted with a single call to this function. 3114c1ff481SSatish Balay This function extracts the sub-block of values based on the dimensions of 3124c1ff481SSatish Balay the original input block, and the row,col values corresponding to the blocks. 3134c1ff481SSatish Balay 3144c1ff481SSatish Balay Input Parameters: 3154c1ff481SSatish Balay stash - the stash 3164c1ff481SSatish Balay row - the global block-row correspoiding to the values 3174c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 3184c1ff481SSatish Balay idxn - the global block-column indices corresponding to each of the blocks of 3194c1ff481SSatish Balay values. Each block is of size bs*bs. 3204c1ff481SSatish Balay values - the values inserted 3214c1ff481SSatish Balay rmax - the number of block-rows in the original block. 3224c1ff481SSatish Balay cmax - the number of block-columsn on the original block. 3234c1ff481SSatish Balay idx - the index of the current block-row in the original block. 3244c1ff481SSatish Balay */ 3254a2ae208SSatish Balay #undef __FUNCT__ 3264a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesRowBlocked_Private" 32754f21887SBarry Smith PetscErrorCode MatStashValuesRowBlocked_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt rmax,PetscInt cmax,PetscInt idx) 3284c1ff481SSatish Balay { 329dfbe8321SBarry Smith PetscErrorCode ierr; 33075cae7c1SHong Zhang PetscInt i,j,k,bs2,bs=stash->bs,l; 33154f21887SBarry Smith const PetscScalar *vals; 33254f21887SBarry Smith PetscScalar *array; 33375cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 334a2d1c673SSatish Balay 335a2d1c673SSatish Balay PetscFunctionBegin; 33675cae7c1SHong Zhang if (!space || space->local_remaining < n){ 3378798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 338a2d1c673SSatish Balay } 33975cae7c1SHong Zhang space = stash->space; 34075cae7c1SHong Zhang l = space->local_used; 34175cae7c1SHong Zhang bs2 = bs*bs; 3424c1ff481SSatish Balay for (i=0; i<n; i++) { 34375cae7c1SHong Zhang space->idx[l] = row; 34475cae7c1SHong Zhang space->idy[l] = idxn[i]; 34575cae7c1SHong Zhang /* Now copy over the block of values. Store the values column oriented. 34675cae7c1SHong Zhang This enables inserting multiple blocks belonging to a row with a single 34775cae7c1SHong Zhang funtion call */ 34875cae7c1SHong Zhang array = space->val + bs2*l; 34975cae7c1SHong Zhang vals = values + idx*bs2*n + bs*i; 35075cae7c1SHong Zhang for (j=0; j<bs; j++) { 35175cae7c1SHong Zhang for (k=0; k<bs; k++) array[k*bs] = vals[k]; 35275cae7c1SHong Zhang array++; 35375cae7c1SHong Zhang vals += cmax*bs; 35475cae7c1SHong Zhang } 35575cae7c1SHong Zhang l++; 356a2d1c673SSatish Balay } 3575bd3b8fbSHong Zhang stash->n += n; 35875cae7c1SHong Zhang space->local_used += n; 35975cae7c1SHong Zhang space->local_remaining -= n; 3604c1ff481SSatish Balay PetscFunctionReturn(0); 3614c1ff481SSatish Balay } 3624c1ff481SSatish Balay 3634c1ff481SSatish Balay /* 3648798bf22SSatish Balay MatStashValuesColBlocked_Private - inserts blocks of values into the stash. 3654c1ff481SSatish Balay This function expects the values to be roworiented. Multiple columns belong 3664c1ff481SSatish Balay to the same block-row can be inserted with a single call to this function. 3674c1ff481SSatish Balay This function extracts the sub-block of values based on the dimensions of 3684c1ff481SSatish Balay the original input block, and the row,col values corresponding to the blocks. 