163dd3a1aSKris Buschelman #define PETSCSNES_DLL 281e6777dSBarry Smith 3*b9147fbbSdalcinl #include "include/private/matimpl.h" 4325e03aeSBarry Smith #include "src/snes/mf/snesmfj.h" /*I "petscsnes.h" I*/ 581e6777dSBarry Smith 6b0a32e0cSBarry Smith PetscFList MatSNESMPetscFList = 0; 74c49b128SBarry Smith PetscTruth MatSNESMFRegisterAllCalled = PETSC_FALSE; 8a4d4d686SBarry Smith 963dd3a1aSKris Buschelman PetscCookie PETSCSNES_DLLEXPORT MATSNESMFCTX_COOKIE = 0; 1046129b97SKris Buschelman PetscEvent MATSNESMF_Mult = 0; 1146129b97SKris Buschelman 124a2ae208SSatish Balay #undef __FUNCT__ 134a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetType" 14fd4bdd07SBarry Smith /*@C 1565f2ba5bSLois Curfman McInnes MatSNESMFSetType - Sets the method that is used to compute the 16b0a32e0cSBarry Smith differencing parameter for finite differene matrix-free formulations. 179a6cb015SBarry Smith 189a6cb015SBarry Smith Input Parameters: 197e9d5209SBarry Smith + mat - the "matrix-free" matrix created via MatCreateSNESMF(), or MatCreateMF() 207e9d5209SBarry Smith or MatSetType(mat,MATMFFD); 21efb30889SBarry Smith - ftype - the type requested, either MATSNESMF_WP or MATSNESMF_DS 229a6cb015SBarry Smith 2315091d37SBarry Smith Level: advanced 2415091d37SBarry Smith 2565f2ba5bSLois Curfman McInnes Notes: 2665f2ba5bSLois Curfman McInnes For example, such routines can compute h for use in 2765f2ba5bSLois Curfman McInnes Jacobian-vector products of the form 2865f2ba5bSLois Curfman McInnes 2965f2ba5bSLois Curfman McInnes F(x+ha) - F(x) 30ef4ad1fdSLois Curfman McInnes F'(u)a ~= ---------------- 3165f2ba5bSLois Curfman McInnes h 3265f2ba5bSLois Curfman McInnes 33f1af5d2fSBarry Smith .seealso: MatCreateSNESMF(), MatSNESMFRegisterDynamic) 349a6cb015SBarry Smith @*/ 3563dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetType(Mat mat,const MatSNESMFType ftype) 36b9fa9cd0SBarry Smith { 37dfbe8321SBarry Smith PetscErrorCode ierr,(*r)(MatSNESMFCtx); 387e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 396831982aSBarry Smith PetscTruth match; 40a4d4d686SBarry Smith 41a4d4d686SBarry Smith PetscFunctionBegin; 424482741eSBarry Smith PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 434482741eSBarry Smith PetscValidCharPointer(ftype,2); 440f5bd95cSBarry Smith 459a6cb015SBarry Smith /* already set, so just return */ 466831982aSBarry Smith ierr = PetscTypeCompare((PetscObject)ctx,ftype,&match);CHKERRQ(ierr); 470f5bd95cSBarry Smith if (match) PetscFunctionReturn(0); 48a4d4d686SBarry Smith 499a6cb015SBarry Smith /* destroy the old one if it exists */ 509a6cb015SBarry Smith if (ctx->ops->destroy) { 519a6cb015SBarry Smith ierr = (*ctx->ops->destroy)(ctx);CHKERRQ(ierr); 529a6cb015SBarry Smith } 539a6cb015SBarry Smith 5465f2ba5bSLois Curfman McInnes /* Get the function pointers for the requrested method */ 555a655dc6SBarry Smith if (!MatSNESMFRegisterAllCalled) {ierr = MatSNESMFRegisterAll(PETSC_NULL);CHKERRQ(ierr);} 56b9617806SBarry Smith ierr = PetscFListFind(ctx->comm,MatSNESMPetscFList,ftype,(void (**)(void)) &r);CHKERRQ(ierr); 57958c9bccSBarry Smith if (!r) SETERRQ1(PETSC_ERR_ARG_UNKNOWN_TYPE,"Unknown MatSNESMF type %s given",ftype); 589a6cb015SBarry Smith ierr = (*r)(ctx);CHKERRQ(ierr); 596831982aSBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)ctx,ftype);CHKERRQ(ierr); 609a6cb015SBarry Smith PetscFunctionReturn(0); 619a6cb015SBarry Smith } 629a6cb015SBarry Smith 636849ba73SBarry Smith typedef PetscErrorCode (*FCN1)(Vec,void*); /* force argument to next function to not be extern C*/ 64c5c390f1SBarry Smith EXTERN_C_BEGIN 6587828ca2SBarry Smith #undef __FUNCT__ 6687828ca2SBarry Smith #define __FUNCT__ "MatSNESMFSetFunctioniBase_FD" 6763dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunctioniBase_FD(Mat mat,FCN1 func) 6887828ca2SBarry Smith { 6987828ca2SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 7087828ca2SBarry Smith 7187828ca2SBarry Smith PetscFunctionBegin; 7287828ca2SBarry Smith ctx->funcisetbase = func; 7387828ca2SBarry Smith PetscFunctionReturn(0); 7487828ca2SBarry Smith } 75c5c390f1SBarry Smith EXTERN_C_END 7687828ca2SBarry Smith 77a7cc72afSBarry Smith typedef PetscErrorCode (*FCN2)(PetscInt,Vec,PetscScalar*,void*); /* force argument to next function to not be extern C*/ 78c5c390f1SBarry Smith EXTERN_C_BEGIN 7987828ca2SBarry Smith #undef __FUNCT__ 8087828ca2SBarry Smith #define __FUNCT__ "MatSNESMFSetFunctioni_FD" 8163dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunctioni_FD(Mat mat,FCN2 funci) 8287828ca2SBarry Smith { 8387828ca2SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 8487828ca2SBarry Smith 8587828ca2SBarry Smith PetscFunctionBegin; 8687828ca2SBarry Smith ctx->funci = funci; 8787828ca2SBarry Smith PetscFunctionReturn(0); 8887828ca2SBarry Smith } 89c5c390f1SBarry Smith EXTERN_C_END 9087828ca2SBarry Smith 919a6cb015SBarry Smith 924a2ae208SSatish Balay #undef __FUNCT__ 934a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFRegister" 9463dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFRegister(const char sname[],const char path[],const char name[],PetscErrorCode (*function)(MatSNESMFCtx)) 959a6cb015SBarry Smith { 96dfbe8321SBarry Smith PetscErrorCode ierr; 97e2d1d2b7SBarry Smith char fullname[PETSC_MAX_PATH_LEN]; 989a6cb015SBarry Smith 999a6cb015SBarry Smith PetscFunctionBegin; 100b0a32e0cSBarry Smith ierr = PetscFListConcat(path,name,fullname);CHKERRQ(ierr); 101c134de8dSSatish Balay ierr = PetscFListAdd(&MatSNESMPetscFList,sname,fullname,(void (*)(void))function);CHKERRQ(ierr); 1029a6cb015SBarry Smith PetscFunctionReturn(0); 1039a6cb015SBarry Smith } 1049a6cb015SBarry Smith 1059a6cb015SBarry Smith 1064a2ae208SSatish Balay #undef __FUNCT__ 1074a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFRegisterDestroy" 1089a6cb015SBarry Smith /*@C 1095a655dc6SBarry Smith MatSNESMFRegisterDestroy - Frees the list of MatSNESMF methods that were 110f1af5d2fSBarry Smith registered by MatSNESMFRegisterDynamic). 1119a6cb015SBarry Smith 1129a6cb015SBarry Smith Not Collective 1139a6cb015SBarry Smith 11415091d37SBarry Smith Level: developer 11515091d37SBarry Smith 1165a655dc6SBarry Smith .keywords: MatSNESMF, register, destroy 1179a6cb015SBarry Smith 118f1af5d2fSBarry Smith .seealso: MatSNESMFRegisterDynamic), MatSNESMFRegisterAll() 1199a6cb015SBarry Smith @*/ 12063dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFRegisterDestroy(void) 1219a6cb015SBarry Smith { 122dfbe8321SBarry Smith PetscErrorCode ierr; 1239a6cb015SBarry Smith 1249a6cb015SBarry Smith PetscFunctionBegin; 125b0a32e0cSBarry Smith if (MatSNESMPetscFList) { 126b0a32e0cSBarry Smith ierr = PetscFListDestroy(&MatSNESMPetscFList);CHKERRQ(ierr); 127b0a32e0cSBarry Smith MatSNESMPetscFList = 0; 1289a6cb015SBarry Smith } 1294c49b128SBarry Smith MatSNESMFRegisterAllCalled = PETSC_FALSE; 1309a6cb015SBarry Smith PetscFunctionReturn(0); 1319a6cb015SBarry Smith } 1329a6cb015SBarry Smith 1339a6cb015SBarry Smith /* ----------------------------------------------------------------------------------------*/ 1344a2ae208SSatish Balay #undef __FUNCT__ 1358a124369SBarry Smith #define __FUNCT__ "MatDestroy_MFFD" 136dfbe8321SBarry Smith PetscErrorCode MatDestroy_MFFD(Mat mat) 137a4d4d686SBarry Smith { 138dfbe8321SBarry Smith PetscErrorCode ierr; 1397e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 140fae171e0SBarry Smith 1413a40ed3dSBarry Smith PetscFunctionBegin; 142abc0a331SBarry Smith if (ctx->w) { 143b9fa9cd0SBarry Smith ierr = VecDestroy(ctx->w);CHKERRQ(ierr); 144ba6a83e5SMatthew Knepley } 1459a6cb015SBarry Smith if (ctx->ops->destroy) {ierr = (*ctx->ops->destroy)(ctx);CHKERRQ(ierr);} 14674637425SBarry Smith if (ctx->sp) {ierr = MatNullSpaceDestroy(ctx->sp);CHKERRQ(ierr);} 147d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(ctx);CHKERRQ(ierr); 148901853e0SKris Buschelman 149901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSNESMFSetBase_C","",PETSC_NULL);CHKERRQ(ierr); 150901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSNESMFSetFunctioniBase_C","",PETSC_NULL);CHKERRQ(ierr); 151901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSNESMFSetFunctioni_C","",PETSC_NULL);CHKERRQ(ierr); 152901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSNESMFSetCheckh_C","",PETSC_NULL);CHKERRQ(ierr); 153901853e0SKris Buschelman 1543a40ed3dSBarry Smith PetscFunctionReturn(0); 155b9fa9cd0SBarry Smith } 15650361f65SLois Curfman McInnes 1574a2ae208SSatish Balay #undef __FUNCT__ 1588a124369SBarry Smith #define __FUNCT__ "MatView_MFFD" 15939e2f89bSBarry Smith /* 1608a124369SBarry Smith MatSNESMFView_MFFD - Views matrix-free parameters. 