1be1d678aSKris Buschelman #define PETSCMAT_DLL 22d5177cdSBarry Smith 37c4f633dSBarry Smith #include "private/matimpl.h" 45bd3b8fbSHong Zhang 5bc5ccf88SSatish Balay #define DEFAULT_STASH_SIZE 10000 64c1ff481SSatish Balay 79417f4adSLois Curfman McInnes /* 88798bf22SSatish Balay MatStashCreate_Private - Creates a stash,currently used for all the parallel 94c1ff481SSatish Balay matrix implementations. The stash is where elements of a matrix destined 104c1ff481SSatish Balay to be stored on other processors are kept until matrix assembly is done. 119417f4adSLois Curfman McInnes 124c1ff481SSatish Balay This is a simple minded stash. Simply adds entries to end of stash. 134c1ff481SSatish Balay 144c1ff481SSatish Balay Input Parameters: 154c1ff481SSatish Balay comm - communicator, required for scatters. 164c1ff481SSatish Balay bs - stash block size. used when stashing blocks of values 174c1ff481SSatish Balay 184c1ff481SSatish Balay Output Parameters: 194c1ff481SSatish Balay stash - the newly created stash 209417f4adSLois Curfman McInnes */ 214a2ae208SSatish Balay #undef __FUNCT__ 224a2ae208SSatish Balay #define __FUNCT__ "MatStashCreate_Private" 23c1ac3661SBarry Smith PetscErrorCode MatStashCreate_Private(MPI_Comm comm,PetscInt bs,MatStash *stash) 249417f4adSLois Curfman McInnes { 25dfbe8321SBarry Smith PetscErrorCode ierr; 26c1ac3661SBarry Smith PetscInt max,*opt,nopt; 27f1af5d2fSBarry Smith PetscTruth flg; 28bc5ccf88SSatish Balay 293a40ed3dSBarry Smith PetscFunctionBegin; 30bc5ccf88SSatish Balay /* Require 2 tags,get the second using PetscCommGetNewTag() */ 31752ec6e0SSatish Balay stash->comm = comm; 32752ec6e0SSatish Balay ierr = PetscCommGetNewTag(stash->comm,&stash->tag1);CHKERRQ(ierr); 33a2d1c673SSatish Balay ierr = PetscCommGetNewTag(stash->comm,&stash->tag2);CHKERRQ(ierr); 34a2d1c673SSatish Balay ierr = MPI_Comm_size(stash->comm,&stash->size);CHKERRQ(ierr); 35a2d1c673SSatish Balay ierr = MPI_Comm_rank(stash->comm,&stash->rank);CHKERRQ(ierr); 36bc5ccf88SSatish Balay 37434d7ff9SSatish Balay nopt = stash->size; 38d7d82daaSBarry Smith ierr = PetscMalloc(nopt*sizeof(PetscInt),&opt);CHKERRQ(ierr); 39b0a32e0cSBarry Smith ierr = PetscOptionsGetIntArray(PETSC_NULL,"-matstash_initial_size",opt,&nopt,&flg);CHKERRQ(ierr); 40434d7ff9SSatish Balay if (flg) { 41434d7ff9SSatish Balay if (nopt == 1) max = opt[0]; 42434d7ff9SSatish Balay else if (nopt == stash->size) max = opt[stash->rank]; 43434d7ff9SSatish Balay else if (stash->rank < nopt) max = opt[stash->rank]; 44f4ab19daSSatish Balay else max = 0; /* Use default */ 45434d7ff9SSatish Balay stash->umax = max; 46434d7ff9SSatish Balay } else { 47434d7ff9SSatish Balay stash->umax = 0; 48434d7ff9SSatish Balay } 49606d414cSSatish Balay ierr = PetscFree(opt);CHKERRQ(ierr); 504c1ff481SSatish Balay if (bs <= 0) bs = 1; 51a2d1c673SSatish Balay 524c1ff481SSatish Balay stash->bs = bs; 539417f4adSLois Curfman McInnes stash->nmax = 0; 54434d7ff9SSatish Balay stash->oldnmax = 0; 559417f4adSLois Curfman McInnes stash->n = 0; 564c1ff481SSatish Balay stash->reallocs = -1; 5775cae7c1SHong Zhang stash->space_head = 0; 5875cae7c1SHong Zhang stash->space = 0; 599417f4adSLois Curfman McInnes 60bc5ccf88SSatish Balay stash->send_waits = 0; 61bc5ccf88SSatish Balay stash->recv_waits = 0; 62a2d1c673SSatish Balay stash->send_status = 0; 63bc5ccf88SSatish Balay stash->nsends = 0; 64bc5ccf88SSatish Balay stash->nrecvs = 0; 65bc5ccf88SSatish Balay stash->svalues = 0; 66bc5ccf88SSatish Balay stash->rvalues = 0; 67563fb871SSatish Balay stash->rindices = 0; 68a2d1c673SSatish Balay stash->nprocessed = 0; 693a40ed3dSBarry Smith PetscFunctionReturn(0); 709417f4adSLois Curfman McInnes } 719417f4adSLois Curfman McInnes 724c1ff481SSatish Balay /* 738798bf22SSatish Balay MatStashDestroy_Private - Destroy the stash 744c1ff481SSatish Balay */ 754a2ae208SSatish Balay #undef __FUNCT__ 764a2ae208SSatish Balay #define __FUNCT__ "MatStashDestroy_Private" 77dfbe8321SBarry Smith PetscErrorCode MatStashDestroy_Private(MatStash *stash) 789417f4adSLois Curfman McInnes { 79dfbe8321SBarry Smith PetscErrorCode ierr; 80a2d1c673SSatish Balay 81bc5ccf88SSatish Balay PetscFunctionBegin; 8275cae7c1SHong Zhang if (stash->space_head){ 8375cae7c1SHong Zhang ierr = PetscMatStashSpaceDestroy(stash->space_head);CHKERRQ(ierr); 8475cae7c1SHong Zhang stash->space_head = 0; 8582740460SHong Zhang stash->space = 0; 8675cae7c1SHong Zhang } 87bc5ccf88SSatish Balay PetscFunctionReturn(0); 88bc5ccf88SSatish Balay } 89bc5ccf88SSatish Balay 904c1ff481SSatish Balay /* 918798bf22SSatish Balay MatStashScatterEnd_Private - This is called as the fial stage of 924c1ff481SSatish Balay scatter. The final stages of messagepassing is done here, and 934c1ff481SSatish Balay all the memory used for messagepassing is cleanedu up. This 944c1ff481SSatish Balay routine also resets the stash, and deallocates the memory used 954c1ff481SSatish Balay for the stash. It also keeps track of the current memory usage 964c1ff481SSatish Balay so that the same value can be used the next time through. 