3694c1ff481SSatish Balay 3704c1ff481SSatish Balay Input Parameters: 3714c1ff481SSatish Balay stash - the stash 3724c1ff481SSatish Balay row - the global block-row correspoiding to the values 3734c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 3744c1ff481SSatish Balay idxn - the global block-column indices corresponding to each of the blocks of 3754c1ff481SSatish Balay values. Each block is of size bs*bs. 3764c1ff481SSatish Balay values - the values inserted 3774c1ff481SSatish Balay rmax - the number of block-rows in the original block. 3784c1ff481SSatish Balay cmax - the number of block-columsn on the original block. 3794c1ff481SSatish Balay idx - the index of the current block-row in the original block. 3804c1ff481SSatish Balay */ 3814a2ae208SSatish Balay #undef __FUNCT__ 3824a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesColBlocked_Private" 38354f21887SBarry Smith PetscErrorCode MatStashValuesColBlocked_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt rmax,PetscInt cmax,PetscInt idx) 3844c1ff481SSatish Balay { 385dfbe8321SBarry Smith PetscErrorCode ierr; 38675cae7c1SHong Zhang PetscInt i,j,k,bs2,bs=stash->bs,l; 38754f21887SBarry Smith const PetscScalar *vals; 38854f21887SBarry Smith PetscScalar *array; 38975cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 3904c1ff481SSatish Balay 3914c1ff481SSatish Balay PetscFunctionBegin; 39275cae7c1SHong Zhang if (!space || space->local_remaining < n){ 3938798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 3944c1ff481SSatish Balay } 39575cae7c1SHong Zhang space = stash->space; 39675cae7c1SHong Zhang l = space->local_used; 39775cae7c1SHong Zhang bs2 = bs*bs; 3984c1ff481SSatish Balay for (i=0; i<n; i++) { 39975cae7c1SHong Zhang space->idx[l] = row; 40075cae7c1SHong Zhang space->idy[l] = idxn[i]; 40175cae7c1SHong Zhang /* Now copy over the block of values. Store the values column oriented. 40275cae7c1SHong Zhang This enables inserting multiple blocks belonging to a row with a single 40375cae7c1SHong Zhang funtion call */ 40475cae7c1SHong Zhang array = space->val + bs2*l; 40575cae7c1SHong Zhang vals = values + idx*bs2*n + bs*i; 40675cae7c1SHong Zhang for (j=0; j<bs; j++) { 40775cae7c1SHong Zhang for (k=0; k<bs; k++) {array[k] = vals[k];} 40875cae7c1SHong Zhang array += bs; 40975cae7c1SHong Zhang vals += rmax*bs; 41075cae7c1SHong Zhang } 4115bd3b8fbSHong Zhang l++; 412a2d1c673SSatish Balay } 4135bd3b8fbSHong Zhang stash->n += n; 41475cae7c1SHong Zhang space->local_used += n; 41575cae7c1SHong Zhang space->local_remaining -= n; 4163a40ed3dSBarry Smith PetscFunctionReturn(0); 4179417f4adSLois Curfman McInnes } 4184c1ff481SSatish Balay /* 4198798bf22SSatish Balay MatStashScatterBegin_Private - Initiates the transfer of values to the 4204c1ff481SSatish Balay correct owners. This function goes through the stash, and check the 4214c1ff481SSatish Balay owners of each stashed value, and sends the values off to the owner 4224c1ff481SSatish Balay processors. 