1618f6e3e37SBarry Smith 16239e2f89bSBarry Smith */ 163dfbe8321SBarry Smith PetscErrorCode MatView_MFFD(Mat J,PetscViewer viewer) 164eb9086c3SLois Curfman McInnes { 165dfbe8321SBarry Smith PetscErrorCode ierr; 1667e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 16732077d6dSBarry Smith PetscTruth iascii; 168eb9086c3SLois Curfman McInnes 1693a40ed3dSBarry Smith PetscFunctionBegin; 17032077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 17132077d6dSBarry Smith if (iascii) { 172b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," SNES matrix-free approximation:\n");CHKERRQ(ierr); 173a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," err=%G (relative error in function evaluation)\n",ctx->error_rel);CHKERRQ(ierr); 174473c83c3SBarry Smith if (!ctx->type_name) { 175b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," The compute h routine has not yet been set\n");CHKERRQ(ierr); 176473c83c3SBarry Smith } else { 177b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Using %s compute h routine\n",ctx->type_name);CHKERRQ(ierr); 178473c83c3SBarry Smith } 1799a6cb015SBarry Smith if (ctx->ops->view) { 1809a6cb015SBarry Smith ierr = (*ctx->ops->view)(ctx,viewer);CHKERRQ(ierr); 1819a6cb015SBarry Smith } 1825cd90555SBarry Smith } else { 18379a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported for SNES matrix free matrix",((PetscObject)viewer)->type_name); 184eb9086c3SLois Curfman McInnes } 1853a40ed3dSBarry Smith PetscFunctionReturn(0); 186eb9086c3SLois Curfman McInnes } 187eb9086c3SLois Curfman McInnes 1884a2ae208SSatish Balay #undef __FUNCT__ 1898a124369SBarry Smith #define __FUNCT__ "MatAssemblyEnd_MFFD" 190be726c96SBarry Smith /* 19132dfb669SBarry Smith MatAssemblyEnd_MFFD - Resets the ctx->ncurrenth to zero. This 19265f2ba5bSLois Curfman McInnes allows the user to indicate the beginning of a new linear solve by calling 193be726c96SBarry Smith MatAssemblyXXX() on the matrix free matrix. This then allows the 19465f2ba5bSLois Curfman McInnes MatSNESMFCreate_WP() to properly compute ||U|| only the first time 19565f2ba5bSLois Curfman McInnes in the linear solver rather than every time. 196be726c96SBarry Smith */ 197dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MFFD(Mat J,MatAssemblyType mt) 198be726c96SBarry Smith { 199dfbe8321SBarry Smith PetscErrorCode ierr; 2007e9d5209SBarry Smith MatSNESMFCtx j = (MatSNESMFCtx)J->data; 201be726c96SBarry Smith 202be726c96SBarry Smith PetscFunctionBegin; 2035a655dc6SBarry Smith ierr = MatSNESMFResetHHistory(J);CHKERRQ(ierr); 204b0a32e0cSBarry Smith if (j->usesnes) { 2051d1367b7SBarry Smith ierr = SNESGetSolution(j->snes,&j->current_u);CHKERRQ(ierr); 2061d1367b7SBarry Smith ierr = SNESGetFunction(j->snes,&j->current_f,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr); 207958c9bccSBarry Smith if (!j->w) { 2082740c1caSMatthew Knepley ierr = VecDuplicate(j->current_u, &j->w);CHKERRQ(ierr); 2092740c1caSMatthew Knepley } 2101d1367b7SBarry Smith } 211c5c390f1SBarry Smith j->vshift = 0.0; 212c5c390f1SBarry Smith j->vscale = 1.0; 213be726c96SBarry Smith PetscFunctionReturn(0); 214be726c96SBarry Smith } 215be726c96SBarry Smith 2164a2ae208SSatish Balay #undef __FUNCT__ 2178a124369SBarry Smith #define __FUNCT__ "MatMult_MFFD" 218eb9086c3SLois Curfman McInnes /* 219adb62b0dSMatthew Knepley MatMult_MFFD - Default matrix-free form for Jacobian-vector product, y = F'(u)*a: 220a4d4d686SBarry Smith 2219a6cb015SBarry Smith y ~= (F(u + ha) - F(u))/h, 222eb9086c3SLois Curfman McInnes where F = nonlinear function, as set by SNESSetFunction() 223eb9086c3SLois Curfman McInnes u = current iterate 224eb9086c3SLois Curfman McInnes h = difference interval 225eb9086c3SLois Curfman McInnes */ 226dfbe8321SBarry Smith PetscErrorCode MatMult_MFFD(Mat mat,Vec a,Vec y) 22739e2f89bSBarry Smith { 2287e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 229fae171e0SBarry Smith SNES snes; 230efb30889SBarry Smith PetscScalar h; 231fae171e0SBarry Smith Vec w,U,F; 232dfbe8321SBarry Smith PetscErrorCode ierr,(*eval_fct)(SNES,Vec,Vec)=0; 2334dc4c822SBarry Smith PetscTruth zeroa; 23439e2f89bSBarry Smith 2353a40ed3dSBarry Smith PetscFunctionBegin; 2369a6cb015SBarry Smith /* We log matrix-free matrix-vector products separately, so that we can 2379a6cb015SBarry Smith separate the performance monitoring from the cases that use conventional 2389a6cb015SBarry Smith storage. We may eventually modify event logging to associate events 2399a6cb015SBarry Smith with particular objects, hence alleviating the more general problem. */ 24046129b97SKris Buschelman ierr = PetscLogEventBegin(MATSNESMF_Mult,a,y,0,0);CHKERRQ(ierr); 24156cd22aeSBarry Smith 242fae171e0SBarry Smith snes = ctx->snes; 243fae171e0SBarry Smith w = ctx->w; 2441d1367b7SBarry Smith U = ctx->current_u; 24550361f65SLois Curfman McInnes 24685614651SBarry Smith /* 24785614651SBarry Smith Compute differencing parameter 24885614651SBarry Smith */ 2499a6cb015SBarry Smith if (!ctx->ops->compute) { 2502f859189SBarry Smith ierr = MatSNESMFSetType(mat,MATSNESMF_WP);CHKERRQ(ierr); 2515a655dc6SBarry Smith ierr = MatSNESMFSetFromOptions(mat);CHKERRQ(ierr); 2529a6cb015SBarry Smith } 2534dc4c822SBarry Smith ierr = (*ctx->ops->compute)(ctx,U,a,&h,&zeroa);CHKERRQ(ierr); 2544dc4c822SBarry Smith if (zeroa) { 25519bdad02SBarry Smith ierr = VecSet(y,0.0);CHKERRQ(ierr); 2564dc4c822SBarry Smith PetscFunctionReturn(0); 2574dc4c822SBarry Smith } 258a4d4d686SBarry Smith 2595b7f0c42SBarry Smith if (ctx->checkh) { 2605b7f0c42SBarry Smith ierr = (*ctx->checkh)(U,a,&h,ctx->checkhctx);CHKERRQ(ierr); 2615b7f0c42SBarry Smith } 2625b7f0c42SBarry Smith 263a4d4d686SBarry Smith /* keep a record of the current differencing parameter h */ 264a4d4d686SBarry Smith ctx->currenth = h; 265aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 266ae15b995SBarry Smith ierr = PetscInfo2(mat,"Current differencing parameter: %G + %G i\n",PetscRealPart(h),PetscImaginaryPart(h));CHKERRQ(ierr); 267a4d4d686SBarry Smith #else 268ae15b995SBarry Smith ierr = PetscInfo1(mat,"Current differencing parameter: %15.12e\n",h);CHKERRQ(ierr); 269a4d4d686SBarry Smith #endif 270a4d4d686SBarry Smith if (ctx->historyh && ctx->ncurrenth < ctx->maxcurrenth) { 27185614651SBarry Smith ctx->historyh[ctx->ncurrenth] = h; 272a4d4d686SBarry Smith } 27385614651SBarry Smith ctx->ncurrenth++; 274a4d4d686SBarry Smith 27585614651SBarry Smith /* w = u + ha */ 2762dcb1b2aSMatthew Knepley ierr = VecWAXPY(w,h,a,U);CHKERRQ(ierr); 27785614651SBarry Smith 278b0a32e0cSBarry Smith if (ctx->usesnes) { 27985614651SBarry Smith eval_fct = SNESComputeFunction; 2801d1367b7SBarry Smith F = ctx->current_f; 2811302d50aSBarry Smith if (!F) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"You must call MatAssembly() even on matrix-free matrices"); 28239903ad8SBarry Smith ierr = (*eval_fct)(snes,w,y);CHKERRQ(ierr); 28385614651SBarry Smith } else { 28485614651SBarry Smith F = ctx->funcvec; 28585614651SBarry Smith /* compute func(U) as base for differencing */ 28685614651SBarry Smith if (ctx->ncurrenth == 1) { 28785614651SBarry Smith ierr = (*ctx->func)(snes,U,F,ctx->funcctx);CHKERRQ(ierr); 28885614651SBarry Smith } 28985614651SBarry Smith ierr = (*ctx->func)(snes,w,y,ctx->funcctx);CHKERRQ(ierr); 29085614651SBarry Smith } 291a4d4d686SBarry Smith 292efb30889SBarry Smith ierr = VecAXPY(y,-1.0,F);CHKERRQ(ierr); 293efb30889SBarry Smith ierr = VecScale(y,1.0/h);CHKERRQ(ierr); 294c5c390f1SBarry Smith 2952dcb1b2aSMatthew Knepley ierr = VecAXPBY(y,ctx->vshift,ctx->vscale,a);CHKERRQ(ierr); 296c5c390f1SBarry Smith 29774637425SBarry Smith if (ctx->sp) {ierr = MatNullSpaceRemove(ctx->sp,y,PETSC_NULL);CHKERRQ(ierr);} 298a4d4d686SBarry Smith 29946129b97SKris Buschelman ierr = PetscLogEventEnd(MATSNESMF_Mult,a,y,0,0);CHKERRQ(ierr); 300a4d4d686SBarry Smith PetscFunctionReturn(0); 301a4d4d686SBarry Smith } 302a4d4d686SBarry Smith 3034a2ae208SSatish Balay #undef __FUNCT__ 3048a124369SBarry Smith #define __FUNCT__ "MatGetDiagonal_MFFD" 305cf57b110SBarry Smith /* 3068a124369SBarry Smith MatGetDiagonal_MFFD - Gets the diagonal for a matrix free matrix 307cf57b110SBarry Smith 308cf57b110SBarry Smith y ~= (F(u + ha) - F(u))/h, 309cf57b110SBarry Smith where F = nonlinear function, as set by SNESSetFunction() 310cf57b110SBarry Smith u = current iterate 311cf57b110SBarry Smith h = difference interval 312cf57b110SBarry Smith */ 313dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MFFD(Mat mat,Vec a) 314cf57b110SBarry Smith { 3157e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 316ea709b57SSatish Balay PetscScalar h,*aa,*ww,v; 31777d8c4bbSBarry Smith PetscReal epsilon = PETSC_SQRT_MACHINE_EPSILON,umin = 100.0*PETSC_SQRT_MACHINE_EPSILON; 31865df01d8SBarry Smith Vec w,U; 3196849ba73SBarry Smith PetscErrorCode ierr; 320a7cc72afSBarry Smith PetscInt i,rstart,rend; 321cf57b110SBarry Smith 322cf57b110SBarry Smith PetscFunctionBegin; 323cf57b110SBarry Smith if (!ctx->funci) { 3241302d50aSBarry Smith SETERRQ(PETSC_ERR_ORDER,"Requires calling MatSNESMFSetFunctioni() first"); 325cf57b110SBarry Smith } 326cf57b110SBarry Smith 327cf57b110SBarry Smith w = ctx->w; 328cf57b110SBarry Smith U = ctx->current_u; 329cf57b110SBarry Smith ierr = (*ctx->func)(0,U,a,ctx->funcctx);CHKERRQ(ierr); 330cf57b110SBarry Smith ierr = (*ctx->funcisetbase)(U,ctx->funcctx);CHKERRQ(ierr); 331cf57b110SBarry Smith ierr = VecCopy(U,w);CHKERRQ(ierr); 332cf57b110SBarry Smith 333cf57b110SBarry Smith ierr = VecGetOwnershipRange(a,&rstart,&rend);CHKERRQ(ierr); 334cf57b110SBarry Smith ierr = VecGetArray(a,&aa);CHKERRQ(ierr); 335cf57b110SBarry Smith for (i=rstart; i<rend; i++) { 336cf57b110SBarry Smith ierr = VecGetArray(w,&ww);CHKERRQ(ierr); 337cf57b110SBarry Smith h = ww[i-rstart]; 338cf57b110SBarry Smith if (h == 0.0) h = 1.0; 339cf57b110SBarry Smith #if !defined(PETSC_USE_COMPLEX) 340cf57b110SBarry Smith if (h < umin && h >= 0.0) h = umin; 341cf57b110SBarry Smith else if (h < 0.0 && h > -umin) h = -umin; 342cf57b110SBarry Smith #else 343cf57b110SBarry Smith if (PetscAbsScalar(h) < umin && PetscRealPart(h) >= 0.0) h = umin; 344cf57b110SBarry Smith else if (PetscRealPart(h) < 0.0 && PetscAbsScalar(h) < umin) h = -umin; 345cf57b110SBarry Smith #endif 346cf57b110SBarry Smith h *= epsilon; 347cf57b110SBarry Smith 348cf57b110SBarry Smith ww[i-rstart] += h; 349cf57b110SBarry Smith ierr = VecRestoreArray(w,&ww);CHKERRQ(ierr); 350cf57b110SBarry Smith ierr = (*ctx->funci)(i,w,&v,ctx->funcctx);CHKERRQ(ierr); 351cf57b110SBarry Smith aa[i-rstart] = (v - aa[i-rstart])/h; 352c5c390f1SBarry Smith 353c5c390f1SBarry Smith /* possibly shift and scale result */ 354c5c390f1SBarry Smith aa[i - rstart] = ctx->vshift + ctx->vscale*aa[i-rstart]; 355c5c390f1SBarry Smith 356cf57b110SBarry Smith ierr = VecGetArray(w,&ww);CHKERRQ(ierr); 357cf57b110SBarry Smith ww[i-rstart] -= h; 358cf57b110SBarry Smith ierr = VecRestoreArray(w,&ww);CHKERRQ(ierr); 359cf57b110SBarry Smith } 360cf57b110SBarry Smith ierr = VecRestoreArray(a,&aa);CHKERRQ(ierr); 361cf57b110SBarry Smith PetscFunctionReturn(0); 362cf57b110SBarry Smith } 363cf57b110SBarry Smith 364cf57b110SBarry Smith #undef __FUNCT__ 365c5c390f1SBarry Smith #define __FUNCT__ "MatShift_MFFD" 366f4df32b1SMatthew Knepley PetscErrorCode MatShift_MFFD(Mat Y,PetscScalar a) 367c5c390f1SBarry Smith { 368c5c390f1SBarry Smith MatSNESMFCtx shell = (MatSNESMFCtx)Y->data; 369c5c390f1SBarry Smith PetscFunctionBegin; 370f4df32b1SMatthew Knepley shell->vshift += a; 371c5c390f1SBarry Smith PetscFunctionReturn(0); 372c5c390f1SBarry Smith } 373c5c390f1SBarry Smith 374c5c390f1SBarry Smith #undef __FUNCT__ 375c5c390f1SBarry Smith #define __FUNCT__ "MatScale_MFFD" 376f4df32b1SMatthew Knepley PetscErrorCode MatScale_MFFD(Mat Y,PetscScalar a) 377c5c390f1SBarry Smith { 378c5c390f1SBarry Smith MatSNESMFCtx shell = (MatSNESMFCtx)Y->data; 379c5c390f1SBarry Smith PetscFunctionBegin; 380f4df32b1SMatthew Knepley shell->vscale *= a; 381c5c390f1SBarry Smith PetscFunctionReturn(0); 382c5c390f1SBarry Smith } 383c5c390f1SBarry Smith 384c5c390f1SBarry Smith 385c5c390f1SBarry Smith #undef __FUNCT__ 3864a2ae208SSatish Balay #define __FUNCT__ "MatCreateSNESMF" 38752baeb72SSatish Balay /*@ 38865f2ba5bSLois Curfman McInnes MatCreateSNESMF - Creates a matrix-free matrix context for use with 38965f2ba5bSLois Curfman McInnes a SNES solver. This matrix can be used as the Jacobian argument for 39065f2ba5bSLois Curfman McInnes the routine SNESSetJacobian(). 391a4d4d686SBarry Smith 392a4d4d686SBarry Smith Collective on SNES and Vec 393a4d4d686SBarry Smith 394a4d4d686SBarry Smith Input Parameters: 395a4d4d686SBarry Smith + snes - the SNES context 396a4d4d686SBarry Smith - x - vector where SNES solution is to be stored. 397a4d4d686SBarry Smith 398a4d4d686SBarry Smith Output Parameter: 399a4d4d686SBarry Smith . J - the matrix-free matrix 400a4d4d686SBarry Smith 40115091d37SBarry Smith Level: advanced 40215091d37SBarry Smith 403a4d4d686SBarry Smith Notes: 404a4d4d686SBarry Smith The matrix-free matrix context merely contains the function pointers 405a4d4d686SBarry Smith and work space for performing finite difference approximations of 40665f2ba5bSLois Curfman McInnes Jacobian-vector products, F'(u)*a, 4079a6cb015SBarry Smith 4089a6cb015SBarry Smith The default code uses the following approach to compute h 409a4d4d686SBarry Smith 410a4d4d686SBarry Smith .vb 41165f2ba5bSLois Curfman McInnes F'(u)*a = [F(u+h*a) - F(u)]/h where 412a4d4d686SBarry Smith h = error_rel*u'a/||a||^2 if |u'a| > umin*||a||_{1} 413a4d4d686SBarry Smith = error_rel*umin*sign(u'a)*||a||_{1}/||a||^2 otherwise 414a4d4d686SBarry Smith where 415a4d4d686SBarry Smith error_rel = square root of relative error in function evaluation 416a4d4d686SBarry Smith umin = minimum iterate parameter 417a4d4d686SBarry Smith .ve 418efb30889SBarry Smith (see MATSNESMF_WP or MATSNESMF_DS) 419a4d4d686SBarry Smith 4205a655dc6SBarry Smith The user can set the error_rel via MatSNESMFSetFunctionError() and 42165f2ba5bSLois Curfman McInnes umin via MatSNESMFDefaultSetUmin(); see the nonlinear solvers chapter 42265f2ba5bSLois Curfman McInnes of the users manual for details. 423a4d4d686SBarry Smith 424a4d4d686SBarry Smith The user should call MatDestroy() when finished with the matrix-free 425a4d4d686SBarry Smith matrix context. 426a4d4d686SBarry Smith 427a4d4d686SBarry Smith Options Database Keys: 428a4d4d686SBarry Smith + -snes_mf_err <error_rel> - Sets error_rel 429efb30889SBarry Smith + -snes_mf_type - wp or ds (see MATSNESMF_WP or MATSNESMF_DS) 4309a6cb015SBarry Smith . -snes_mf_unim <umin> - Sets umin (for default PETSc routine that computes h only) 431a4d4d686SBarry Smith - -snes_mf_ksp_monitor - KSP monitor routine that prints differencing h 432a4d4d686SBarry Smith 433a4d4d686SBarry Smith .keywords: SNES, default, matrix-free, create, matrix 434a4d4d686SBarry Smith 4355a655dc6SBarry Smith .seealso: MatDestroy(), MatSNESMFSetFunctionError(), MatSNESMFDefaultSetUmin() 4361d1367b7SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), MatCreateMF(), 437fed8bd04SBarry Smith MatSNESMFGetH(),MatSNESMFKSPMonitor(), MatSNESMFRegisterDynamic), MatSNESMFComputeJacobian() 438a4d4d686SBarry Smith 439a4d4d686SBarry Smith @*/ 44063dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatCreateSNESMF(SNES snes,Vec x,Mat *J) 441a4d4d686SBarry Smith { 4421d1367b7SBarry Smith MatSNESMFCtx mfctx; 443dfbe8321SBarry Smith PetscErrorCode ierr; 4441d1367b7SBarry Smith 4451d1367b7SBarry Smith PetscFunctionBegin; 4461d1367b7SBarry Smith ierr = MatCreateMF(x,J);CHKERRQ(ierr); 4477e9d5209SBarry Smith 4487e9d5209SBarry Smith mfctx = (MatSNESMFCtx)(*J)->data; 4491d1367b7SBarry Smith mfctx->snes = snes; 450b0a32e0cSBarry Smith mfctx->usesnes = PETSC_TRUE; 45152e6d16bSBarry Smith ierr = PetscLogObjectParent(snes,*J);CHKERRQ(ierr); 4521d1367b7SBarry Smith PetscFunctionReturn(0); 4531d1367b7SBarry Smith } 4541d1367b7SBarry Smith 