1c4762a1bSJed Brown static const char help[] = "p-Bratu nonlinear PDE in 2d.\n\ 2c4762a1bSJed Brown We solve the p-Laplacian (nonlinear diffusion) combined with\n\ 3c4762a1bSJed Brown the Bratu (solid fuel ignition) nonlinearity in a 2D rectangular\n\ 4c4762a1bSJed Brown domain, using distributed arrays (DAs) to partition the parallel grid.\n\ 5c4762a1bSJed Brown The command line options include:\n\ 6c4762a1bSJed Brown -p <2>: `p' in p-Laplacian term\n\ 7c4762a1bSJed Brown -epsilon <1e-05>: Strain-regularization in p-Laplacian\n\ 8c4762a1bSJed Brown -lambda <6>: Bratu parameter\n\ 9c4762a1bSJed Brown -blocks <bx,by>: number of coefficient interfaces in x and y direction\n\ 10c4762a1bSJed Brown -kappa <1e-3>: diffusivity in odd regions\n\ 11c4762a1bSJed Brown \n"; 12c4762a1bSJed Brown 13c4762a1bSJed Brown 14c4762a1bSJed Brown /*F 15c4762a1bSJed Brown The $p$-Bratu problem is a combination of the $p$-Laplacian (nonlinear diffusion) and the Brutu solid fuel ignition problem. 16c4762a1bSJed Brown This problem is modeled by the partial differential equation 17c4762a1bSJed Brown 18c4762a1bSJed Brown \begin{equation*} 19c4762a1bSJed Brown -\nabla\cdot (\eta \nabla u) - \lambda \exp(u) = 0 20c4762a1bSJed Brown \end{equation*} 21c4762a1bSJed Brown 22c4762a1bSJed Brown on $\Omega = (-1,1)^2$ with closure 23c4762a1bSJed Brown 24c4762a1bSJed Brown \begin{align*} 25c4762a1bSJed Brown \eta(\gamma) &= (\epsilon^2 + \gamma)^{(p-2)/2} & \gamma &= \frac 1 2 |\nabla u|^2 26c4762a1bSJed Brown \end{align*} 27c4762a1bSJed Brown 28c4762a1bSJed Brown and boundary conditions $u = 0$ for $(x,y) \in \partial \Omega$ 29c4762a1bSJed Brown 30c4762a1bSJed Brown A 9-point finite difference stencil is used to discretize 31c4762a1bSJed Brown the boundary value problem to obtain a nonlinear system of equations. 32c4762a1bSJed Brown This would be a 5-point stencil if not for the $p$-Laplacian's nonlinearity. 33c4762a1bSJed Brown F*/ 34c4762a1bSJed Brown 35c4762a1bSJed Brown /* 36c4762a1bSJed Brown mpiexec -n 2 ./ex15 -snes_monitor -ksp_monitor log_summary 37c4762a1bSJed Brown */ 38c4762a1bSJed Brown 39c4762a1bSJed Brown /* 40c4762a1bSJed Brown Include "petscdmda.h" so that we can use distributed arrays (DMDAs). 41c4762a1bSJed Brown Include "petscsnes.h" so that we can use SNES solvers. Note that this 42c4762a1bSJed Brown file automatically includes: 43c4762a1bSJed Brown petsc.h - base PETSc routines petscvec.h - vectors 44c4762a1bSJed Brown petscsys.h - system routines petscmat.h - matrices 45c4762a1bSJed Brown petscis.h - index sets petscksp.h - Krylov subspace methods 46c4762a1bSJed Brown petscviewer.h - viewers petscpc.h - preconditioners 47c4762a1bSJed Brown petscksp.h - linear solvers 48c4762a1bSJed Brown */ 49c4762a1bSJed Brown 50c4762a1bSJed Brown #include <petscdm.h> 51c4762a1bSJed Brown #include <petscdmda.h> 52c4762a1bSJed Brown #include <petscsnes.h> 53c4762a1bSJed Brown 54c4762a1bSJed Brown typedef enum {JAC_BRATU,JAC_PICARD,JAC_STAR,JAC_NEWTON} JacType; 55c4762a1bSJed Brown static const char *const JacTypes[] = {"BRATU","PICARD","STAR","NEWTON","JacType","JAC_",0}; 56c4762a1bSJed Brown 57c4762a1bSJed Brown /* 58c4762a1bSJed Brown User-defined application context - contains data needed by the 59c4762a1bSJed Brown application-provided call-back routines, FormJacobianLocal() and 60c4762a1bSJed Brown FormFunctionLocal(). 61c4762a1bSJed Brown */ 62c4762a1bSJed Brown typedef struct { 63c4762a1bSJed Brown PetscReal lambda; /* Bratu parameter */ 64c4762a1bSJed Brown PetscReal p; /* Exponent in p-Laplacian */ 65c4762a1bSJed Brown PetscReal epsilon; /* Regularization */ 66c4762a1bSJed Brown PetscReal source; /* Source term */ 67c4762a1bSJed Brown JacType jtype; /* What type of Jacobian to assemble */ 68c4762a1bSJed Brown PetscBool picard; 69c4762a1bSJed Brown PetscInt blocks[2]; 70c4762a1bSJed Brown PetscReal kappa; 71c4762a1bSJed Brown PetscInt initial; /* initial conditions type */ 72c4762a1bSJed Brown } AppCtx; 73c4762a1bSJed Brown 74c4762a1bSJed Brown /* 75c4762a1bSJed Brown User-defined routines 76c4762a1bSJed Brown */ 77c4762a1bSJed Brown static PetscErrorCode FormRHS(AppCtx*,DM,Vec); 78c4762a1bSJed Brown static PetscErrorCode FormInitialGuess(AppCtx*,DM,Vec); 79c4762a1bSJed Brown static PetscErrorCode FormFunctionLocal(DMDALocalInfo*,PetscScalar**,PetscScalar**,AppCtx*); 80c4762a1bSJed Brown static PetscErrorCode FormFunctionPicardLocal(DMDALocalInfo*,PetscScalar**,PetscScalar**,AppCtx*); 81c4762a1bSJed Brown static PetscErrorCode FormJacobianLocal(DMDALocalInfo*,PetscScalar**,Mat,Mat,AppCtx*); 82c4762a1bSJed Brown static PetscErrorCode NonlinearGS(SNES,Vec,Vec,void*); 83c4762a1bSJed Brown 84c4762a1bSJed Brown typedef struct _n_PreCheck *PreCheck; 85c4762a1bSJed Brown struct _n_PreCheck { 86c4762a1bSJed Brown MPI_Comm comm; 87c4762a1bSJed Brown PetscReal angle; 88c4762a1bSJed Brown Vec Ylast; 89c4762a1bSJed Brown PetscViewer monitor; 90c4762a1bSJed Brown }; 91c4762a1bSJed Brown PetscErrorCode PreCheckCreate(MPI_Comm,PreCheck*); 92c4762a1bSJed Brown PetscErrorCode PreCheckDestroy(PreCheck*); 93c4762a1bSJed Brown PetscErrorCode PreCheckFunction(SNESLineSearch,Vec,Vec,PetscBool*,void*); 94c4762a1bSJed Brown PetscErrorCode PreCheckSetFromOptions(PreCheck); 95c4762a1bSJed Brown 96c4762a1bSJed Brown int main(int argc,char **argv) 97c4762a1bSJed Brown { 98c4762a1bSJed Brown SNES snes; /* nonlinear solver */ 99c4762a1bSJed Brown Vec x,r,b; /* solution, residual, rhs vectors */ 100c4762a1bSJed Brown AppCtx user; /* user-defined work context */ 101c4762a1bSJed Brown PetscInt its; /* iterations for convergence */ 102c4762a1bSJed Brown SNESConvergedReason reason; /* Check convergence */ 103c4762a1bSJed Brown PetscBool alloc_star; /* Only allocate for the STAR stencil */ 104c4762a1bSJed Brown PetscBool write_output; 105c4762a1bSJed Brown char filename[PETSC_MAX_PATH_LEN] = "ex15.vts"; 106c4762a1bSJed Brown PetscReal bratu_lambda_max = 6.81,bratu_lambda_min = 0.; 10785b95db3SBarry Smith DM da; /* distributed array data structure */ 108c4762a1bSJed Brown PreCheck precheck = NULL; /* precheck context for version in this file */ 109c4762a1bSJed Brown PetscInt use_precheck; /* 0=none, 1=version in this file, 2=SNES-provided version */ 110c4762a1bSJed Brown PetscReal precheck_angle; /* When manually setting the SNES-provided precheck function */ 111c4762a1bSJed Brown PetscErrorCode ierr; 112c4762a1bSJed Brown SNESLineSearch linesearch; 113c4762a1bSJed Brown 114c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 115c4762a1bSJed Brown Initialize program 116c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 117c4762a1bSJed Brown 118c4762a1bSJed Brown ierr = PetscInitialize(&argc,&argv,(char*)0,help);if (ierr) return ierr; 119c4762a1bSJed Brown 120c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 121c4762a1bSJed Brown Initialize problem parameters 122c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 123c4762a1bSJed Brown user.lambda = 0.0; user.p = 2.0; user.epsilon = 1e-5; user.source = 0.1; user.jtype = JAC_NEWTON;user.initial=-1; 124c4762a1bSJed Brown user.blocks[0] = 1; user.blocks[1] = 1; user.kappa = 1e-3; 125c4762a1bSJed Brown alloc_star = PETSC_FALSE; 126c4762a1bSJed Brown use_precheck = 0; precheck_angle = 10.; 127c4762a1bSJed Brown user.picard = PETSC_FALSE; 128c4762a1bSJed Brown ierr = PetscOptionsBegin(PETSC_COMM_WORLD,NULL,"p-Bratu options",__FILE__);CHKERRQ(ierr); 129c4762a1bSJed Brown { 130c4762a1bSJed Brown PetscInt two=2; 131c4762a1bSJed Brown ierr = PetscOptionsReal("-lambda","Bratu parameter","",user.lambda,&user.lambda,NULL);CHKERRQ(ierr); 132c4762a1bSJed Brown ierr = PetscOptionsReal("-p","Exponent `p' in p-Laplacian","",user.p,&user.p,NULL);CHKERRQ(ierr); 133c4762a1bSJed Brown ierr = PetscOptionsReal("-epsilon","Strain-regularization in p-Laplacian","",user.epsilon,&user.epsilon,NULL);CHKERRQ(ierr); 134c4762a1bSJed Brown ierr = PetscOptionsReal("-source","Constant source term","",user.source,&user.source,NULL);CHKERRQ(ierr); 135c4762a1bSJed Brown ierr = PetscOptionsEnum("-jtype","Jacobian approximation to assemble","",JacTypes,(PetscEnum)user.jtype,(PetscEnum*)&user.jtype,NULL);CHKERRQ(ierr); 136c4762a1bSJed Brown ierr = PetscOptionsName("-picard","Solve with defect-correction Picard iteration","",&user.picard);CHKERRQ(ierr); 13785b95db3SBarry Smith if (user.picard) { 13885b95db3SBarry Smith user.jtype = JAC_PICARD; 13985b95db3SBarry Smith if (user.p != 3) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"Picard iteration is only supported for p == 3"); 14085b95db3SBarry Smith /* the Picard linearization only requires a 5 point stencil, while the Newton linearization requires a 9 point stencil */ 14185b95db3SBarry Smith /* hence allocating the 5 point stencil gives the same convergence as the 9 point stencil since the extra stencil points are not used */ 142c4762a1bSJed Brown ierr = PetscOptionsBool("-alloc_star","Allocate for STAR stencil (5-point)","",alloc_star,&alloc_star,NULL);CHKERRQ(ierr); 14385b95db3SBarry Smith } 144c4762a1bSJed Brown ierr = PetscOptionsInt("-precheck","Use a pre-check correction intended for use with Picard iteration 1=this version, 2=library","",use_precheck,&use_precheck,NULL);CHKERRQ(ierr); 145c4762a1bSJed Brown ierr = PetscOptionsInt("-initial","Initial conditions type (-1: default, 0: zero-valued, 1: peaked guess)","",user.initial,&user.initial,NULL);CHKERRQ(ierr); 146c4762a1bSJed Brown if (use_precheck == 2) { /* Using library version, get the angle */ 147c4762a1bSJed Brown ierr = PetscOptionsReal("-precheck_angle","Angle in degrees between successive search directions necessary to activate step correction","",precheck_angle,&precheck_angle,NULL);CHKERRQ(ierr); 148c4762a1bSJed Brown } 149c4762a1bSJed Brown ierr = PetscOptionsIntArray("-blocks","number of coefficient interfaces in x and y direction","",user.blocks,&two,NULL);CHKERRQ(ierr); 150c4762a1bSJed Brown ierr = PetscOptionsReal("-kappa","diffusivity in odd regions","",user.kappa,&user.kappa,NULL);CHKERRQ(ierr); 151c4762a1bSJed Brown ierr = PetscOptionsString("-o","Output solution in vts format","",filename,filename,sizeof(filename),&write_output);CHKERRQ(ierr); 152c4762a1bSJed Brown } 153c4762a1bSJed Brown ierr = PetscOptionsEnd();CHKERRQ(ierr); 154c4762a1bSJed Brown if (user.lambda > bratu_lambda_max || user.lambda < bratu_lambda_min) { 155c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING: lambda %g out of range for p=2\n",(double)user.lambda);CHKERRQ(ierr); 156c4762a1bSJed Brown } 157c4762a1bSJed Brown 158c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 159c4762a1bSJed Brown Create nonlinear solver context 160c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 161c4762a1bSJed Brown ierr = SNESCreate(PETSC_COMM_WORLD,&snes);CHKERRQ(ierr); 162c4762a1bSJed Brown 163c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 164c4762a1bSJed Brown Create distributed array (DMDA) to manage parallel grid and vectors 165c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 16685b95db3SBarry Smith ierr = DMDACreate2d(PETSC_COMM_WORLD,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,alloc_star ? DMDA_STENCIL_STAR : DMDA_STENCIL_BOX,4,4,PETSC_DECIDE,PETSC_DECIDE,1,1,NULL,NULL,&da);CHKERRQ(ierr); 167c4762a1bSJed Brown ierr = DMSetFromOptions(da);CHKERRQ(ierr); 168c4762a1bSJed Brown ierr = DMSetUp(da);CHKERRQ(ierr); 169c4762a1bSJed Brown 170c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 171c4762a1bSJed Brown Extract global vectors from DM; then duplicate for remaining 172c4762a1bSJed Brown vectors that are the same types 173c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 174c4762a1bSJed Brown ierr = DMCreateGlobalVector(da,&x);CHKERRQ(ierr); 175c4762a1bSJed Brown ierr = VecDuplicate(x,&r);CHKERRQ(ierr); 176c4762a1bSJed Brown ierr = VecDuplicate(x,&b);CHKERRQ(ierr); 177c4762a1bSJed Brown 178c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 17985b95db3SBarry Smith User can override with: 180c4762a1bSJed Brown -snes_mf : matrix-free Newton-Krylov method with no preconditioning 181c4762a1bSJed Brown (unless user explicitly sets preconditioner) 182c4762a1bSJed Brown -snes_mf_operator : form preconditioning matrix as set by the user, 183c4762a1bSJed Brown but use matrix-free approx for Jacobian-vector 184c4762a1bSJed Brown products within Newton-Krylov method 185c4762a1bSJed Brown 186c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 187c4762a1bSJed Brown 188c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 189c4762a1bSJed Brown Set local function evaluation routine 190c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 191c4762a1bSJed Brown ierr = DMSetApplicationContext(da, &user);CHKERRQ(ierr); 192c4762a1bSJed Brown ierr = SNESSetDM(snes,da);CHKERRQ(ierr); 193c4762a1bSJed Brown if (user.picard) { 194c4762a1bSJed Brown /* 195c4762a1bSJed Brown This is not really right requiring the user to call SNESSetFunction/Jacobian but the DMDASNESSetPicardLocal() cannot access 196c4762a1bSJed Brown the SNES to set it 197c4762a1bSJed Brown */ 198c4762a1bSJed Brown ierr = DMDASNESSetPicardLocal(da,INSERT_VALUES,(PetscErrorCode (*)(DMDALocalInfo*,void*,void*,void*))FormFunctionPicardLocal, 199c4762a1bSJed Brown (PetscErrorCode (*)(DMDALocalInfo*,void*,Mat,Mat,void*))FormJacobianLocal,&user);CHKERRQ(ierr); 200c4762a1bSJed Brown ierr = SNESSetFunction(snes,NULL,SNESPicardComputeFunction,&user);CHKERRQ(ierr); 201c4762a1bSJed Brown ierr = SNESSetJacobian(snes,NULL,NULL,SNESPicardComputeJacobian,&user);CHKERRQ(ierr); 202c4762a1bSJed Brown } else { 203c4762a1bSJed Brown ierr = DMDASNESSetFunctionLocal(da,INSERT_VALUES,(PetscErrorCode (*)(DMDALocalInfo*,void*,void*,void*))FormFunctionLocal,&user);CHKERRQ(ierr); 204c4762a1bSJed Brown ierr = DMDASNESSetJacobianLocal(da,(PetscErrorCode (*)(DMDALocalInfo*,void*,Mat,Mat,void*))FormJacobianLocal,&user);CHKERRQ(ierr); 205c4762a1bSJed Brown } 206c4762a1bSJed Brown 207c4762a1bSJed Brown 208c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 209c4762a1bSJed Brown Customize nonlinear solver; set runtime options 210c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 211c4762a1bSJed Brown ierr = SNESSetFromOptions(snes);CHKERRQ(ierr); 212c4762a1bSJed Brown ierr = SNESSetNGS(snes,NonlinearGS,&user);CHKERRQ(ierr); 213c4762a1bSJed Brown ierr = SNESGetLineSearch(snes, &linesearch);CHKERRQ(ierr); 214c4762a1bSJed Brown /* Set up the precheck context if requested */ 215c4762a1bSJed Brown if (use_precheck == 1) { /* Use the precheck routines in this file */ 216c4762a1bSJed Brown ierr = PreCheckCreate(PETSC_COMM_WORLD,&precheck);CHKERRQ(ierr); 217c4762a1bSJed Brown ierr = PreCheckSetFromOptions(precheck);CHKERRQ(ierr); 218c4762a1bSJed Brown ierr = SNESLineSearchSetPreCheck(linesearch,PreCheckFunction,precheck);CHKERRQ(ierr); 219c4762a1bSJed Brown } else if (use_precheck == 2) { /* Use the version provided by the library */ 220c4762a1bSJed Brown ierr = SNESLineSearchSetPreCheck(linesearch,SNESLineSearchPreCheckPicard,&precheck_angle);CHKERRQ(ierr); 221c4762a1bSJed Brown } 222c4762a1bSJed Brown 223c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 224c4762a1bSJed Brown Evaluate initial guess 225c4762a1bSJed Brown Note: The user should initialize the vector, x, with the initial guess 226c4762a1bSJed Brown for the nonlinear solver prior to calling SNESSolve(). In particular, 227c4762a1bSJed Brown to employ an initial guess of zero, the user should explicitly set 228c4762a1bSJed Brown this vector to zero by calling VecSet(). 229c4762a1bSJed Brown */ 230c4762a1bSJed Brown 231c4762a1bSJed Brown ierr = FormInitialGuess(&user,da,x);CHKERRQ(ierr); 232c4762a1bSJed Brown ierr = FormRHS(&user,da,b);CHKERRQ(ierr); 233c4762a1bSJed Brown 234c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 235c4762a1bSJed Brown Solve nonlinear system 236c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 237c4762a1bSJed Brown ierr = SNESSolve(snes,b,x);CHKERRQ(ierr); 238c4762a1bSJed Brown ierr = SNESGetIterationNumber(snes,&its);CHKERRQ(ierr); 239c4762a1bSJed Brown ierr = SNESGetConvergedReason(snes,&reason);CHKERRQ(ierr); 240c4762a1bSJed Brown 241c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD,"%s Number of nonlinear iterations = %D\n",SNESConvergedReasons[reason],its);CHKERRQ(ierr); 242c4762a1bSJed Brown 243c4762a1bSJed Brown if (write_output) { 244c4762a1bSJed Brown PetscViewer viewer; 245c4762a1bSJed Brown ierr = PetscViewerVTKOpen(PETSC_COMM_WORLD,filename,FILE_MODE_WRITE,&viewer);CHKERRQ(ierr); 246c4762a1bSJed Brown ierr = VecView(x,viewer);CHKERRQ(ierr); 247c4762a1bSJed Brown ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 248c4762a1bSJed Brown } 249c4762a1bSJed Brown 250c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 251c4762a1bSJed Brown Free work space. All PETSc objects should be destroyed when they 252c4762a1bSJed Brown are no longer needed. 253c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 254c4762a1bSJed Brown 255c4762a1bSJed Brown ierr = VecDestroy(&x);CHKERRQ(ierr); 256c4762a1bSJed Brown ierr = VecDestroy(&r);CHKERRQ(ierr); 257c4762a1bSJed Brown ierr = VecDestroy(&b);CHKERRQ(ierr); 258c4762a1bSJed Brown ierr = SNESDestroy(&snes);CHKERRQ(ierr); 259c4762a1bSJed Brown ierr = DMDestroy(&da);CHKERRQ(ierr); 260c4762a1bSJed Brown ierr = PreCheckDestroy(&precheck);CHKERRQ(ierr); 261c4762a1bSJed Brown ierr = PetscFinalize(); 262c4762a1bSJed Brown return ierr; 263c4762a1bSJed Brown } 264c4762a1bSJed Brown 265c4762a1bSJed Brown /* ------------------------------------------------------------------- */ 266c4762a1bSJed Brown /* 267c4762a1bSJed Brown FormInitialGuess - Forms initial approximation. 268c4762a1bSJed Brown 269c4762a1bSJed Brown Input Parameters: 270c4762a1bSJed Brown user - user-defined application context 271c4762a1bSJed Brown X - vector 272c4762a1bSJed Brown 273c4762a1bSJed Brown Output Parameter: 274c4762a1bSJed Brown X - vector 275c4762a1bSJed Brown */ 276c4762a1bSJed Brown static PetscErrorCode FormInitialGuess(AppCtx *user,DM da,Vec X) 277c4762a1bSJed Brown { 278c4762a1bSJed Brown PetscInt i,j,Mx,My,xs,ys,xm,ym; 279c4762a1bSJed Brown PetscErrorCode ierr; 280c4762a1bSJed Brown PetscReal temp1,temp,hx,hy; 281c4762a1bSJed Brown PetscScalar **x; 282c4762a1bSJed Brown 283c4762a1bSJed Brown PetscFunctionBeginUser; 284c4762a1bSJed Brown ierr = DMDAGetInfo(da,PETSC_IGNORE,&Mx,&My,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE);CHKERRQ(ierr); 285c4762a1bSJed Brown 286c4762a1bSJed Brown hx = 1.0/(PetscReal)(Mx-1); 287c4762a1bSJed Brown hy = 1.0/(PetscReal)(My-1); 288c4762a1bSJed Brown temp1 = user->lambda / (user->lambda + 1.); 289c4762a1bSJed Brown 290c4762a1bSJed Brown /* 291c4762a1bSJed Brown Get a pointer to vector data. 292c4762a1bSJed Brown - For default PETSc vectors, VecGetArray() returns a pointer to 293c4762a1bSJed Brown the data array. Otherwise, the routine is implementation dependent. 294c4762a1bSJed Brown - You MUST call VecRestoreArray() when you no longer need access to 295c4762a1bSJed Brown the array. 296c4762a1bSJed Brown */ 297c4762a1bSJed Brown ierr = DMDAVecGetArray(da,X,&x);CHKERRQ(ierr); 298c4762a1bSJed Brown 299c4762a1bSJed Brown /* 300c4762a1bSJed Brown Get local grid boundaries (for 2-dimensional DA): 301c4762a1bSJed Brown xs, ys - starting grid indices (no ghost points) 302c4762a1bSJed Brown xm, ym - widths of local grid (no ghost points) 303c4762a1bSJed Brown 304c4762a1bSJed Brown */ 305c4762a1bSJed Brown ierr = DMDAGetCorners(da,&xs,&ys,NULL,&xm,&ym,NULL);CHKERRQ(ierr); 306c4762a1bSJed Brown 307c4762a1bSJed Brown /* 308c4762a1bSJed Brown Compute initial guess over the locally owned part of the grid 309c4762a1bSJed Brown */ 310c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 311c4762a1bSJed Brown temp = (PetscReal)(PetscMin(j,My-j-1))*hy; 312c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 313c4762a1bSJed Brown if (i == 0 || j == 0 || i == Mx-1 || j == My-1) { 314c4762a1bSJed Brown /* boundary conditions are all zero Dirichlet */ 315c4762a1bSJed Brown x[j][i] = 0.0; 316c4762a1bSJed Brown } else { 317c4762a1bSJed Brown if (user->initial == -1) { 318c4762a1bSJed Brown if (user->lambda != 0) { 319c4762a1bSJed