163dd3a1aSKris Buschelman #define PETSCSNES_DLL 281e6777dSBarry Smith 37e9d5209SBarry Smith #include "src/mat/matimpl.h" 4325e03aeSBarry Smith #include "src/snes/mf/snesmfj.h" /*I "petscsnes.h" I*/ 581e6777dSBarry Smith 6b0a32e0cSBarry Smith PetscFList MatSNESMPetscFList = 0; 74c49b128SBarry Smith PetscTruth MatSNESMFRegisterAllCalled = PETSC_FALSE; 8a4d4d686SBarry Smith 963dd3a1aSKris Buschelman PetscCookie PETSCSNES_DLLEXPORT MATSNESMFCTX_COOKIE = 0; 1046129b97SKris Buschelman PetscEvent MATSNESMF_Mult = 0; 1146129b97SKris Buschelman 124a2ae208SSatish Balay #undef __FUNCT__ 134a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetType" 14fd4bdd07SBarry Smith /*@C 1565f2ba5bSLois Curfman McInnes MatSNESMFSetType - Sets the method that is used to compute the 16b0a32e0cSBarry Smith differencing parameter for finite differene matrix-free formulations. 179a6cb015SBarry Smith 189a6cb015SBarry Smith Input Parameters: 197e9d5209SBarry Smith + mat - the "matrix-free" matrix created via MatCreateSNESMF(), or MatCreateMF() 207e9d5209SBarry Smith or MatSetType(mat,MATMFFD); 21efb30889SBarry Smith - ftype - the type requested, either MATSNESMF_WP or MATSNESMF_DS 229a6cb015SBarry Smith 2315091d37SBarry Smith Level: advanced 2415091d37SBarry Smith 2565f2ba5bSLois Curfman McInnes Notes: 2665f2ba5bSLois Curfman McInnes For example, such routines can compute h for use in 2765f2ba5bSLois Curfman McInnes Jacobian-vector products of the form 2865f2ba5bSLois Curfman McInnes 2965f2ba5bSLois Curfman McInnes F(x+ha) - F(x) 30ef4ad1fdSLois Curfman McInnes F'(u)a ~= ---------------- 3165f2ba5bSLois Curfman McInnes h 3265f2ba5bSLois Curfman McInnes 33f1af5d2fSBarry Smith .seealso: MatCreateSNESMF(), MatSNESMFRegisterDynamic) 349a6cb015SBarry Smith @*/ 3563dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetType(Mat mat,const MatSNESMFType ftype) 36b9fa9cd0SBarry Smith { 37dfbe8321SBarry Smith PetscErrorCode ierr,(*r)(MatSNESMFCtx); 387e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 396831982aSBarry Smith PetscTruth match; 40a4d4d686SBarry Smith 41a4d4d686SBarry Smith PetscFunctionBegin; 424482741eSBarry Smith PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 434482741eSBarry Smith PetscValidCharPointer(ftype,2); 440f5bd95cSBarry Smith 459a6cb015SBarry Smith /* already set, so just return */ 466831982aSBarry Smith ierr = PetscTypeCompare((PetscObject)ctx,ftype,&match);CHKERRQ(ierr); 470f5bd95cSBarry Smith if (match) PetscFunctionReturn(0); 48a4d4d686SBarry Smith 499a6cb015SBarry Smith /* destroy the old one if it exists */ 509a6cb015SBarry Smith if (ctx->ops->destroy) { 519a6cb015SBarry Smith ierr = (*ctx->ops->destroy)(ctx);CHKERRQ(ierr); 529a6cb015SBarry Smith } 539a6cb015SBarry Smith 5465f2ba5bSLois Curfman McInnes /* Get the function pointers for the requrested method */ 555a655dc6SBarry Smith if (!MatSNESMFRegisterAllCalled) {ierr = MatSNESMFRegisterAll(PETSC_NULL);CHKERRQ(ierr);} 56b9617806SBarry Smith ierr = PetscFListFind(ctx->comm,MatSNESMPetscFList,ftype,(void (**)(void)) &r);CHKERRQ(ierr); 57958c9bccSBarry Smith if (!r) SETERRQ1(PETSC_ERR_ARG_UNKNOWN_TYPE,"Unknown MatSNESMF type %s given",ftype); 589a6cb015SBarry Smith ierr = (*r)(ctx);CHKERRQ(ierr); 596831982aSBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)ctx,ftype);CHKERRQ(ierr); 609a6cb015SBarry Smith PetscFunctionReturn(0); 619a6cb015SBarry Smith } 629a6cb015SBarry Smith 636849ba73SBarry Smith typedef PetscErrorCode (*FCN1)(Vec,void*); /* force argument to next function to not be extern C*/ 64c5c390f1SBarry Smith EXTERN_C_BEGIN 6587828ca2SBarry Smith #undef __FUNCT__ 6687828ca2SBarry Smith #define __FUNCT__ "MatSNESMFSetFunctioniBase_FD" 6763dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunctioniBase_FD(Mat mat,FCN1 func) 6887828ca2SBarry Smith { 6987828ca2SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 7087828ca2SBarry Smith 7187828ca2SBarry Smith PetscFunctionBegin; 7287828ca2SBarry Smith ctx->funcisetbase = func; 7387828ca2SBarry Smith PetscFunctionReturn(0); 7487828ca2SBarry Smith } 75c5c390f1SBarry Smith EXTERN_C_END 7687828ca2SBarry Smith 77a7cc72afSBarry Smith typedef PetscErrorCode (*FCN2)(PetscInt,Vec,PetscScalar*,void*); /* force argument to next function to not be extern C*/ 78c5c390f1SBarry Smith EXTERN_C_BEGIN 7987828ca2SBarry Smith #undef __FUNCT__ 8087828ca2SBarry Smith #define __FUNCT__ "MatSNESMFSetFunctioni_FD" 8163dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunctioni_FD(Mat mat,FCN2 funci) 8287828ca2SBarry Smith { 8387828ca2SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 8487828ca2SBarry Smith 8587828ca2SBarry Smith PetscFunctionBegin; 8687828ca2SBarry Smith ctx->funci = funci; 8787828ca2SBarry Smith PetscFunctionReturn(0); 8887828ca2SBarry Smith } 89c5c390f1SBarry Smith EXTERN_C_END 9087828ca2SBarry Smith 919a6cb015SBarry Smith 924a2ae208SSatish Balay #undef __FUNCT__ 934a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFRegister" 9463dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFRegister(const char sname[],const char path[],const char name[],PetscErrorCode (*function)(MatSNESMFCtx)) 959a6cb015SBarry Smith { 96dfbe8321SBarry Smith PetscErrorCode ierr; 97e2d1d2b7SBarry Smith char fullname[PETSC_MAX_PATH_LEN]; 989a6cb015SBarry Smith 999a6cb015SBarry Smith PetscFunctionBegin; 100b0a32e0cSBarry Smith ierr = PetscFListConcat(path,name,fullname);CHKERRQ(ierr); 101c134de8dSSatish Balay ierr = PetscFListAdd(&MatSNESMPetscFList,sname,fullname,(void (*)(void))function);CHKERRQ(ierr); 1029a6cb015SBarry Smith PetscFunctionReturn(0); 1039a6cb015SBarry Smith } 1049a6cb015SBarry Smith 1059a6cb015SBarry Smith 1064a2ae208SSatish Balay #undef __FUNCT__ 1074a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFRegisterDestroy" 1089a6cb015SBarry Smith /*@C 1095a655dc6SBarry Smith MatSNESMFRegisterDestroy - Frees the list of MatSNESMF methods that were 110f1af5d2fSBarry Smith registered by MatSNESMFRegisterDynamic). 1119a6cb015SBarry Smith 1129a6cb015SBarry Smith Not Collective 1139a6cb015SBarry Smith 11415091d37SBarry Smith Level: developer 11515091d37SBarry Smith 1165a655dc6SBarry Smith .keywords: MatSNESMF, register, destroy 1179a6cb015SBarry Smith 118f1af5d2fSBarry Smith .seealso: MatSNESMFRegisterDynamic), MatSNESMFRegisterAll() 1199a6cb015SBarry Smith @*/ 12063dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFRegisterDestroy(void) 1219a6cb015SBarry Smith { 122dfbe8321SBarry Smith PetscErrorCode ierr; 1239a6cb015SBarry Smith 1249a6cb015SBarry Smith PetscFunctionBegin; 125b0a32e0cSBarry Smith if (MatSNESMPetscFList) { 126b0a32e0cSBarry Smith ierr = PetscFListDestroy(&MatSNESMPetscFList);CHKERRQ(ierr); 127b0a32e0cSBarry Smith MatSNESMPetscFList = 0; 1289a6cb015SBarry Smith } 1294c49b128SBarry Smith MatSNESMFRegisterAllCalled = PETSC_FALSE; 1309a6cb015SBarry Smith PetscFunctionReturn(0); 1319a6cb015SBarry Smith } 1329a6cb015SBarry Smith 1339a6cb015SBarry Smith /* ----------------------------------------------------------------------------------------*/ 1344a2ae208SSatish Balay #undef __FUNCT__ 1358a124369SBarry Smith #define __FUNCT__ "MatDestroy_MFFD" 136dfbe8321SBarry Smith PetscErrorCode MatDestroy_MFFD(Mat mat) 137a4d4d686SBarry Smith { 138dfbe8321SBarry Smith PetscErrorCode ierr; 1397e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 140fae171e0SBarry Smith 1413a40ed3dSBarry Smith PetscFunctionBegin; 142abc0a331SBarry Smith if (ctx->w) { 143b9fa9cd0SBarry Smith ierr = VecDestroy(ctx->w);CHKERRQ(ierr); 144ba6a83e5SMatthew Knepley } 1459a6cb015SBarry Smith if (ctx->ops->destroy) {ierr = (*ctx->ops->destroy)(ctx);CHKERRQ(ierr);} 14674637425SBarry Smith if (ctx->sp) {ierr = MatNullSpaceDestroy(ctx->sp);CHKERRQ(ierr);} 147d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(ctx);CHKERRQ(ierr); 148901853e0SKris Buschelman 149901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSNESMFSetBase_C","",PETSC_NULL);CHKERRQ(ierr); 150901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSNESMFSetFunctioniBase_C","",PETSC_NULL);CHKERRQ(ierr); 151901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSNESMFSetFunctioni_C","",PETSC_NULL);CHKERRQ(ierr); 152901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSNESMFSetCheckh_C","",PETSC_NULL);CHKERRQ(ierr); 153901853e0SKris Buschelman 1543a40ed3dSBarry Smith PetscFunctionReturn(0); 155b9fa9cd0SBarry Smith } 15650361f65SLois Curfman McInnes 1574a2ae208SSatish Balay #undef __FUNCT__ 1588a124369SBarry Smith #define __FUNCT__ "MatView_MFFD" 15939e2f89bSBarry Smith /* 1608a124369SBarry Smith MatSNESMFView_MFFD - Views matrix-free parameters. 