xref: /petsc/src/snes/interface/noise/snesmfj2.c (revision 6849ba73f22fecb8f92ef896a42e4e8bd4cd6965)
1d2dddef7SLois Curfman McInnes 
20a835dfdSSatish Balay #include "src/snes/snesimpl.h"   /*I  "petscsnes.h"   I*/
3d2dddef7SLois Curfman McInnes 
4dfbe8321SBarry Smith EXTERN PetscErrorCode DiffParameterCreate_More(SNES,Vec,void**);
5dfbe8321SBarry Smith EXTERN PetscErrorCode DiffParameterCompute_More(SNES,void*,Vec,Vec,PetscReal*,PetscReal*);
6dfbe8321SBarry Smith EXTERN PetscErrorCode DiffParameterDestroy_More(void*);
7d2dddef7SLois Curfman McInnes 
8d2dddef7SLois Curfman McInnes typedef struct {  /* default context for matrix-free SNES */
9d2dddef7SLois Curfman McInnes   SNES         snes;             /* SNES context */
10d2dddef7SLois Curfman McInnes   Vec          w;                /* work vector */
1174637425SBarry Smith   MatNullSpace sp;               /* null space context */
12145595abSSatish Balay   PetscReal    error_rel;        /* square root of relative error in computing function */
13145595abSSatish Balay   PetscReal    umin;             /* minimum allowable u'a value relative to |u|_1 */
14d2dddef7SLois Curfman McInnes   int          jorge;            /* flag indicating use of Jorge's method for determining
15d2dddef7SLois Curfman McInnes                                    the differencing parameter */
16145595abSSatish Balay   PetscReal    h;                /* differencing parameter */
17d2dddef7SLois Curfman McInnes   int          need_h;           /* flag indicating whether we must compute h */
18295f7fbbSLois Curfman McInnes   int          need_err;         /* flag indicating whether we must currently compute error_rel */
19295f7fbbSLois Curfman McInnes   int          compute_err;      /* flag indicating whether we must ever compute error_rel */
20295f7fbbSLois Curfman McInnes   int          compute_err_iter; /* last iter where we've computer error_rel */
21295f7fbbSLois Curfman McInnes   int          compute_err_freq; /* frequency of computing error_rel */
22d2dddef7SLois Curfman McInnes   void         *data;            /* implementation-specific data */
23d2dddef7SLois Curfman McInnes } MFCtx_Private;
24d2dddef7SLois Curfman McInnes 
254a2ae208SSatish Balay #undef __FUNCT__
264a2ae208SSatish Balay #define __FUNCT__ "SNESMatrixFreeDestroy2_Private" /* ADIC Ignore */
27dfbe8321SBarry Smith PetscErrorCode SNESMatrixFreeDestroy2_Private(Mat mat)
28d2dddef7SLois Curfman McInnes {
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30d2dddef7SLois Curfman McInnes   MFCtx_Private *ctx;
31d2dddef7SLois Curfman McInnes 
3207a3eed9SLois Curfman McInnes   PetscFunctionBegin;
33d2dddef7SLois Curfman McInnes   ierr = MatShellGetContext(mat,(void **)&ctx);
34d2dddef7SLois Curfman McInnes   ierr = VecDestroy(ctx->w);CHKERRQ(ierr);
3574637425SBarry Smith   if (ctx->sp) {ierr = MatNullSpaceDestroy(ctx->sp);CHKERRQ(ierr);}
36295f7fbbSLois Curfman McInnes   if (ctx->jorge || ctx->compute_err) {ierr = DiffParameterDestroy_More(ctx->data);CHKERRQ(ierr);}
37606d414cSSatish Balay   ierr = PetscFree(ctx);CHKERRQ(ierr);
3807a3eed9SLois Curfman McInnes   PetscFunctionReturn(0);
39d2dddef7SLois Curfman McInnes }
40d2dddef7SLois Curfman McInnes 
414a2ae208SSatish Balay #undef __FUNCT__
424a2ae208SSatish Balay #define __FUNCT__ "SNESMatrixFreeView2_Private" /* ADIC Ignore */
43d2dddef7SLois Curfman McInnes /*
44d2dddef7SLois Curfman McInnes    SNESMatrixFreeView2_Private - Views matrix-free parameters.