974c1ff481SSatish Balay */ 984a2ae208SSatish Balay #undef __FUNCT__ 994a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterEnd_Private" 100dfbe8321SBarry Smith PetscErrorCode MatStashScatterEnd_Private(MatStash *stash) 101bc5ccf88SSatish Balay { 1026849ba73SBarry Smith PetscErrorCode ierr; 1035bd3b8fbSHong Zhang PetscInt nsends=stash->nsends,bs2,oldnmax; 104a2d1c673SSatish Balay MPI_Status *send_status; 105a2d1c673SSatish Balay 1063a40ed3dSBarry Smith PetscFunctionBegin; 107a2d1c673SSatish Balay /* wait on sends */ 108a2d1c673SSatish Balay if (nsends) { 10982502324SSatish Balay ierr = PetscMalloc(2*nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 110a2d1c673SSatish Balay ierr = MPI_Waitall(2*nsends,stash->send_waits,send_status);CHKERRQ(ierr); 111606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 112a2d1c673SSatish Balay } 113a2d1c673SSatish Balay 114c0c58ca7SSatish Balay /* Now update nmaxold to be app 10% more than max n used, this way the 115434d7ff9SSatish Balay wastage of space is reduced the next time this stash is used. 116434d7ff9SSatish Balay Also update the oldmax, only if it increases */ 117b9b97703SBarry Smith if (stash->n) { 11894b769a5SSatish Balay bs2 = stash->bs*stash->bs; 1198a9378f0SSatish Balay oldnmax = ((int)(stash->n * 1.1) + 5)*bs2; 120434d7ff9SSatish Balay if (oldnmax > stash->oldnmax) stash->oldnmax = oldnmax; 121b9b97703SBarry Smith } 122434d7ff9SSatish Balay 123d07ff455SSatish Balay stash->nmax = 0; 124d07ff455SSatish Balay stash->n = 0; 1254c1ff481SSatish Balay stash->reallocs = -1; 126a2d1c673SSatish Balay stash->nprocessed = 0; 12775cae7c1SHong Zhang if (stash->space_head){ 12875cae7c1SHong Zhang ierr = PetscMatStashSpaceDestroy(stash->space_head);CHKERRQ(ierr); 12975cae7c1SHong Zhang stash->space_head = 0; 13082740460SHong Zhang stash->space = 0; 13175cae7c1SHong Zhang } 132606d414cSSatish Balay ierr = PetscFree(stash->send_waits);CHKERRQ(ierr); 133606d414cSSatish Balay stash->send_waits = 0; 134606d414cSSatish Balay ierr = PetscFree(stash->recv_waits);CHKERRQ(ierr); 135606d414cSSatish Balay stash->recv_waits = 0; 136*c05d87d6SBarry Smith ierr = PetscFree2(stash->svalues,stash->sindices);CHKERRQ(ierr); 137606d414cSSatish Balay stash->svalues = 0; 138*c05d87d6SBarry Smith ierr = PetscFree(stash->rvalues[0]);CHKERRQ(ierr); 139606d414cSSatish Balay ierr = PetscFree(stash->rvalues);CHKERRQ(ierr); 140606d414cSSatish Balay stash->rvalues = 0; 141*c05d87d6SBarry Smith ierr = PetscFree(stash->rindices[0]);CHKERRQ(ierr); 142563fb871SSatish Balay ierr = PetscFree(stash->rindices);CHKERRQ(ierr); 143563fb871SSatish Balay stash->rindices = 0; 1443a40ed3dSBarry Smith PetscFunctionReturn(0); 1459417f4adSLois Curfman McInnes } 1469417f4adSLois Curfman McInnes 1474c1ff481SSatish Balay /* 1488798bf22SSatish Balay MatStashGetInfo_Private - Gets the relavant statistics of the stash 1494c1ff481SSatish Balay 1504c1ff481SSatish Balay Input Parameters: 1514c1ff481SSatish Balay stash - the stash 15294b769a5SSatish Balay nstash - the size of the stash. Indicates the number of values stored. 1534c1ff481SSatish Balay reallocs - the number of additional mallocs incurred. 1544c1ff481SSatish Balay 1554c1ff481SSatish Balay */ 1564a2ae208SSatish Balay #undef __FUNCT__ 1574a2ae208SSatish Balay #define __FUNCT__ "MatStashGetInfo_Private" 158c1ac3661SBarry Smith PetscErrorCode MatStashGetInfo_Private(MatStash *stash,PetscInt *nstash,PetscInt *reallocs) 15997530c3fSBarry Smith { 160c1ac3661SBarry Smith PetscInt bs2 = stash->bs*stash->bs; 16194b769a5SSatish Balay 1623a40ed3dSBarry Smith PetscFunctionBegin; 1631ecfd215SBarry Smith if (nstash) *nstash = stash->n*bs2; 1641ecfd215SBarry Smith if (reallocs) { 165434d7ff9SSatish Balay if (stash->reallocs < 0) *reallocs = 0; 166434d7ff9SSatish Balay else *reallocs = stash->reallocs; 1671ecfd215SBarry Smith } 168bc5ccf88SSatish Balay PetscFunctionReturn(0); 169bc5ccf88SSatish Balay } 1704c1ff481SSatish Balay 1714c1ff481SSatish Balay /* 1728798bf22SSatish Balay MatStashSetInitialSize_Private - Sets the initial size of the stash 1734c1ff481SSatish Balay 1744c1ff481SSatish Balay Input Parameters: 1754c1ff481SSatish Balay stash - the stash 1764c1ff481SSatish Balay max - the value that is used as the max size of the stash. 