Brown x[j][i] = temp1*PetscSqrtReal(PetscMin((PetscReal)(PetscMin(i,Mx-i-1))*hx,temp)); 320c4762a1bSJed Brown } else { 321c4762a1bSJed Brown /* The solution above is an exact solution for lambda=0, this avoids "accidentally" starting 322c4762a1bSJed Brown * with an exact solution. */ 323c4762a1bSJed Brown const PetscReal 324c4762a1bSJed Brown xx = 2*(PetscReal)i/(Mx-1) - 1, 325c4762a1bSJed Brown yy = 2*(PetscReal)j/(My-1) - 1; 326c4762a1bSJed Brown x[j][i] = (1 - xx*xx) * (1-yy*yy) * xx * yy; 327c4762a1bSJed Brown } 328c4762a1bSJed Brown } else if (user->initial == 0) { 329c4762a1bSJed Brown x[j][i] = 0.; 330c4762a1bSJed Brown } else if (user->initial == 1) { 331c4762a1bSJed Brown const PetscReal 332c4762a1bSJed Brown xx = 2*(PetscReal)i/(Mx-1) - 1, 333c4762a1bSJed Brown yy = 2*(PetscReal)j/(My-1) - 1; 334c4762a1bSJed Brown x[j][i] = (1 - xx*xx) * (1-yy*yy) * xx * yy; 335c4762a1bSJed Brown } else { 336c4762a1bSJed Brown if (user->lambda != 0) { 337c4762a1bSJed Brown x[j][i] = temp1*PetscSqrtReal(PetscMin((PetscReal)(PetscMin(i,Mx-i-1))*hx,temp)); 338c4762a1bSJed Brown } else { 339c4762a1bSJed Brown x[j][i] = 0.5*PetscSqrtReal(PetscMin((PetscReal)(PetscMin(i,Mx-i-1))*hx,temp)); 340c4762a1bSJed Brown } 341c4762a1bSJed Brown } 342c4762a1bSJed Brown } 343c4762a1bSJed Brown } 344c4762a1bSJed Brown } 345c4762a1bSJed Brown /* 346c4762a1bSJed Brown Restore vector 347c4762a1bSJed Brown */ 348c4762a1bSJed Brown ierr = DMDAVecRestoreArray(da,X,&x);CHKERRQ(ierr); 349c4762a1bSJed Brown PetscFunctionReturn(0); 350c4762a1bSJed Brown } 351c4762a1bSJed Brown 352c4762a1bSJed Brown /* 353c4762a1bSJed Brown FormRHS - Forms constant RHS for the problem. 354c4762a1bSJed Brown 355c4762a1bSJed Brown Input Parameters: 356c4762a1bSJed Brown user - user-defined application context 357c4762a1bSJed Brown B - RHS vector 358c4762a1bSJed Brown 359c4762a1bSJed Brown Output Parameter: 360c4762a1bSJed Brown B - vector 361c4762a1bSJed Brown */ 362c4762a1bSJed Brown static PetscErrorCode FormRHS(AppCtx *user,DM da,Vec B) 363c4762a1bSJed Brown { 364c4762a1bSJed Brown PetscInt i,j,Mx,My,xs,ys,xm,ym; 365c4762a1bSJed Brown PetscErrorCode ierr; 366c4762a1bSJed Brown PetscReal hx,hy; 367c4762a1bSJed Brown PetscScalar **b; 368c4762a1bSJed Brown 369c4762a1bSJed Brown PetscFunctionBeginUser; 370c4762a1bSJed Brown ierr = DMDAGetInfo(da,PETSC_IGNORE,&Mx,&My,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE);CHKERRQ(ierr); 371c4762a1bSJed Brown 372c4762a1bSJed Brown hx = 1.0/(PetscReal)(Mx-1); 373c4762a1bSJed Brown hy = 1.0/(PetscReal)(My-1); 374c4762a1bSJed Brown ierr = DMDAVecGetArray(da,B,&b);CHKERRQ(ierr); 375c4762a1bSJed Brown ierr = DMDAGetCorners(da,&xs,&ys,NULL,&xm,&ym,NULL);CHKERRQ(ierr); 376c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 377c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 378c4762a1bSJed Brown if (i == 0 || j == 0 || i == Mx-1 || j == My-1) { 379c4762a1bSJed Brown b[j][i] = 0.0; 380c4762a1bSJed Brown } else { 381c4762a1bSJed Brown b[j][i] = hx*hy*user->source; 382c4762a1bSJed Brown } 383c4762a1bSJed Brown } 384c4762a1bSJed Brown } 385c4762a1bSJed Brown ierr = DMDAVecRestoreArray(da,B,&b);CHKERRQ(ierr); 386c4762a1bSJed Brown PetscFunctionReturn(0); 387c4762a1bSJed Brown } 388c4762a1bSJed Brown 389c4762a1bSJed Brown PETSC_STATIC_INLINE PetscReal kappa(const AppCtx *ctx,PetscReal x,PetscReal y) 390c4762a1bSJed Brown { 391c4762a1bSJed Brown return (((PetscInt)(x*ctx->blocks[0])) + ((PetscInt)(y*ctx->blocks[1]))) % 2 ? ctx->kappa : 1.0; 392c4762a1bSJed Brown } 393c4762a1bSJed Brown /* p-Laplacian diffusivity */ 394c4762a1bSJed Brown PETSC_STATIC_INLINE PetscScalar eta(const AppCtx *ctx,PetscReal x,PetscReal y,PetscScalar ux,PetscScalar uy) 395c4762a1bSJed Brown { 396c4762a1bSJed Brown return kappa(ctx,x,y) * PetscPowScalar(PetscSqr(ctx->epsilon)+0.5*(ux*ux + uy*uy),0.5*(ctx->p-2.)); 397c4762a1bSJed Brown } 398c4762a1bSJed Brown PETSC_STATIC_INLINE PetscScalar deta(const AppCtx *ctx,PetscReal x,PetscReal y,PetscScalar ux,PetscScalar uy) 399c4762a1bSJed Brown { 400c4762a1bSJed Brown return (ctx->p == 2) 401c4762a1bSJed Brown ? 0 402c4762a1bSJed Brown : kappa(ctx,x,y)*PetscPowScalar(PetscSqr(ctx->epsilon)+0.5*(ux*ux + uy*uy),0.5*(ctx->p-4)) * 0.5 * (ctx->p-2.); 403c4762a1bSJed Brown } 404c4762a1bSJed Brown 405c4762a1bSJed Brown 406c4762a1bSJed Brown /* ------------------------------------------------------------------- */ 407c4762a1bSJed Brown /* 408c4762a1bSJed Brown FormFunctionLocal - Evaluates nonlinear function, F(x). 409c4762a1bSJed Brown */ 410c4762a1bSJed Brown static PetscErrorCode FormFunctionLocal(DMDALocalInfo *info,PetscScalar **x,PetscScalar **f,AppCtx *user) 411c4762a1bSJed Brown { 412c4762a1bSJed Brown PetscReal hx,hy,dhx,dhy,sc; 413c4762a1bSJed Brown PetscInt i,j; 414c4762a1bSJed Brown PetscScalar eu; 415c4762a1bSJed Brown PetscErrorCode ierr; 416c4762a1bSJed Brown 417c4762a1bSJed Brown 418c4762a1bSJed Brown PetscFunctionBeginUser; 419c4762a1bSJed Brown hx = 1.0/(PetscReal)(info->mx-1); 420c4762a1bSJed Brown hy = 1.0/(PetscReal)(info->my-1); 421c4762a1bSJed Brown sc = hx*hy*user->lambda; 422c4762a1bSJed Brown dhx = 1/hx; 423c4762a1bSJed Brown dhy = 1/hy; 424c4762a1bSJed Brown /* 425c4762a1bSJed Brown Compute function over the locally owned part of the grid 426c4762a1bSJed Brown */ 427c4762a1bSJed Brown for (j=info->ys; j<info->ys+info->ym; j++) { 428c4762a1bSJed Brown for (i=info->xs; i<info->xs+info->xm; i++) { 429c4762a1bSJed Brown PetscReal xx = i*hx,yy = j*hy; 430c4762a1bSJed Brown if (i == 0 || j == 0 || i == info->mx-1 || j == info->my-1) { 431c4762a1bSJed Brown f[j][i] = x[j][i]; 432c4762a1bSJed Brown } else { 433c4762a1bSJed Brown const PetscScalar 434c4762a1bSJed Brown u = x[j][i], 435c4762a1bSJed Brown ux_E = dhx*(x[j][i+1]-x[j][i]), 436c4762a1bSJed Brown uy_E = 0.25*dhy*(x[j+1][i]+x[j+1][i+1]-x[j-1][i]-x[j-1][i+1]), 437c4762a1bSJed Brown ux_W = dhx*(x[j][i]-x[j][i-1]), 438c4762a1bSJed Brown uy_W = 0.25*dhy*(x[j+1][i-1]+x[j+1][i]-x[j-1][i-1]-x[j-1][i]), 439c4762a1bSJed Brown ux_N = 0.25*dhx*(x[j][i+1]+x[j+1][i+1]-x[j][i-1]-x[j+1][i-1]), 440c4762a1bSJed Brown uy_N = dhy*(x[j+1][i]-x[j][i]), 441c4762a1bSJed Brown ux_S = 0.25*dhx*(x[j-1][i+1]+x[j][i+1]-x[j-1][i-1]-x[j][i-1]), 442c4762a1bSJed Brown uy_S = dhy*(x[j][i]-x[j-1][i]), 443c4762a1bSJed Brown e_E = eta(user,xx,yy,ux_E,uy_E), 444c4762a1bSJed Brown e_W = eta(user,xx,yy,ux_W,uy_W), 445c4762a1bSJed Brown e_N = eta(user,xx,yy,ux_N,uy_N), 446c4762a1bSJed Brown e_S = eta(user,xx,yy,ux_S,uy_S), 447c4762a1bSJed Brown uxx = -hy * (e_E*ux_E - e_W*ux_W), 448c4762a1bSJed Brown uyy = -hx * (e_N*uy_N - e_S*uy_S); 449c4762a1bSJed Brown if (sc) eu = PetscExpScalar(u); 450c4762a1bSJed Brown else eu = 0.; 451c4762a1bSJed