45d2dddef7SLois Curfman McInnes  */
46dfbe8321SBarry Smith PetscErrorCode SNESMatrixFreeView2_Private(Mat J,PetscViewer viewer)
47d2dddef7SLois Curfman McInnes {
48dfbe8321SBarry Smith   PetscErrorCode ierr;
49d2dddef7SLois Curfman McInnes   MFCtx_Private *ctx;
5032077d6dSBarry Smith   PetscTruth    iascii;
51d2dddef7SLois Curfman McInnes 
5207a3eed9SLois Curfman McInnes   PetscFunctionBegin;
53d2dddef7SLois Curfman McInnes   ierr = MatShellGetContext(J,(void **)&ctx);CHKERRQ(ierr);
5432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
5532077d6dSBarry Smith   if (iascii) {
56b0a32e0cSBarry Smith      ierr = PetscViewerASCIIPrintf(viewer,"  SNES matrix-free approximation:\n");CHKERRQ(ierr);
57758f395bSBarry Smith      if (ctx->jorge) {
58b0a32e0cSBarry Smith        ierr = PetscViewerASCIIPrintf(viewer,"    using Jorge's method of determining differencing parameter\n");CHKERRQ(ierr);
59758f395bSBarry Smith      }
60b0a32e0cSBarry Smith      ierr = PetscViewerASCIIPrintf(viewer,"    err=%g (relative error in function evaluation)\n",ctx->error_rel);CHKERRQ(ierr);
61b0a32e0cSBarry Smith      ierr = PetscViewerASCIIPrintf(viewer,"    umin=%g (minimum iterate parameter)\n",ctx->umin);CHKERRQ(ierr);
62758f395bSBarry Smith      if (ctx->compute_err) {
63b0a32e0cSBarry Smith        ierr = PetscViewerASCIIPrintf(viewer,"    freq_err=%d (frequency for computing err)\n",ctx->compute_err_freq);CHKERRQ(ierr);
64d2dddef7SLois Curfman McInnes      }
65758f395bSBarry Smith   } else {
6629bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by SNES matrix free Jorge",((PetscObject)viewer)->type_name);
67758f395bSBarry Smith   }
6807a3eed9SLois Curfman McInnes   PetscFunctionReturn(0);
69d2dddef7SLois Curfman McInnes }
70d2dddef7SLois Curfman McInnes 
714a2ae208SSatish Balay #undef __FUNCT__
724a2ae208SSatish Balay #define __FUNCT__ "SNESMatrixFreeMult2_Private"
73d2dddef7SLois Curfman McInnes /*
74d2dddef7SLois Curfman McInnes   SNESMatrixFreeMult2_Private - Default matrix-free form for Jacobian-vector
75d2dddef7SLois Curfman McInnes   product, y = F'(u)*a:
76d2dddef7SLois Curfman McInnes         y = (F(u + ha) - F(u)) /h,
77d2dddef7SLois Curfman McInnes   where F = nonlinear function, as set by SNESSetFunction()
78d2dddef7SLois Curfman McInnes         u = current iterate
79d2dddef7SLois Curfman McInnes         h = difference interval
80d2dddef7SLois Curfman McInnes */
81dfbe8321SBarry Smith PetscErrorCode SNESMatrixFreeMult2_Private(Mat mat,Vec a,Vec y)
82d2dddef7SLois Curfman McInnes {
83d2dddef7SLois Curfman McInnes   MFCtx_Private *ctx;
84d2dddef7SLois Curfman McInnes   SNES          snes;
85145595abSSatish Balay   PetscReal     h,norm,sum,umin,noise;
86ea709b57SSatish Balay   PetscScalar   hs,dot,mone = -1.0;
87d2dddef7SLois Curfman McInnes   Vec           w,U,F;
88dfbe8321SBarry Smith   PetscErrorCode ierr,(*eval_fct)(SNES,Vec,Vec);
89e6ed2b1fSLois Curfman McInnes   MPI_Comm      comm;