423bc5ccf88SSatish Balay 4244c1ff481SSatish Balay Input Parameters: 4254c1ff481SSatish Balay stash - the stash 4264c1ff481SSatish Balay owners - an array of size 'no-of-procs' which gives the ownership range 4274c1ff481SSatish Balay for each node. 4284c1ff481SSatish Balay 4294c1ff481SSatish Balay Notes: The 'owners' array in the cased of the blocked-stash has the 4304c1ff481SSatish Balay ranges specified blocked global indices, and for the regular stash in 4314c1ff481SSatish Balay the proper global indices. 4324c1ff481SSatish Balay */ 4334a2ae208SSatish Balay #undef __FUNCT__ 4344a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterBegin_Private" 4351e2582c4SBarry Smith PetscErrorCode MatStashScatterBegin_Private(Mat mat,MatStash *stash,PetscInt *owners) 436bc5ccf88SSatish Balay { 437c1ac3661SBarry Smith PetscInt *owner,*startv,*starti,tag1=stash->tag1,tag2=stash->tag2,bs2; 438fe09c992SBarry Smith PetscInt size=stash->size,nsends; 4396849ba73SBarry Smith PetscErrorCode ierr; 44075cae7c1SHong Zhang PetscInt count,*sindices,**rindices,i,j,idx,lastidx,l; 44154f21887SBarry Smith PetscScalar **rvalues,*svalues; 442bc5ccf88SSatish Balay MPI_Comm comm = stash->comm; 443563fb871SSatish Balay MPI_Request *send_waits,*recv_waits,*recv_waits1,*recv_waits2; 444fe09c992SBarry Smith PetscMPIInt *nprocs,*nlengths,nreceives; 4455bd3b8fbSHong Zhang PetscInt *sp_idx,*sp_idy; 44654f21887SBarry Smith PetscScalar *sp_val; 4475bd3b8fbSHong Zhang PetscMatStashSpace space,space_next; 448bc5ccf88SSatish Balay 449bc5ccf88SSatish Balay PetscFunctionBegin; 4504c1ff481SSatish Balay bs2 = stash->bs*stash->bs; 45175cae7c1SHong Zhang 452bc5ccf88SSatish Balay /* first count number of contributors to each processor */ 453c05d87d6SBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&nprocs);CHKERRQ(ierr); 454c05d87d6SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscMPIInt));CHKERRQ(ierr); 455c05d87d6SBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&nlengths);CHKERRQ(ierr); 456c05d87d6SBarry Smith ierr = PetscMemzero(nlengths,size*sizeof(PetscMPIInt));CHKERRQ(ierr); 457c1ac3661SBarry Smith ierr = PetscMalloc((stash->n+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); 458a2d1c673SSatish Balay 45975cae7c1SHong Zhang i = j = 0; 4607357eb19SBarry Smith lastidx = -1; 4615bd3b8fbSHong Zhang space = stash->space_head; 46275cae7c1SHong Zhang while (space != PETSC_NULL){ 46375cae7c1SHong Zhang space_next = space->next; 4645bd3b8fbSHong Zhang sp_idx = space->idx; 46575cae7c1SHong Zhang for (l=0; l<space->local_used; l++){ 4667357eb19SBarry Smith /* if indices are NOT locally sorted, need to start search at the beginning */ 4675bd3b8fbSHong Zhang if (lastidx > (idx = sp_idx[l])) j = 0; 4687357eb19SBarry Smith lastidx = idx; 4697357eb19SBarry Smith for (; j<size; j++) { 4704c1ff481SSatish Balay if (idx >= owners[j] && idx < owners[j+1]) { 471563fb871SSatish Balay nlengths[j]++; owner[i] = j; break; 472bc5ccf88SSatish Balay } 473bc5ccf88SSatish Balay } 47475cae7c1SHong Zhang i++; 47575cae7c1SHong Zhang } 47675cae7c1SHong Zhang space = space_next; 477bc5ccf88SSatish Balay } 478563fb871SSatish Balay /* Now check what procs get messages - and compute nsends. */ 479563fb871SSatish Balay for (i=0, nsends=0 ; i<size; i++) { 480563fb871SSatish Balay if (nlengths[i]) { nprocs[i] = 1; nsends ++;} 481563fb871SSatish Balay } 482bc5ccf88SSatish Balay 48354f21887SBarry Smith {PetscMPIInt *onodes,*olengths; 484563fb871SSatish Balay /* Determine the number of messages to expect, their lengths, from from-ids */ 485563fb871SSatish