455cf3bea43SBarry Smith EXTERN_C_BEGIN 456cf3bea43SBarry Smith #undef __FUNCT__ 457cf3bea43SBarry Smith #define __FUNCT__ "MatSNESMFSetBase_FD" 45863dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetBase_FD(Mat J,Vec U) 459cf3bea43SBarry Smith { 460dfbe8321SBarry Smith PetscErrorCode ierr; 4617e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 462cf3bea43SBarry Smith 463cf3bea43SBarry Smith PetscFunctionBegin; 464cf3bea43SBarry Smith ierr = MatSNESMFResetHHistory(J);CHKERRQ(ierr); 465cf3bea43SBarry Smith ctx->current_u = U; 466cf3bea43SBarry Smith ctx->usesnes = PETSC_FALSE; 467958c9bccSBarry Smith if (!ctx->w) { 468ba6a83e5SMatthew Knepley ierr = VecDuplicate(ctx->current_u, &ctx->w);CHKERRQ(ierr); 469ba6a83e5SMatthew Knepley } 47032dfb669SBarry Smith J->assembled = PETSC_TRUE; 471cf3bea43SBarry Smith PetscFunctionReturn(0); 472cf3bea43SBarry Smith } 473cf3bea43SBarry Smith EXTERN_C_END 4746849ba73SBarry Smith typedef PetscErrorCode (*FCN3)(Vec,Vec,PetscScalar*,void*); /* force argument to next function to not be extern C*/ 4755b7f0c42SBarry Smith EXTERN_C_BEGIN 4765b7f0c42SBarry Smith #undef __FUNCT__ 4775b7f0c42SBarry Smith #define __FUNCT__ "MatSNESMFSetCheckh_FD" 47863dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetCheckh_FD(Mat J,FCN3 fun,void*ectx) 4795b7f0c42SBarry Smith { 4805b7f0c42SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 4815b7f0c42SBarry Smith 4825b7f0c42SBarry Smith PetscFunctionBegin; 4835b7f0c42SBarry Smith ctx->checkh = fun; 4845b7f0c42SBarry Smith ctx->checkhctx = ectx; 4855b7f0c42SBarry Smith PetscFunctionReturn(0); 4865b7f0c42SBarry Smith } 4875b7f0c42SBarry Smith EXTERN_C_END 4885b7f0c42SBarry Smith 4894a2ae208SSatish Balay #undef __FUNCT__ 4907e9d5209SBarry Smith #define __FUNCT__ "MatSNESMFSetFromOptions" 4917e9d5209SBarry Smith /*@ 4927e9d5209SBarry Smith MatSNESMFSetFromOptions - Sets the MatSNESMF options from the command line 4937e9d5209SBarry Smith parameter. 4947e9d5209SBarry Smith 4957e9d5209SBarry Smith Collective on Mat 4967e9d5209SBarry Smith 4977e9d5209SBarry Smith Input Parameters: 4987e9d5209SBarry Smith . mat - the matrix obtained with MatCreateSNESMF() 4997e9d5209SBarry Smith 5007e9d5209SBarry Smith Options Database Keys: 501efb30889SBarry Smith + -snes_mf_type - wp or ds (see MATSNESMF_WP or MATSNESMF_DS) 5027e9d5209SBarry Smith - -snes_mf_err - square root of estimated relative error in function evaluation 5037e9d5209SBarry Smith - -snes_mf_period - how often h is recomputed, defaults to 1, everytime 5047e9d5209SBarry Smith 5057e9d5209SBarry Smith Level: advanced 5067e9d5209SBarry Smith 5077e9d5209SBarry Smith .keywords: SNES, matrix-free, parameters 5087e9d5209SBarry Smith 5097e9d5209SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFSetHHistory(), 5107e9d5209SBarry Smith MatSNESMFResetHHistory(), MatSNESMFKSPMonitor() 5117e9d5209SBarry Smith @*/ 51263dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFromOptions(Mat mat) 5137e9d5209SBarry Smith { 5147e9d5209SBarry Smith MatSNESMFCtx mfctx = (MatSNESMFCtx)mat->data; 515dfbe8321SBarry Smith PetscErrorCode ierr; 5167e9d5209SBarry Smith PetscTruth flg; 5177e9d5209SBarry Smith char ftype[256]; 5187e9d5209SBarry Smith 5197e9d5209SBarry Smith PetscFunctionBegin; 5207e9d5209SBarry Smith if (!MatSNESMFRegisterAllCalled) {ierr = MatSNESMFRegisterAll(PETSC_NULL);CHKERRQ(ierr);} 5217e9d5209SBarry Smith 5227e9d5209SBarry Smith ierr = PetscOptionsBegin(mfctx->comm,mfctx->prefix,"Set matrix free computation parameters","MatSNESMF");CHKERRQ(ierr); 5237e9d5209SBarry Smith ierr = PetscOptionsList("-snes_mf_type","Matrix free type","MatSNESMFSetType",MatSNESMPetscFList,mfctx->type_name,ftype,256,&flg);CHKERRQ(ierr); 5247e9d5209SBarry Smith if (flg) { 5257e9d5209SBarry Smith ierr = MatSNESMFSetType(mat,ftype);CHKERRQ(ierr); 5267e9d5209SBarry Smith } 5277e9d5209SBarry Smith 52887828ca2SBarry Smith ierr = PetscOptionsReal("-snes_mf_err","set sqrt relative error in function","MatSNESMFSetFunctionError",mfctx->error_rel,&mfctx->error_rel,0);CHKERRQ(ierr); 5297e9d5209SBarry Smith ierr = PetscOptionsInt("-snes_mf_period","how often h is recomputed","MatSNESMFSetPeriod",mfctx->recomputeperiod,&mfctx->recomputeperiod,0);CHKERRQ(ierr); 5307e9d5209SBarry Smith if (mfctx->snes) { 5317e9d5209SBarry Smith ierr = PetscOptionsName("-snes_mf_ksp_monitor","Monitor matrix-free parameters","MatSNESMFKSPMonitor",&flg);CHKERRQ(ierr); 5327e9d5209SBarry Smith if (flg) { 5337e9d5209SBarry Smith KSP ksp; 53494b7f48cSBarry Smith ierr = SNESGetKSP(mfctx->snes,&ksp);CHKERRQ(ierr); 535a6570f20SBarry Smith ierr = KSPMonitorSet(ksp,MatSNESMFKSPMonitor,PETSC_NULL,0);CHKERRQ(ierr); 5367e9d5209SBarry Smith } 5377e9d5209SBarry Smith } 5385b7f0c42SBarry Smith ierr = PetscOptionsName("-snes_mf_check_positivity","Insure that U + h*a is nonnegative","MatSNESMFSetCheckh",&flg);CHKERRQ(ierr); 5395b7f0c42SBarry Smith if (flg) { 5405b7f0c42SBarry Smith ierr = MatSNESMFSetCheckh(mat,MatSNESMFCheckPositivity,0);CHKERRQ(ierr); 5415b7f0c42SBarry Smith } 5427e9d5209SBarry Smith if (mfctx->ops->setfromoptions) { 5437e9d5209SBarry Smith ierr = (*mfctx->ops->setfromoptions)(mfctx);CHKERRQ(ierr); 5447e9d5209SBarry Smith } 5457e9d5209SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 5467e9d5209SBarry Smith PetscFunctionReturn(0); 5477e9d5209SBarry Smith } 5487e9d5209SBarry Smith 5490bad9183SKris Buschelman /*MC 550fafad747SKris Buschelman MATMFFD - MATMFFD = "mffd" - A matrix free matrix type. 5510bad9183SKris Buschelman 5520bad9183SKris Buschelman Level: advanced 5530bad9183SKris Buschelman 5548bc8193eSBarry Smith .seealso: MatCreateMF(), MatCreateSNESMF() 5550bad9183SKris Buschelman M*/ 556fe93831dSBarry Smith EXTERN_C_BEGIN 5577e9d5209SBarry Smith #undef __FUNCT__ 5587e9d5209SBarry Smith #define __FUNCT__ "MatCreate_MFFD" 55963dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatCreate_MFFD(Mat A) 5607e9d5209SBarry Smith { 5617e9d5209SBarry Smith MatSNESMFCtx mfctx; 562dfbe8321SBarry Smith PetscErrorCode ierr; 5637e9d5209SBarry Smith 5647e9d5209SBarry Smith PetscFunctionBegin; 5656e087cb5SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 5666e087cb5SMatthew Knepley ierr = SNESInitializePackage(PETSC_NULL);CHKERRQ(ierr); 5676e087cb5SMatthew Knepley #endif 5686e087cb5SMatthew Knepley 56952e6d16bSBarry Smith ierr = PetscHeaderCreate(mfctx,_p_MatSNESMFCtx,struct _MFOps,MATSNESMFCTX_COOKIE,0,"SNESMF",A->comm,MatDestroy_MFFD,MatView_MFFD);CHKERRQ(ierr); 5707e9d5209SBarry Smith mfctx->sp = 0; 5717e9d5209SBarry Smith mfctx->snes = 0; 57277d8c4bbSBarry Smith mfctx->error_rel = PETSC_SQRT_MACHINE_EPSILON; 5737e9d5209SBarry Smith mfctx->recomputeperiod = 1; 5747e9d5209SBarry Smith mfctx->count = 0; 5757e9d5209SBarry Smith mfctx->currenth = 0.0; 5767e9d5209SBarry Smith mfctx->historyh = PETSC_NULL; 5777e9d5209SBarry Smith mfctx->ncurrenth = 0; 5787e9d5209SBarry Smith mfctx->maxcurrenth = 0; 5797e9d5209SBarry Smith mfctx->type_name = 0; 5807e9d5209SBarry Smith mfctx->usesnes = PETSC_FALSE; 5817e9d5209SBarry Smith 582c5c390f1SBarry Smith mfctx->vshift = 0.0; 583c5c390f1SBarry Smith mfctx->vscale = 1.0; 584c5c390f1SBarry Smith 5857e9d5209SBarry Smith /* 5867e9d5209SBarry Smith Create the empty data structure to contain compute-h routines. 