90dfbe8321SBarry Smith   int           iter;
91d2dddef7SLois Curfman McInnes 
9207a3eed9SLois Curfman McInnes   PetscFunctionBegin;
9307a3eed9SLois Curfman McInnes 
94d2dddef7SLois Curfman McInnes   /* We log matrix-free matrix-vector products separately, so that we can
95d2dddef7SLois Curfman McInnes      separate the performance monitoring from the cases that use conventional
96d2dddef7SLois Curfman McInnes      storage.  We may eventually modify event logging to associate events
97d2dddef7SLois Curfman McInnes      with particular objects, hence alleviating the more general problem. */
9852ed857cSBarry Smith   ierr = PetscLogEventBegin(MAT_MultMatrixFree,a,y,0,0);CHKERRQ(ierr);
99d2dddef7SLois Curfman McInnes 
1002d0c0e3bSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
101e6ed2b1fSLois Curfman McInnes   ierr = MatShellGetContext(mat,(void **)&ctx);CHKERRQ(ierr);
102e6ed2b1fSLois Curfman McInnes   snes = ctx->snes;
103e6ed2b1fSLois Curfman McInnes   w    = ctx->w;
104e6ed2b1fSLois Curfman McInnes   umin = ctx->umin;
105e6ed2b1fSLois Curfman McInnes 
106d2dddef7SLois Curfman McInnes   ierr = SNESGetSolution(snes,&U);CHKERRQ(ierr);
107d2dddef7SLois Curfman McInnes   eval_fct = SNESComputeFunction;
10874637425SBarry Smith   ierr = SNESGetFunction(snes,&F,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr);
109295f7fbbSLois Curfman McInnes 
110d2dddef7SLois Curfman McInnes   /* Determine a "good" step size, h */
111d2dddef7SLois Curfman McInnes   if (ctx->need_h) {
112d2dddef7SLois Curfman McInnes 
113d2dddef7SLois Curfman McInnes     /* Use Jorge's method to compute h */
114d2dddef7SLois Curfman McInnes     if (ctx->jorge) {
115d2dddef7SLois Curfman McInnes       ierr = DiffParameterCompute_More(snes,ctx->data,U,a,&noise,&h);CHKERRQ(ierr);
116d2dddef7SLois Curfman McInnes 
117d2dddef7SLois Curfman McInnes     /* Use the Brown/Saad method to compute h */
118d2dddef7SLois Curfman McInnes     } else {
119295f7fbbSLois Curfman McInnes       /* Compute error if desired */
120295f7fbbSLois Curfman McInnes       ierr = SNESGetIterationNumber(snes,&iter);CHKERRQ(ierr);
121145595abSSatish Balay       if ((ctx->need_err) || ((ctx->compute_err_freq) && (ctx->compute_err_iter != iter) && (!((iter-1)%ctx->compute_err_freq)))) {
122d2dddef7SLois Curfman McInnes         /* Use Jorge's method to compute noise */
123d2dddef7SLois Curfman McInnes         ierr = DiffParameterCompute_More(snes,ctx->data,U,a,&noise,&h);CHKERRQ(ierr);
124d2dddef7SLois Curfman McInnes         ctx->error_rel = sqrt(noise);
125b0a32e0cSBarry Smith         PetscLogInfo(snes,"SNESMatrixFreeMult2_Private: Using Jorge's noise: noise=%g, sqrt(noise)=%g, h_more=%g\n",noise,ctx->error_rel,h);
126295f7fbbSLois Curfman McInnes         ctx->compute_err_iter = iter;
127d2dddef7SLois Curfman McInnes         ctx->need_err = 0;
128d2dddef7SLois Curfman McInnes       }
129e6ed2b1fSLois Curfman McInnes 
