xref: /petsc/src/snes/tutorials/ex5.c (revision 4e1ad211d90c55cb3e845ec9c62ed7c4fbc6ef91)
1c4762a1bSJed Brown static char help[] = "Bratu nonlinear PDE in 2d.\n\
2c4762a1bSJed Brown We solve the  Bratu (SFI - solid fuel ignition) problem in a 2D rectangular\n\
3c4762a1bSJed Brown domain, using distributed arrays (DMDAs) to partition the parallel grid.\n\
4c4762a1bSJed Brown The command line options include:\n\
5c4762a1bSJed Brown   -par <parameter>, where <parameter> indicates the problem's nonlinearity\n\
6c4762a1bSJed Brown      problem SFI:  <parameter> = Bratu parameter (0 <= par <= 6.81)\n\n\
7c4762a1bSJed Brown   -m_par/n_par <parameter>, where <parameter> indicates an integer\n \
8c4762a1bSJed Brown       that MMS3 will be evaluated with 2^m_par, 2^n_par";
9c4762a1bSJed Brown 
10c4762a1bSJed Brown /*T
11c4762a1bSJed Brown    Concepts: SNES^parallel Bratu example
12c4762a1bSJed Brown    Concepts: DMDA^using distributed arrays;
13c4762a1bSJed Brown    Concepts: IS coloirng types;
14c4762a1bSJed Brown    Processors: n
15c4762a1bSJed Brown T*/
16c4762a1bSJed Brown 
17c4762a1bSJed Brown 
18c4762a1bSJed Brown 
19c4762a1bSJed Brown /* ------------------------------------------------------------------------
20c4762a1bSJed Brown 
21c4762a1bSJed Brown     Solid Fuel Ignition (SFI) problem.  This problem is modeled by
22c4762a1bSJed Brown     the partial differential equation
23c4762a1bSJed Brown 
24c4762a1bSJed Brown             -Laplacian u - lambda*exp(u) = 0,  0 < x,y < 1,
25c4762a1bSJed Brown 
26c4762a1bSJed Brown     with boundary conditions
27c4762a1bSJed Brown 
28c4762a1bSJed Brown              u = 0  for  x = 0, x = 1, y = 0, y = 1.
29c4762a1bSJed Brown 
30c4762a1bSJed Brown     A finite difference approximation with the usual 5-point stencil
31c4762a1bSJed Brown     is used to discretize the boundary value problem to obtain a nonlinear
32c4762a1bSJed Brown     system of equations.
33c4762a1bSJed Brown 
34c4762a1bSJed Brown 
35c4762a1bSJed Brown       This example shows how geometric multigrid can be run transparently with a nonlinear solver so long
36c4762a1bSJed Brown       as SNESSetDM() is provided. Example usage
37c4762a1bSJed Brown 
38c4762a1bSJed Brown       ./ex5 -pc_type mg -ksp_monitor  -snes_view -pc_mg_levels 3 -pc_mg_galerkin pmat -da_grid_x 17 -da_grid_y 17
39c4762a1bSJed Brown              -mg_levels_ksp_monitor -snes_monitor -mg_levels_pc_type sor -pc_mg_type full
40c4762a1bSJed Brown 
41c4762a1bSJed Brown       or to run with grid sequencing on the nonlinear problem (note that you do not need to provide the number of
42c4762a1bSJed Brown          multigrid levels, it will be determined automatically based on the number of refinements done)
43c4762a1bSJed Brown 
44c4762a1bSJed Brown       ./ex5 -pc_type mg -ksp_monitor  -snes_view -pc_mg_galerkin pmat -snes_grid_sequence 3
45c4762a1bSJed Brown              -mg_levels_ksp_monitor -snes_monitor -mg_levels_pc_type sor -pc_mg_type full
46c4762a1bSJed Brown 
47c4762a1bSJed Brown   ------------------------------------------------------------------------- */
48c4762a1bSJed Brown 
49c4762a1bSJed Brown /*
50c4762a1bSJed Brown    Include "petscdmda.h" so that we can use distributed arrays (DMDAs).
51c4762a1bSJed Brown    Include "petscsnes.h" so that we can use SNES solvers.  Note that this
52c4762a1bSJed Brown */
53c4762a1bSJed Brown #include <petscdm.h>
54c4762a1bSJed Brown #include <petscdmda.h>
55c4762a1bSJed Brown #include <petscsnes.h>
56c4762a1bSJed Brown #include <petscmatlab.h>
57c4762a1bSJed Brown #include <petsc/private/snesimpl.h> /* For SNES_Solve event */
58c4762a1bSJed Brown 
59c4762a1bSJed Brown /*
60c4762a1bSJed Brown    User-defined application context - contains data needed by the
61c4762a1bSJed Brown    application-provided call-back routines, FormJacobianLocal() and
62c4762a1bSJed Brown    FormFunctionLocal().