5877e9d5209SBarry Smith These will be filled in below from the command line options or 5887e9d5209SBarry Smith a later call with MatSNESMFSetType() or if that is not called 5898a124369SBarry Smith then it will default in the first use of MatMult_MFFD() 5907e9d5209SBarry Smith */ 5917e9d5209SBarry Smith mfctx->ops->compute = 0; 5927e9d5209SBarry Smith mfctx->ops->destroy = 0; 5937e9d5209SBarry Smith mfctx->ops->view = 0; 5947e9d5209SBarry Smith mfctx->ops->setfromoptions = 0; 5957e9d5209SBarry Smith mfctx->hctx = 0; 5967e9d5209SBarry Smith 5977e9d5209SBarry Smith mfctx->func = 0; 5987e9d5209SBarry Smith mfctx->funcctx = 0; 5997e9d5209SBarry Smith mfctx->funcvec = 0; 600ba6a83e5SMatthew Knepley mfctx->w = PETSC_NULL; 6017e9d5209SBarry Smith 60265df01d8SBarry Smith A->data = mfctx; 6037e9d5209SBarry Smith 6048a124369SBarry Smith A->ops->mult = MatMult_MFFD; 6058a124369SBarry Smith A->ops->destroy = MatDestroy_MFFD; 6068a124369SBarry Smith A->ops->view = MatView_MFFD; 6078a124369SBarry Smith A->ops->assemblyend = MatAssemblyEnd_MFFD; 6088a124369SBarry Smith A->ops->getdiagonal = MatGetDiagonal_MFFD; 609c5c390f1SBarry Smith A->ops->scale = MatScale_MFFD; 610c5c390f1SBarry Smith A->ops->shift = MatShift_MFFD; 61165df01d8SBarry Smith A->ops->setfromoptions = MatSNESMFSetFromOptions; 61232dfb669SBarry Smith A->assembled = PETSC_TRUE; 6137e9d5209SBarry Smith 61465df01d8SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatSNESMFSetBase_C","MatSNESMFSetBase_FD",MatSNESMFSetBase_FD);CHKERRQ(ierr); 615c5c390f1SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatSNESMFSetFunctioniBase_C","MatSNESMFSetFunctioniBase_FD",MatSNESMFSetFunctioniBase_FD);CHKERRQ(ierr); 61687828ca2SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatSNESMFSetFunctioni_C","MatSNESMFSetFunctioni_FD",MatSNESMFSetFunctioni_FD);CHKERRQ(ierr); 6175b7f0c42SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatSNESMFSetCheckh_C","MatSNESMFSetCheckh_FD",MatSNESMFSetCheckh_FD);CHKERRQ(ierr); 61865df01d8SBarry Smith mfctx->mat = A; 61917667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)A,MATMFFD);CHKERRQ(ierr); 6207e9d5209SBarry Smith PetscFunctionReturn(0); 6217e9d5209SBarry Smith } 622fe93831dSBarry Smith EXTERN_C_END 6237e9d5209SBarry Smith 6247e9d5209SBarry Smith #undef __FUNCT__ 6254a2ae208SSatish Balay #define __FUNCT__ "MatCreateMF" 62652baeb72SSatish Balay /*@ 6271d1367b7SBarry Smith MatCreateMF - Creates a matrix-free matrix. See also MatCreateSNESMF() 6281d1367b7SBarry Smith 6291d1367b7SBarry Smith Collective on Vec 6301d1367b7SBarry Smith 6311d1367b7SBarry Smith Input Parameters: 6321d1367b7SBarry Smith . x - vector that defines layout of the vectors and matrices 6331d1367b7SBarry Smith 6341d1367b7SBarry Smith Output Parameter: 6351d1367b7SBarry Smith . J - the matrix-free matrix 6361d1367b7SBarry Smith 6371d1367b7SBarry Smith Level: advanced 6381d1367b7SBarry Smith 6391d1367b7SBarry Smith Notes: 6401d1367b7SBarry Smith The matrix-free matrix context merely contains the function pointers 6411d1367b7SBarry Smith and work space for performing finite difference approximations of 6421d1367b7SBarry Smith Jacobian-vector products, F'(u)*a, 6431d1367b7SBarry Smith 6441d1367b7SBarry Smith The default code uses the following approach to compute h 6451d1367b7SBarry Smith 6461d1367b7SBarry Smith .vb 6471d1367b7SBarry Smith F'(u)*a = [F(u+h*a) - F(u)]/h where 6481d1367b7SBarry Smith h = error_rel*u'a/||a||^2 if |u'a| > umin*||a||_{1} 6491d1367b7SBarry Smith = error_rel*umin*sign(u'a)*||a||_{1}/||a||^2 otherwise 6501d1367b7SBarry Smith where 6511d1367b7SBarry Smith error_rel = square root of relative error in function evaluation 6521d1367b7SBarry Smith umin = minimum iterate parameter 6531d1367b7SBarry Smith .ve 6541d1367b7SBarry Smith 6551d1367b7SBarry Smith The user can set the error_rel via MatSNESMFSetFunctionError() and 6561d1367b7SBarry Smith umin via MatSNESMFDefaultSetUmin(); see the nonlinear solvers chapter 6571d1367b7SBarry Smith of the users manual for details. 6581d1367b7SBarry Smith 6591d1367b7SBarry Smith The user should call MatDestroy() when finished with the matrix-free 6601d1367b7SBarry Smith matrix context. 6611d1367b7SBarry Smith 6621d1367b7SBarry Smith Options Database Keys: 6631d1367b7SBarry Smith + -snes_mf_err <error_rel> - Sets error_rel 6641d1367b7SBarry Smith . -snes_mf_unim <umin> - Sets umin (for default PETSc routine that computes h only) 6655b7f0c42SBarry Smith . -snes_mf_ksp_monitor - KSP monitor routine that prints differencing h 6665b7f0c42SBarry Smith - -snes_mf_check_positivity 6671d1367b7SBarry Smith 6681d1367b7SBarry Smith .keywords: default, matrix-free, create, matrix 6691d1367b7SBarry Smith 6706ce558aeSBarry Smith .seealso: MatDestroy(), MatSNESMFSetFunctionError(), MatSNESMFDefaultSetUmin(), MatSNESMFSetFunction() 6711d1367b7SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), MatCreateSNESMF(), 672fed8bd04SBarry Smith MatSNESMFGetH(),MatSNESMFKSPMonitor(), MatSNESMFRegisterDynamic),, MatSNESMFComputeJacobian() 6731d1367b7SBarry Smith 6741d1367b7SBarry Smith @*/ 67563dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatCreateMF(Vec x,Mat *J) 6761d1367b7SBarry Smith { 677a4d4d686SBarry Smith MPI_Comm comm; 6786849ba73SBarry Smith PetscErrorCode ierr; 679a7cc72afSBarry Smith PetscInt n,nloc; 680a4d4d686SBarry Smith 681a4d4d686SBarry Smith PetscFunctionBegin; 6821d1367b7SBarry Smith ierr = PetscObjectGetComm((PetscObject)x,&comm);CHKERRQ(ierr); 68365df01d8SBarry Smith ierr = VecGetSize(x,&n);CHKERRQ(ierr); 68465df01d8SBarry Smith ierr = VecGetLocalSize(x,&nloc);CHKERRQ(ierr); 685f69a0ea3SMatthew Knepley ierr = MatCreate(comm,J);CHKERRQ(ierr); 686f69a0ea3SMatthew Knepley ierr = MatSetSizes(*J,nloc,nloc,n,n);CHKERRQ(ierr); 687e56c5435SBarry Smith ierr = MatRegisterDynamic(MATMFFD,0,"MatCreate_MFFD",MatCreate_MFFD);CHKERRQ(ierr); 68865df01d8SBarry Smith ierr = MatSetType(*J,MATMFFD);CHKERRQ(ierr); 6899a6cb015SBarry Smith PetscFunctionReturn(0); 6909a6cb015SBarry Smith } 6919a6cb015SBarry Smith 692a4d4d686SBarry Smith 6934a2ae208SSatish Balay #undef __FUNCT__ 6944a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFGetH" 695a4d4d686SBarry Smith /*@ 69665f2ba5bSLois Curfman McInnes MatSNESMFGetH - Gets the last value that was used as the differencing 697a4d4d686SBarry Smith parameter. 698a4d4d686SBarry Smith 699a4d4d686SBarry Smith Not Collective 700a4d4d686SBarry Smith 701a4d4d686SBarry Smith Input Parameters: 7025a655dc6SBarry Smith . mat - the matrix obtained with MatCreateSNESMF() 703a4d4d686SBarry Smith 704a4d4d686SBarry Smith Output Paramter: 705a4d4d686SBarry Smith . h - the differencing step size 706a4d4d686SBarry Smith 70715091d37SBarry Smith Level: advanced 70815091d37SBarry Smith 709a4d4d686SBarry Smith .keywords: SNES, matrix-free, parameters 710a4d4d686SBarry Smith 7115a655dc6SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFSetHHistory(), 7125a655dc6SBarry Smith MatSNESMFResetHHistory(),MatSNESMFKSPMonitor() 713a4d4d686SBarry Smith @*/ 71463dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFGetH(Mat mat,PetscScalar *h) 715a4d4d686SBarry Smith { 7167e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 717a4d4d686SBarry Smith 718a4d4d686SBarry Smith PetscFunctionBegin; 719a4d4d686SBarry Smith *h = ctx->currenth; 720a4d4d686SBarry Smith PetscFunctionReturn(0); 721a4d4d686SBarry Smith } 722a4d4d686SBarry Smith 7234a2ae208SSatish Balay #undef __FUNCT__ 7244a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFKSPMonitor" 725906ed7ccSBarry Smith /*@C 726906ed7ccSBarry Smith MatSNESMFKSPMonitor - A KSP monitor for use with the PETSc 72765f2ba5bSLois Curfman McInnes SNES matrix free routines. Prints the differencing parameter used at 72865f2ba5bSLois Curfman McInnes each step. 729906ed7ccSBarry Smith 730906ed7ccSBarry Smith Collective on KSP 731906ed7ccSBarry Smith 732906ed7ccSBarry Smith Input Parameters: 733906ed7ccSBarry Smith + ksp - the Krylov solver object 734906ed7ccSBarry Smith . n - the current iteration 735906ed7ccSBarry Smith . rnorm - the current residual norm (may be preconditioned or not depending on solver and options 736906ed7ccSBarry Smith _ dummy - unused argument 737906ed7ccSBarry Smith 738906ed7ccSBarry Smith Options Database: 739906ed7ccSBarry Smith . -snes_mf_ksp_monitor - turn this monitor on 740906ed7ccSBarry Smith 741a6570f20SBarry Smith Notes: Use KSPMonitorSet(ksp,MatSNESMFKSPMonitor,PETSC_NULL,PETSC_NULL); 742906ed7ccSBarry Smith 743a6570f20SBarry Smith .seealso: KSPMonitorSet() 744906ed7ccSBarry Smith 745906ed7ccSBarry Smith @*/ 74663dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFKSPMonitor(KSP ksp,PetscInt n,PetscReal rnorm,void *dummy) 747a4d4d686SBarry Smith { 7485a655dc6SBarry Smith MatSNESMFCtx ctx; 749dfbe8321SBarry Smith PetscErrorCode ierr; 750a4d4d686SBarry Smith Mat mat; 751a4d4d686SBarry Smith MPI_Comm comm; 752a4d4d686SBarry Smith PetscTruth nonzeroinitialguess; 753a4d4d686SBarry Smith 754a4d4d686SBarry Smith PetscFunctionBegin; 755a4d4d686SBarry Smith ierr = PetscObjectGetComm((PetscObject)ksp,&comm);CHKERRQ(ierr); 