1774c1ff481SSatish Balay this value is used while allocating memory. 1784c1ff481SSatish Balay */ 1794a2ae208SSatish Balay #undef __FUNCT__ 1804a2ae208SSatish Balay #define __FUNCT__ "MatStashSetInitialSize_Private" 181c1ac3661SBarry Smith PetscErrorCode MatStashSetInitialSize_Private(MatStash *stash,PetscInt max) 182bc5ccf88SSatish Balay { 183bc5ccf88SSatish Balay PetscFunctionBegin; 184434d7ff9SSatish Balay stash->umax = max; 1853a40ed3dSBarry Smith PetscFunctionReturn(0); 18697530c3fSBarry Smith } 18797530c3fSBarry Smith 1888798bf22SSatish Balay /* MatStashExpand_Private - Expand the stash. This function is called 1894c1ff481SSatish Balay when the space in the stash is not sufficient to add the new values 1904c1ff481SSatish Balay being inserted into the stash. 1914c1ff481SSatish Balay 1924c1ff481SSatish Balay Input Parameters: 1934c1ff481SSatish Balay stash - the stash 1944c1ff481SSatish Balay incr - the minimum increase requested 1954c1ff481SSatish Balay 1964c1ff481SSatish Balay Notes: 1974c1ff481SSatish Balay This routine doubles the currently used memory. 1984c1ff481SSatish Balay */ 1994a2ae208SSatish Balay #undef __FUNCT__ 2004a2ae208SSatish Balay #define __FUNCT__ "MatStashExpand_Private" 201c1ac3661SBarry Smith static PetscErrorCode MatStashExpand_Private(MatStash *stash,PetscInt incr) 2029417f4adSLois Curfman McInnes { 2036849ba73SBarry Smith PetscErrorCode ierr; 2045bd3b8fbSHong Zhang PetscInt newnmax,bs2= stash->bs*stash->bs; 2059417f4adSLois Curfman McInnes 2063a40ed3dSBarry Smith PetscFunctionBegin; 2079417f4adSLois Curfman McInnes /* allocate a larger stash */ 208c481ceb5SSatish Balay if (!stash->oldnmax && !stash->nmax) { /* new stash */ 209434d7ff9SSatish Balay if (stash->umax) newnmax = stash->umax/bs2; 210434d7ff9SSatish Balay else newnmax = DEFAULT_STASH_SIZE/bs2; 211c481ceb5SSatish Balay } else if (!stash->nmax) { /* resuing stash */ 212434d7ff9SSatish Balay if (stash->umax > stash->oldnmax) newnmax = stash->umax/bs2; 213434d7ff9SSatish Balay else newnmax = stash->oldnmax/bs2; 214434d7ff9SSatish Balay } else newnmax = stash->nmax*2; 2154c1ff481SSatish Balay if (newnmax < (stash->nmax + incr)) newnmax += 2*incr; 216d07ff455SSatish Balay 21775cae7c1SHong Zhang /* Get a MatStashSpace and attach it to stash */ 21875cae7c1SHong Zhang ierr = PetscMatStashSpaceGet(bs2,newnmax,&stash->space);CHKERRQ(ierr); 219b087b6d6SSatish Balay if (!stash->space_head) { /* new stash or resuing stash->oldnmax */ 220b087b6d6SSatish Balay stash->space_head = stash->space; 22175cae7c1SHong Zhang } 222b087b6d6SSatish Balay 223bc5ccf88SSatish Balay stash->reallocs++; 22475cae7c1SHong Zhang stash->nmax = newnmax; 225bc5ccf88SSatish Balay PetscFunctionReturn(0); 226bc5ccf88SSatish Balay } 227bc5ccf88SSatish Balay /* 2288798bf22SSatish Balay MatStashValuesRow_Private - inserts values into the stash. This function 2294c1ff481SSatish Balay expects the values to be roworiented. Multiple columns belong to the same row 2304c1ff481SSatish Balay can be inserted with a single call to this function. 2314c1ff481SSatish Balay 2324c1ff481SSatish Balay Input Parameters: 2334c1ff481SSatish Balay stash - the stash 2344c1ff481SSatish Balay row - the global row correspoiding to the values 2354c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 2364c1ff481SSatish Balay idxn - the global column indices corresponding to each of the values. 2374c1ff481SSatish Balay values - the values inserted 238bc5ccf88SSatish Balay */ 2394a2ae208SSatish Balay #undef __FUNCT__ 2404a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesRow_Private" 241b400d20cSBarry Smith PetscErrorCode MatStashValuesRow_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscTruth ignorezeroentries) 242bc5ccf88SSatish Balay { 243dfbe8321SBarry Smith PetscErrorCode ierr; 244b400d20cSBarry Smith PetscInt i,k,cnt = 0; 24575cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 246bc5ccf88SSatish Balay 247bc5ccf88SSatish Balay PetscFunctionBegin; 2484c1ff481SSatish Balay /* Check and see if we have sufficient memory */ 24975cae7c1SHong Zhang if (!space || space->local_remaining < n){ 2508798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 2519417f4adSLois Curfman McInnes } 25275cae7c1SHong Zhang space = stash->space; 25375cae7c1SHong Zhang k = space->local_used; 2544c1ff481SSatish Balay for (i=0; i<n; i++) { 25588c3974fSBarry Smith if (ignorezeroentries && (values[i] == 0.0)) continue; 25675cae7c1SHong Zhang space->idx[k] = row; 