1618f6e3e37SBarry Smith 16239e2f89bSBarry Smith */ 163dfbe8321SBarry Smith PetscErrorCode MatView_MFFD(Mat J,PetscViewer viewer) 164eb9086c3SLois Curfman McInnes { 165dfbe8321SBarry Smith PetscErrorCode ierr; 1667e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 16732077d6dSBarry Smith PetscTruth iascii; 168eb9086c3SLois Curfman McInnes 1693a40ed3dSBarry Smith PetscFunctionBegin; 17032077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 17132077d6dSBarry Smith if (iascii) { 172b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," SNES matrix-free approximation:\n");CHKERRQ(ierr); 173a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," err=%G (relative error in function evaluation)\n",ctx->error_rel);CHKERRQ(ierr); 174473c83c3SBarry Smith if (!ctx->type_name) { 175b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," The compute h routine has not yet been set\n");CHKERRQ(ierr); 176473c83c3SBarry Smith } else { 177b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Using %s compute h routine\n",ctx->type_name);CHKERRQ(ierr); 178473c83c3SBarry Smith } 1799a6cb015SBarry Smith if (ctx->ops->view) { 1809a6cb015SBarry Smith ierr = (*ctx->ops->view)(ctx,viewer);CHKERRQ(ierr); 1819a6cb015SBarry Smith } 1825cd90555SBarry Smith } else { 18379a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported for SNES matrix free matrix",((PetscObject)viewer)->type_name); 184eb9086c3SLois Curfman McInnes } 1853a40ed3dSBarry Smith PetscFunctionReturn(0); 186eb9086c3SLois Curfman McInnes } 187eb9086c3SLois Curfman McInnes 1884a2ae208SSatish Balay #undef __FUNCT__ 1898a124369SBarry Smith #define __FUNCT__ "MatAssemblyEnd_MFFD" 190be726c96SBarry Smith /* 19132dfb669SBarry Smith MatAssemblyEnd_MFFD - Resets the ctx->ncurrenth to zero. This 19265f2ba5bSLois Curfman McInnes allows the user to indicate the beginning of a new linear solve by calling 193be726c96SBarry Smith MatAssemblyXXX() on the matrix free matrix. This then allows the 19465f2ba5bSLois Curfman McInnes MatSNESMFCreate_WP() to properly compute ||U|| only the first time 19565f2ba5bSLois Curfman McInnes in the linear solver rather than every time. 196be726c96SBarry Smith */ 197dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MFFD(Mat J,MatAssemblyType mt) 198be726c96SBarry Smith { 199dfbe8321SBarry Smith PetscErrorCode ierr; 2007e9d5209SBarry Smith MatSNESMFCtx j = (MatSNESMFCtx)J->data; 201be726c96SBarry Smith 202be726c96SBarry Smith PetscFunctionBegin; 2035a655dc6SBarry Smith ierr = MatSNESMFResetHHistory(J);CHKERRQ(ierr); 204b0a32e0cSBarry Smith if (j->usesnes) { 2051d1367b7SBarry Smith ierr = SNESGetSolution(j->snes,&j->current_u);CHKERRQ(ierr); 2061d1367b7SBarry Smith ierr = SNESGetFunction(j->snes,&j->current_f,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr); 207958c9bccSBarry Smith if (!j->w) { 2082740c1caSMatthew Knepley ierr = VecDuplicate(j->current_u, &j->w);CHKERRQ(ierr); 2092740c1caSMatthew Knepley } 2101d1367b7SBarry Smith } 211c5c390f1SBarry Smith j->vshift = 0.0; 212c5c390f1SBarry Smith j->vscale = 1.0; 213be726c96SBarry Smith PetscFunctionReturn(0); 214be726c96SBarry Smith } 215be726c96SBarry Smith 2164a2ae208SSatish Balay #undef __FUNCT__ 2178a124369SBarry Smith #define __FUNCT__ "MatMult_MFFD" 218eb9086c3SLois Curfman McInnes /* 219adb62b0dSMatthew Knepley MatMult_MFFD - Default matrix-free form for Jacobian-vector product, y = F'(u)*a: 220a4d4d686SBarry Smith 2219a6cb015SBarry Smith y ~= (F(u + ha) - F(u))/h, 222eb9086c3SLois Curfman McInnes where F = nonlinear function, as set by SNESSetFunction() 223eb9086c3SLois Curfman McInnes u = current iterate 224eb9086c3SLois Curfman McInnes h = difference interval 225eb9086c3SLois Curfman McInnes */ 226dfbe8321SBarry Smith PetscErrorCode MatMult_MFFD(Mat mat,Vec a,Vec y) 22739e2f89bSBarry Smith { 2287e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 229fae171e0SBarry Smith SNES snes; 230efb30889SBarry Smith PetscScalar h; 231fae171e0SBarry Smith Vec w,U,F; 232dfbe8321SBarry Smith PetscErrorCode ierr,(*eval_fct)(SNES,Vec,Vec)=0; 2334dc4c822SBarry Smith PetscTruth zeroa; 23439e2f89bSBarry Smith 2353a40ed3dSBarry Smith PetscFunctionBegin; 2369a6cb015SBarry Smith /* We log matrix-free matrix-vector products separately, so that we can 2379a6cb015SBarry Smith separate the performance monitoring from the cases that use conventional 2389a6cb015SBarry Smith storage. We may eventually modify event logging to associate events 2399a6cb015SBarry Smith with particular objects, hence alleviating the more general problem. */ 24046129b97SKris Buschelman ierr = PetscLogEventBegin(MATSNESMF_Mult,a,y,0,0);CHKERRQ(ierr); 24156cd22aeSBarry Smith 242fae171e0SBarry Smith snes = ctx->snes; 243fae171e0SBarry Smith w = ctx->w; 2441d1367b7SBarry Smith U = ctx->current_u; 24550361f65SLois Curfman McInnes 24685614651SBarry Smith /* 24785614651SBarry Smith Compute differencing parameter 24885614651SBarry Smith */ 2499a6cb015SBarry Smith if (!ctx->ops->compute) { 2502f859189SBarry Smith ierr = MatSNESMFSetType(mat,MATSNESMF_WP);CHKERRQ(ierr); 2515a655dc6SBarry Smith ierr = MatSNESMFSetFromOptions(mat);CHKERRQ(ierr); 2529a6cb015SBarry Smith } 2534dc4c822SBarry Smith ierr = (*ctx->ops->compute)(ctx,U,a,&h,&zeroa);CHKERRQ(ierr); 2544dc4c822SBarry Smith if (zeroa) { 25519bdad02SBarry Smith ierr = VecSet(y,0.0);CHKERRQ(ierr); 2564dc4c822SBarry Smith PetscFunctionReturn(0); 2574dc4c822SBarry Smith } 258a4d4d686SBarry Smith 2595b7f0c42SBarry Smith if (ctx->checkh) { 2605b7f0c42SBarry Smith ierr = (*ctx->checkh)(U,a,&h,ctx->checkhctx);CHKERRQ(ierr); 2615b7f0c42SBarry Smith } 2625b7f0c42SBarry Smith 263a4d4d686SBarry Smith /* keep a record of the current differencing parameter h */ 264a4d4d686SBarry Smith ctx->currenth = h; 265aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 266ae15b995SBarry Smith ierr = PetscInfo2(mat,"Current differencing parameter: %G + %G i\n",PetscRealPart(h),PetscImaginaryPart(h));CHKERRQ(ierr); 267a4d4d686SBarry Smith #else 268ae15b995SBarry Smith ierr = PetscInfo1(mat,"Current differencing parameter: %15.12e\n",h);CHKERRQ(ierr); 269a4d4d686SBarry Smith #endif 270a4d4d686SBarry Smith if (ctx->historyh && ctx->ncurrenth < ctx->maxcurrenth) { 27185614651SBarry Smith ctx->historyh[ctx->ncurrenth] = h; 272a4d4d686SBarry Smith } 27385614651SBarry Smith ctx->ncurrenth++; 274a4d4d686SBarry Smith 27585614651SBarry Smith /* w = u + ha */ 2762dcb1b2aSMatthew Knepley ierr = VecWAXPY(w,h,a,U);CHKERRQ(ierr); 27785614651SBarry Smith 278b0a32e0cSBarry Smith if (ctx->usesnes) { 27985614651SBarry Smith eval_fct = SNESComputeFunction; 2801d1367b7SBarry Smith F = ctx->current_f; 2811302d50aSBarry Smith if (!F) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"You must call MatAssembly() even on matrix-free matrices"); 28239903ad8SBarry Smith ierr = (*eval_fct)(snes,w,y);CHKERRQ(ierr); 28385614651SBarry Smith } else { 28485614651SBarry Smith F = ctx->funcvec; 28585614651SBarry Smith /* compute func(U) as base for differencing */ 28685614651SBarry Smith if (ctx->ncurrenth == 1) { 28785614651SBarry Smith ierr = (*ctx->func)(snes,U,F,ctx->funcctx);CHKERRQ(ierr); 28885614651SBarry Smith } 28985614651SBarry Smith ierr = (*ctx->func)(snes,w,y,ctx->funcctx);CHKERRQ(ierr); 29085614651SBarry Smith } 291a4d4d686SBarry Smith 292efb30889SBarry Smith ierr = VecAXPY(y,-1.0,F);CHKERRQ(ierr); 293efb30889SBarry Smith ierr = VecScale(y,1.0/h);CHKERRQ(ierr); 294c5c390f1SBarry Smith 2952dcb1b2aSMatthew Knepley ierr = VecAXPBY(y,ctx->vshift,ctx->vscale,a);CHKERRQ(ierr); 