756a4d4d686SBarry Smith ierr = KSPGetInitialGuessNonzero(ksp,&nonzeroinitialguess);CHKERRQ(ierr); 757906ed7ccSBarry Smith ierr = KSPGetOperators(ksp,&mat,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr); 7587e9d5209SBarry Smith ctx = (MatSNESMFCtx)mat->data; 7597e9d5209SBarry Smith 760a4d4d686SBarry Smith if (n > 0 || nonzeroinitialguess) { 761aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 762a83599f4SBarry Smith ierr = PetscPrintf(comm,"%D KSP Residual norm %14.12e h %G + %G i\n",n,rnorm, 763329f5518SBarry Smith PetscRealPart(ctx->currenth),PetscImaginaryPart(ctx->currenth));CHKERRQ(ierr); 764a4d4d686SBarry Smith #else 765a83599f4SBarry Smith ierr = PetscPrintf(comm,"%D KSP Residual norm %14.12e h %G \n",n,rnorm,ctx->currenth);CHKERRQ(ierr); 766a4d4d686SBarry Smith #endif 767a4d4d686SBarry Smith } else { 76877431f27SBarry Smith ierr = PetscPrintf(comm,"%D KSP Residual norm %14.12e\n",n,rnorm);CHKERRQ(ierr); 769a4d4d686SBarry Smith } 770a4d4d686SBarry Smith PetscFunctionReturn(0); 771a4d4d686SBarry Smith } 772a4d4d686SBarry Smith 7734a2ae208SSatish Balay #undef __FUNCT__ 7744a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetFunction" 77585614651SBarry Smith /*@C 77685614651SBarry Smith MatSNESMFSetFunction - Sets the function used in applying the matrix free. 77785614651SBarry Smith 77885614651SBarry Smith Collective on Mat 77985614651SBarry Smith 78085614651SBarry Smith Input Parameters: 78185614651SBarry Smith + mat - the matrix free matrix created via MatCreateSNESMF() 78285614651SBarry Smith . v - workspace vector 78385614651SBarry Smith . func - the function to use 78485614651SBarry Smith - funcctx - optional function context passed to function 78585614651SBarry Smith 78685614651SBarry Smith Level: advanced 78785614651SBarry Smith 78885614651SBarry Smith Notes: 78985614651SBarry Smith If you use this you MUST call MatAssemblyBegin()/MatAssemblyEnd() on the matrix free 79085614651SBarry Smith matrix inside your compute Jacobian routine 79185614651SBarry Smith 79285614651SBarry Smith If this is not set then it will use the function set with SNESSetFunction() 79385614651SBarry Smith 79485614651SBarry Smith .keywords: SNES, matrix-free, function 79585614651SBarry Smith 79685614651SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFGetH(), 79785614651SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 79885614651SBarry Smith MatSNESMFKSPMonitor(), SNESetFunction() 79985614651SBarry Smith @*/ 80063dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunction(Mat mat,Vec v,PetscErrorCode (*func)(SNES,Vec,Vec,void *),void *funcctx) 80185614651SBarry Smith { 8027e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 80385614651SBarry Smith 80485614651SBarry Smith PetscFunctionBegin; 80585614651SBarry Smith ctx->func = func; 80685614651SBarry Smith ctx->funcctx = funcctx; 80785614651SBarry Smith ctx->funcvec = v; 80885614651SBarry Smith PetscFunctionReturn(0); 80985614651SBarry Smith } 81085614651SBarry Smith 811cf57b110SBarry Smith #undef __FUNCT__ 812cf57b110SBarry Smith #define __FUNCT__ "MatSNESMFSetFunctioni" 813cf57b110SBarry Smith /*@C 814cf57b110SBarry Smith MatSNESMFSetFunctioni - Sets the function for a single component 815cf57b110SBarry Smith 816cf57b110SBarry Smith Collective on Mat 817cf57b110SBarry Smith 818cf57b110SBarry Smith Input Parameters: 819cf57b110SBarry Smith + mat - the matrix free matrix created via MatCreateSNESMF() 820cf57b110SBarry Smith - funci - the function to use 821cf57b110SBarry Smith 822cf57b110SBarry Smith Level: advanced 823cf57b110SBarry Smith 824cf57b110SBarry Smith Notes: 825cf57b110SBarry Smith If you use this you MUST call MatAssemblyBegin()/MatAssemblyEnd() on the matrix free 826cf57b110SBarry Smith matrix inside your compute Jacobian routine 827cf57b110SBarry Smith 828cf57b110SBarry Smith 829cf57b110SBarry Smith .keywords: SNES, matrix-free, function 830cf57b110SBarry Smith 831cf57b110SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFGetH(), 832cf57b110SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 833cf57b110SBarry Smith MatSNESMFKSPMonitor(), SNESetFunction() 834cf57b110SBarry Smith @*/ 83563dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunctioni(Mat mat,PetscErrorCode (*funci)(PetscInt,Vec,PetscScalar*,void *)) 836cf57b110SBarry Smith { 837a7cc72afSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscErrorCode (*)(PetscInt,Vec,PetscScalar*,void *)); 838cf57b110SBarry Smith 839cf57b110SBarry Smith PetscFunctionBegin; 8404482741eSBarry Smith PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 841c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSNESMFSetFunctioni_C",(void (**)(void))&f);CHKERRQ(ierr); 84287828ca2SBarry Smith if (f) { 84387828ca2SBarry Smith ierr = (*f)(mat,funci);CHKERRQ(ierr); 84487828ca2SBarry Smith } 845cf57b110SBarry Smith PetscFunctionReturn(0); 846cf57b110SBarry Smith } 847cf57b110SBarry Smith 84887828ca2SBarry Smith 849cf57b110SBarry Smith #undef __FUNCT__ 850cf57b110SBarry Smith #define __FUNCT__ "MatSNESMFSetFunctioniBase" 851cf57b110SBarry Smith /*@C 852cf57b110SBarry Smith MatSNESMFSetFunctioniBase - Sets the base vector for a single component function evaluation 853cf57b110SBarry Smith 854cf57b110SBarry Smith Collective on Mat 855cf57b110SBarry Smith 856cf57b110SBarry Smith Input Parameters: 857cf57b110SBarry Smith + mat - the matrix free matrix created via MatCreateSNESMF() 858cf57b110SBarry Smith - func - the function to use 859cf57b110SBarry Smith 860cf57b110SBarry Smith Level: advanced 861cf57b110SBarry Smith 862cf57b110SBarry Smith Notes: 863cf57b110SBarry Smith If you use this you MUST call MatAssemblyBegin()/MatAssemblyEnd() on the matrix free 864cf57b110SBarry Smith matrix inside your compute Jacobian routine 865cf57b110SBarry Smith 866cf57b110SBarry Smith 867cf57b110SBarry Smith .keywords: SNES, matrix-free, function 868cf57b110SBarry Smith 869cf57b110SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFGetH(), 870cf57b110SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 871cf57b110SBarry Smith MatSNESMFKSPMonitor(), SNESetFunction() 872cf57b110SBarry Smith @*/ 87363dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunctioniBase(Mat mat,PetscErrorCode (*func)(Vec,void *)) 874cf57b110SBarry Smith { 8756849ba73SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscErrorCode (*)(Vec,void *)); 876cf57b110SBarry Smith 877cf57b110SBarry Smith PetscFunctionBegin; 8784482741eSBarry Smith PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 879c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSNESMFSetFunctioniBase_C",(void (**)(void))&f);CHKERRQ(ierr); 88087828ca2SBarry Smith if (f) { 88187828ca2SBarry Smith ierr = (*f)(mat,func);CHKERRQ(ierr); 88287828ca2SBarry Smith } 883cf57b110SBarry Smith PetscFunctionReturn(0); 884cf57b110SBarry Smith } 885cf57b110SBarry Smith 88685614651SBarry Smith 8874a2ae208SSatish Balay #undef __FUNCT__ 8884a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetPeriod" 889329f5518SBarry Smith /*@ 890329f5518SBarry Smith MatSNESMFSetPeriod - Sets how often h is recomputed, by default it is everytime 891329f5518SBarry Smith 892329f5518SBarry Smith Collective on Mat 893329f5518SBarry Smith 894329f5518SBarry Smith Input Parameters: 895329f5518SBarry Smith + mat - the matrix free matrix created via MatCreateSNESMF() 896329f5518SBarry Smith - period - 1 for everytime, 2 for every second etc 897329f5518SBarry Smith 898329f5518SBarry Smith Options Database Keys: 899329f5518SBarry Smith + -snes_mf_period <period> 900329f5518SBarry Smith 901329f5518SBarry Smith Level: advanced 902329f5518SBarry Smith 903329f5518SBarry Smith 904329f5518SBarry Smith .keywords: SNES, matrix-free, parameters 905329f5518SBarry Smith 906329f5518SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFGetH(), 907329f5518SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 908329f5518SBarry Smith MatSNESMFKSPMonitor() 909329f5518SBarry Smith @*/ 91063dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetPeriod(Mat mat,PetscInt period) 911329f5518SBarry Smith { 9127e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 913329f5518SBarry Smith 914329f5518SBarry Smith PetscFunctionBegin; 915329f5518SBarry Smith ctx->recomputeperiod = period; 916329f5518SBarry Smith PetscFunctionReturn(0); 917329f5518SBarry Smith } 918329f5518SBarry Smith 9194a2ae208SSatish Balay #undef __FUNCT__ 9204a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetFunctionError" 921a4d4d686SBarry Smith /*@ 9225a655dc6SBarry Smith MatSNESMFSetFunctionError - Sets the error_rel for the approximation of 923a4d4d686SBarry Smith matrix-vector products using finite differences. 