Brown /** For p=2, these terms decay to: 452c4762a1bSJed Brown * uxx = (2.0*u - x[j][i-1] - x[j][i+1])*hydhx 453c4762a1bSJed Brown * uyy = (2.0*u - x[j-1][i] - x[j+1][i])*hxdhy 454c4762a1bSJed Brown **/ 455c4762a1bSJed Brown f[j][i] = uxx + uyy - sc*eu; 456c4762a1bSJed Brown } 457c4762a1bSJed Brown } 458c4762a1bSJed Brown } 459c4762a1bSJed Brown ierr = PetscLogFlops(info->xm*info->ym*(72.0));CHKERRQ(ierr); 460c4762a1bSJed Brown PetscFunctionReturn(0); 461c4762a1bSJed Brown } 462c4762a1bSJed Brown 463c4762a1bSJed Brown /* 464c4762a1bSJed Brown This is the opposite sign of the part of FormFunctionLocal that excludes the A(x) x part of the operation, 465c4762a1bSJed Brown that is FormFunction applies A(x) x - b(x) while this applies b(x) because for Picard we think of it as solving A(x) x = b(x) 466c4762a1bSJed Brown 467c4762a1bSJed Brown */ 468c4762a1bSJed Brown static PetscErrorCode FormFunctionPicardLocal(DMDALocalInfo *info,PetscScalar **x,PetscScalar **f,AppCtx *user) 469c4762a1bSJed Brown { 470c4762a1bSJed Brown PetscReal hx,hy,sc; 471c4762a1bSJed Brown PetscInt i,j; 472c4762a1bSJed Brown PetscErrorCode ierr; 473c4762a1bSJed Brown 474c4762a1bSJed Brown PetscFunctionBeginUser; 475c4762a1bSJed Brown hx = 1.0/(PetscReal)(info->mx-1); 476c4762a1bSJed Brown hy = 1.0/(PetscReal)(info->my-1); 477c4762a1bSJed Brown sc = hx*hy*user->lambda; 478c4762a1bSJed Brown /* 479c4762a1bSJed Brown Compute function over the locally owned part of the grid 480c4762a1bSJed Brown */ 481c4762a1bSJed Brown for (j=info->ys; j<info->ys+info->ym; j++) { 482c4762a1bSJed Brown for (i=info->xs; i<info->xs+info->xm; i++) { 483c4762a1bSJed Brown if (!(i == 0 || j == 0 || i == info->mx-1 || j == info->my-1)) { 484c4762a1bSJed Brown const PetscScalar u = x[j][i]; 485c4762a1bSJed Brown f[j][i] = sc*PetscExpScalar(u); 486*0df40c35SBarry Smith } else { 487*0df40c35SBarry Smith f[j][i] = 0.0; /* this is zero because the A(x) x term forces the x to be zero on the boundary */ 488c4762a1bSJed Brown } 489c4762a1bSJed Brown } 490c4762a1bSJed Brown } 491c4762a1bSJed Brown ierr = PetscLogFlops(info->xm*info->ym*2.0);CHKERRQ(ierr); 492c4762a1bSJed Brown PetscFunctionReturn(0); 493c4762a1bSJed Brown } 494c4762a1bSJed Brown 495c4762a1bSJed Brown /* 496c4762a1bSJed Brown FormJacobianLocal - Evaluates Jacobian matrix. 497c4762a1bSJed Brown */ 498c4762a1bSJed Brown static PetscErrorCode FormJacobianLocal(DMDALocalInfo *info,PetscScalar **x,Mat J,Mat B,AppCtx *user) 499c4762a1bSJed Brown { 500c4762a1bSJed Brown PetscErrorCode ierr; 501c4762a1bSJed Brown PetscInt i,j; 502c4762a1bSJed Brown MatStencil col[9],row; 503c4762a1bSJed Brown PetscScalar v[9]; 504c4762a1bSJed Brown PetscReal hx,hy,hxdhy,hydhx,dhx,dhy,sc; 505c4762a1bSJed Brown 506c4762a1bSJed Brown PetscFunctionBeginUser; 507*0df40c35SBarry Smith ierr = MatZeroEntries(B);CHKERRQ(ierr); 508c4762a1bSJed Brown hx = 1.0/(PetscReal)(info->mx-1); 509c4762a1bSJed Brown hy = 1.0/(PetscReal)(info->my-1); 510c4762a1bSJed Brown sc = hx*hy*user->lambda; 511c4762a1bSJed Brown dhx = 1/hx; 512c4762a1bSJed Brown dhy = 1/hy; 513c4762a1bSJed Brown hxdhy = hx/hy; 514c4762a1bSJed Brown hydhx = hy/hx; 515c4762a1bSJed Brown 516c4762a1bSJed Brown /* 517c4762a1bSJed Brown Compute entries for the locally owned part of the Jacobian. 518c4762a1bSJed Brown - PETSc parallel matrix formats are partitioned by 519c4762a1bSJed Brown contiguous chunks of rows across the processors. 520c4762a1bSJed Brown - Each processor needs to insert only elements that it owns 521c4762a1bSJed Brown locally (but any non-local elements will be sent to the 522c4762a1bSJed Brown appropriate processor during matrix assembly). 523c4762a1bSJed Brown - Here, we set all entries for a particular row at once. 524c4762a1bSJed Brown */ 525c4762a1bSJed Brown for (j=info->ys; j<info->ys+info->ym; j++) { 526c4762a1bSJed Brown for (i=info->xs; i<info->xs+info->xm; i++) { 527c4762a1bSJed Brown PetscReal xx = i*hx,yy = j*hy; 528c4762a1bSJed Brown row.j = j; row.i = i; 529c4762a1bSJed Brown /* boundary points */ 530c4762a1bSJed Brown if (i == 0 || j == 0 || i == info->mx-1 || j == info->my-1) { 531c4762a1bSJed Brown v[0] = 1.0; 532c4762a1bSJed Brown ierr = MatSetValuesStencil(B,1,&row,1,&row,v,INSERT_VALUES);CHKERRQ(ierr); 533c4762a1bSJed Brown } else { 534c4762a1bSJed Brown /* interior grid points */ 535c4762a1bSJed Brown const PetscScalar 536c4762a1bSJed Brown ux_E = dhx*(x[j][i+1]-x[j][i]), 537c4762a1bSJed Brown uy_E = 0.25*dhy*(x[j+1][i]+x[j+1][i+1]-x[j-1][i]-x[j-1][i+1]), 538c4762a1bSJed Brown ux_W = dhx*(x[j][i]-x[j][i-1]), 539c4762a1bSJed Brown uy_W = 0.25*dhy*(x[j+1][i-1]+x[j+1][i]-x[j-1][i-1]-x[j-1][i]), 540c4762a1bSJed Brown ux_N = 0.25*dhx*(x[j][i+1]+x[j+1][i+1]-x[j][i-1]-x[j+1][i-1]), 541c4762a1bSJed Brown uy_N = dhy*(x[j+1][i]-x[j][i]), 542c4762a1bSJed Brown ux_S = 0.25*dhx*(x[j-1][i+1]+x[j][i+1]-x[j-1][i-1]-x[j][i-1]), 543c4762a1bSJed Brown uy_S = dhy*(x[j][i]-x[j-1][i]), 544c4762a1bSJed Brown u = x[j][i], 545c4762a1bSJed Brown e_E = eta(user,xx,yy,ux_E,uy_E), 546c4762a1bSJed Brown e_W = eta(user,xx,yy,ux_W,uy_W), 547c4762a1bSJed Brown e_N = eta(user,xx,yy,ux_N,uy_N), 548c4762a1bSJed Brown e_S = eta(user,xx,yy,ux_S,uy_S), 549c4762a1bSJed Brown de_E = deta(user,xx,yy,ux_E,uy_E), 550c4762a1bSJed Brown de_W = deta(user,xx,yy,ux_W,uy_W), 551c4762a1bSJed Brown de_N = deta(user,xx,yy,ux_N,uy_N), 552c4762a1bSJed Brown de_S = deta(user,xx,yy,ux_S,uy_S), 553c4762a1bSJed Brown skew_E = de_E*ux_E*uy_E, 554c4762a1bSJed Brown skew_W = de_W*ux_W*uy_W, 555c4762a1bSJed Brown skew_N = de_N*ux_N*uy_N, 556c4762a1bSJed Brown skew_S = de_S*ux_S*uy_S, 557c4762a1bSJed Brown cross_EW = 0.25*(skew_E - skew_W), 558c4762a1bSJed Brown cross_NS = 0.25*(skew_N - skew_S), 559c4762a1bSJed Brown newt_E = e_E+de_E*PetscSqr(ux_E), 560c4762a1bSJed Brown newt_W = e_W+de_W*PetscSqr(ux_W), 561c4762a1bSJed Brown newt_N = e_N+de_N*PetscSqr(uy_N), 562c4762a1bSJed Brown newt_S = e_S+de_S*PetscSqr(uy_S); 563c4762a1bSJed Brown /* interior grid points */ 564c4762a1bSJed Brown switch (user->jtype) { 565c4762a1bSJed Brown case JAC_BRATU: 566c4762a1bSJed Brown /* Jacobian from p=2 */ 567c4762a1bSJed Brown v[0] = -hxdhy; col[0].j = j-1; col[0].i = i; 568c4762a1bSJed Brown v[1] = -hydhx; col[1].j = j; col[1].i = i-1; 569c4762a1bSJed Brown v[2] = 2.0*(hydhx + hxdhy) - sc*PetscExpScalar(u); col[2].j = row.j; col[2].i = row.i; 570c4762a1bSJed Brown v[3] = -hydhx; col[3].j = j; col[3].i = i+1; 571c4762a1bSJed Brown v[4] = -hxdhy; col[4].j = j+1; col[4].i = i; 572c4762a1bSJed Brown ierr = MatSetValuesStencil(B,1,&row,5,col,v,INSERT_VALUES);CHKERRQ(ierr); 573c4762a1bSJed Brown break; 574c4762a1bSJed Brown case JAC_PICARD: 575c4762a1bSJed Brown /* Jacobian arising from