25775cae7c1SHong Zhang space->idy[k] = idxn[i]; 25875cae7c1SHong Zhang space->val[k] = values[i]; 25975cae7c1SHong Zhang k++; 260b400d20cSBarry Smith cnt++; 2619417f4adSLois Curfman McInnes } 262b400d20cSBarry Smith stash->n += cnt; 263b400d20cSBarry Smith space->local_used += cnt; 264b400d20cSBarry Smith space->local_remaining -= cnt; 265a2d1c673SSatish Balay PetscFunctionReturn(0); 266a2d1c673SSatish Balay } 26775cae7c1SHong Zhang 2684c1ff481SSatish Balay /* 2698798bf22SSatish Balay MatStashValuesCol_Private - inserts values into the stash. This function 2704c1ff481SSatish Balay expects the values to be columnoriented. Multiple columns belong to the same row 2714c1ff481SSatish Balay can be inserted with a single call to this function. 272a2d1c673SSatish Balay 2734c1ff481SSatish Balay Input Parameters: 2744c1ff481SSatish Balay stash - the stash 2754c1ff481SSatish Balay row - the global row correspoiding to the values 2764c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 2774c1ff481SSatish Balay idxn - the global column indices corresponding to each of the values. 2784c1ff481SSatish Balay values - the values inserted 2794c1ff481SSatish Balay stepval - the consecutive values are sepated by a distance of stepval. 2804c1ff481SSatish Balay this happens because the input is columnoriented. 2814c1ff481SSatish Balay */ 2824a2ae208SSatish Balay #undef __FUNCT__ 2834a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesCol_Private" 284b400d20cSBarry Smith PetscErrorCode MatStashValuesCol_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt stepval,PetscTruth ignorezeroentries) 285a2d1c673SSatish Balay { 286dfbe8321SBarry Smith PetscErrorCode ierr; 28750e9ab7cSBarry Smith PetscInt i,k,cnt = 0; 28875cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 289a2d1c673SSatish Balay 2904c1ff481SSatish Balay PetscFunctionBegin; 2914c1ff481SSatish Balay /* Check and see if we have sufficient memory */ 29275cae7c1SHong Zhang if (!space || space->local_remaining < n){ 2938798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 2944c1ff481SSatish Balay } 29575cae7c1SHong Zhang space = stash->space; 29675cae7c1SHong Zhang k = space->local_used; 2974c1ff481SSatish Balay for (i=0; i<n; i++) { 29888c3974fSBarry Smith if (ignorezeroentries && (values[i*stepval] == 0.0)) continue; 29975cae7c1SHong Zhang space->idx[k] = row; 30075cae7c1SHong Zhang space->idy[k] = idxn[i]; 30175cae7c1SHong Zhang space->val[k] = values[i*stepval]; 30275cae7c1SHong Zhang k++; 303b400d20cSBarry Smith cnt++; 3044c1ff481SSatish Balay } 305b400d20cSBarry Smith stash->n += cnt; 306b400d20cSBarry Smith space->local_used += cnt; 307b400d20cSBarry Smith space->local_remaining -= cnt; 3084c1ff481SSatish Balay PetscFunctionReturn(0); 3094c1ff481SSatish Balay } 3104c1ff481SSatish Balay 3114c1ff481SSatish Balay /* 3128798bf22SSatish Balay MatStashValuesRowBlocked_Private - inserts blocks of values into the stash. 3134c1ff481SSatish Balay This function expects the values to be roworiented. Multiple columns belong 3144c1ff481SSatish Balay to the same block-row can be inserted with a single call to this function. 3154c1ff481SSatish Balay This function extracts the sub-block of values based on the dimensions of 3164c1ff481SSatish Balay the original input block, and the row,col values corresponding to the blocks. 3174c1ff481SSatish Balay 3184c1ff481SSatish Balay Input Parameters: 3194c1ff481SSatish Balay stash - the stash 3204c1ff481SSatish Balay row - the global block-row correspoiding to the values 3214c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 3224c1ff481SSatish Balay idxn - the global block-column indices corresponding to each of the blocks of 3234c1ff481SSatish Balay values. Each block is of size bs*bs. 3244c1ff481SSatish Balay values - the values inserted 3254c1ff481SSatish Balay rmax - the number of block-rows in the original block. 3264c1ff481SSatish Balay cmax - the number of block-columsn on the original block. 3274c1ff481SSatish Balay idx - the index of the current block-row in the original block. 