924a4d4d686SBarry Smith 925a4d4d686SBarry Smith Collective on Mat 926a4d4d686SBarry Smith 927a4d4d686SBarry Smith Input Parameters: 9285a655dc6SBarry Smith + mat - the matrix free matrix created via MatCreateSNESMF() 9299a6cb015SBarry Smith - error_rel - relative error (should be set to the square root of 930a4d4d686SBarry Smith the relative error in the function evaluations) 931a4d4d686SBarry Smith 93215091d37SBarry Smith Options Database Keys: 93315091d37SBarry Smith + -snes_mf_err <error_rel> - Sets error_rel 93415091d37SBarry Smith 93515091d37SBarry Smith Level: advanced 93615091d37SBarry Smith 937a4d4d686SBarry Smith Notes: 938a4d4d686SBarry Smith The default matrix-free matrix-vector product routine computes 939a4d4d686SBarry Smith .vb 94065f2ba5bSLois Curfman McInnes F'(u)*a = [F(u+h*a) - F(u)]/h where 941a4d4d686SBarry Smith h = error_rel*u'a/||a||^2 if |u'a| > umin*||a||_{1} 942a4d4d686SBarry Smith = error_rel*umin*sign(u'a)*||a||_{1}/||a||^2 else 943a4d4d686SBarry Smith .ve 944a4d4d686SBarry Smith 945a4d4d686SBarry Smith .keywords: SNES, matrix-free, parameters 946a4d4d686SBarry Smith 9475a655dc6SBarry Smith .seealso: MatCreateSNESMF(),MatSNESMFGetH(), 9485a655dc6SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 9495a655dc6SBarry Smith MatSNESMFKSPMonitor() 950a4d4d686SBarry Smith @*/ 95163dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetFunctionError(Mat mat,PetscReal error) 952a4d4d686SBarry Smith { 9537e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)mat->data; 954a4d4d686SBarry Smith 955a4d4d686SBarry Smith PetscFunctionBegin; 956a4d4d686SBarry Smith if (error != PETSC_DEFAULT) ctx->error_rel = error; 957a4d4d686SBarry Smith PetscFunctionReturn(0); 958a4d4d686SBarry Smith } 959a4d4d686SBarry Smith 9604a2ae208SSatish Balay #undef __FUNCT__ 9614a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFAddNullSpace" 962a4d4d686SBarry Smith /*@ 96365f2ba5bSLois Curfman McInnes MatSNESMFAddNullSpace - Provides a null space that an operator is 96465f2ba5bSLois Curfman McInnes supposed to have. Since roundoff will create a small component in 96565f2ba5bSLois Curfman McInnes the null space, if you know the null space you may have it 96665f2ba5bSLois Curfman McInnes automatically removed. 967a4d4d686SBarry Smith 968a4d4d686SBarry Smith Collective on Mat 969a4d4d686SBarry Smith 970a4d4d686SBarry Smith Input Parameters: 971a4d4d686SBarry Smith + J - the matrix-free matrix context 97274637425SBarry Smith - nullsp - object created with MatNullSpaceCreate() 973a4d4d686SBarry Smith 97415091d37SBarry Smith Level: advanced 97515091d37SBarry Smith 976a4d4d686SBarry Smith .keywords: SNES, matrix-free, null space 977a4d4d686SBarry Smith 97874637425SBarry Smith .seealso: MatNullSpaceCreate(), MatSNESMFGetH(), MatCreateSNESMF(), 9795a655dc6SBarry Smith MatSNESMFSetHHistory(), MatSNESMFResetHHistory(), 9805a655dc6SBarry Smith MatSNESMFKSPMonitor(), MatSNESMFErrorRel() 981a4d4d686SBarry Smith @*/ 98263dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFAddNullSpace(Mat J,MatNullSpace nullsp) 983a4d4d686SBarry Smith { 984dfbe8321SBarry Smith PetscErrorCode ierr; 9857e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 986a4d4d686SBarry Smith MPI_Comm comm; 987a4d4d686SBarry Smith 988a4d4d686SBarry Smith PetscFunctionBegin; 9892d0c0e3bSBarry Smith ierr = PetscObjectGetComm((PetscObject)J,&comm);CHKERRQ(ierr); 990a4d4d686SBarry Smith 99185614651SBarry Smith ctx->sp = nullsp; 99285614651SBarry Smith ierr = PetscObjectReference((PetscObject)nullsp);CHKERRQ(ierr); 993a4d4d686SBarry Smith PetscFunctionReturn(0); 994a4d4d686SBarry Smith } 995a4d4d686SBarry Smith 9964a2ae208SSatish Balay #undef __FUNCT__ 9974a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetHHistory" 998a4d4d686SBarry Smith /*@ 99965f2ba5bSLois Curfman McInnes MatSNESMFSetHHistory - Sets an array to collect a history of the 100065f2ba5bSLois Curfman McInnes differencing values (h) computed for the matrix-free product. 1001a4d4d686SBarry Smith 1002a4d4d686SBarry Smith Collective on Mat 1003a4d4d686SBarry Smith 1004a4d4d686SBarry Smith Input Parameters: 1005a4d4d686SBarry Smith + J - the matrix-free matrix context 100665f2ba5bSLois Curfman McInnes . histroy - space to hold the history 100765f2ba5bSLois Curfman McInnes - nhistory - number of entries in history, if more entries are generated than 100865f2ba5bSLois Curfman McInnes nhistory, then the later ones are discarded 1009a4d4d686SBarry Smith 101015091d37SBarry Smith Level: advanced 101115091d37SBarry Smith 1012a4d4d686SBarry Smith Notes: 101365f2ba5bSLois Curfman McInnes Use MatSNESMFResetHHistory() to reset the history counter and collect 101465f2ba5bSLois Curfman McInnes a new batch of differencing parameters, h. 1015a4d4d686SBarry Smith 1016a4d4d686SBarry Smith .keywords: SNES, matrix-free, h history, differencing history 1017a4d4d686SBarry Smith 10185a655dc6SBarry Smith .seealso: MatSNESMFGetH(), MatCreateSNESMF(), 10195a655dc6SBarry Smith MatSNESMFResetHHistory(), 10205a655dc6SBarry Smith MatSNESMFKSPMonitor(), MatSNESMFSetFunctionError() 1021a4d4d686SBarry Smith 1022a4d4d686SBarry Smith @*/ 102363dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetHHistory(Mat J,PetscScalar history[],PetscInt nhistory) 1024a4d4d686SBarry Smith { 10257e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 1026a4d4d686SBarry Smith 1027a4d4d686SBarry Smith PetscFunctionBegin; 1028a4d4d686SBarry Smith ctx->historyh = history; 1029a4d4d686SBarry Smith ctx->maxcurrenth = nhistory; 1030a4d4d686SBarry Smith ctx->currenth = 0; 1031a4d4d686SBarry Smith PetscFunctionReturn(0); 1032a4d4d686SBarry Smith } 1033a4d4d686SBarry Smith 10344a2ae208SSatish Balay #undef __FUNCT__ 10354a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFResetHHistory" 1036a4d4d686SBarry Smith /*@ 10375a655dc6SBarry Smith MatSNESMFResetHHistory - Resets the counter to zero to begin 1038a4d4d686SBarry Smith collecting a new set of differencing histories. 1039a4d4d686SBarry Smith 1040a4d4d686SBarry Smith Collective on Mat 1041a4d4d686SBarry Smith 1042a4d4d686SBarry Smith Input Parameters: 1043a4d4d686SBarry Smith . J - the matrix-free matrix context 1044a4d4d686SBarry Smith 104515091d37SBarry Smith Level: advanced 104615091d37SBarry Smith 1047a4d4d686SBarry Smith Notes: 104865f2ba5bSLois Curfman McInnes Use MatSNESMFSetHHistory() to create the original history counter. 1049a4d4d686SBarry Smith 1050a4d4d686SBarry Smith .keywords: SNES, matrix-free, h history, differencing history 1051a4d4d686SBarry Smith 10525a655dc6SBarry Smith .seealso: MatSNESMFGetH(), MatCreateSNESMF(), 10535a655dc6SBarry Smith MatSNESMFSetHHistory(), 10545a655dc6SBarry Smith MatSNESMFKSPMonitor(), MatSNESMFSetFunctionError() 1055a4d4d686SBarry Smith 1056a4d4d686SBarry Smith @*/ 105763dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFResetHHistory(Mat J) 1058a4d4d686SBarry Smith { 10597e9d5209SBarry Smith MatSNESMFCtx ctx = (MatSNESMFCtx)J->data; 1060a4d4d686SBarry Smith 1061a4d4d686SBarry Smith PetscFunctionBegin; 1062be726c96SBarry Smith ctx->ncurrenth = 0; 1063a4d4d686SBarry Smith PetscFunctionReturn(0); 1064a4d4d686SBarry Smith } 1065a4d4d686SBarry Smith 10664a2ae208SSatish Balay #undef __FUNCT__ 1067fed8bd04SBarry Smith #define __FUNCT__ "MatSNESMFComputeJacobian" 10683960baedSBarry Smith /*@ 10693960baedSBarry Smith MatSNESMFComputeJacobian - Tells the matrix-free Jacobian object the new location at which 10703960baedSBarry Smith Jacobian matrix vector products will be computed at, i.e. J(x) * a. 10713960baedSBarry Smith 10723960baedSBarry Smith Collective on SNES 10733960baedSBarry Smith 10743960baedSBarry Smith Input Parameters: 10753960baedSBarry Smith + snes - the nonlinear solver context 10763960baedSBarry Smith . x - the point at which the Jacobian vector products will be performed 10773960baedSBarry Smith . jac - the matrix-free Jacobian object 10783960baedSBarry Smith . B - either the same as jac or another matrix type (ignored) 10793960baedSBarry Smith . flag - not relevent for matrix-free form 10803960baedSBarry Smith - dummy - the user context (ignored) 10813960baedSBarry Smith 10823960baedSBarry Smith Level: developer 10833960baedSBarry Smith 10843960baedSBarry Smith Notes: 10853960baedSBarry Smith This can be passed into SNESSetJacobian() when using a completely matrix-free solver, 10863960baedSBarry Smith that is the B matrix is also the same matrix operator. This is used when you select 10873960baedSBarry Smith -snes_mf but rarely used directly by users. 