296c5c390f1SBarry Smith 29774637425SBarry Smith if (ctx->sp) {ierr = MatNullSpaceRemove(ctx->sp,y,PETSC_NULL);CHKERRQ(ierr);} 298a4d4d686SBarry Smith 29946129b97SKris Buschelman ierr = PetscLogEventEnd(MATSNESMF_Mult,a,y,0,0);CHKERRQ(ierr); 300a4d4d686SBarry Smith PetscFunctionReturn(0); 301a4d4d686SBarry Smith } 302a4d4d686SBarry Smith 3034a2ae208SSatish Balay #undef __FUNCT__ 3048a124369SBarry Smith #define __FUNCT__ "MatGetDiagonal_MFFD" 305cf57b110SBarry Smith /* 3068a124369SBarry Smith MatGetDiagonal_MFFD - Gets the diagonal for a matrix free matrix 307cf57b110SBarry Smith 308cf57b110SBarry Smith y ~= (F(u + ha) - F(u))/h, 309cf57b110SBarry Smith where F = nonlinear function, as set by SNESSetFunction() 310cf57b110SBarry Smith u = current iterate 311cf57b110SBarry Smith h = difference interval 312cf57b110SBarry Smith */ 313dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MFFD(Mat mat,Vec a) 314cf57b110SBarry Smith { 3157e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 316ea709b57SSatish Balay PetscScalar h,*aa,*ww,v; 31777d8c4bbSBarry Smith PetscReal epsilon = PETSC_SQRT_MACHINE_EPSILON,umin = 100.0*PETSC_SQRT_MACHINE_EPSILON; 31865df01d8SBarry Smith Vec w,U; 3196849ba73SBarry Smith PetscErrorCode ierr; 320a7cc72afSBarry Smith PetscInt i,rstart,rend; 321cf57b110SBarry Smith 322cf57b110SBarry Smith PetscFunctionBegin; 323cf57b110SBarry Smith if (!ctx->funci) { 3241302d50aSBarry Smith SETERRQ(PETSC_ERR_ORDER,"Requires calling MatSNESMFSetFunctioni() first"); 325cf57b110SBarry Smith } 326cf57b110SBarry Smith 327cf57b110SBarry Smith w = ctx->w; 328cf57b110SBarry Smith U = ctx->current_u; 329cf57b110SBarry Smith ierr = (*ctx->func)(0,U,a,ctx->funcctx);CHKERRQ(ierr); 330cf57b110SBarry Smith ierr = (*ctx->funcisetbase)(U,ctx->funcctx);CHKERRQ(ierr); 331cf57b110SBarry Smith ierr = VecCopy(U,w);CHKERRQ(ierr); 332cf57b110SBarry Smith 333cf57b110SBarry Smith ierr = VecGetOwnershipRange(a,&rstart,&rend);CHKERRQ(ierr); 334cf57b110SBarry Smith ierr = VecGetArray(a,&aa);CHKERRQ(ierr); 335cf57b110SBarry Smith for (i=rstart; i<rend; i++) { 336cf57b110SBarry Smith ierr = VecGetArray(w,&ww);CHKERRQ(ierr); 337cf57b110SBarry Smith h = ww[i-rstart]; 338cf57b110SBarry Smith if (h == 0.0) h = 1.0; 339cf57b110SBarry Smith #if !defined(PETSC_USE_COMPLEX) 340cf57b110SBarry Smith if (h < umin && h >= 0.0) h = umin; 341cf57b110SBarry Smith else if (h < 0.0 && h > -umin) h = -umin; 342cf57b110SBarry Smith #else 343cf57b110SBarry Smith if (PetscAbsScalar(h) < umin && PetscRealPart(h) >= 0.0) h = umin; 344cf57b110SBarry Smith else if (PetscRealPart(h) < 0.0 && PetscAbsScalar(h) < umin) h = -umin; 345cf57b110SBarry Smith #endif 346cf57b110SBarry Smith h *= epsilon; 347cf57b110SBarry Smith 348cf57b110SBarry Smith ww[i-rstart] += h; 349cf57b110SBarry Smith ierr = VecRestoreArray(w,&ww);CHKERRQ(ierr); 350cf57b110SBarry Smith ierr = (*ctx->funci)(i,w,&v,ctx->funcctx);CHKERRQ(ierr); 351cf57b110SBarry Smith aa[i-rstart] = (v - aa[i-rstart])/h; 352c5c390f1SBarry Smith 353c5c390f1SBarry Smith /* possibly shift and scale result */ 354c5c390f1SBarry Smith aa[i - rstart] = ctx->vshift + ctx->vscale*aa[i-rstart]; 355c5c390f1SBarry Smith 356cf57b110SBarry Smith ierr = VecGetArray(w,&ww);CHKERRQ(ierr); 357cf57b110SBarry Smith ww[i-rstart] -= h; 358cf57b110SBarry Smith ierr = VecRestoreArray(w,&ww);CHKERRQ(ierr); 359cf57b110SBarry Smith } 360cf57b110SBarry Smith ierr = VecRestoreArray(a,&aa);CHKERRQ(ierr); 361cf57b110SBarry Smith PetscFunctionReturn(0); 362cf57b110SBarry Smith } 363cf57b110SBarry Smith 364cf57b110SBarry Smith #undef __FUNCT__ 365c5c390f1SBarry Smith #define __FUNCT__ "MatShift_MFFD" 366f4df32b1SMatthew Knepley PetscErrorCode MatShift_MFFD(Mat Y,PetscScalar a) 367c5c390f1SBarry Smith { 368c5c390f1SBarry Smith MatSNESMFCtx shell = (MatSNESMFCtx)Y->data; 369c5c390f1SBarry Smith PetscFunctionBegin; 370f4df32b1SMatthew Knepley shell->vshift += a; 371c5c390f1SBarry Smith PetscFunctionReturn(0); 372c5c390f1SBarry Smith } 373c5c390f1SBarry Smith 374c5c390f1SBarry Smith #undef __FUNCT__ 375c5c390f1SBarry Smith #define __FUNCT__ "MatScale_MFFD" 376f4df32b1SMatthew Knepley PetscErrorCode MatScale_MFFD(Mat Y,PetscScalar a) 377c5c390f1SBarry Smith { 378c5c390f1SBarry Smith MatSNESMFCtx shell = (MatSNESMFCtx)Y->data; 379c5c390f1SBarry Smith PetscFunctionBegin; 380f4df32b1SMatthew Knepley shell->vscale *= a; 381c5c390f1SBarry Smith PetscFunctionReturn(0); 382c5c390f1SBarry Smith } 383c5c390f1SBarry Smith 384c5c390f1SBarry Smith 385c5c390f1SBarry Smith #undef __FUNCT__ 3864a2ae208SSatish Balay #define __FUNCT__ "MatCreateSNESMF" 38752baeb72SSatish Balay /*@ 38865f2ba5bSLois Curfman McInnes MatCreateSNESMF - Creates a matrix-free matrix context for use with 38965f2ba5bSLois Curfman McInnes a SNES solver. This matrix can be used as the Jacobian argument for 39065f2ba5bSLois Curfman McInnes the routine SNESSetJacobian(). 391a4d4d686SBarry Smith 392a4d4d686SBarry Smith Collective on SNES and Vec 393a4d4d686SBarry Smith 394a4d4d686SBarry Smith Input Parameters: 395a4d4d686SBarry Smith + snes - the SNES context 396a4d4d686SBarry Smith - x - vector where SNES solution is to be stored. 397a4d4d686SBarry Smith 398a4d4d686SBarry Smith Output Parameter: 399a4d4d686SBarry Smith . J - the matrix-free matrix 400a4d4d686SBarry Smith 40115091d37SBarry Smith Level: advanced 40215091d37SBarry Smith 403a4d4d686SBarry Smith Notes: 404a4d4d686SBarry Smith The matrix-free matrix context merely contains the function pointers 405a4d4d686SBarry Smith and work space for performing finite difference approximations of 40665f2ba5bSLois Curfman McInnes Jacobian-vector products, F'(u)*a, 4079a6cb015SBarry Smith 4089a6cb015SBarry Smith The default code uses the following approach to compute h 409a4d4d686SBarry Smith 410a4d4d686SBarry Smith .vb 41165f2ba5bSLois Curfman McInnes F'(u)*a = [F(u+h*a) - F(u)]/h where 412a4d4d686SBarry Smith h = error_rel*u'a/||a||^2 if |u'a| > umin*||a||_{1} 413a4d4d686SBarry Smith = error_rel*umin*sign(u'a)*||a||_{1}/||a||^2 otherwise 414a4d4d686SBarry Smith where 415a4d4d686SBarry Smith error_rel = square root of relative error in function evaluation 416a4d4d686SBarry Smith umin = minimum iterate parameter 417a4d4d686SBarry Smith .ve 418efb30889SBarry Smith (see MATSNESMF_WP or MATSNESMF_DS) 419a4d4d686SBarry Smith 4205a655dc6SBarry Smith The user can set the error_rel via MatSNESMFSetFunctionError() and 42165f2ba5bSLois Curfman McInnes umin via MatSNESMFDefaultSetUmin(); see the nonlinear solvers chapter 42265f2ba5bSLois Curfman McInnes of the users manual for details. 423a4d4d686SBarry Smith 424a4d4d686SBarry Smith The user should call MatDestroy() when finished with the matrix-free 425a4d4d686SBarry Smith matrix context. 426a4d4d686SBarry Smith 427a4d4d686SBarry Smith Options Database Keys: 428a4d4d686SBarry Smith + -snes_mf_err <error_rel> - Sets error_rel 429efb30889SBarry Smith + -snes_mf_type - wp or ds (see MATSNESMF_WP or MATSNESMF_DS) 4309a6cb015SBarry Smith . -snes_mf_unim <umin> - Sets umin (for default PETSc routine that computes h only) 431a4d4d686SBarry Smith - -snes_mf_ksp_monitor - KSP monitor routine that prints differencing h 432a4d4d686SBarry Smith 433a4d4d686SBarry Smith .keywords: SNES, default, matrix-free, create, matrix 434a4d4d686SBarry Smith 4355a655dc6SBarry Smith .seealso: MatDestroy(), MatSNESMFSetFunctionError(), MatSNESMFDefaultSetUmin() 4361d1367b7SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), MatCreateMF(), 437fed8bd04SBarry Smith MatSNESMFGetH(),MatSNESMFKSPMonitor(), MatSNESMFRegisterDynamic), MatSNESMFComputeJacobian() 438a4d4d686SBarry Smith 439a4d4d686SBarry Smith @*/ 44063dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatCreateSNESMF(SNES snes,Vec x,Mat *J) 441a4d4d686SBarry Smith { 4421d1367b7SBarry Smith MatSNESMFCtx mfctx; 443dfbe8321SBarry Smith PetscErrorCode ierr; 4441d1367b7SBarry Smith 4451d1367b7SBarry Smith PetscFunctionBegin; 4461d1367b7SBarry Smith ierr = MatCreateMF(x,J);CHKERRQ(ierr); 4477e9d5209SBarry Smith 4487e9d5209SBarry Smith mfctx = (MatSNESMFCtx)(*J)->data; 4491d1367b7SBarry Smith mfctx->snes = snes; 450b0a32e0cSBarry Smith mfctx->usesnes = PETSC_TRUE; 45152e6d16bSBarry Smith ierr = PetscLogObjectParent(snes,*J);CHKERRQ(ierr); 4521d1367b7SBarry Smith PetscFunctionReturn(0); 4531d1367b7SBarry Smith } 4541d1367b7SBarry Smith 455cf3bea43SBarry Smith EXTERN_C_BEGIN 456cf3bea43SBarry Smith #undef __FUNCT__ 457cf3bea43SBarry Smith #define __FUNCT__ "MatSNESMFSetBase_FD" 45863dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetBase_FD(Mat J,Vec U) 459cf3bea43SBarry Smith { 460dfbe8321SBarry Smith PetscErrorCode ierr; 4617e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 462cf3bea43SBarry Smith 463cf3bea43SBarry Smith PetscFunctionBegin; 464cf3bea43SBarry Smith ierr = MatSNESMFResetHHistory(J);CHKERRQ(ierr); 465cf3bea43SBarry Smith ctx->current_u = U; 466cf3bea43SBarry Smith ctx->usesnes = PETSC_FALSE; 467958c9bccSBarry Smith if (!ctx->w) { 468ba6a83e5SMatthew Knepley ierr = VecDuplicate(ctx->current_u, &ctx->w);CHKERRQ(ierr); 469ba6a83e5SMatthew Knepley } 47032dfb669SBarry Smith J->assembled = PETSC_TRUE; 471cf3bea43SBarry Smith PetscFunctionReturn(0); 472cf3bea43SBarry Smith } 473cf3bea43SBarry Smith EXTERN_C_END 4746849ba73SBarry Smith typedef PetscErrorCode (*FCN3)(Vec,Vec,PetscScalar*,void*); /* force argument to next function to not be extern C*/ 4755b7f0c42SBarry Smith EXTERN_C_BEGIN 4765b7f0c42SBarry Smith #undef __FUNCT__ 4775b7f0c42SBarry Smith #define __FUNCT__ "MatSNESMFSetCheckh_FD" 47863dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetCheckh_FD(Mat J,FCN3 fun,void*ectx) 4795b7f0c42SBarry Smith { 4805b7f0c42SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 4815b7f0c42SBarry Smith 4825b7f0c42SBarry Smith PetscFunctionBegin; 4835b7f0c42SBarry Smith ctx->checkh = fun; 4845b7f0c42SBarry Smith ctx->checkhctx = ectx; 4855b7f0c42SBarry Smith PetscFunctionReturn(0); 4865b7f0c42SBarry Smith } 4875b7f0c42SBarry Smith EXTERN_C_END 4885b7f0c42SBarry Smith 4894a2ae208SSatish Balay #undef __FUNCT__ 4907e9d5209SBarry Smith #define __FUNCT__ "MatSNESMFSetFromOptions" 4917e9d5209SBarry Smith /*@ 4927e9d5209SBarry Smith MatSNESMFSetFromOptions - Sets the MatSNESMF options from the command line 4937e9d5209SBarry Smith parameter. 4947e9d5209SBarry Smith 4957e9d5209SBarry Smith Collective on Mat 4967e9d5209SBarry Smith 4977e9d5209SBarry Smith Input Parameters: 4987e9d5209SBarry Smith . mat - the matrix obtained with MatCreateSNESMF() 4997e9d5209SBarry Smith 5007e9d5209SBarry Smith Options Database Keys: 501efb30889SBarry Smith + -snes_mf_type - wp or ds (see MATSNESMF_WP or MATSNESMF_DS) 5027e9d5209SBarry Smith - -snes_mf_err - square root of estimated relative error in function evaluation 5037e9d5209SBarry Smith - -snes_mf_period - how often h is recomputed, defaults to 1, everytime 5047e9d5209SBarry Smith 5057e9d5209SBarry Smith Level: advanced 5067e9d5209SBarry Smith 5077e9d5209SBarry Smith .keywords: SNES, matrix-free, parameters 5087e9d5209SBarry Smith 5097e9d5209SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFSetHHistory(), 5107e9d5209SBarry Smith MatSNESMFResetHHistory(), MatSNESMFKSPMonitor() 5117e9d5209SBarry Smith @*/ 51263dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFromOptions(Mat mat) 5137e9d5209SBarry Smith { 5147e9d5209SBarry Smith MatSNESMFCtx mfctx = (MatSNESMFCtx)mat->data; 515dfbe8321SBarry Smith PetscErrorCode ierr; 5167e9d5209SBarry Smith PetscTruth flg; 5177e9d5209SBarry Smith char ftype[256]; 5187e9d5209SBarry Smith 5197e9d5209SBarry Smith PetscFunctionBegin; 5207e9d5209SBarry Smith if (!MatSNESMFRegisterAllCalled) {ierr = MatSNESMFRegisterAll(PETSC_NULL);CHKERRQ(ierr);} 5217e9d5209SBarry Smith 5227e9d5209SBarry Smith ierr = PetscOptionsBegin(mfctx->comm,mfctx->prefix,"Set matrix free computation parameters","MatSNESMF");CHKERRQ(ierr); 5237e9d5209SBarry Smith ierr = PetscOptionsList("-snes_mf_type","Matrix free type","MatSNESMFSetType",MatSNESMPetscFList,mfctx->type_name,ftype,256,&flg);CHKERRQ(ierr); 5247e9d5209SBarry Smith if (flg) { 5257e9d5209SBarry Smith ierr = MatSNESMFSetType(mat,ftype);CHKERRQ(ierr); 5267e9d5209SBarry Smith } 5277e9d5209SBarry Smith 52887828ca2SBarry Smith ierr = PetscOptionsReal("-snes_mf_err","set sqrt relative error in function","MatSNESMFSetFunctionError",mfctx->error_rel,&mfctx->error_rel,0);CHKERRQ(ierr); 5297e9d5209SBarry Smith ierr = PetscOptionsInt("-snes_mf_period","how often h is recomputed","MatSNESMFSetPeriod",mfctx->recomputeperiod,&mfctx->recomputeperiod,0);CHKERRQ(ierr); 5307e9d5209SBarry Smith if (mfctx->snes) { 5317e9d5209SBarry Smith ierr = PetscOptionsName("-snes_mf_ksp_monitor","Monitor matrix-free parameters","MatSNESMFKSPMonitor",&flg);CHKERRQ(ierr); 5327e9d5209SBarry Smith if (flg) { 5337e9d5209SBarry Smith KSP ksp; 53494b7f48cSBarry Smith ierr = SNESGetKSP(mfctx->snes,&ksp);CHKERRQ(ierr); 5357e9d5209SBarry Smith ierr = KSPSetMonitor(ksp,MatSNESMFKSPMonitor,PETSC_NULL,0);CHKERRQ(ierr); 5367e9d5209SBarry Smith } 5377e9d5209SBarry Smith } 5385b7f0c42SBarry Smith ierr = PetscOptionsName("-snes_mf_check_positivity","Insure that U + h*a is nonnegative","MatSNESMFSetCheckh",&flg);CHKERRQ(ierr); 5395b7f0c42SBarry Smith if (flg) { 5405b7f0c42SBarry Smith ierr = MatSNESMFSetCheckh(mat,MatSNESMFCheckPositivity,0);CHKERRQ(ierr); 5415b7f0c42SBarry Smith } 5427e9d5209SBarry Smith if (mfctx->ops->setfromoptions) { 5437e9d5209SBarry Smith ierr = (*mfctx->ops->setfromoptions)(mfctx);CHKERRQ(ierr); 5447e9d5209SBarry Smith } 5457e9d5209SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 5467e9d5209SBarry Smith PetscFunctionReturn(0); 5477e9d5209SBarry Smith } 5487e9d5209SBarry Smith 5490bad9183SKris Buschelman /*MC 550fafad747SKris Buschelman MATMFFD - MATMFFD = "mffd" - A matrix free matrix type. 5510bad9183SKris Buschelman 5520bad9183SKris Buschelman Level: advanced 5530bad9183SKris Buschelman 5548bc8193eSBarry Smith .seealso: MatCreateMF(), MatCreateSNESMF() 5550bad9183SKris Buschelman M*/ 556fe93831dSBarry Smith EXTERN_C_BEGIN 5577e9d5209SBarry Smith #undef __FUNCT__ 5587e9d5209SBarry Smith #define __FUNCT__ "MatCreate_MFFD" 55963dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatCreate_MFFD(Mat A) 5607e9d5209SBarry Smith { 5617e9d5209SBarry Smith MatSNESMFCtx mfctx; 562dfbe8321SBarry Smith PetscErrorCode ierr; 5637e9d5209SBarry Smith 5647e9d5209SBarry Smith PetscFunctionBegin; 5656e087cb5SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 5666e087cb5SMatthew Knepley ierr = SNESInitializePackage(PETSC_NULL);CHKERRQ(ierr); 5676e087cb5SMatthew Knepley #endif 5686e087cb5SMatthew Knepley 56952e6d16bSBarry Smith ierr = PetscHeaderCreate(mfctx,_p_MatSNESMFCtx,struct _MFOps,MATSNESMFCTX_COOKIE,0,"SNESMF",A->comm,MatDestroy_MFFD,MatView_MFFD);CHKERRQ(ierr); 5707e9d5209SBarry Smith mfctx->sp = 0; 5717e9d5209SBarry Smith mfctx->snes = 0; 57277d8c4bbSBarry Smith mfctx->error_rel = PETSC_SQRT_MACHINE_EPSILON; 5737e9d5209SBarry Smith mfctx->recomputeperiod = 1; 5747e9d5209SBarry Smith mfctx->count = 0; 5757e9d5209SBarry Smith mfctx->currenth = 0.0; 5767e9d5209SBarry Smith mfctx->historyh = PETSC_NULL; 5777e9d5209SBarry Smith mfctx->ncurrenth = 0; 5787e9d5209SBarry Smith mfctx->maxcurrenth = 0; 5797e9d5209SBarry Smith mfctx->type_name = 0; 5807e9d5209SBarry Smith mfctx->usesnes = PETSC_FALSE; 5817e9d5209SBarry Smith 582c5c390f1SBarry Smith mfctx->vshift = 0.0; 583c5c390f1SBarry Smith mfctx->vscale = 1.0; 584c5c390f1SBarry Smith 5857e9d5209SBarry Smith /* 5867e9d5209SBarry Smith Create the empty data structure to contain compute-h routines. 