130691598edSBarry Smith       ierr = VecDotBegin(U,a,&dot);CHKERRQ(ierr);
131691598edSBarry Smith       ierr = VecNormBegin(a,NORM_1,&sum);CHKERRQ(ierr);
132691598edSBarry Smith       ierr = VecNormBegin(a,NORM_2,&norm);CHKERRQ(ierr);
133691598edSBarry Smith       ierr = VecDotEnd(U,a,&dot);CHKERRQ(ierr);
134691598edSBarry Smith       ierr = VecNormEnd(a,NORM_1,&sum);CHKERRQ(ierr);
135691598edSBarry Smith       ierr = VecNormEnd(a,NORM_2,&norm);CHKERRQ(ierr);
136e6ed2b1fSLois Curfman McInnes 
137d2dddef7SLois Curfman McInnes 
138d2dddef7SLois Curfman McInnes       /* Safeguard for step sizes too small */
139d2dddef7SLois Curfman McInnes       if (sum == 0.0) {dot = 1.0; norm = 1.0;}
140aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
141145595abSSatish Balay       else if (PetscAbsScalar(dot) < umin*sum && PetscRealPart(dot) >= 0.0) dot = umin*sum;
142145595abSSatish Balay       else if (PetscAbsScalar(dot) < 0.0 && PetscRealPart(dot) > -umin*sum) dot = -umin*sum;
143d2dddef7SLois Curfman McInnes #else
144d2dddef7SLois Curfman McInnes       else if (dot < umin*sum && dot >= 0.0) dot = umin*sum;
145d2dddef7SLois Curfman McInnes       else if (dot < 0.0 && dot > -umin*sum) dot = -umin*sum;
146d2dddef7SLois Curfman McInnes #endif
147145595abSSatish Balay       h = PetscRealPart(ctx->error_rel*dot/(norm*norm));
148d2dddef7SLois Curfman McInnes     }
149d2dddef7SLois Curfman McInnes   } else {
150d2dddef7SLois Curfman McInnes     h = ctx->h;
151d2dddef7SLois Curfman McInnes   }
152b0a32e0cSBarry Smith   if (!ctx->jorge || !ctx->need_h) PetscLogInfo(snes,"SNESMatrixFreeMult2_Private: h = %g\n",h);
153d2dddef7SLois Curfman McInnes 
154d2dddef7SLois Curfman McInnes   /* Evaluate function at F(u + ha) */
155db0b4b35SLois Curfman McInnes   hs = h;
156db0b4b35SLois Curfman McInnes   ierr = VecWAXPY(&hs,a,U,w);CHKERRQ(ierr);
157d2dddef7SLois Curfman McInnes   ierr = eval_fct(snes,w,y);CHKERRQ(ierr);
158d2dddef7SLois Curfman McInnes   ierr = VecAXPY(&mone,F,y);CHKERRQ(ierr);
159db0b4b35SLois Curfman McInnes   hs = 1.0/hs;
160db0b4b35SLois Curfman McInnes   ierr = VecScale(&hs,y);CHKERRQ(ierr);
16174637425SBarry Smith   if (ctx->sp) {ierr = MatNullSpaceRemove(ctx->sp,y,PETSC_NULL);CHKERRQ(ierr);}
162d2dddef7SLois Curfman McInnes 
16352ed857cSBarry Smith   ierr = PetscLogEventEnd(MAT_MultMatrixFree,a,y,0,0);CHKERRQ(ierr);
16407a3eed9SLois Curfman McInnes   PetscFunctionReturn(0);
165d2dddef7SLois Curfman McInnes }
166d2dddef7SLois Curfman McInnes 
1674a2ae208SSatish Balay #undef __FUNCT__
1684a2ae208SSatish Balay #define __FUNCT__ "SNESMatrixFreeMatCreate2"
169d2dddef7SLois Curfman McInnes /*@C
170d2dddef7SLois Curfman McInnes    SNESMatrixFreeMatCreate2 - Creates a matrix-free matrix
171d2dddef7SLois Curfman McInnes    context for use with a SNES solver.  This matrix can be used as
172d2dddef7SLois Curfman McInnes    the Jacobian argument for the routine SNESSetJacobian().