10883960baedSBarry Smith 10893960baedSBarry Smith .seealso: MatSNESMFGetH(), MatCreateSNESMF(), 10903960baedSBarry Smith MatSNESMFSetHHistory(), 10913960baedSBarry Smith MatSNESMFKSPMonitor(), MatSNESMFSetFunctionError(), MatSNESMFCreate(), SNESSetJacobian() 10923960baedSBarry Smith 10933960baedSBarry Smith @*/ 109463dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFComputeJacobian(SNES snes,Vec x,Mat *jac,Mat *B,MatStructure *flag,void *dummy) 10951d1367b7SBarry Smith { 1096dfbe8321SBarry Smith PetscErrorCode ierr; 10971d1367b7SBarry Smith PetscFunctionBegin; 10981d1367b7SBarry Smith ierr = MatAssemblyBegin(*jac,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10991d1367b7SBarry Smith ierr = MatAssemblyEnd(*jac,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11001d1367b7SBarry Smith PetscFunctionReturn(0); 11011d1367b7SBarry Smith } 11021d1367b7SBarry Smith 11034a2ae208SSatish Balay #undef __FUNCT__ 11044a2ae208SSatish Balay #define __FUNCT__ "MatSNESMFSetBase" 11055b7f0c42SBarry Smith /*@ 11065b7f0c42SBarry Smith MatSNESMFSetBase - Sets the vector U at which matrix vector products of the 11075b7f0c42SBarry Smith Jacobian are computed 11085b7f0c42SBarry Smith 11095b7f0c42SBarry Smith Collective on Mat 11105b7f0c42SBarry Smith 11115b7f0c42SBarry Smith Input Parameters: 11125b7f0c42SBarry Smith + J - the MatSNESMF matrix 11135b7f0c42SBarry Smith - U - the vector 11145b7f0c42SBarry Smith 11155b7f0c42SBarry Smith Notes: This is rarely used directly 11165b7f0c42SBarry Smith 11175b7f0c42SBarry Smith Level: advanced 11185b7f0c42SBarry Smith 11195b7f0c42SBarry Smith @*/ 112063dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetBase(Mat J,Vec U) 11211d1367b7SBarry Smith { 1122dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,Vec); 11231d1367b7SBarry Smith 11241d1367b7SBarry Smith PetscFunctionBegin; 11254482741eSBarry Smith PetscValidHeaderSpecific(J,MAT_COOKIE,1); 11264482741eSBarry Smith PetscValidHeaderSpecific(U,VEC_COOKIE,2); 1127c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)J,"MatSNESMFSetBase_C",(void (**)(void))&f);CHKERRQ(ierr); 1128cf3bea43SBarry Smith if (f) { 1129cf3bea43SBarry Smith ierr = (*f)(J,U);CHKERRQ(ierr); 113049d4803aSBarry Smith } 11311d1367b7SBarry Smith PetscFunctionReturn(0); 11321d1367b7SBarry Smith } 1133cf57b110SBarry Smith 11345b7f0c42SBarry Smith #undef __FUNCT__ 11355b7f0c42SBarry Smith #define __FUNCT__ "MatSNESMFSetCheckh" 113661860be5SBarry Smith /*@C 11375b7f0c42SBarry Smith MatSNESMFSetCheckh - Sets a function that checks the computed h and adjusts 11385b7f0c42SBarry Smith it to satisfy some criteria 1139cf57b110SBarry Smith 11405b7f0c42SBarry Smith Collective on Mat 11415b7f0c42SBarry Smith 11425b7f0c42SBarry Smith Input Parameters: 11435b7f0c42SBarry Smith + J - the MatSNESMF matrix 11445b7f0c42SBarry Smith . fun - the function that checks h 11455b7f0c42SBarry Smith - ctx - any context needed by the function 11465b7f0c42SBarry Smith 11475b7f0c42SBarry Smith Options Database Keys: 11485b7f0c42SBarry Smith . -snes_mf_check_positivity 11495b7f0c42SBarry Smith 11505b7f0c42SBarry Smith Level: advanced 11515b7f0c42SBarry Smith 11525b7f0c42SBarry Smith Notes: For example, MatSNESMFSetCheckPositivity() insures that all entries 11535b7f0c42SBarry Smith of U + h*a are non-negative 11545b7f0c42SBarry Smith 11555b7f0c42SBarry Smith .seealso: MatSNESMFSetCheckPositivity() 11565b7f0c42SBarry Smith @*/ 115763dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFSetCheckh(Mat J,PetscErrorCode (*fun)(Vec,Vec,PetscScalar*,void*),void* ctx) 11585b7f0c42SBarry Smith { 11596849ba73SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscErrorCode (*)(Vec,Vec,PetscScalar*,void*),void*); 11605b7f0c42SBarry Smith 11615b7f0c42SBarry Smith PetscFunctionBegin; 11624482741eSBarry Smith PetscValidHeaderSpecific(J,MAT_COOKIE,1); 11635b7f0c42SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)J,"MatSNESMFSetCheckh_C",(void (**)(void))&f);CHKERRQ(ierr); 11645b7f0c42SBarry Smith if (f) { 11655b7f0c42SBarry Smith ierr = (*f)(J,fun,ctx);CHKERRQ(ierr); 11665b7f0c42SBarry Smith } 11675b7f0c42SBarry Smith PetscFunctionReturn(0); 11685b7f0c42SBarry Smith } 11695b7f0c42SBarry Smith 11705b7f0c42SBarry Smith #undef __FUNCT__ 11715b7f0c42SBarry Smith #define __FUNCT__ "MatSNESMFSetCheckPositivity" 11725b7f0c42SBarry Smith /*@ 11735b7f0c42SBarry Smith MatSNESMFCheckPositivity - Checks that all entries in U + h*a are positive or 11745b7f0c42SBarry Smith zero, decreases h until this is satisfied. 11755b7f0c42SBarry Smith 11765b7f0c42SBarry Smith Collective on Vec 11775b7f0c42SBarry Smith 11785b7f0c42SBarry Smith Input Parameters: 11795b7f0c42SBarry Smith + U - base vector that is added to 11805b7f0c42SBarry Smith . a - vector that is added 11815b7f0c42SBarry Smith . h - scaling factor on a 11825b7f0c42SBarry Smith - dummy - context variable (unused) 11835b7f0c42SBarry Smith 11845b7f0c42SBarry Smith Options Database Keys: 11855b7f0c42SBarry Smith . -snes_mf_check_positivity 11865b7f0c42SBarry Smith 11875b7f0c42SBarry Smith Level: advanced 11885b7f0c42SBarry Smith 11895b7f0c42SBarry Smith Notes: This is rarely used directly, rather it is passed as an argument to 11905b7f0c42SBarry Smith MatSNESMFSetCheckh() 11915b7f0c42SBarry Smith 11925b7f0c42SBarry Smith .seealso: MatSNESMFSetCheckh() 11935b7f0c42SBarry Smith @*/ 119463dd3a1aSKris Buschelman PetscErrorCode PETSCSNES_DLLEXPORT MatSNESMFCheckPositivity(Vec U,Vec a,PetscScalar *h,void *dummy) 11955b7f0c42SBarry Smith { 11965b7f0c42SBarry Smith PetscReal val, minval; 11975b7f0c42SBarry Smith PetscScalar *u_vec, *a_vec; 1198dfbe8321SBarry Smith PetscErrorCode ierr; 1199a7cc72afSBarry Smith PetscInt i,n; 12005b7f0c42SBarry Smith MPI_Comm comm; 12015b7f0c42SBarry Smith 12025b7f0c42SBarry Smith PetscFunctionBegin; 12035b7f0c42SBarry Smith ierr = PetscObjectGetComm((PetscObject)U,&comm);CHKERRQ(ierr); 12045b7f0c42SBarry Smith ierr = VecGetArray(U,&u_vec);CHKERRQ(ierr); 12055b7f0c42SBarry Smith ierr = VecGetArray(a,&a_vec);CHKERRQ(ierr); 1206a7cc72afSBarry Smith ierr = VecGetLocalSize(U,&n);CHKERRQ(ierr); 120761860be5SBarry Smith minval = PetscAbsScalar(*h*1.01); 1208a7cc72afSBarry Smith for(i=0;i<n;i++) { 120961860be5SBarry Smith if (PetscRealPart(u_vec[i] + *h*a_vec[i]) <= 0.0) { 121061860be5SBarry Smith val = PetscAbsScalar(u_vec[i]/a_vec[i]); 12115b7f0c42SBarry Smith if (val < minval) minval = val; 12125b7f0c42SBarry Smith } 12135b7f0c42SBarry Smith } 12145b7f0c42SBarry Smith ierr = VecRestoreArray(U,&u_vec);CHKERRQ(ierr); 12155b7f0c42SBarry Smith ierr = VecRestoreArray(a,&a_vec);CHKERRQ(ierr); 12165b7f0c42SBarry Smith ierr = PetscGlobalMin(&minval,&val,comm);CHKERRQ(ierr); 121761860be5SBarry Smith if (val <= PetscAbsScalar(*h)) { 1218ae15b995SBarry Smith ierr = PetscInfo2(U,"Scaling back h from %G to %G\n",PetscRealPart(*h),.99*val);CHKERRQ(ierr); 121961860be5SBarry Smith if (PetscRealPart(*h) > 0.0) *h = 0.99*val; 12205b7f0c42SBarry Smith else *h = -0.99*val; 12215b7f0c42SBarry Smith } 12225b7f0c42SBarry Smith PetscFunctionReturn(0); 12235b7f0c42SBarry Smith } 1224cf57b110SBarry Smith 1225cf57b110SBarry Smith 1226cf57b110SBarry Smith 1227cf57b110SBarry Smith 1228cf57b110SBarry Smith 1229cf57b110SBarry Smith 1230cf57b110SBarry Smith 1231