5877e9d5209SBarry Smith These will be filled in below from the command line options or 5887e9d5209SBarry Smith a later call with MatSNESMFSetType() or if that is not called 5898a124369SBarry Smith then it will default in the first use of MatMult_MFFD() 5907e9d5209SBarry Smith */ 5917e9d5209SBarry Smith mfctx->ops->compute = 0; 5927e9d5209SBarry Smith mfctx->ops->destroy = 0; 5937e9d5209SBarry Smith mfctx->ops->view = 0; 5947e9d5209SBarry Smith mfctx->ops->setfromoptions = 0; 5957e9d5209SBarry Smith mfctx->hctx = 0; 5967e9d5209SBarry Smith 5977e9d5209SBarry Smith mfctx->func = 0; 5987e9d5209SBarry Smith mfctx->funcctx = 0; 5997e9d5209SBarry Smith mfctx->funcvec = 0; 600ba6a83e5SMatthew Knepley mfctx->w = PETSC_NULL; 6017e9d5209SBarry Smith 60265df01d8SBarry Smith A->data = mfctx; 6037e9d5209SBarry Smith 6048a124369SBarry Smith A->ops->mult = MatMult_MFFD; 6058a124369SBarry Smith A->ops->destroy = MatDestroy_MFFD; 6068a124369SBarry Smith A->ops->view = MatView_MFFD; 6078a124369SBarry Smith A->ops->assemblyend = MatAssemblyEnd_MFFD; 6088a124369SBarry Smith A->ops->getdiagonal = MatGetDiagonal_MFFD; 609c5c390f1SBarry Smith A->ops->scale = MatScale_MFFD; 610c5c390f1SBarry Smith A->ops->shift = MatShift_MFFD; 61165df01d8SBarry Smith A->ops->setfromoptions = MatSNESMFSetFromOptions; 61232dfb669SBarry Smith A->assembled = PETSC_TRUE; 6137e9d5209SBarry Smith 61465df01d8SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatSNESMFSetBase_C","MatSNESMFSetBase_FD",MatSNESMFSetBase_FD);CHKERRQ(ierr); 615c5c390f1SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatSNESMFSetFunctioniBase_C","MatSNESMFSetFunctioniBase_FD",MatSNESMFSetFunctioniBase_FD);CHKERRQ(ierr); 61687828ca2SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatSNESMFSetFunctioni_C","MatSNESMFSetFunctioni_FD",MatSNESMFSetFunctioni_FD);CHKERRQ(ierr); 6175b7f0c42SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatSNESMFSetCheckh_C","MatSNESMFSetCheckh_FD",MatSNESMFSetCheckh_FD);CHKERRQ(ierr); 61865df01d8SBarry Smith mfctx->mat = A; 6197e9d5209SBarry Smith 6207e9d5209SBarry Smith PetscFunctionReturn(0); 6217e9d5209SBarry Smith } 622fe93831dSBarry Smith EXTERN_C_END 6237e9d5209SBarry Smith 6247e9d5209SBarry Smith #undef __FUNCT__ 6254a2ae208SSatish Balay #define __FUNCT__ "MatCreateMF" 62652baeb72SSatish Balay /*@ 6271d1367b7SBarry Smith MatCreateMF - Creates a matrix-free matrix. See also MatCreateSNESMF() 6281d1367b7SBarry Smith 6291d1367b7SBarry Smith Collective on Vec 6301d1367b7SBarry Smith 6311d1367b7SBarry Smith Input Parameters: 6321d1367b7SBarry Smith . x - vector that defines layout of the vectors and matrices 6331d1367b7SBarry Smith 6341d1367b7SBarry Smith Output Parameter: 6351d1367b7SBarry Smith . J - the matrix-free matrix 6361d1367b7SBarry Smith 6371d1367b7SBarry Smith Level: advanced 6381d1367b7SBarry Smith 6391d1367b7SBarry Smith Notes: 6401d1367b7SBarry Smith The matrix-free matrix context merely contains the function pointers 6411d1367b7SBarry Smith and work space for performing finite difference approximations of 6421d1367b7SBarry Smith Jacobian-vector products, F'(u)*a, 6431d1367b7SBarry Smith 6441d1367b7SBarry Smith The default code uses the following approach to compute h 6451d1367b7SBarry Smith 6461d1367b7SBarry Smith .vb 6471d1367b7SBarry Smith F'(u)*a = [F(u+h*a) - F(u)]/h where 6481d1367b7SBarry Smith h = error_rel*u'a/||a||^2 if |u'a| > umin*||a||_{1} 6491d1367b7SBarry Smith = error_rel*umin*sign(u'a)*||a||_{1}/||a||^2 otherwise 6501d1367b7SBarry Smith where 6511d1367b7SBarry Smith error_rel = square root of relative error in function evaluation 6521d1367b7SBarry Smith umin = minimum iterate parameter 6531d1367b7SBarry Smith .ve 6541d1367b7SBarry Smith 6551d1367b7SBarry Smith The user can set the error_rel via MatSNESMFSetFunctionError() and 6561d1367b7SBarry Smith umin via MatSNESMFDefaultSetUmin(); see the nonlinear solvers chapter 6571d1367b7SBarry Smith of the users manual for details. 6581d1367b7SBarry Smith 6591d1367b7SBarry Smith The user should call MatDestroy() when finished with the matrix-free 6601d1367b7SBarry Smith matrix context. 6611d1367b7SBarry Smith 6621d1367b7SBarry Smith Options Database Keys: 6631d1367b7SBarry Smith + -snes_mf_err <error_rel> - Sets error_rel 6641d1367b7SBarry Smith . -snes_mf_unim <umin> - Sets umin (for default PETSc routine that computes h only) 6655b7f0c42SBarry Smith . -snes_mf_ksp_monitor - KSP monitor routine that prints differencing h 6665b7f0c42SBarry Smith - -snes_mf_check_positivity 6671d1367b7SBarry Smith 6681d1367b7SBarry Smith .keywords: default, matrix-free, create, matrix 6691d1367b7SBarry Smith 670*6ce558aeSBarry Smith .seealso: MatDestroy(), MatSNESMFSetFunctionError(), MatSNESMFDefaultSetUmin(), MatSNESMFSetFunction() 6711d1367b7SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), MatCreateSNESMF(), 672fed8bd04SBarry Smith MatSNESMFGetH(),MatSNESMFKSPMonitor(), MatSNESMFRegisterDynamic),, MatSNESMFComputeJacobian() 6731d1367b7SBarry Smith 6741d1367b7SBarry Smith @*/ 67563dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatCreateMF(Vec x,Mat *J) 6761d1367b7SBarry Smith { 677a4d4d686SBarry Smith MPI_Comm comm; 6786849ba73SBarry Smith PetscErrorCode ierr; 679a7cc72afSBarry Smith PetscInt n,nloc; 680a4d4d686SBarry Smith 681a4d4d686SBarry Smith PetscFunctionBegin; 6821d1367b7SBarry Smith ierr = PetscObjectGetComm((PetscObject)x,&comm);CHKERRQ(ierr); 68365df01d8SBarry Smith ierr = VecGetSize(x,&n);CHKERRQ(ierr); 68465df01d8SBarry Smith ierr = VecGetLocalSize(x,&nloc);CHKERRQ(ierr); 685f69a0ea3SMatthew Knepley ierr = MatCreate(comm,J);CHKERRQ(ierr); 686f69a0ea3SMatthew Knepley ierr = MatSetSizes(*J,nloc,nloc,n,n);CHKERRQ(ierr); 687e56c5435SBarry Smith ierr = MatRegisterDynamic(MATMFFD,0,"MatCreate_MFFD",MatCreate_MFFD);CHKERRQ(ierr); 68865df01d8SBarry Smith ierr = MatSetType(*J,MATMFFD);CHKERRQ(ierr); 6899a6cb015SBarry Smith PetscFunctionReturn(0); 6909a6cb015SBarry Smith } 6919a6cb015SBarry Smith 692a4d4d686SBarry Smith 6934a2ae208SSatish Balay #undef __FUNCT__ 6944a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFGetH" 695a4d4d686SBarry Smith /*@ 69665f2ba5bSLois Curfman McInnes MatSNESMFGetH - Gets the last value that was used as the differencing 697a4d4d686SBarry Smith parameter. 698a4d4d686SBarry Smith 699a4d4d686SBarry Smith Not Collective 700a4d4d686SBarry Smith 701a4d4d686SBarry Smith Input Parameters: 7025a655dc6SBarry Smith . mat - the matrix obtained with MatCreateSNESMF() 703a4d4d686SBarry Smith 704a4d4d686SBarry Smith Output Paramter: 705a4d4d686SBarry Smith . h - the differencing step size 706a4d4d686SBarry Smith 70715091d37SBarry Smith Level: advanced 70815091d37SBarry Smith 709a4d4d686SBarry Smith .keywords: SNES, matrix-free, parameters 710a4d4d686SBarry Smith 7115a655dc6SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFSetHHistory(), 7125a655dc6SBarry Smith MatSNESMFResetHHistory(),MatSNESMFKSPMonitor() 713a4d4d686SBarry Smith @*/ 71463dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFGetH(Mat mat,PetscScalar *h) 715a4d4d686SBarry Smith { 7167e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 717a4d4d686SBarry Smith 718a4d4d686SBarry Smith PetscFunctionBegin; 719a4d4d686SBarry Smith *h = ctx->currenth; 720a4d4d686SBarry Smith PetscFunctionReturn(0); 721a4d4d686SBarry Smith } 722a4d4d686SBarry Smith 7234a2ae208SSatish Balay #undef __FUNCT__ 7244a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFKSPMonitor" 725a4d4d686SBarry Smith /* 7265a655dc6SBarry Smith MatSNESMFKSPMonitor - A KSP monitor for use with the default PETSc 72765f2ba5bSLois Curfman McInnes SNES matrix free routines. Prints the differencing parameter used at 72865f2ba5bSLois Curfman McInnes each step. 729a4d4d686SBarry Smith */ 73063dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFKSPMonitor(KSP ksp,PetscInt n,PetscReal rnorm,void *dummy) 731a4d4d686SBarry Smith { 732a4d4d686SBarry Smith PC pc; 7335a655dc6SBarry Smith MatSNESMFCtx ctx; 734dfbe8321SBarry Smith PetscErrorCode ierr; 735a4d4d686SBarry Smith Mat mat; 736a4d4d686SBarry Smith MPI_Comm comm; 737a4d4d686SBarry Smith PetscTruth nonzeroinitialguess; 738a4d4d686SBarry Smith 739a4d4d686SBarry Smith PetscFunctionBegin; 740a4d4d686SBarry Smith ierr = PetscObjectGetComm((PetscObject)ksp,&comm);CHKERRQ(ierr); 741a4d4d686SBarry Smith ierr = KSPGetPC(ksp,&pc);CHKERRQ(ierr); 742a4d4d686SBarry Smith ierr = KSPGetInitialGuessNonzero(ksp,&nonzeroinitialguess);CHKERRQ(ierr); 743a4d4d686SBarry Smith ierr = PCGetOperators(pc,&mat,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr); 7447e9d5209SBarry