Picard linearization */ 576c4762a1bSJed Brown v[0] = -hxdhy*e_S; col[0].j = j-1; col[0].i = i; 577c4762a1bSJed Brown v[1] = -hydhx*e_W; col[1].j = j; col[1].i = i-1; 578c4762a1bSJed Brown v[2] = (e_W+e_E)*hydhx + (e_S+e_N)*hxdhy; col[2].j = row.j; col[2].i = row.i; 579c4762a1bSJed Brown v[3] = -hydhx*e_E; col[3].j = j; col[3].i = i+1; 580c4762a1bSJed Brown v[4] = -hxdhy*e_N; col[4].j = j+1; col[4].i = i; 581c4762a1bSJed Brown ierr = MatSetValuesStencil(B,1,&row,5,col,v,INSERT_VALUES);CHKERRQ(ierr); 582c4762a1bSJed Brown break; 583c4762a1bSJed Brown case JAC_STAR: 584c4762a1bSJed Brown /* Full Jacobian, but only a star stencil */ 585c4762a1bSJed Brown col[0].j = j-1; col[0].i = i; 586c4762a1bSJed Brown col[1].j = j; col[1].i = i-1; 587c4762a1bSJed Brown col[2].j = j; col[2].i = i; 588c4762a1bSJed Brown col[3].j = j; col[3].i = i+1; 589c4762a1bSJed Brown col[4].j = j+1; col[4].i = i; 590c4762a1bSJed Brown v[0] = -hxdhy*newt_S + cross_EW; 591c4762a1bSJed Brown v[1] = -hydhx*newt_W + cross_NS; 592c4762a1bSJed Brown v[2] = hxdhy*(newt_N + newt_S) + hydhx*(newt_E + newt_W) - sc*PetscExpScalar(u); 593c4762a1bSJed Brown v[3] = -hydhx*newt_E - cross_NS; 594c4762a1bSJed Brown v[4] = -hxdhy*newt_N - cross_EW; 595c4762a1bSJed Brown ierr = MatSetValuesStencil(B,1,&row,5,col,v,INSERT_VALUES);CHKERRQ(ierr); 596c4762a1bSJed Brown break; 597c4762a1bSJed Brown case JAC_NEWTON: 598c4762a1bSJed Brown /** The Jacobian is 599c4762a1bSJed Brown * 600c4762a1bSJed Brown * -div [ eta (grad u) + deta (grad u0 . grad u) grad u0 ] - (eE u0) u 601c4762a1bSJed Brown * 602c4762a1bSJed Brown **/ 603c4762a1bSJed Brown col[0].j = j-1; col[0].i = i-1; 604c4762a1bSJed Brown col[1].j = j-1; col[1].i = i; 605c4762a1bSJed Brown col[2].j = j-1; col[2].i = i+1; 606c4762a1bSJed Brown col[3].j = j; col[3].i = i-1; 607c4762a1bSJed Brown col[4].j = j; col[4].i = i; 608c4762a1bSJed Brown col[5].j = j; col[5].i = i+1; 609c4762a1bSJed Brown col[6].j = j+1; col[6].i = i-1; 610c4762a1bSJed Brown col[7].j = j+1; col[7].i = i; 611c4762a1bSJed Brown col[8].j = j+1; col[8].i = i+1; 612c4762a1bSJed Brown v[0] = -0.25*(skew_S + skew_W); 613c4762a1bSJed Brown v[1] = -hxdhy*newt_S + cross_EW; 614c4762a1bSJed Brown v[2] = 0.25*(skew_S + skew_E); 615c4762a1bSJed Brown v[3] = -hydhx*newt_W + cross_NS; 616c4762a1bSJed Brown v[4] = hxdhy*(newt_N + newt_S) + hydhx*(newt_E + newt_W) - sc*PetscExpScalar(u); 617c4762a1bSJed Brown v[5] = -hydhx*newt_E - cross_NS; 618c4762a1bSJed Brown v[6] = 0.25*(skew_N + skew_W); 619c4762a1bSJed Brown v[7] = -hxdhy*newt_N - cross_EW; 620c4762a1bSJed Brown v[8] = -0.25*(skew_N + skew_E); 621c4762a1bSJed Brown ierr = MatSetValuesStencil(B,1,&row,9,col,v,INSERT_VALUES);CHKERRQ(ierr); 622c4762a1bSJed Brown break; 623c4762a1bSJed Brown default: 624c4762a1bSJed Brown SETERRQ1(PetscObjectComm((PetscObject)info->da),PETSC_ERR_SUP,"Jacobian type %d not implemented",user->jtype); 625c4762a1bSJed Brown } 626c4762a1bSJed Brown } 627c4762a1bSJed Brown } 628c4762a1bSJed Brown } 629c4762a1bSJed Brown 630c4762a1bSJed Brown /* 631c4762a1bSJed Brown Assemble matrix, using the 2-step process: 632c4762a1bSJed Brown MatAssemblyBegin(), MatAssemblyEnd(). 633c4762a1bSJed Brown */ 634c4762a1bSJed Brown ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 635c4762a1bSJed Brown ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 636c4762a1bSJed Brown 637c4762a1bSJed Brown if (J != B) { 638c4762a1bSJed Brown ierr = MatAssemblyBegin(J,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 639c4762a1bSJed Brown ierr = MatAssemblyEnd(J,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 640c4762a1bSJed Brown } 641c4762a1bSJed Brown 642c4762a1bSJed Brown /* 643c4762a1bSJed Brown Tell the matrix we will never add a new nonzero location to the 644c4762a1bSJed Brown matrix. If we do, it will generate an error. 645c4762a1bSJed Brown */ 646c4762a1bSJed Brown if (user->jtype == JAC_NEWTON) { 647c4762a1bSJed Brown ierr = PetscLogFlops(info->xm*info->ym*(131.0));CHKERRQ(ierr); 648c4762a1bSJed Brown } 649c4762a1bSJed Brown PetscFunctionReturn(0); 650c4762a1bSJed Brown } 651c4762a1bSJed Brown 652c4762a1bSJed Brown /*********************************************************** 653c4762a1bSJed Brown * PreCheck implementation 654c4762a1bSJed Brown ***********************************************************/ 655c4762a1bSJed Brown PetscErrorCode PreCheckSetFromOptions(PreCheck precheck) 656c4762a1bSJed Brown { 657c4762a1bSJed Brown PetscErrorCode ierr; 658c4762a1bSJed Brown PetscBool flg; 659c4762a1bSJed Brown 660c4762a1bSJed Brown PetscFunctionBeginUser; 661c4762a1bSJed Brown ierr = PetscOptionsBegin(precheck->comm,NULL,"PreCheck Options","none");CHKERRQ(ierr); 662c4762a1bSJed Brown ierr = PetscOptionsReal("-precheck_angle","Angle in degrees between successive search directions necessary to activate step correction","",precheck->angle,&precheck->angle,NULL);CHKERRQ(ierr); 663c4762a1bSJed Brown flg = PETSC_FALSE; 664c4762a1bSJed Brown ierr = PetscOptionsBool("-precheck_monitor","Monitor choices made by precheck routine","",flg,&flg,NULL);CHKERRQ(ierr); 665c4762a1bSJed Brown if (flg) { 666c4762a1bSJed Brown ierr = PetscViewerASCIIOpen(precheck->comm,"stdout",&precheck->monitor);CHKERRQ(ierr); 667c4762a1bSJed Brown } 668c4762a1bSJed Brown ierr = PetscOptionsEnd();CHKERRQ(ierr); 669c4762a1bSJed Brown PetscFunctionReturn(0); 670c4762a1bSJed Brown } 671c4762a1bSJed Brown 672c4762a1bSJed Brown /* 673c4762a1bSJed Brown Compare the direction of the current and previous step, modify the current step accordingly 674c4762a1bSJed Brown */ 675c4762a1bSJed Brown PetscErrorCode PreCheckFunction(SNESLineSearch linesearch,Vec X,Vec Y,PetscBool *changed, void *ctx) 676c4762a1bSJed Brown { 677c4762a1bSJed Brown PetscErrorCode ierr; 678c4762a1bSJed Brown PreCheck precheck; 679c4762a1bSJed Brown Vec Ylast; 680c4762a1bSJed Brown PetscScalar dot; 681c4762a1bSJed Brown PetscInt iter; 682c4762a1bSJed Brown PetscReal ynorm,ylastnorm,theta,angle_radians; 683c4762a1bSJed Brown SNES snes; 684c4762a1bSJed Brown 685c4762a1bSJed Brown PetscFunctionBeginUser; 686c4762a1bSJed Brown ierr = SNESLineSearchGetSNES(linesearch, &snes);CHKERRQ(ierr); 687c4762a1bSJed Brown precheck = (PreCheck)ctx; 688c4762a1bSJed Brown if (!precheck->Ylast) {ierr = VecDuplicate(Y,&precheck->Ylast);CHKERRQ(ierr);} 689c4762a1bSJed Brown Ylast = precheck->Ylast; 690c4762a1bSJed Brown ierr = SNESGetIterationNumber(snes,&iter);CHKERRQ(ierr); 691c4762a1bSJed Brown if (iter < 1) { 692c4762a1bSJed Brown ierr = VecCopy(Y,Ylast);CHKERRQ(ierr); 693c4762a1bSJed Brown *changed = PETSC_FALSE; 694c4762a1bSJed Brown PetscFunctionReturn(0); 695c4762a1bSJed Brown } 696c4762a1bSJed Brown 697c4762a1bSJed Brown ierr = VecDot(Y,Ylast,&dot);CHKERRQ(ierr); 698c4762a1bSJed Brown ierr = VecNorm(Y,NORM_2,&ynorm);CHKERRQ(ierr); 699c4762a1bSJed Brown ierr = VecNorm(Ylast,NORM_2,&ylastnorm);CHKERRQ(ierr); 700c4762a1bSJed Brown /* Compute the angle between the vectors Y and Ylast, clip to keep inside the domain of acos() */ 701c4762a1bSJed Brown theta = PetscAcosReal((PetscReal)PetscClipInterval(PetscAbsScalar(dot) / (ynorm * ylastnorm),-1.0,1.0)); 702c4762a1bSJed Brown angle_radians = precheck->angle * PETSC_PI / 180.; 703c4762a1bSJed Brown if (PetscAbsReal(theta) < angle_radians || PetscAbsReal(theta - PETSC_PI) < angle_radians) { 704c4762a1bSJed Brown /* Modify the step Y */ 705c4762a1bSJed Brown PetscReal alpha,ydiffnorm; 706c4762a1bSJed Brown ierr = VecAXPY(Ylast,-1.0,Y);CHKERRQ(ierr); 707c4762a1bSJed Brown ierr = VecNorm(Ylast,NORM_2,&ydiffnorm);CHKERRQ(ierr); 708c4762a1bSJed Brown alpha = ylastnorm / ydiffnorm; 709c4762a1bSJed Brown ierr = VecCopy(Y,Ylast);CHKERRQ(ierr); 710c4762a1bSJed Brown ierr = VecScale(Y,alpha);CHKERRQ(ierr); 711c4762a1bSJed Brown if (precheck->monitor) { 712c4762a1bSJed Brown ierr = PetscViewerASCIIPrintf(precheck->monitor,"Angle %E degrees less than threshold %g, corrected step by alpha=%g\n",(double)(theta*180./PETSC_PI),(double)precheck->angle,(double)alpha);CHKERRQ(ierr); 713c4762a1bSJed Brown } 714c4762a1bSJed Brown } else { 715c4762a1bSJed Brown ierr = VecCopy(Y,Ylast);CHKERRQ(ierr); 716c4762a1bSJed Brown *changed = PETSC_FALSE; 717c4762a1bSJed Brown if (precheck->monitor) { 718c4762a1bSJed Brown ierr = PetscViewerASCIIPrintf(precheck->monitor,"Angle %E degrees exceeds threshold %g, no correction applied\n",(double)(theta*180./PETSC_PI),(double)precheck->angle);CHKERRQ(ierr); 719c4762a1bSJed Brown } 720c4762a1bSJed Brown } 721c4762a1bSJed Brown PetscFunctionReturn(0); 722c4762a1bSJed Brown } 723c4762a1bSJed Brown 724c4762a1bSJed Brown PetscErrorCode PreCheckDestroy(PreCheck *precheck) 725c4762a1bSJed Brown { 726c4762a1bSJed Brown PetscErrorCode ierr; 727c4762a1bSJed Brown 728c4762a1bSJed Brown PetscFunctionBeginUser; 729c4762a1bSJed Brown if (!*precheck) PetscFunctionReturn(0); 730c4762a1bSJed Brown ierr = VecDestroy(&(*precheck)->Ylast);CHKERRQ(ierr); 731c4762a1bSJed Brown ierr = PetscViewerDestroy(&(*precheck)->monitor);CHKERRQ(ierr); 732c4762a1bSJed Brown ierr = PetscFree(*precheck);CHKERRQ(ierr); 733c4762a1bSJed Brown PetscFunctionReturn(0); 734c4762a1bSJed Brown } 735c4762a1bSJed Brown 736c4762a1bSJed Brown PetscErrorCode PreCheckCreate(MPI_Comm comm,PreCheck *precheck) 737c4762a1bSJed Brown { 738c4762a1bSJed Brown PetscErrorCode ierr; 739c4762a1bSJed Brown 740c4762a1bSJed Brown PetscFunctionBeginUser; 741c4762a1bSJed Brown ierr = PetscNew(precheck);CHKERRQ(ierr); 742c4762a1bSJed Brown 743c4762a1bSJed Brown (*precheck)->comm = comm; 744c4762a1bSJed Brown (*precheck)->angle = 10.; /* only active if angle is less than 10 degrees */ 745c4762a1bSJed Brown PetscFunctionReturn(0); 746c4762a1bSJed Brown } 747c4762a1bSJed Brown 748c4762a1bSJed Brown /* 749c4762a1bSJed Brown Applies some sweeps on nonlinear Gauss-Seidel on each process 750c4762a1bSJed Brown 751c4762a1bSJed Brown */ 752c4762a1bSJed Brown PetscErrorCode NonlinearGS(SNES snes,Vec X, Vec B, void *ctx) 753c4762a1bSJed Brown { 754c4762a1bSJed Brown PetscInt i,j,k,xs,ys,xm,ym,its,tot_its,sweeps,l,m; 755c4762a1bSJed Brown PetscErrorCode ierr; 756c4762a1bSJed Brown PetscReal hx,hy,hxdhy,hydhx,dhx,dhy,sc; 757c4762a1bSJed Brown PetscScalar **x,**b,bij,F,F0=0,J,y,u,eu; 758c4762a1bSJed Brown PetscReal atol,rtol,stol; 759c4762a1bSJed Brown DM da; 760c4762a1bSJed Brown AppCtx *user = (AppCtx*)ctx; 761c4762a1bSJed Brown Vec localX,localB; 762c4762a1bSJed Brown DMDALocalInfo info; 763c4762a1bSJed Brown 764c4762a1bSJed Brown PetscFunctionBeginUser; 765c4762a1bSJed Brown ierr = SNESGetDM(snes,&da);CHKERRQ(ierr); 766c4762a1bSJed Brown ierr = DMDAGetLocalInfo(da,&info);CHKERRQ(ierr); 767c4762a1bSJed Brown 768c4762a1bSJed Brown hx = 1.0/(PetscReal)(info.mx-1); 769c4762a1bSJed Brown hy = 1.0/(PetscReal)(info.my-1); 770c4762a1bSJed Brown sc = hx*hy*user->lambda; 771c4762a1bSJed Brown dhx = 1/hx; 772c4762a1bSJed Brown dhy = 1/hy; 773c4762a1bSJed Brown hxdhy = hx/hy; 774c4762a1bSJed Brown hydhx = hy/hx; 775c4762a1bSJed Brown 776c4762a1bSJed Brown tot_its = 0; 777c4762a1bSJed Brown ierr = SNESNGSGetSweeps(snes,&sweeps);CHKERRQ(ierr); 778c4762a1bSJed Brown ierr = SNESNGSGetTolerances(snes,&atol,&rtol,&stol,&its);CHKERRQ(ierr); 779c4762a1bSJed Brown ierr = DMGetLocalVector(da,&localX);CHKERRQ(ierr); 780c4762a1bSJed Brown if (B) { 781c4762a1bSJed Brown ierr = DMGetLocalVector(da,&localB);CHKERRQ(ierr); 782c4762a1bSJed Brown } 783c4762a1bSJed Brown if (B) { 784c4762a1bSJed Brown ierr = DMGlobalToLocalBegin(da,B,INSERT_VALUES,localB);CHKERRQ(ierr); 785c4762a1bSJed Brown ierr = DMGlobalToLocalEnd(da,B,INSERT_VALUES,localB);CHKERRQ(ierr); 786c4762a1bSJed Brown } 787c4762a1bSJed Brown if (B) ierr = DMDAVecGetArrayRead(da,localB,&b);CHKERRQ(ierr); 788c4762a1bSJed Brown ierr = DMGlobalToLocalBegin(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 789c4762a1bSJed Brown ierr = DMGlobalToLocalEnd(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 790c4762a1bSJed Brown ierr = DMDAVecGetArray(da,localX,&x);CHKERRQ(ierr); 791c4762a1bSJed Brown for (l=0; l<sweeps; l++) { 792c4762a1bSJed Brown /* 793c4762a1bSJed Brown Get local grid boundaries (for 2-dimensional DMDA): 794c4762a1bSJed Brown xs, ys - starting grid indices (no ghost points) 795c4762a1bSJed Brown xm, ym - widths of local grid (no ghost points) 796c4762a1bSJed Brown */ 797c4762a1bSJed Brown ierr = DMDAGetCorners(da,&xs,&ys,NULL,&xm,&ym,NULL);CHKERRQ(ierr); 798c4762a1bSJed Brown for (m=0; m<2; m++) { 799c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 800c4762a1bSJed Brown for (i=xs+(m+j)%2; i<xs+xm; i+=2) { 801c4762a1bSJed Brown PetscReal xx = i*hx,yy = j*hy; 802c4762a1bSJed Brown if (B) bij = b[j][i]; 803c4762a1bSJed Brown else bij = 0.; 804c4762a1bSJed Brown 805c4762a1bSJed Brown if (i == 0 || j == 0 || i == info.mx-1 || j == info.my-1) { 806c4762a1bSJed Brown /* boundary conditions are all zero Dirichlet */ 807c4762a1bSJed Brown x[j][i] = 0.0 + bij; 808c4762a1bSJed Brown } else { 809c4762a1bSJed Brown const PetscScalar 810c4762a1bSJed Brown u_E = x[j][i+1], 811c4762a1bSJed Brown u_W = x[j][i-1], 812c4762a1bSJed Brown u_N = x[j+1][i], 813c4762a1bSJed Brown u_S = x[j-1][i]; 814c4762a1bSJed Brown const PetscScalar 815c4762a1bSJed Brown uy_E = 0.25*dhy*(x[j+1][i]+x[j+1][i+1]-x[j-1][i]-x[j-1][i+1]), 816c4762a1bSJed Brown uy_W = 0.25*dhy*(x[j+1][i-1]+x[j+1][i]-x[j-1][i-1]-x[j-1][i]), 817c4762a1bSJed Brown ux_N = 0.25*dhx*(x[j][i+1]+x[j+1][i+1]-x[j][i-1]-x[j+1][i-1]), 