173d2dddef7SLois Curfman McInnes 
174d2dddef7SLois Curfman McInnes    Input Parameters:
175d2dddef7SLois Curfman McInnes .  snes - the SNES context
176d2dddef7SLois Curfman McInnes .  x - vector where SNES solution is to be stored.
177d2dddef7SLois Curfman McInnes 
178d2dddef7SLois Curfman McInnes    Output Parameter:
179d2dddef7SLois Curfman McInnes .  J - the matrix-free matrix
180d2dddef7SLois Curfman McInnes 
18190c26489SBarry Smith    Level: advanced
18290c26489SBarry Smith 
183d2dddef7SLois Curfman McInnes    Notes:
184d2dddef7SLois Curfman McInnes    The matrix-free matrix context merely contains the function pointers
185d2dddef7SLois Curfman McInnes    and work space for performing finite difference approximations of
186d2dddef7SLois Curfman McInnes    Jacobian-vector products, J(u)*a, via
187d2dddef7SLois Curfman McInnes 
188d2dddef7SLois Curfman McInnes $       J(u)*a = [J(u+h*a) - J(u)]/h,
189d2dddef7SLois Curfman McInnes $   where by default
190d2dddef7SLois Curfman McInnes $        h = error_rel*u'a/||a||^2                        if  |u'a| > umin*||a||_{1}
191d2dddef7SLois Curfman McInnes $          = error_rel*umin*sign(u'a)*||a||_{1}/||a||^2   otherwise
192d2dddef7SLois Curfman McInnes $   where
193d2dddef7SLois Curfman McInnes $        error_rel = square root of relative error in
194d2dddef7SLois Curfman McInnes $                    function evaluation
195d2dddef7SLois Curfman McInnes $        umin = minimum iterate parameter
196d2dddef7SLois Curfman McInnes $   Alternatively, the differencing parameter, h, can be set using
197e6ed2b1fSLois Curfman McInnes $   Jorge's nifty new strategy if one specifies the option
198e6ed2b1fSLois Curfman McInnes $          -snes_mf_jorge
199d2dddef7SLois Curfman McInnes 
2005a655dc6SBarry Smith    The user can set these parameters via MatSNESMFSetFunctionError().
201d2dddef7SLois Curfman McInnes    See the nonlinear solvers chapter of the users manual for details.
202d2dddef7SLois Curfman McInnes 
203d2dddef7SLois Curfman McInnes    The user should call MatDestroy() when finished with the matrix-free
204d2dddef7SLois Curfman McInnes    matrix context.
205d2dddef7SLois Curfman McInnes 
206d2dddef7SLois Curfman McInnes    Options Database Keys:
207d2dddef7SLois Curfman McInnes $  -snes_mf_err <error_rel>
208d2dddef7SLois Curfman McInnes $  -snes_mf_unim <umin>
209295f7fbbSLois Curfman McInnes $  -snes_mf_compute_err
210295f7fbbSLois Curfman McInnes $  -snes_mf_freq_err <freq>
211e6ed2b1fSLois Curfman McInnes $  -snes_mf_jorge
212d2dddef7SLois Curfman McInnes 
213d2dddef7SLois Curfman McInnes .keywords: SNES, default, matrix-free, create, matrix
214d2dddef7SLois Curfman McInnes 
2155a655dc6SBarry Smith .seealso: MatDestroy(), MatSNESMFSetFunctionError()
216d2dddef7SLois Curfman McInnes @*/