Balay ierr = PetscGatherNumberOfMessages(comm,nprocs,nlengths,&nreceives);CHKERRQ(ierr); 486563fb871SSatish Balay ierr = PetscGatherMessageLengths(comm,nsends,nreceives,nlengths,&onodes,&olengths);CHKERRQ(ierr); 487563fb871SSatish Balay /* since clubbing row,col - lengths are multiplied by 2 */ 488563fb871SSatish Balay for (i=0; i<nreceives; i++) olengths[i] *=2; 489563fb871SSatish Balay ierr = PetscPostIrecvInt(comm,tag1,nreceives,onodes,olengths,&rindices,&recv_waits1);CHKERRQ(ierr); 490563fb871SSatish Balay /* values are size 'bs2' lengths (and remove earlier factor 2 */ 491563fb871SSatish Balay for (i=0; i<nreceives; i++) olengths[i] = olengths[i]*bs2/2; 492563fb871SSatish Balay ierr = PetscPostIrecvScalar(comm,tag2,nreceives,onodes,olengths,&rvalues,&recv_waits2);CHKERRQ(ierr); 493563fb871SSatish Balay ierr = PetscFree(onodes);CHKERRQ(ierr); 494563fb871SSatish Balay ierr = PetscFree(olengths);CHKERRQ(ierr); 495bc5ccf88SSatish Balay } 496bc5ccf88SSatish Balay 497bc5ccf88SSatish Balay /* do sends: 498bc5ccf88SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 499bc5ccf88SSatish Balay the ith processor 500bc5ccf88SSatish Balay */ 501c05d87d6SBarry Smith ierr = PetscMalloc2(bs2*stash->n,PetscScalar,&svalues,2*(stash->n+1),PetscInt,&sindices);CHKERRQ(ierr); 502533163c2SBarry Smith ierr = PetscMalloc(2*nsends*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 503c05d87d6SBarry Smith ierr = PetscMalloc2(size,PetscInt,&startv,size,PetscInt,&starti);CHKERRQ(ierr); 504a2d1c673SSatish Balay /* use 2 sends the first with all_a, the next with all_i and all_j */ 505bc5ccf88SSatish Balay startv[0] = 0; starti[0] = 0; 506bc5ccf88SSatish Balay for (i=1; i<size; i++) { 507563fb871SSatish Balay startv[i] = startv[i-1] + nlengths[i-1]; 508533163c2SBarry Smith starti[i] = starti[i-1] + 2*nlengths[i-1]; 509bc5ccf88SSatish Balay } 51075cae7c1SHong Zhang 51175cae7c1SHong Zhang i = 0; 5125bd3b8fbSHong Zhang space = stash->space_head; 51375cae7c1SHong Zhang while (space != PETSC_NULL){ 51475cae7c1SHong Zhang space_next = space->next; 5155bd3b8fbSHong Zhang sp_idx = space->idx; 5165bd3b8fbSHong Zhang sp_idy = space->idy; 5175bd3b8fbSHong Zhang sp_val = space->val; 51875cae7c1SHong Zhang for (l=0; l<space->local_used; l++){ 519bc5ccf88SSatish Balay j = owner[i]; 520a2d1c673SSatish Balay if (bs2 == 1) { 5215bd3b8fbSHong Zhang svalues[startv[j]] = sp_val[l]; 522a2d1c673SSatish Balay } else { 523c1ac3661SBarry Smith PetscInt k; 52454f21887SBarry Smith PetscScalar *buf1,*buf2; 5254c1ff481SSatish Balay buf1 = svalues+bs2*startv[j]; 526b087b6d6SSatish Balay buf2 = space->val + bs2*l; 5274c1ff481SSatish Balay for (k=0; k<bs2; k++){ buf1[k] = buf2[k]; } 528a2d1c673SSatish Balay } 5295bd3b8fbSHong Zhang sindices[starti[j]] = sp_idx[l]; 5305bd3b8fbSHong Zhang sindices[starti[j]+nlengths[j]] = sp_idy[l]; 531bc5ccf88SSatish Balay startv[j]++; 532bc5ccf88SSatish Balay starti[j]++; 53375cae7c1SHong Zhang i++; 53475cae7c1SHong Zhang } 53575cae7c1SHong Zhang space = space_next; 536bc5ccf88SSatish Balay } 537bc5ccf88SSatish Balay startv[0] = 0; 538563fb871SSatish Balay for (i=1; i<size; i++) { startv[i] = startv[i-1] + nlengths[i-1];} 539e5d0e772SSatish Balay 540bc5ccf88SSatish Balay for (i=0,count=0; i<size; i++) { 541563fb871SSatish Balay if (nprocs[i]) { 542563fb871SSatish Balay ierr = MPI_Isend(sindices+2*startv[i],2*nlengths[i],MPIU_INT,i,tag1,comm,send_waits+count++);CHKERRQ(ierr); 543a77337e4SBarry Smith ierr = MPI_Isend(svalues+bs2*startv[i],bs2*nlengths[i],MPIU_SCALAR,i,tag2,comm,send_waits+count++);CHKERRQ(ierr); 544bc5ccf88SSatish Balay } 545b85c94c3SSatish Balay } 5466cf91177SBarry Smith #if defined(PETSC_USE_INFO) 5471e2582c4SBarry Smith ierr = PetscInfo1(mat,"No of messages: %d \n",nsends);CHKERRQ(ierr); 548e5d0e772SSatish Balay for (i=0; i<size; i++) { 549e5d0e772SSatish Balay if (nprocs[i]) { 550a77337e4SBarry Smith ierr = PetscInfo2(mat,"Mesg_to: %d: size: %d \n",i,nlengths[i]*bs2*sizeof(PetscScalar)+2*sizeof(PetscInt));CHKERRQ(ierr); 551e5d0e772SSatish Balay } 552e5d0e772SSatish Balay } 553e5d0e772SSatish Balay #endif 554c05d87d6SBarry Smith ierr = PetscFree(nlengths);CHKERRQ(ierr); 555606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 556c05d87d6SBarry Smith ierr = PetscFree2(startv,starti);CHKERRQ(ierr); 557c05d87d6SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 558a2d1c673SSatish Balay 559563fb871SSatish Balay /* recv_waits need to be contiguous for MatStashScatterGetMesg_Private() */ 560533163c2SBarry Smith ierr = PetscMalloc(2*nreceives*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 561563fb871SSatish Balay 562563fb871SSatish Balay for (i=0; i<nreceives; i++) { 563563fb871SSatish Balay recv_waits[2*i] = recv_waits1[i]; 564563fb871SSatish Balay recv_waits[2*i+1] = recv_waits2[i]; 565563fb871SSatish Balay } 566563fb871SSatish Balay stash->recv_waits = recv_waits; 567563fb871SSatish Balay ierr = PetscFree(recv_waits1);CHKERRQ(ierr); 568563fb871SSatish Balay ierr = PetscFree(recv_waits2);CHKERRQ(ierr); 569563fb871SSatish Balay 570c05d87d6SBarry Smith stash->svalues = svalues; 571c05d87d6SBarry Smith stash->sindices = sindices; 572c05d87d6SBarry Smith stash->rvalues = rvalues; 573c05d87d6SBarry Smith stash->rindices = rindices; 574c05d87d6SBarry Smith stash->send_waits = send_waits; 575c05d87d6SBarry Smith stash->nsends = nsends; 576c05d87d6SBarry Smith stash->nrecvs = nreceives; 57767318a8aSJed Brown stash->reproduce_count = 0; 578bc5ccf88SSatish Balay PetscFunctionReturn(0); 579bc5ccf88SSatish Balay } 580bc5ccf88SSatish Balay 581a2d1c673SSatish Balay /* 5828798bf22SSatish Balay MatStashScatterGetMesg_Private - This function waits on the receives posted 5838798bf22SSatish Balay in the function MatStashScatterBegin_Private() and returns one message at 5844c1ff481SSatish Balay a time to the calling function. If no messages are left, it indicates this 5854c1ff481SSatish Balay by setting flg = 0, else it sets flg = 1. 5864c1ff481SSatish Balay 5874c1ff481SSatish Balay Input Parameters: 5884c1ff481SSatish Balay stash - the stash 5894c1ff481SSatish Balay 5904c1ff481SSatish Balay Output Parameters: 5914c1ff481SSatish Balay nvals - the number of entries in the current message. 5924c1ff481SSatish Balay rows - an array of row indices (or blocked indices) corresponding to the values 5934c1ff481SSatish Balay cols - an array of columnindices (or blocked indices) corresponding to the values 5944c1ff481SSatish Balay vals - the values 5954c1ff481SSatish Balay flg - 0 indicates no more message left, and the current call has no values associated. 