818c4762a1bSJed Brown ux_S = 0.25*dhx*(x[j-1][i+1]+x[j][i+1]-x[j-1][i-1]-x[j][i-1]); 819c4762a1bSJed Brown u = x[j][i]; 820c4762a1bSJed Brown for (k=0; k<its; k++) { 821c4762a1bSJed Brown const PetscScalar 822c4762a1bSJed Brown ux_E = dhx*(u_E-u), 823c4762a1bSJed Brown ux_W = dhx*(u-u_W), 824c4762a1bSJed Brown uy_N = dhy*(u_N-u), 825c4762a1bSJed Brown uy_S = dhy*(u-u_S), 826c4762a1bSJed Brown e_E = eta(user,xx,yy,ux_E,uy_E), 827c4762a1bSJed Brown e_W = eta(user,xx,yy,ux_W,uy_W), 828c4762a1bSJed Brown e_N = eta(user,xx,yy,ux_N,uy_N), 829c4762a1bSJed Brown e_S = eta(user,xx,yy,ux_S,uy_S), 830c4762a1bSJed Brown de_E = deta(user,xx,yy,ux_E,uy_E), 831c4762a1bSJed Brown de_W = deta(user,xx,yy,ux_W,uy_W), 832c4762a1bSJed Brown de_N = deta(user,xx,yy,ux_N,uy_N), 833c4762a1bSJed Brown de_S = deta(user,xx,yy,ux_S,uy_S), 834c4762a1bSJed Brown newt_E = e_E+de_E*PetscSqr(ux_E), 835c4762a1bSJed Brown newt_W = e_W+de_W*PetscSqr(ux_W), 836c4762a1bSJed Brown newt_N = e_N+de_N*PetscSqr(uy_N), 837c4762a1bSJed Brown newt_S = e_S+de_S*PetscSqr(uy_S), 838c4762a1bSJed Brown uxx = -hy * (e_E*ux_E - e_W*ux_W), 839c4762a1bSJed Brown uyy = -hx * (e_N*uy_N - e_S*uy_S); 840c4762a1bSJed Brown 841c4762a1bSJed Brown if (sc) eu = PetscExpScalar(u); 842c4762a1bSJed Brown else eu = 0; 843c4762a1bSJed Brown 844c4762a1bSJed Brown F = uxx + uyy - sc*eu - bij; 845c4762a1bSJed Brown if (k == 0) F0 = F; 846c4762a1bSJed Brown J = hxdhy*(newt_N + newt_S) + hydhx*(newt_E + newt_W) - sc*eu; 847c4762a1bSJed Brown y = F/J; 848c4762a1bSJed Brown u -= y; 849c4762a1bSJed Brown tot_its++; 850c4762a1bSJed Brown if (atol > PetscAbsReal(PetscRealPart(F)) || 851c4762a1bSJed Brown rtol*PetscAbsReal(PetscRealPart(F0)) > PetscAbsReal(PetscRealPart(F)) || 852c4762a1bSJed Brown stol*PetscAbsReal(PetscRealPart(u)) > PetscAbsReal(PetscRealPart(y))) { 853c4762a1bSJed Brown break; 854c4762a1bSJed Brown } 855c4762a1bSJed Brown } 856c4762a1bSJed Brown x[j][i] = u; 857c4762a1bSJed Brown } 858c4762a1bSJed Brown } 859c4762a1bSJed Brown } 860c4762a1bSJed Brown } 861c4762a1bSJed Brown /* 862c4762a1bSJed Brown x Restore vector 863c4762a1bSJed Brown */ 864c4762a1bSJed Brown } 865c4762a1bSJed Brown ierr = DMDAVecRestoreArray(da,localX,&x);CHKERRQ(ierr); 866c4762a1bSJed Brown ierr = DMLocalToGlobalBegin(da,localX,INSERT_VALUES,X);CHKERRQ(ierr); 867c4762a1bSJed Brown ierr = DMLocalToGlobalEnd(da,localX,INSERT_VALUES,X);CHKERRQ(ierr); 868c4762a1bSJed Brown ierr = PetscLogFlops(tot_its*(118.0));CHKERRQ(ierr); 869c4762a1bSJed Brown ierr = DMRestoreLocalVector(da,&localX);CHKERRQ(ierr); 870c4762a1bSJed Brown if (B) { 871c4762a1bSJed Brown ierr = DMDAVecRestoreArrayRead(da,localB,&b);CHKERRQ(ierr); 872c4762a1bSJed Brown ierr = DMRestoreLocalVector(da,&localB);CHKERRQ(ierr); 873c4762a1bSJed Brown } 874c4762a1bSJed Brown PetscFunctionReturn(0); 875c4762a1bSJed Brown } 876c4762a1bSJed Brown 877c4762a1bSJed Brown 878c4762a1bSJed Brown /*TEST 879c4762a1bSJed Brown 880c4762a1bSJed Brown test: 881c4762a1bSJed Brown nsize: 2 882c4762a1bSJed Brown args: -snes_monitor_short -da_grid_x 20 -da_grid_y 20 -p 1.3 -lambda 1 -jtype NEWTON 883c4762a1bSJed Brown requires: !single 884c4762a1bSJed Brown 885c4762a1bSJed Brown test: 886c4762a1bSJed Brown suffix: 2 887c4762a1bSJed Brown nsize: 2 888c4762a1bSJed Brown args: -snes_monitor_short -da_grid_x 20 -da_grid_y 20 -p 1.3 -lambda 1 -jtype PICARD -precheck 1 889c4762a1bSJed Brown requires: !single 890c4762a1bSJed Brown 891c4762a1bSJed Brown test: 892c4762a1bSJed Brown suffix: 3 893c4762a1bSJed Brown nsize: 2 89485b95db3SBarry Smith args: -snes_monitor_short -da_grid_x 20 -da_grid_y 20 -p 1.3 -lambda 1 -jtype PICARD -picard -precheck 1 -p 3 89585b95db3SBarry Smith requires: !single 89685b95db3SBarry Smith 89785b95db3SBarry Smith test: 89885b95db3SBarry Smith suffix: 3_star 89985b95db3SBarry Smith nsize: 2 90085b95db3SBarry Smith args: -snes_monitor_short -da_grid_x 20 -da_grid_y 20 -p 1.3 -lambda 1 -jtype PICARD -picard -precheck 1 -p 3 -alloc_star 90185b95db3SBarry Smith output_file: output/ex15_3.out 902c4762a1bSJed Brown requires: !single 903c4762a1bSJed Brown 904c4762a1bSJed Brown test: 905c4762a1bSJed Brown suffix: 4 906c4762a1bSJed Brown args: -snes_monitor_short -snes_type newtonls -npc_snes_type ngs -snes_npc_side left -da_grid_x 20 -da_grid_y 20 -p 1.3 -lambda 1 -ksp_monitor_short -pc_type none 907c4762a1bSJed Brown requires: !single 908c4762a1bSJed Brown 909c4762a1bSJed Brown test: 910c4762a1bSJed Brown suffix: lag_jac 911c4762a1bSJed Brown nsize: 4 912c4762a1bSJed Brown args: -snes_monitor_short -da_grid_x 20 -da_grid_y 20 -p 6.0 -lambda 0 -jtype NEWTON -snes_type ngmres -npc_snes_type newtonls -npc_snes_lag_jacobian 5 -npc_pc_type asm -npc_ksp_converged_reason -npc_snes_lag_jacobian_persists 913c4762a1bSJed Brown requires: !single 914c4762a1bSJed Brown 915c4762a1bSJed Brown test: 916c4762a1bSJed Brown suffix: lag_pc 917c4762a1bSJed Brown nsize: 4 918c4762a1bSJed Brown args: -snes_monitor_short -da_grid_x 20 -da_grid_y 20 -p 6.0 -lambda 0 -jtype NEWTON -snes_type ngmres -npc_snes_type newtonls -npc_snes_lag_preconditioner 5 -npc_pc_type asm -npc_ksp_converged_reason -npc_snes_lag_preconditioner_persists 919c4762a1bSJed Brown requires: !single 920c4762a1bSJed Brown 921c4762a1bSJed Brown test: 922c4762a1bSJed Brown suffix: nleqerr 923c4762a1bSJed Brown args: -snes_monitor_short -snes_type newtonls -da_grid_x 20 -da_grid_y 20 -p 1.3 -lambda 1 -snes_linesearch_monitor -pc_type lu -snes_linesearch_type nleqerr 924c4762a1bSJed Brown requires: !single 925c4762a1bSJed Brown 926bbc1464cSBarry Smith test: 927bbc1464cSBarry Smith suffix: mf 928bbc1464cSBarry Smith args: -snes_monitor_short -pc_type lu -da_refine 4 -p 3 -ksp_rtol 1.e-12 -snes_mf_operator 929bbc1464cSBarry Smith requires: !single 930bbc1464cSBarry Smith 931bbc1464cSBarry Smith test: 932bbc1464cSBarry Smith suffix: mf_picard 933bbc1464cSBarry Smith args: -snes_monitor_short -pc_type lu -da_refine 4 -p 3 -ksp_rtol 1.e-12 -snes_mf_operator -picard 934bbc1464cSBarry Smith requires: !single 935bbc1464cSBarry Smith output_file: output/ex15_mf.out 936bbc1464cSBarry Smith 93785b95db3SBarry Smith test: 93885b95db3SBarry Smith suffix: fd_picard 93985b95db3SBarry Smith args: -snes_monitor_short -pc_type lu -da_refine 2 -p 3 -ksp_rtol 1.e-12 -snes_fd -picard 94085b95db3SBarry Smith requires: !single 94185b95db3SBarry Smith 94285b95db3SBarry Smith test: 94385b95db3SBarry Smith suffix: fd_color_picard 94485b95db3SBarry Smith args: -snes_monitor_short -pc_type lu -da_refine 4 -p 3 -ksp_rtol 1.e-12 -snes_fd_color -picard 94585b95db3SBarry Smith requires: !single 94685b95db3SBarry Smith output_file: output/ex15_mf.out 94785b95db3SBarry Smith 948c4762a1bSJed Brown TEST*/ 949