217dfbe8321SBarry Smith PetscErrorCode SNESDefaultMatrixFreeCreate2(SNES snes,Vec x,Mat *J)
218d2dddef7SLois Curfman McInnes {
219d2dddef7SLois Curfman McInnes   MPI_Comm      comm;
220d2dddef7SLois Curfman McInnes   MFCtx_Private *mfctx;
221*6849ba73SBarry Smith   PetscErrorCode ierr;
222*6849ba73SBarry Smith   int           n,nloc;
223145595abSSatish Balay   PetscTruth    flg;
224d2dddef7SLois Curfman McInnes   char          p[64];
225d2dddef7SLois Curfman McInnes 
22607a3eed9SLois Curfman McInnes   PetscFunctionBegin;
22782502324SSatish Balay   ierr = PetscNew(MFCtx_Private,&mfctx);CHKERRQ(ierr);
228549d3d68SSatish Balay   ierr  = PetscMemzero(mfctx,sizeof(MFCtx_Private));CHKERRQ(ierr);
229b0a32e0cSBarry Smith   PetscLogObjectMemory(snes,sizeof(MFCtx_Private));
230d2dddef7SLois Curfman McInnes   mfctx->sp   = 0;
231d2dddef7SLois Curfman McInnes   mfctx->snes = snes;
23277d8c4bbSBarry Smith   mfctx->error_rel        = PETSC_SQRT_MACHINE_EPSILON;
233d2dddef7SLois Curfman McInnes   mfctx->umin             = 1.e-6;
234d2dddef7SLois Curfman McInnes   mfctx->h                = 0.0;
235d2dddef7SLois Curfman McInnes   mfctx->need_h           = 1;
236d2dddef7SLois Curfman McInnes   mfctx->need_err         = 0;
237295f7fbbSLois Curfman McInnes   mfctx->compute_err      = 0;
238295f7fbbSLois Curfman McInnes   mfctx->compute_err_freq = 0;
239295f7fbbSLois Curfman McInnes   mfctx->compute_err_iter = -1;
24087828ca2SBarry Smith   ierr = PetscOptionsGetReal(snes->prefix,"-snes_mf_err",&mfctx->error_rel,PETSC_NULL);CHKERRQ(ierr);
24187828ca2SBarry Smith   ierr = PetscOptionsGetReal(snes->prefix,"-snes_mf_umin",&mfctx->umin,PETSC_NULL);CHKERRQ(ierr);
24252ed857cSBarry Smith   ierr = PetscOptionsHasName(snes->prefix,"-snes_mf_jorge",(PetscTruth*)&mfctx->jorge);CHKERRQ(ierr);
24352ed857cSBarry Smith   ierr = PetscOptionsHasName(snes->prefix,"-snes_mf_compute_err",(PetscTruth*)&mfctx->compute_err);CHKERRQ(ierr);
244b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(snes->prefix,"-snes_mf_freq_err",&mfctx->compute_err_freq,&flg);CHKERRQ(ierr);
245295f7fbbSLois Curfman McInnes   if (flg) {
246295f7fbbSLois Curfman McInnes     if (mfctx->compute_err_freq < 0) mfctx->compute_err_freq = 0;
247295f7fbbSLois Curfman McInnes     mfctx->compute_err = 1;
248295f7fbbSLois Curfman McInnes   }
249295f7fbbSLois Curfman McInnes   if (mfctx->compute_err == 1) mfctx->need_err = 1;
250295f7fbbSLois Curfman McInnes   if (mfctx->jorge || mfctx->compute_err) {
251d2dddef7SLois Curfman McInnes     ierr = DiffParameterCreate_More(snes,x,&mfctx->data);CHKERRQ(ierr);
252d2dddef7SLois Curfman McInnes   } else mfctx->data = 0;
253d2dddef7SLois Curfman McInnes 
254b0a32e0cSBarry Smith   ierr = PetscOptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr);
255549d3d68SSatish Balay   ierr = PetscStrcpy(p,"-");CHKERRQ(ierr);