3284c1ff481SSatish Balay */ 3294a2ae208SSatish Balay #undef __FUNCT__ 3304a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesRowBlocked_Private" 33154f21887SBarry Smith PetscErrorCode MatStashValuesRowBlocked_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt rmax,PetscInt cmax,PetscInt idx) 3324c1ff481SSatish Balay { 333dfbe8321SBarry Smith PetscErrorCode ierr; 33475cae7c1SHong Zhang PetscInt i,j,k,bs2,bs=stash->bs,l; 33554f21887SBarry Smith const PetscScalar *vals; 33654f21887SBarry Smith PetscScalar *array; 33775cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 338a2d1c673SSatish Balay 339a2d1c673SSatish Balay PetscFunctionBegin; 34075cae7c1SHong Zhang if (!space || space->local_remaining < n){ 3418798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 342a2d1c673SSatish Balay } 34375cae7c1SHong Zhang space = stash->space; 34475cae7c1SHong Zhang l = space->local_used; 34575cae7c1SHong Zhang bs2 = bs*bs; 3464c1ff481SSatish Balay for (i=0; i<n; i++) { 34775cae7c1SHong Zhang space->idx[l] = row; 34875cae7c1SHong Zhang space->idy[l] = idxn[i]; 34975cae7c1SHong Zhang /* Now copy over the block of values. Store the values column oriented. 35075cae7c1SHong Zhang This enables inserting multiple blocks belonging to a row with a single 35175cae7c1SHong Zhang funtion call */ 35275cae7c1SHong Zhang array = space->val + bs2*l; 35375cae7c1SHong Zhang vals = values + idx*bs2*n + bs*i; 35475cae7c1SHong Zhang for (j=0; j<bs; j++) { 35575cae7c1SHong Zhang for (k=0; k<bs; k++) array[k*bs] = vals[k]; 35675cae7c1SHong Zhang array++; 35775cae7c1SHong Zhang vals += cmax*bs; 35875cae7c1SHong Zhang } 35975cae7c1SHong Zhang l++; 360a2d1c673SSatish Balay } 3615bd3b8fbSHong Zhang stash->n += n; 36275cae7c1SHong Zhang space->local_used += n; 36375cae7c1SHong Zhang space->local_remaining -= n; 3644c1ff481SSatish Balay PetscFunctionReturn(0); 3654c1ff481SSatish Balay } 3664c1ff481SSatish Balay 3674c1ff481SSatish Balay /* 3688798bf22SSatish Balay MatStashValuesColBlocked_Private - inserts blocks of values into the stash. 3694c1ff481SSatish Balay This function expects the values to be roworiented. Multiple columns belong 3704c1ff481SSatish Balay to the same block-row can be inserted with a single call to this function. 3714c1ff481SSatish Balay This function extracts the sub-block of values based on the dimensions of 3724c1ff481SSatish Balay the original input block, and the row,col values corresponding to the blocks. 3734c1ff481SSatish Balay 3744c1ff481SSatish Balay Input Parameters: 3754c1ff481SSatish Balay stash - the stash 3764c1ff481SSatish Balay row - the global block-row correspoiding to the values 3774c1ff481SSatish Balay n - the number of elements inserted. All elements belong to the above row. 3784c1ff481SSatish Balay idxn - the global block-column indices corresponding to each of the blocks of 3794c1ff481SSatish Balay values. Each block is of size bs*bs. 3804c1ff481SSatish Balay values - the values inserted 3814c1ff481SSatish Balay rmax - the number of block-rows in the original block. 3824c1ff481SSatish Balay cmax - the number of block-columsn on the original block. 3834c1ff481SSatish Balay idx - the index of the current block-row in the original block. 3844c1ff481SSatish Balay */ 3854a2ae208SSatish Balay #undef __FUNCT__ 3864a2ae208SSatish Balay #define __FUNCT__ "MatStashValuesColBlocked_Private" 38754f21887SBarry Smith PetscErrorCode MatStashValuesColBlocked_Private(MatStash *stash,PetscInt row,PetscInt n,const PetscInt idxn[],const PetscScalar values[],PetscInt rmax,PetscInt cmax,PetscInt idx) 3884c1ff481SSatish Balay { 389dfbe8321SBarry Smith PetscErrorCode ierr; 39075cae7c1SHong Zhang PetscInt i,j,k,bs2,bs=stash->bs,l; 39154f21887SBarry Smith const PetscScalar *vals; 39254f21887SBarry Smith PetscScalar *array; 39375cae7c1SHong Zhang PetscMatStashSpace space=stash->space; 3944c1ff481SSatish Balay 3954c1ff481SSatish Balay PetscFunctionBegin; 39675cae7c1SHong Zhang if (!space || space->local_remaining < n){ 3978798bf22SSatish Balay ierr = MatStashExpand_Private(stash,n);CHKERRQ(ierr); 3984c1ff481SSatish Balay } 39975cae7c1SHong Zhang space = stash->space; 40075cae7c1SHong Zhang l = space->local_used; 40175cae7c1SHong Zhang bs2 = bs*bs; 4024c1ff481SSatish Balay for (i=0; i<n; i++) { 40375cae7c1SHong Zhang space->idx[l] = row; 40475cae7c1SHong Zhang space->idy[l] = idxn[i]; 40575cae7c1SHong Zhang /* Now copy over the block of values. Store the values column oriented. 40675cae7c1SHong Zhang This enables inserting multiple blocks belonging to a row with a single 40775cae7c1SHong Zhang funtion call */ 40875cae7c1SHong Zhang array = space->val + bs2*l; 40975cae7c1SHong Zhang vals = values + idx*bs2*n + bs*i; 41075cae7c1SHong Zhang for (j=0; j<bs; j++) { 41175cae7c1SHong Zhang for (k=0; k<bs; k++) {array[k] = vals[k];} 41275cae7c1SHong Zhang array += bs; 41375cae7c1SHong Zhang vals += rmax*bs; 41475cae7c1SHong Zhang } 4155bd3b8fbSHong Zhang l++; 416a2d1c673SSatish Balay } 4175bd3b8fbSHong Zhang stash->n += n; 41875cae7c1SHong Zhang space->local_used += n; 41975cae7c1SHong Zhang space->local_remaining -= n; 4203a40ed3dSBarry Smith PetscFunctionReturn(0); 4219417f4adSLois Curfman McInnes } 4224c1ff481SSatish Balay /* 4238798bf22SSatish Balay MatStashScatterBegin_Private - Initiates the transfer of values to the 4244c1ff481SSatish Balay correct owners. This function goes through the stash, and check the 4254c1ff481SSatish Balay owners of each stashed value, and sends the values off to the owner 4264c1ff481SSatish Balay processors. 