Smith ctx = (MatSNESMFCtx)mat->data; 7457e9d5209SBarry Smith 746a4d4d686SBarry Smith if (n > 0 || nonzeroinitialguess) { 747aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 748a83599f4SBarry Smith ierr = PetscPrintf(comm,"%D KSP Residual norm %14.12e h %G + %G i\n",n,rnorm, 749329f5518SBarry Smith PetscRealPart(ctx->currenth),PetscImaginaryPart(ctx->currenth));CHKERRQ(ierr); 750a4d4d686SBarry Smith #else 751a83599f4SBarry Smith ierr = PetscPrintf(comm,"%D KSP Residual norm %14.12e h %G \n",n,rnorm,ctx->currenth);CHKERRQ(ierr); 752a4d4d686SBarry Smith #endif 753a4d4d686SBarry Smith } else { 75477431f27SBarry Smith ierr = PetscPrintf(comm,"%D KSP Residual norm %14.12e\n",n,rnorm);CHKERRQ(ierr); 755a4d4d686SBarry Smith } 756a4d4d686SBarry Smith PetscFunctionReturn(0); 757a4d4d686SBarry Smith } 758a4d4d686SBarry Smith 7594a2ae208SSatish Balay #undef __FUNCT__ 7604a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetFunction" 76185614651SBarry Smith /*@C 76285614651SBarry Smith MatSNESMFSetFunction - Sets the function used in applying the matrix free. 76385614651SBarry Smith 76485614651SBarry Smith Collective on Mat 76585614651SBarry Smith 76685614651SBarry Smith Input Parameters: 76785614651SBarry Smith + mat - the matrix free matrix created via MatCreateSNESMF() 76885614651SBarry Smith . v - workspace vector 76985614651SBarry Smith . func - the function to use 77085614651SBarry Smith - funcctx - optional function context passed to function 77185614651SBarry Smith 77285614651SBarry Smith Level: advanced 77385614651SBarry Smith 77485614651SBarry Smith Notes: 77585614651SBarry Smith If you use this you MUST call MatAssemblyBegin()/MatAssemblyEnd() on the matrix free 77685614651SBarry Smith matrix inside your compute Jacobian routine 77785614651SBarry Smith 77885614651SBarry Smith If this is not set then it will use the function set with SNESSetFunction() 77985614651SBarry Smith 78085614651SBarry Smith .keywords: SNES, matrix-free, function 78185614651SBarry Smith 78285614651SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFGetH(), 78385614651SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 78485614651SBarry Smith MatSNESMFKSPMonitor(), SNESetFunction() 78585614651SBarry Smith @*/ 78663dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunction(Mat mat,Vec v,PetscErrorCode (*func)(SNES,Vec,Vec,void *),void *funcctx) 78785614651SBarry Smith { 7887e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 78985614651SBarry Smith 79085614651SBarry Smith PetscFunctionBegin; 79185614651SBarry Smith ctx->func = func; 79285614651SBarry Smith ctx->funcctx = funcctx; 79385614651SBarry Smith ctx->funcvec = v; 79485614651SBarry Smith PetscFunctionReturn(0); 79585614651SBarry Smith } 79685614651SBarry Smith 797cf57b110SBarry Smith #undef __FUNCT__ 798cf57b110SBarry Smith #define __FUNCT__ "MatSNESMFSetFunctioni" 799cf57b110SBarry Smith /*@C 800cf57b110SBarry Smith MatSNESMFSetFunctioni - Sets the function for a single component 801cf57b110SBarry Smith 802cf57b110SBarry Smith Collective on Mat 803cf57b110SBarry Smith 804cf57b110SBarry Smith Input Parameters: 805cf57b110SBarry Smith + mat - the matrix free matrix created via MatCreateSNESMF() 806cf57b110SBarry Smith - funci - the function to use 807cf57b110SBarry Smith 808cf57b110SBarry Smith Level: advanced 809cf57b110SBarry Smith 810cf57b110SBarry Smith Notes: 811cf57b110SBarry Smith If you use this you MUST call MatAssemblyBegin()/MatAssemblyEnd() on the matrix free 812cf57b110SBarry Smith matrix inside your compute Jacobian routine 813cf57b110SBarry Smith 814cf57b110SBarry Smith 815cf57b110SBarry Smith .keywords: SNES, matrix-free, function 816cf57b110SBarry Smith 817cf57b110SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFGetH(), 818cf57b110SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 819cf57b110SBarry Smith MatSNESMFKSPMonitor(), SNESetFunction() 820cf57b110SBarry Smith @*/ 82163dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunctioni(Mat mat,PetscErrorCode (*funci)(PetscInt,Vec,PetscScalar*,void *)) 822cf57b110SBarry Smith { 823a7cc72afSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscErrorCode (*)(PetscInt,Vec,PetscScalar*,void *)); 824cf57b110SBarry Smith 825cf57b110SBarry Smith PetscFunctionBegin; 8264482741eSBarry Smith PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 827c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSNESMFSetFunctioni_C",(void (**)(void))&f);CHKERRQ(ierr); 82887828ca2SBarry Smith if (f) { 82987828ca2SBarry Smith ierr = (*f)(mat,funci);CHKERRQ(ierr); 83087828ca2SBarry Smith } 831cf57b110SBarry Smith PetscFunctionReturn(0); 832cf57b110SBarry Smith } 833cf57b110SBarry Smith 83487828ca2SBarry Smith 835cf57b110SBarry Smith #undef __FUNCT__ 836cf57b110SBarry Smith #define __FUNCT__ "MatSNESMFSetFunctioniBase" 837cf57b110SBarry Smith /*@C 838cf57b110SBarry Smith MatSNESMFSetFunctioniBase - Sets the base vector for a single component function evaluation 839cf57b110SBarry Smith 840cf57b110SBarry Smith Collective on Mat 841cf57b110SBarry Smith 842cf57b110SBarry Smith Input Parameters: 843cf57b110SBarry Smith + mat - the matrix free matrix created via MatCreateSNESMF() 844cf57b110SBarry Smith - func - the function to use 845cf57b110SBarry Smith 846cf57b110SBarry Smith Level: advanced 847cf57b110SBarry Smith 848cf57b110SBarry Smith Notes: 849cf57b110SBarry Smith If you use this you MUST call MatAssemblyBegin()/MatAssemblyEnd() on the matrix free 850cf57b110SBarry Smith matrix inside your compute Jacobian routine 851cf57b110SBarry Smith 852cf57b110SBarry Smith 853cf57b110SBarry Smith .keywords: SNES, matrix-free, function 854cf57b110SBarry Smith 855cf57b110SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFGetH(), 856cf57b110SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 857cf57b110SBarry Smith MatSNESMFKSPMonitor(), SNESetFunction() 858cf57b110SBarry Smith @*/ 85963dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunctioniBase(Mat mat,PetscErrorCode (*func)(Vec,void *)) 860cf57b110SBarry Smith { 8616849ba73SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscErrorCode (*)(Vec,void *)); 862cf57b110SBarry Smith 863cf57b110SBarry Smith PetscFunctionBegin; 8644482741eSBarry Smith PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 865c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSNESMFSetFunctioniBase_C",(void (**)(void))&f);CHKERRQ(ierr); 86687828ca2SBarry Smith if (f) { 86787828ca2SBarry Smith ierr = (*f)(mat,func);CHKERRQ(ierr); 86887828ca2SBarry Smith } 869cf57b110SBarry Smith PetscFunctionReturn(0); 870cf57b110SBarry Smith } 871cf57b110SBarry Smith 87285614651SBarry Smith 8734a2ae208SSatish Balay #undef __FUNCT__ 8744a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetPeriod" 875329f5518SBarry Smith /*@ 876329f5518SBarry Smith MatSNESMFSetPeriod - Sets how often h is recomputed, by default it is everytime 877329f5518SBarry Smith 878329f5518SBarry Smith Collective on Mat 879329f5518SBarry Smith 880329f5518SBarry Smith Input Parameters: 881329f5518SBarry Smith + mat - the matrix free matrix created via MatCreateSNESMF() 882329f5518SBarry Smith - period - 1 for everytime, 2 for every second etc 883329f5518SBarry Smith 884329f5518SBarry Smith Options Database Keys: 885329f5518SBarry Smith + -snes_mf_period <period> 886329f5518SBarry Smith 887329f5518SBarry Smith Level: advanced 888329f5518SBarry Smith 889329f5518SBarry Smith 890329f5518SBarry Smith .keywords: SNES, matrix-free, parameters 891329f5518SBarry Smith 892329f5518SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFGetH(), 893329f5518SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 894329f5518SBarry Smith MatSNESMFKSPMonitor() 895329f5518SBarry Smith @*/ 89663dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetPeriod(Mat mat,PetscInt period) 897329f5518SBarry Smith { 8987e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 899329f5518SBarry Smith 900329f5518SBarry Smith PetscFunctionBegin; 901329f5518SBarry Smith ctx->recomputeperiod = period; 902329f5518SBarry Smith PetscFunctionReturn(0); 903329f5518SBarry Smith } 904329f5518SBarry Smith 9054a2ae208SSatish Balay #undef __FUNCT__ 9064a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetFunctionError" 907a4d4d686SBarry Smith /*@ 9085a655dc6SBarry Smith MatSNESMFSetFunctionError - Sets the error_rel for the approximation of 909a4d4d686SBarry Smith matrix-vector products using finite differences. 