256d2dddef7SLois Curfman McInnes   if (snes->prefix) PetscStrcat(p,snes->prefix);
257d2dddef7SLois Curfman McInnes   if (flg) {
258d132466eSBarry Smith     ierr = PetscPrintf(snes->comm," Matrix-free Options (via SNES):\n");CHKERRQ(ierr);
259d132466eSBarry Smith     ierr = PetscPrintf(snes->comm,"   %ssnes_mf_err <err>: set sqrt of relative error in function (default %g)\n",p,mfctx->error_rel);CHKERRQ(ierr);
260d132466eSBarry Smith     ierr = PetscPrintf(snes->comm,"   %ssnes_mf_umin <umin>: see users manual (default %g)\n",p,mfctx->umin);CHKERRQ(ierr);
261d132466eSBarry Smith     ierr = PetscPrintf(snes->comm,"   %ssnes_mf_jorge: use Jorge More's method\n",p);CHKERRQ(ierr);
262d132466eSBarry Smith     ierr = PetscPrintf(snes->comm,"   %ssnes_mf_compute_err: compute sqrt or relative error in function\n",p);CHKERRQ(ierr);
263d132466eSBarry Smith     ierr = PetscPrintf(snes->comm,"   %ssnes_mf_freq_err <freq>: frequency to recompute this (default only once)\n",p);CHKERRQ(ierr);
264d132466eSBarry Smith     ierr = PetscPrintf(snes->comm,"   %ssnes_mf_noise_file <file>: set file for printing noise info\n",p);CHKERRQ(ierr);
265d2dddef7SLois Curfman McInnes   }
266d2dddef7SLois Curfman McInnes   ierr = VecDuplicate(x,&mfctx->w);CHKERRQ(ierr);
267d2dddef7SLois Curfman McInnes   ierr = PetscObjectGetComm((PetscObject)x,&comm);CHKERRQ(ierr);
268d2dddef7SLois Curfman McInnes   ierr = VecGetSize(x,&n);CHKERRQ(ierr);
269d2dddef7SLois Curfman McInnes   ierr = VecGetLocalSize(x,&nloc);CHKERRQ(ierr);
270f204ca49SKris Buschelman   ierr = MatCreate(comm,nloc,n,n,n,J);CHKERRQ(ierr);
271f204ca49SKris Buschelman   ierr = MatSetType(*J,MATSHELL);CHKERRQ(ierr);
272f204ca49SKris Buschelman   ierr = MatShellSetContext(*J,mfctx);CHKERRQ(ierr);
273c134de8dSSatish Balay   ierr = MatShellSetOperation(*J,MATOP_MULT,(void(*)(void))SNESMatrixFreeMult2_Private);CHKERRQ(ierr);
274c134de8dSSatish Balay   ierr = MatShellSetOperation(*J,MATOP_DESTROY,(void(*)(void))SNESMatrixFreeDestroy2_Private);CHKERRQ(ierr);
275c134de8dSSatish Balay   ierr = MatShellSetOperation(*J,MATOP_VIEW,(void(*)(void))SNESMatrixFreeView2_Private);CHKERRQ(ierr);
276d2dddef7SLois Curfman McInnes 
277b0a32e0cSBarry Smith   PetscLogObjectParent(*J,mfctx->w);
278b0a32e0cSBarry Smith   PetscLogObjectParent(snes,*J);
27907a3eed9SLois Curfman McInnes   PetscFunctionReturn(0);
280d2dddef7SLois Curfman McInnes }
281d2dddef7SLois Curfman McInnes 
2824a2ae208SSatish Balay #undef __FUNCT__
2834a2ae208SSatish Balay #define __FUNCT__ "SNESDefaultMatrixFreeSetParameters2"
28490c26489SBarry Smith /*@C
285758f395bSBarry Smith    SNESDefaultMatrixFreeSetParameters2 - Sets the parameters for the approximation of
286d2dddef7SLois Curfman McInnes    matrix-vector products using finite differences.