427bc5ccf88SSatish Balay 4284c1ff481SSatish Balay Input Parameters: 4294c1ff481SSatish Balay stash - the stash 4304c1ff481SSatish Balay owners - an array of size 'no-of-procs' which gives the ownership range 4314c1ff481SSatish Balay for each node. 4324c1ff481SSatish Balay 4334c1ff481SSatish Balay Notes: The 'owners' array in the cased of the blocked-stash has the 4344c1ff481SSatish Balay ranges specified blocked global indices, and for the regular stash in 4354c1ff481SSatish Balay the proper global indices. 4364c1ff481SSatish Balay */ 4374a2ae208SSatish Balay #undef __FUNCT__ 4384a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterBegin_Private" 4391e2582c4SBarry Smith PetscErrorCode MatStashScatterBegin_Private(Mat mat,MatStash *stash,PetscInt *owners) 440bc5ccf88SSatish Balay { 441c1ac3661SBarry Smith PetscInt *owner,*startv,*starti,tag1=stash->tag1,tag2=stash->tag2,bs2; 442fe09c992SBarry Smith PetscInt size=stash->size,nsends; 4436849ba73SBarry Smith PetscErrorCode ierr; 44475cae7c1SHong Zhang PetscInt count,*sindices,**rindices,i,j,idx,lastidx,l; 44554f21887SBarry Smith PetscScalar **rvalues,*svalues; 446bc5ccf88SSatish Balay MPI_Comm comm = stash->comm; 447563fb871SSatish Balay MPI_Request *send_waits,*recv_waits,*recv_waits1,*recv_waits2; 448fe09c992SBarry Smith PetscMPIInt *nprocs,*nlengths,nreceives; 4495bd3b8fbSHong Zhang PetscInt *sp_idx,*sp_idy; 45054f21887SBarry Smith PetscScalar *sp_val; 4515bd3b8fbSHong Zhang PetscMatStashSpace space,space_next; 452bc5ccf88SSatish Balay 453bc5ccf88SSatish Balay PetscFunctionBegin; 4544c1ff481SSatish Balay bs2 = stash->bs*stash->bs; 45575cae7c1SHong Zhang 456bc5ccf88SSatish Balay /* first count number of contributors to each processor */ 457*c05d87d6SBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&nprocs);CHKERRQ(ierr); 458*c05d87d6SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscMPIInt));CHKERRQ(ierr); 459*c05d87d6SBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&nlengths);CHKERRQ(ierr); 460*c05d87d6SBarry Smith ierr = PetscMemzero(nlengths,size*sizeof(PetscMPIInt));CHKERRQ(ierr); 461c1ac3661SBarry Smith ierr = PetscMalloc((stash->n+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); 462a2d1c673SSatish Balay 46375cae7c1SHong Zhang i = j = 0; 4647357eb19SBarry Smith lastidx = -1; 4655bd3b8fbSHong Zhang space = stash->space_head; 46675cae7c1SHong Zhang while (space != PETSC_NULL){ 46775cae7c1SHong Zhang space_next = space->next; 4685bd3b8fbSHong Zhang sp_idx = space->idx; 46975cae7c1SHong Zhang for (l=0; l<space->local_used; l++){ 4707357eb19SBarry Smith /* if indices are NOT locally sorted, need to start search at the beginning */ 4715bd3b8fbSHong Zhang if (lastidx > (idx = sp_idx[l])) j = 0; 4727357eb19SBarry Smith lastidx = idx; 4737357eb19SBarry Smith for (; j<size; j++) { 4744c1ff481SSatish Balay if (idx >= owners[j] && idx < owners[j+1]) { 475563fb871SSatish Balay nlengths[j]++; owner[i] = j; break; 476bc5ccf88SSatish Balay } 477bc5ccf88SSatish Balay } 47875cae7c1SHong Zhang i++; 47975cae7c1SHong Zhang } 48075cae7c1SHong Zhang space = space_next; 481bc5ccf88SSatish Balay } 482563fb871SSatish Balay /* Now check what procs get messages - and compute nsends. */ 483563fb871SSatish Balay for (i=0, nsends=0 ; i<size; i++) { 484563fb871SSatish Balay if (nlengths[i]) { nprocs[i] = 1; nsends ++;} 485563fb871SSatish Balay } 486bc5ccf88SSatish Balay 48754f21887SBarry Smith {PetscMPIInt *onodes,*olengths; 488563fb871SSatish Balay /* Determine the number of messages to expect, their lengths, from from-ids */ 489563fb871SSatish Balay ierr = PetscGatherNumberOfMessages(comm,nprocs,nlengths,&nreceives);CHKERRQ(ierr); 490563fb871SSatish Balay ierr = PetscGatherMessageLengths(comm,nsends,nreceives,nlengths,&onodes,&olengths);CHKERRQ(ierr); 491563fb871SSatish Balay /* since clubbing row,col - lengths are multiplied by 2 */ 492563fb871SSatish Balay for (i=0; i<nreceives; i++) olengths[i] *=2; 493563fb871SSatish Balay ierr = PetscPostIrecvInt(comm,tag1,nreceives,onodes,olengths,&rindices,&recv_waits1);CHKERRQ(ierr); 494563fb871SSatish Balay /* values are size 'bs2' lengths (and remove earlier factor 2 */ 