910a4d4d686SBarry Smith 911a4d4d686SBarry Smith Collective on Mat 912a4d4d686SBarry Smith 913a4d4d686SBarry Smith Input Parameters: 9145a655dc6SBarry Smith + mat - the matrix free matrix created via MatCreateSNESMF() 9159a6cb015SBarry Smith - error_rel - relative error (should be set to the square root of 916a4d4d686SBarry Smith the relative error in the function evaluations) 917a4d4d686SBarry Smith 91815091d37SBarry Smith Options Database Keys: 91915091d37SBarry Smith + -snes_mf_err <error_rel> - Sets error_rel 92015091d37SBarry Smith 92115091d37SBarry Smith Level: advanced 92215091d37SBarry Smith 923a4d4d686SBarry Smith Notes: 924a4d4d686SBarry Smith The default matrix-free matrix-vector product routine computes 925a4d4d686SBarry Smith .vb 92665f2ba5bSLois Curfman McInnes F'(u)*a = [F(u+h*a) - F(u)]/h where 927a4d4d686SBarry Smith h = error_rel*u'a/||a||^2 if |u'a| > umin*||a||_{1} 928a4d4d686SBarry Smith = error_rel*umin*sign(u'a)*||a||_{1}/||a||^2 else 929a4d4d686SBarry Smith .ve 930a4d4d686SBarry Smith 931a4d4d686SBarry Smith .keywords: SNES, matrix-free, parameters 932a4d4d686SBarry Smith 9335a655dc6SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFGetH(), 9345a655dc6SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 9355a655dc6SBarry Smith MatSNESMFKSPMonitor() 936a4d4d686SBarry Smith @*/ 93763dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunctionError(Mat mat,PetscReal error) 938a4d4d686SBarry Smith { 9397e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 940a4d4d686SBarry Smith 941a4d4d686SBarry Smith PetscFunctionBegin; 942a4d4d686SBarry Smith if (error != PETSC_DEFAULT) ctx->error_rel = error; 943a4d4d686SBarry Smith PetscFunctionReturn(0); 944a4d4d686SBarry Smith } 945a4d4d686SBarry Smith 9464a2ae208SSatish Balay #undef __FUNCT__ 9474a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFAddNullSpace" 948a4d4d686SBarry Smith /*@ 94965f2ba5bSLois Curfman McInnes MatSNESMFAddNullSpace - Provides a null space that an operator is 95065f2ba5bSLois Curfman McInnes supposed to have. Since roundoff will create a small component in 95165f2ba5bSLois Curfman McInnes the null space, if you know the null space you may have it 95265f2ba5bSLois Curfman McInnes automatically removed. 953a4d4d686SBarry Smith 954a4d4d686SBarry Smith Collective on Mat 955a4d4d686SBarry Smith 956a4d4d686SBarry Smith Input Parameters: 957a4d4d686SBarry Smith + J - the matrix-free matrix context 95874637425SBarry Smith - nullsp - object created with MatNullSpaceCreate() 959a4d4d686SBarry Smith 96015091d37SBarry Smith Level: advanced 96115091d37SBarry Smith 962a4d4d686SBarry Smith .keywords: SNES, matrix-free, null space 963a4d4d686SBarry Smith 96474637425SBarry Smith .seealso: MatNullSpaceCreate(), MatSNESMFGetH(), MatCreateSNESMF(), 9655a655dc6SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 9665a655dc6SBarry Smith MatSNESMFKSPMonitor(), MatSNESMFErrorRel() 967a4d4d686SBarry Smith @*/ 96863dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFAddNullSpace(Mat J,MatNullSpace nullsp) 969a4d4d686SBarry Smith { 970dfbe8321SBarry Smith PetscErrorCode ierr; 9717e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 972a4d4d686SBarry Smith MPI_Comm comm; 973a4d4d686SBarry Smith 974a4d4d686SBarry Smith PetscFunctionBegin; 9752d0c0e3bSBarry Smith ierr = PetscObjectGetComm((PetscObject)J,&comm);CHKERRQ(ierr); 976a4d4d686SBarry Smith 97785614651SBarry Smith ctx->sp = nullsp; 97885614651SBarry Smith ierr = PetscObjectReference((PetscObject)nullsp);CHKERRQ(ierr); 979a4d4d686SBarry Smith PetscFunctionReturn(0); 980a4d4d686SBarry Smith } 981a4d4d686SBarry Smith 9824a2ae208SSatish Balay #undef __FUNCT__ 9834a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetHHistory" 984a4d4d686SBarry Smith /*@ 98565f2ba5bSLois Curfman McInnes MatSNESMFSetHHistory - Sets an array to collect a history of the 98665f2ba5bSLois Curfman McInnes differencing values (h) computed for the matrix-free product. 987a4d4d686SBarry Smith 988a4d4d686SBarry Smith Collective on Mat 989a4d4d686SBarry Smith 990a4d4d686SBarry Smith Input Parameters: 991a4d4d686SBarry Smith + J - the matrix-free matrix context 99265f2ba5bSLois Curfman McInnes . histroy - space to hold the history 99365f2ba5bSLois Curfman McInnes - nhistory - number of entries in history, if more entries are generated than 99465f2ba5bSLois Curfman McInnes nhistory, then the later ones are discarded 995a4d4d686SBarry Smith 99615091d37SBarry Smith Level: advanced 99715091d37SBarry Smith 998a4d4d686SBarry Smith Notes: 99965f2ba5bSLois Curfman McInnes Use MatSNESMFResetHHistory() to reset the history counter and collect 100065f2ba5bSLois Curfman McInnes a new batch of differencing parameters, h. 1001a4d4d686SBarry Smith 1002a4d4d686SBarry Smith .keywords: SNES, matrix-free, h history, differencing history 1003a4d4d686SBarry Smith 10045a655dc6SBarry Smith .seealso: MatSNESMFGetH(), MatCreateSNESMF(), 10055a655dc6SBarry Smith MatSNESMFResetHHistory(), 10065a655dc6SBarry Smith MatSNESMFKSPMonitor(), MatSNESMFSetFunctionError() 1007a4d4d686SBarry Smith 1008a4d4d686SBarry Smith @*/ 100963dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetHHistory(Mat J,PetscScalar history[],PetscInt nhistory) 1010a4d4d686SBarry Smith { 10117e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 1012a4d4d686SBarry Smith 1013a4d4d686SBarry Smith PetscFunctionBegin; 1014a4d4d686SBarry Smith ctx->historyh = history; 1015a4d4d686SBarry Smith ctx->maxcurrenth = nhistory; 1016a4d4d686SBarry Smith ctx->currenth = 0; 1017a4d4d686SBarry Smith PetscFunctionReturn(0); 1018a4d4d686SBarry Smith } 1019a4d4d686SBarry Smith 10204a2ae208SSatish Balay #undef __FUNCT__ 10214a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFResetHHistory" 1022a4d4d686SBarry Smith /*@ 10235a655dc6SBarry Smith MatSNESMFResetHHistory - Resets the counter to zero to begin 1024a4d4d686SBarry Smith collecting a new set of differencing histories. 1025a4d4d686SBarry Smith 1026a4d4d686SBarry Smith Collective on Mat 1027a4d4d686SBarry Smith 1028a4d4d686SBarry Smith Input Parameters: 1029a4d4d686SBarry Smith . J - the matrix-free matrix context 1030a4d4d686SBarry Smith 103115091d37SBarry Smith Level: advanced 103215091d37SBarry Smith 1033a4d4d686SBarry Smith Notes: 103465f2ba5bSLois Curfman McInnes Use MatSNESMFSetHHistory() to create the original history counter. 1035a4d4d686SBarry Smith 1036a4d4d686SBarry Smith .keywords: SNES, matrix-free, h history, differencing history 1037a4d4d686SBarry Smith 10385a655dc6SBarry Smith .seealso: MatSNESMFGetH(), MatCreateSNESMF(), 10395a655dc6SBarry Smith MatSNESMFSetHHistory(), 10405a655dc6SBarry Smith MatSNESMFKSPMonitor(), MatSNESMFSetFunctionError() 1041a4d4d686SBarry Smith 1042a4d4d686SBarry Smith @*/ 104363dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFResetHHistory(Mat J) 1044a4d4d686SBarry Smith { 10457e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 1046a4d4d686SBarry Smith 1047a4d4d686SBarry Smith PetscFunctionBegin; 1048be726c96SBarry Smith ctx->ncurrenth = 0; 1049a4d4d686SBarry Smith PetscFunctionReturn(0); 1050a4d4d686SBarry Smith } 1051a4d4d686SBarry Smith 10524a2ae208SSatish Balay #undef __FUNCT__ 1053fed8bd04SBarry Smith #define __FUNCT__ "MatSNESMFComputeJacobian" 10543960baedSBarry Smith /*@ 10553960baedSBarry Smith MatSNESMFComputeJacobian - Tells the matrix-free Jacobian object the new location at which 10563960baedSBarry Smith Jacobian matrix vector products will be computed at, i.e. J(x) * a. 10573960baedSBarry Smith 10583960baedSBarry Smith Collective on SNES 10593960baedSBarry Smith 10603960baedSBarry Smith Input Parameters: 10613960baedSBarry Smith + snes - the nonlinear solver context 10623960baedSBarry Smith . x - the point at which the Jacobian vector products will be performed 10633960baedSBarry Smith . jac - the matrix-free Jacobian object 10643960baedSBarry Smith . B - either the same as jac or another matrix type (ignored) 10653960baedSBarry Smith . flag - not relevent for matrix-free form 10663960baedSBarry Smith - dummy - the user context (ignored) 10673960baedSBarry Smith 10683960baedSBarry Smith Level: developer 10693960baedSBarry Smith 10703960baedSBarry Smith Notes: 10713960baedSBarry Smith This can be passed into SNESSetJacobian() when using a completely matrix-free solver, 10723960baedSBarry Smith that is the B matrix is also the same matrix operator. This is used when you select 10733960baedSBarry Smith -snes_mf but rarely used directly by users. 