287d2dddef7SLois Curfman McInnes 
288d2dddef7SLois Curfman McInnes $       J(u)*a = [J(u+h*a) - J(u)]/h where
289d2dddef7SLois Curfman McInnes 
290d2dddef7SLois Curfman McInnes    either the user sets h directly here, or this parameter is computed via
291d2dddef7SLois Curfman McInnes 
292d2dddef7SLois Curfman McInnes $        h = error_rel*u'a/||a||^2                        if  |u'a| > umin*||a||_{1}
293d2dddef7SLois Curfman McInnes $          = error_rel*umin*sign(u'a)*||a||_{1}/||a||^2   else
294d2dddef7SLois Curfman McInnes $
295d2dddef7SLois Curfman McInnes 
296d2dddef7SLois Curfman McInnes    Input Parameters:
297758f395bSBarry Smith +  mat - the matrix
298d2dddef7SLois Curfman McInnes .  error_rel - relative error (should be set to the square root of
299d2dddef7SLois Curfman McInnes      the relative error in the function evaluations)
300d2dddef7SLois Curfman McInnes .  umin - minimum allowable u-value
301758f395bSBarry Smith -  h - differencing parameter
302d2dddef7SLois Curfman McInnes 
30390c26489SBarry Smith    Level: advanced
30490c26489SBarry Smith 
305d2dddef7SLois Curfman McInnes    Notes:
306d2dddef7SLois Curfman McInnes    If the user sets the parameter h directly, then this value will be used
307d2dddef7SLois Curfman McInnes    instead of the default computation indicated above.
308d2dddef7SLois Curfman McInnes 
309d2dddef7SLois Curfman McInnes .keywords: SNES, matrix-free, parameters
310d2dddef7SLois Curfman McInnes 
3115a655dc6SBarry Smith .seealso: MatCreateSNESMF()
312d2dddef7SLois Curfman McInnes @*/
313dfbe8321SBarry Smith PetscErrorCode SNESDefaultMatrixFreeSetParameters2(Mat mat,PetscReal error,PetscReal umin,PetscReal h)
314d2dddef7SLois Curfman McInnes {
315d2dddef7SLois Curfman McInnes   MFCtx_Private *ctx;
316dfbe8321SBarry Smith   PetscErrorCode ierr;
317d2dddef7SLois Curfman McInnes 
31807a3eed9SLois Curfman McInnes   PetscFunctionBegin;
319d2dddef7SLois Curfman McInnes   ierr = MatShellGetContext(mat,(void **)&ctx);CHKERRQ(ierr);
320d2dddef7SLois Curfman McInnes   if (ctx) {
321d2dddef7SLois Curfman McInnes     if (error != PETSC_DEFAULT) ctx->error_rel = error;
322d2dddef7SLois Curfman McInnes     if (umin  != PETSC_DEFAULT) ctx->umin = umin;
323d2dddef7SLois Curfman McInnes     if (h     != PETSC_DEFAULT) {
324d2dddef7SLois Curfman McInnes       ctx->h = h;
325d2dddef7SLois Curfman McInnes       ctx->need_h = 0;
326d2dddef7SLois Curfman McInnes     }
327d2dddef7SLois Curfman McInnes   }
32807a3eed9SLois Curfman McInnes   PetscFunctionReturn(0);
329d2dddef7SLois Curfman McInnes }
330d2dddef7SLois Curfman McInnes 
331dfbe8321SBarry Smith PetscErrorCode SNESUnSetMatrixFreeParameter(SNES snes)
332d2dddef7SLois Curfman McInnes {
333d2dddef7SLois Curfman McInnes   MFCtx_Private *ctx;
334dfbe8321SBarry Smith   PetscErrorCode ierr;
335d2dddef7SLois Curfman McInnes   Mat           mat;
336d2dddef7SLois Curfman McInnes 
33707a3eed9SLois Curfman McInnes   PetscFunctionBegin;
33874637425SBarry Smith   ierr = SNESGetJacobian(snes,&mat,PETSC_NULL,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr);
339d2dddef7SLois Curfman McInnes   ierr = MatShellGetContext(mat,(void **)&ctx);CHKERRQ(ierr);
340d2dddef7SLois Curfman McInnes   if (ctx) ctx->need_h = 1;
34107a3eed9SLois Curfman McInnes   PetscFunctionReturn(0);
342d2dddef7SLois Curfman McInnes }
343d2dddef7SLois Curfman McInnes 
344