495563fb871SSatish Balay for (i=0; i<nreceives; i++) olengths[i] = olengths[i]*bs2/2; 496563fb871SSatish Balay ierr = PetscPostIrecvScalar(comm,tag2,nreceives,onodes,olengths,&rvalues,&recv_waits2);CHKERRQ(ierr); 497563fb871SSatish Balay ierr = PetscFree(onodes);CHKERRQ(ierr); 498563fb871SSatish Balay ierr = PetscFree(olengths);CHKERRQ(ierr); 499bc5ccf88SSatish Balay } 500bc5ccf88SSatish Balay 501bc5ccf88SSatish Balay /* do sends: 502bc5ccf88SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 503bc5ccf88SSatish Balay the ith processor 504bc5ccf88SSatish Balay */ 505*c05d87d6SBarry Smith ierr = PetscMalloc2(bs2*stash->n,PetscScalar,&svalues,2*(stash->n+1),PetscInt,&sindices);CHKERRQ(ierr); 506b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 507*c05d87d6SBarry Smith ierr = PetscMalloc2(size,PetscInt,&startv,size,PetscInt,&starti);CHKERRQ(ierr); 508a2d1c673SSatish Balay /* use 2 sends the first with all_a, the next with all_i and all_j */ 509bc5ccf88SSatish Balay startv[0] = 0; starti[0] = 0; 510bc5ccf88SSatish Balay for (i=1; i<size; i++) { 511563fb871SSatish Balay startv[i] = startv[i-1] + nlengths[i-1]; 512563fb871SSatish Balay starti[i] = starti[i-1] + nlengths[i-1]*2; 513bc5ccf88SSatish Balay } 51475cae7c1SHong Zhang 51575cae7c1SHong Zhang i = 0; 5165bd3b8fbSHong Zhang space = stash->space_head; 51775cae7c1SHong Zhang while (space != PETSC_NULL){ 51875cae7c1SHong Zhang space_next = space->next; 5195bd3b8fbSHong Zhang sp_idx = space->idx; 5205bd3b8fbSHong Zhang sp_idy = space->idy; 5215bd3b8fbSHong Zhang sp_val = space->val; 52275cae7c1SHong Zhang for (l=0; l<space->local_used; l++){ 523bc5ccf88SSatish Balay j = owner[i]; 524a2d1c673SSatish Balay if (bs2 == 1) { 5255bd3b8fbSHong Zhang svalues[startv[j]] = sp_val[l]; 526a2d1c673SSatish Balay } else { 527c1ac3661SBarry Smith PetscInt k; 52854f21887SBarry Smith PetscScalar *buf1,*buf2; 5294c1ff481SSatish Balay buf1 = svalues+bs2*startv[j]; 530b087b6d6SSatish Balay buf2 = space->val + bs2*l; 5314c1ff481SSatish Balay for (k=0; k<bs2; k++){ buf1[k] = buf2[k]; } 532a2d1c673SSatish Balay } 5335bd3b8fbSHong Zhang sindices[starti[j]] = sp_idx[l]; 5345bd3b8fbSHong Zhang sindices[starti[j]+nlengths[j]] = sp_idy[l]; 535bc5ccf88SSatish Balay startv[j]++; 536bc5ccf88SSatish Balay starti[j]++; 53775cae7c1SHong Zhang i++; 53875cae7c1SHong Zhang } 53975cae7c1SHong Zhang space = space_next; 540bc5ccf88SSatish Balay } 541bc5ccf88SSatish Balay startv[0] = 0; 542563fb871SSatish Balay for (i=1; i<size; i++) { startv[i] = startv[i-1] + nlengths[i-1];} 543e5d0e772SSatish Balay 544bc5ccf88SSatish Balay for (i=0,count=0; i<size; i++) { 545563fb871SSatish Balay if (nprocs[i]) { 546563fb871SSatish Balay ierr = MPI_Isend(sindices+2*startv[i],2*nlengths[i],MPIU_INT,i,tag1,comm,send_waits+count++);CHKERRQ(ierr); 547a77337e4SBarry Smith ierr = MPI_Isend(svalues+bs2*startv[i],bs2*nlengths[i],MPIU_SCALAR,i,tag2,comm,send_waits+count++);CHKERRQ(ierr); 548bc5ccf88SSatish Balay } 549b85c94c3SSatish Balay } 5506cf91177SBarry Smith #if defined(PETSC_USE_INFO) 5511e2582c4SBarry Smith ierr = PetscInfo1(mat,"No of messages: %d \n",nsends);CHKERRQ(ierr); 552e5d0e772SSatish Balay for (i=0; i<size; i++) { 553e5d0e772SSatish Balay if (nprocs[i]) { 554a77337e4SBarry Smith ierr = PetscInfo2(mat,"Mesg_to: %d: size: %d \n",i,nlengths[i]*bs2*sizeof(PetscScalar)+2*sizeof(PetscInt));CHKERRQ(ierr); 555e5d0e772SSatish Balay } 556e5d0e772SSatish Balay } 557e5d0e772SSatish Balay #endif 558*c05d87d6SBarry Smith ierr = PetscFree(nlengths);CHKERRQ(ierr); 559606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 560*c05d87d6SBarry Smith ierr = PetscFree2(startv,starti);CHKERRQ(ierr); 561*c05d87d6SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 562a2d1c673SSatish Balay 563563fb871SSatish Balay /* recv_waits need to be contiguous for MatStashScatterGetMesg_Private() */ 564563fb871SSatish Balay ierr = PetscMalloc((nreceives+1)*2*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 565563fb871SSatish Balay 566563fb871SSatish Balay for (i=0; i<nreceives; i++) { 567563fb871SSatish Balay recv_waits[2*i] = recv_waits1[i]; 568563fb871SSatish Balay recv_waits[2*i+1] = recv_waits2[i]; 569563fb871SSatish Balay } 570563fb871SSatish Balay stash->recv_waits = recv_waits; 571563fb871SSatish Balay ierr = PetscFree(recv_waits1);CHKERRQ(ierr); 572563fb871SSatish Balay ierr = PetscFree(recv_waits2);CHKERRQ(ierr); 573563fb871SSatish Balay 574*c05d87d6SBarry Smith stash->svalues = svalues; 575*c05d87d6SBarry Smith stash->sindices = sindices; 576*c05d87d6SBarry Smith stash->rvalues = rvalues; 577*c05d87d6SBarry