5964c1ff481SSatish Balay 1 indicates that the current call successfully received a message, and the 5974c1ff481SSatish Balay other output parameters nvals,rows,cols,vals are set appropriately. 598a2d1c673SSatish Balay */ 5994a2ae208SSatish Balay #undef __FUNCT__ 6004a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterGetMesg_Private" 60154f21887SBarry Smith PetscErrorCode MatStashScatterGetMesg_Private(MatStash *stash,PetscMPIInt *nvals,PetscInt **rows,PetscInt** cols,PetscScalar **vals,PetscInt *flg) 602bc5ccf88SSatish Balay { 6036849ba73SBarry Smith PetscErrorCode ierr; 604533163c2SBarry Smith PetscMPIInt i,*flg_v = stash->flg_v,i1,i2; 605fe09c992SBarry Smith PetscInt bs2; 606a2d1c673SSatish Balay MPI_Status recv_status; 607ace3abfcSBarry Smith PetscBool match_found = PETSC_FALSE; 608bc5ccf88SSatish Balay 609bc5ccf88SSatish Balay PetscFunctionBegin; 610bc5ccf88SSatish Balay 611a2d1c673SSatish Balay *flg = 0; /* When a message is discovered this is reset to 1 */ 612a2d1c673SSatish Balay /* Return if no more messages to process */ 613a2d1c673SSatish Balay if (stash->nprocessed == stash->nrecvs) { PetscFunctionReturn(0); } 614a2d1c673SSatish Balay 6154c1ff481SSatish Balay bs2 = stash->bs*stash->bs; 61667318a8aSJed Brown /* If a matching pair of receives are found, process them, and return the data to 617a2d1c673SSatish Balay the calling function. Until then keep receiving messages */ 618a2d1c673SSatish Balay while (!match_found) { 619533163c2SBarry Smith CHKMEMQ; 62067318a8aSJed Brown if (stash->reproduce) { 62167318a8aSJed Brown i = stash->reproduce_count++; 62267318a8aSJed Brown ierr = MPI_Wait(stash->recv_waits+i,&recv_status);CHKERRQ(ierr); 62367318a8aSJed Brown } else { 624a2d1c673SSatish Balay ierr = MPI_Waitany(2*stash->nrecvs,stash->recv_waits,&i,&recv_status);CHKERRQ(ierr); 62567318a8aSJed Brown } 626533163c2SBarry Smith CHKMEMQ; 627e32f2f54SBarry Smith if (recv_status.MPI_SOURCE < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Negative MPI source!"); 628533163c2SBarry Smith 62967318a8aSJed Brown /* Now pack the received message into a structure which is usable by others */ 630a2d1c673SSatish Balay if (i % 2) { 631a77337e4SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,nvals);CHKERRQ(ierr); 632c1dc657dSBarry Smith flg_v[2*recv_status.MPI_SOURCE] = i/2; 633a2d1c673SSatish Balay *nvals = *nvals/bs2; 634563fb871SSatish Balay } else { 635563fb871SSatish Balay ierr = MPI_Get_count(&recv_status,MPIU_INT,nvals);CHKERRQ(ierr); 636563fb871SSatish Balay flg_v[2*recv_status.MPI_SOURCE+1] = i/2; 637563fb871SSatish Balay *nvals = *nvals/2; /* This message has both row indices and col indices */ 638bc5ccf88SSatish Balay } 639a2d1c673SSatish Balay 640cb2b73ccSBarry Smith /* Check if we have both messages from this proc */ 641c1dc657dSBarry Smith i1 = flg_v[2*recv_status.MPI_SOURCE]; 642c1dc657dSBarry Smith i2 = flg_v[2*recv_status.MPI_SOURCE+1]; 643a2d1c673SSatish Balay if (i1 != -1 && i2 != -1) { 644563fb871SSatish Balay *rows = stash->rindices[i2]; 645a2d1c673SSatish Balay *cols = *rows + *nvals; 646563fb871SSatish Balay *vals = stash->rvalues[i1]; 647a2d1c673SSatish Balay *flg = 1; 648a2d1c673SSatish Balay stash->nprocessed ++; 64935d8aa7fSBarry Smith match_found = PETSC_TRUE; 650bc5ccf88SSatish Balay } 651bc5ccf88SSatish Balay } 652bc5ccf88SSatish Balay PetscFunctionReturn(0); 653bc5ccf88SSatish Balay } 654