10743960baedSBarry Smith 10753960baedSBarry Smith .seealso: MatSNESMFGetH(), MatCreateSNESMF(), 10763960baedSBarry Smith MatSNESMFSetHHistory(), 10773960baedSBarry Smith MatSNESMFKSPMonitor(), MatSNESMFSetFunctionError(), MatSNESMFCreate(), SNESSetJacobian() 10783960baedSBarry Smith 10793960baedSBarry Smith @*/ 108063dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFComputeJacobian(SNES snes,Vec x,Mat *jac,Mat *B,MatStructure *flag,void *dummy) 10811d1367b7SBarry Smith { 1082dfbe8321SBarry Smith PetscErrorCode ierr; 10831d1367b7SBarry Smith PetscFunctionBegin; 10841d1367b7SBarry Smith ierr = MatAssemblyBegin(*jac,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10851d1367b7SBarry Smith ierr = MatAssemblyEnd(*jac,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10861d1367b7SBarry Smith PetscFunctionReturn(0); 10871d1367b7SBarry Smith } 10881d1367b7SBarry Smith 10894a2ae208SSatish Balay #undef __FUNCT__ 10904a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetBase" 10915b7f0c42SBarry Smith /*@ 10925b7f0c42SBarry Smith MatSNESMFSetBase - Sets the vector U at which matrix vector products of the 10935b7f0c42SBarry Smith Jacobian are computed 10945b7f0c42SBarry Smith 10955b7f0c42SBarry Smith Collective on Mat 10965b7f0c42SBarry Smith 10975b7f0c42SBarry Smith Input Parameters: 10985b7f0c42SBarry Smith + J - the MatSNESMF matrix 10995b7f0c42SBarry Smith - U - the vector 11005b7f0c42SBarry Smith 11015b7f0c42SBarry Smith Notes: This is rarely used directly 11025b7f0c42SBarry Smith 11035b7f0c42SBarry Smith Level: advanced 11045b7f0c42SBarry Smith 11055b7f0c42SBarry Smith @*/ 110663dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetBase(Mat J,Vec U) 11071d1367b7SBarry Smith { 1108dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,Vec); 11091d1367b7SBarry Smith 11101d1367b7SBarry Smith PetscFunctionBegin; 11114482741eSBarry Smith PetscValidHeaderSpecific(J,MAT_COOKIE,1); 11124482741eSBarry Smith PetscValidHeaderSpecific(U,VEC_COOKIE,2); 1113c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)J,"MatSNESMFSetBase_C",(void (**)(void))&f);CHKERRQ(ierr); 1114cf3bea43SBarry Smith if (f) { 1115cf3bea43SBarry Smith ierr = (*f)(J,U);CHKERRQ(ierr); 111649d4803aSBarry Smith } 11171d1367b7SBarry Smith PetscFunctionReturn(0); 11181d1367b7SBarry Smith } 1119cf57b110SBarry Smith 11205b7f0c42SBarry Smith #undef __FUNCT__ 11215b7f0c42SBarry Smith #define __FUNCT__ "MatSNESMFSetCheckh" 112261860be5SBarry Smith /*@C 11235b7f0c42SBarry Smith MatSNESMFSetCheckh - Sets a function that checks the computed h and adjusts 11245b7f0c42SBarry Smith it to satisfy some criteria 1125cf57b110SBarry Smith 11265b7f0c42SBarry Smith Collective on Mat 11275b7f0c42SBarry Smith 11285b7f0c42SBarry Smith Input Parameters: 11295b7f0c42SBarry Smith + J - the MatSNESMF matrix 11305b7f0c42SBarry Smith . fun - the function that checks h 11315b7f0c42SBarry Smith - ctx - any context needed by the function 11325b7f0c42SBarry Smith 11335b7f0c42SBarry Smith Options Database Keys: 11345b7f0c42SBarry Smith . -snes_mf_check_positivity 11355b7f0c42SBarry Smith 11365b7f0c42SBarry Smith Level: advanced 11375b7f0c42SBarry Smith 11385b7f0c42SBarry Smith Notes: For example, MatSNESMFSetCheckPositivity() insures that all entries 11395b7f0c42SBarry Smith of U + h*a are non-negative 11405b7f0c42SBarry Smith 11415b7f0c42SBarry Smith .seealso: MatSNESMFSetCheckPositivity() 11425b7f0c42SBarry Smith @*/ 114363dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetCheckh(Mat J,PetscErrorCode (*fun)(Vec,Vec,PetscScalar*,void*),void* ctx) 11445b7f0c42SBarry Smith { 11456849ba73SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscErrorCode (*)(Vec,Vec,PetscScalar*,void*),void*); 11465b7f0c42SBarry Smith 11475b7f0c42SBarry Smith PetscFunctionBegin; 11484482741eSBarry Smith PetscValidHeaderSpecific(J,MAT_COOKIE,1); 11495b7f0c42SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)J,"MatSNESMFSetCheckh_C",(void (**)(void))&f);CHKERRQ(ierr); 11505b7f0c42SBarry Smith if (f) { 11515b7f0c42SBarry Smith ierr = (*f)(J,fun,ctx);CHKERRQ(ierr); 11525b7f0c42SBarry Smith } 11535b7f0c42SBarry Smith PetscFunctionReturn(0); 11545b7f0c42SBarry Smith } 11555b7f0c42SBarry Smith 11565b7f0c42SBarry Smith #undef __FUNCT__ 11575b7f0c42SBarry Smith #define __FUNCT__ "MatSNESMFSetCheckPositivity" 11585b7f0c42SBarry Smith /*@ 11595b7f0c42SBarry Smith MatSNESMFCheckPositivity - Checks that all entries in U + h*a are positive or 11605b7f0c42SBarry Smith zero, decreases h until this is satisfied. 11615b7f0c42SBarry Smith 11625b7f0c42SBarry Smith Collective on Vec 11635b7f0c42SBarry Smith 11645b7f0c42SBarry Smith Input Parameters: 11655b7f0c42SBarry Smith + U - base vector that is added to 11665b7f0c42SBarry Smith . a - vector that is added 11675b7f0c42SBarry Smith . h - scaling factor on a 11685b7f0c42SBarry Smith - dummy - context variable (unused) 11695b7f0c42SBarry Smith 11705b7f0c42SBarry Smith Options Database Keys: 11715b7f0c42SBarry Smith . -snes_mf_check_positivity 11725b7f0c42SBarry Smith 11735b7f0c42SBarry Smith Level: advanced 11745b7f0c42SBarry Smith 11755b7f0c42SBarry Smith Notes: This is rarely used directly, rather it is passed as an argument to 11765b7f0c42SBarry Smith MatSNESMFSetCheckh() 11775b7f0c42SBarry Smith 11785b7f0c42SBarry Smith .seealso: MatSNESMFSetCheckh() 11795b7f0c42SBarry Smith @*/ 118063dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFCheckPositivity(Vec U,Vec a,PetscScalar *h,void *dummy) 11815b7f0c42SBarry Smith { 11825b7f0c42SBarry Smith PetscReal val, minval; 11835b7f0c42SBarry Smith PetscScalar *u_vec, *a_vec; 1184dfbe8321SBarry Smith PetscErrorCode ierr; 1185a7cc72afSBarry Smith PetscInt i,n; 11865b7f0c42SBarry Smith MPI_Comm comm; 11875b7f0c42SBarry Smith 11885b7f0c42SBarry Smith PetscFunctionBegin; 11895b7f0c42SBarry Smith ierr = PetscObjectGetComm((PetscObject)U,&comm);CHKERRQ(ierr); 11905b7f0c42SBarry Smith ierr = VecGetArray(U,&u_vec);CHKERRQ(ierr); 11915b7f0c42SBarry Smith ierr = VecGetArray(a,&a_vec);CHKERRQ(ierr); 1192a7cc72afSBarry Smith ierr = VecGetLocalSize(U,&n);CHKERRQ(ierr); 119361860be5SBarry Smith minval = PetscAbsScalar(*h*1.01); 1194a7cc72afSBarry Smith for(i=0;i<n;i++) { 119561860be5SBarry Smith if (PetscRealPart(u_vec[i] + *h*a_vec[i]) <= 0.0) { 119661860be5SBarry Smith val = PetscAbsScalar(u_vec[i]/a_vec[i]); 11975b7f0c42SBarry Smith if (val < minval) minval = val; 11985b7f0c42SBarry Smith } 11995b7f0c42SBarry Smith } 12005b7f0c42SBarry Smith ierr = VecRestoreArray(U,&u_vec);CHKERRQ(ierr); 12015b7f0c42SBarry Smith ierr = VecRestoreArray(a,&a_vec);CHKERRQ(ierr); 12025b7f0c42SBarry Smith ierr = PetscGlobalMin(&minval,&val,comm);CHKERRQ(ierr); 120361860be5SBarry Smith if (val <= PetscAbsScalar(*h)) { 1204ae15b995SBarry Smith ierr = PetscInfo2(U,"Scaling back h from %G to %G\n",PetscRealPart(*h),.99*val);CHKERRQ(ierr); 120561860be5SBarry Smith if (PetscRealPart(*h) > 0.0) *h = 0.99*val; 12065b7f0c42SBarry Smith else *h = -0.99*val; 12075b7f0c42SBarry Smith } 12085b7f0c42SBarry Smith PetscFunctionReturn(0); 12095b7f0c42SBarry Smith } 1210cf57b110SBarry Smith 1211cf57b110SBarry Smith 1212cf57b110SBarry Smith 1213cf57b110SBarry Smith 1214cf57b110SBarry Smith 1215cf57b110SBarry Smith 1216cf57b110SBarry Smith 1217