Smith stash->rindices = rindices; 578*c05d87d6SBarry Smith stash->send_waits = send_waits; 579*c05d87d6SBarry Smith stash->nsends = nsends; 580*c05d87d6SBarry Smith stash->nrecvs = nreceives; 581bc5ccf88SSatish Balay PetscFunctionReturn(0); 582bc5ccf88SSatish Balay } 583bc5ccf88SSatish Balay 584a2d1c673SSatish Balay /* 5858798bf22SSatish Balay MatStashScatterGetMesg_Private - This function waits on the receives posted 5868798bf22SSatish Balay in the function MatStashScatterBegin_Private() and returns one message at 5874c1ff481SSatish Balay a time to the calling function. If no messages are left, it indicates this 5884c1ff481SSatish Balay by setting flg = 0, else it sets flg = 1. 5894c1ff481SSatish Balay 5904c1ff481SSatish Balay Input Parameters: 5914c1ff481SSatish Balay stash - the stash 5924c1ff481SSatish Balay 5934c1ff481SSatish Balay Output Parameters: 5944c1ff481SSatish Balay nvals - the number of entries in the current message. 5954c1ff481SSatish Balay rows - an array of row indices (or blocked indices) corresponding to the values 5964c1ff481SSatish Balay cols - an array of columnindices (or blocked indices) corresponding to the values 5974c1ff481SSatish Balay vals - the values 5984c1ff481SSatish Balay flg - 0 indicates no more message left, and the current call has no values associated. 5994c1ff481SSatish Balay 1 indicates that the current call successfully received a message, and the 6004c1ff481SSatish Balay other output parameters nvals,rows,cols,vals are set appropriately. 601a2d1c673SSatish Balay */ 6024a2ae208SSatish Balay #undef __FUNCT__ 6034a2ae208SSatish Balay #define __FUNCT__ "MatStashScatterGetMesg_Private" 60454f21887SBarry Smith PetscErrorCode MatStashScatterGetMesg_Private(MatStash *stash,PetscMPIInt *nvals,PetscInt **rows,PetscInt** cols,PetscScalar **vals,PetscInt *flg) 605bc5ccf88SSatish Balay { 6066849ba73SBarry Smith PetscErrorCode ierr; 607*c05d87d6SBarry Smith PetscMPIInt i,*flg_v,i1,i2,size; 608fe09c992SBarry Smith PetscInt bs2; 609a2d1c673SSatish Balay MPI_Status recv_status; 610b0a32e0cSBarry Smith PetscTruth match_found = PETSC_FALSE; 611bc5ccf88SSatish Balay 612bc5ccf88SSatish Balay PetscFunctionBegin; 613bc5ccf88SSatish Balay 614a2d1c673SSatish Balay *flg = 0; /* When a message is discovered this is reset to 1 */ 615a2d1c673SSatish Balay /* Return if no more messages to process */ 616a2d1c673SSatish Balay if (stash->nprocessed == stash->nrecvs) { PetscFunctionReturn(0); } 617a2d1c673SSatish Balay 618*c05d87d6SBarry Smith ierr = MPI_Comm_size(stash->comm,&stash->size);CHKERRQ(ierr); 619*c05d87d6SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&flg_v);CHKERRQ(ierr); 620*c05d87d6SBarry Smith for (i=0; i<2*size; i++) flg_v[i] = -1; 621*c05d87d6SBarry Smith 6224c1ff481SSatish Balay bs2 = stash->bs*stash->bs; 623a2d1c673SSatish Balay /* If a matching pair of receieves are found, process them, and return the data to 624a2d1c673SSatish Balay the calling function. Until then keep receiving messages */ 625a2d1c673SSatish Balay while (!match_found) { 626a2d1c673SSatish Balay ierr = MPI_Waitany(2*stash->nrecvs,stash->recv_waits,&i,&recv_status);CHKERRQ(ierr); 627a2d1c673SSatish Balay /* Now pack the received message into a structure which is useable by others */ 628a2d1c673SSatish Balay if (i % 2) { 629a77337e4SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,nvals);CHKERRQ(ierr); 630c1dc657dSBarry Smith flg_v[2*recv_status.MPI_SOURCE] = i/2; 631a2d1c673SSatish Balay *nvals = *nvals/bs2; 632563fb871SSatish Balay } else { 633563fb871SSatish Balay ierr = MPI_Get_count(&recv_status,MPIU_INT,nvals);CHKERRQ(ierr); 634563fb871SSatish Balay flg_v[2*recv_status.MPI_SOURCE+1] = i/2; 635563fb871SSatish Balay *nvals = *nvals/2; /* This message has both row indices and col indices */ 636bc5ccf88SSatish Balay } 637a2d1c673SSatish Balay 638cb2b73ccSBarry Smith /* Check if we have both messages from this proc */ 639c1dc657dSBarry Smith i1 = flg_v[2*recv_status.MPI_SOURCE]; 640c1dc657dSBarry Smith i2 = flg_v[2*recv_status.MPI_SOURCE+1]; 641a2d1c673SSatish Balay if (i1 != -1 && i2 != -1) { 642563fb871SSatish Balay *rows = stash->rindices[i2]; 643a2d1c673SSatish Balay *cols = *rows + *nvals; 644563fb871SSatish Balay *vals = stash->rvalues[i1]; 645a2d1c673SSatish Balay *flg = 1; 646a2d1c673SSatish Balay stash->nprocessed ++; 64735d8aa7fSBarry Smith match_found = PETSC_TRUE; 648bc5ccf88SSatish Balay } 649bc5ccf88SSatish Balay } 650*c05d87d6SBarry Smith ierr = PetscFree(flg_v);CHKERRQ(ierr); 651bc5ccf88SSatish Balay PetscFunctionReturn(0); 652bc5ccf88SSatish Balay } 653