63c4762a1bSJed Brown */
64c4762a1bSJed Brown typedef struct AppCtx AppCtx;
65c4762a1bSJed Brown struct AppCtx {
66c4762a1bSJed Brown   PetscReal param;          /* test problem parameter */
67c4762a1bSJed Brown   PetscInt  m,n;            /* MMS3 parameters */
68c4762a1bSJed Brown   PetscErrorCode (*mms_solution)(AppCtx*,const DMDACoor2d*,PetscScalar*);
69c4762a1bSJed Brown   PetscErrorCode (*mms_forcing)(AppCtx*,const DMDACoor2d*,PetscScalar*);
70c4762a1bSJed Brown };
71c4762a1bSJed Brown 
72c4762a1bSJed Brown /*
73c4762a1bSJed Brown    User-defined routines
74c4762a1bSJed Brown */
75c4762a1bSJed Brown extern PetscErrorCode FormInitialGuess(DM,AppCtx*,Vec);
76c4762a1bSJed Brown extern PetscErrorCode FormFunctionLocal(DMDALocalInfo*,PetscScalar**,PetscScalar**,AppCtx*);
77c4762a1bSJed Brown extern PetscErrorCode FormExactSolution(DM,AppCtx*,Vec);
78c4762a1bSJed Brown extern PetscErrorCode ZeroBCSolution(AppCtx*,const DMDACoor2d*,PetscScalar*);
79c4762a1bSJed Brown extern PetscErrorCode MMSSolution1(AppCtx*,const DMDACoor2d*,PetscScalar*);
80c4762a1bSJed Brown extern PetscErrorCode MMSForcing1(AppCtx*,const DMDACoor2d*,PetscScalar*);
81c4762a1bSJed Brown extern PetscErrorCode MMSSolution2(AppCtx*,const DMDACoor2d*,PetscScalar*);
82c4762a1bSJed Brown extern PetscErrorCode MMSForcing2(AppCtx*,const DMDACoor2d*,PetscScalar*);
83c4762a1bSJed Brown extern PetscErrorCode MMSSolution3(AppCtx*,const DMDACoor2d*,PetscScalar*);
84c4762a1bSJed Brown extern PetscErrorCode MMSForcing3(AppCtx*,const DMDACoor2d*,PetscScalar*);
85c4762a1bSJed Brown extern PetscErrorCode MMSSolution4(AppCtx*,const DMDACoor2d*,PetscScalar*);
86c4762a1bSJed Brown extern PetscErrorCode MMSForcing4(AppCtx*,const DMDACoor2d*,PetscScalar*);
87c4762a1bSJed Brown extern PetscErrorCode FormJacobianLocal(DMDALocalInfo*,PetscScalar**,Mat,Mat,AppCtx*);
88c4762a1bSJed Brown extern PetscErrorCode FormObjectiveLocal(DMDALocalInfo*,PetscScalar**,PetscReal*,AppCtx*);
89c4762a1bSJed Brown extern PetscErrorCode FormFunctionMatlab(SNES,Vec,Vec,void*);
90c4762a1bSJed Brown extern PetscErrorCode NonlinearGS(SNES,Vec,Vec,void*);
91c4762a1bSJed Brown 
92c4762a1bSJed Brown int main(int argc,char **argv)
93c4762a1bSJed Brown {
94c4762a1bSJed Brown   SNES           snes;                         /* nonlinear solver */
95c4762a1bSJed Brown   Vec            x;                            /* solution vector */
96c4762a1bSJed Brown   AppCtx         user;                         /* user-defined work context */
97c4762a1bSJed Brown   PetscInt       its;                          /* iterations for convergence */
98c4762a1bSJed Brown   PetscErrorCode ierr;
99c4762a1bSJed Brown   PetscReal      bratu_lambda_max = 6.81;
100c4762a1bSJed Brown   PetscReal      bratu_lambda_min = 0.;
101c4762a1bSJed Brown   PetscInt       MMS              = 0;
102c4762a1bSJed Brown   PetscBool      flg              = PETSC_FALSE;
103c4762a1bSJed Brown   DM             da;
104c4762a1bSJed Brown   Vec            r               = NULL;
105c4762a1bSJed Brown   KSP            ksp;
106c4762a1bSJed Brown   PetscInt       lits,slits;
107c4762a1bSJed Brown 
108c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
109c4762a1bSJed Brown      Initialize program
110c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
111c4762a1bSJed Brown 
112c4762a1bSJed Brown   ierr = PetscInitialize(&argc,&argv,(char*)0,help);if (ierr) return ierr;
113c4762a1bSJed Brown 
114c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
115c4762a1bSJed Brown      Initialize problem parameters
116c4762a1bSJed Brown   - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
117c4762a1bSJed Brown   user.param = 6.0;
118c4762a1bSJed Brown   ierr       = PetscOptionsGetReal(NULL,NULL,"-par",&user.param,NULL);CHKERRQ(ierr);
119c4762a1bSJed Brown   if (user.param > bratu_lambda_max || user.param < bratu_lambda_min) SETERRQ3(PETSC_COMM_SELF,1,"Lambda, %g, is out of range, [%g, %g]", user.param, bratu_lambda_min, bratu_lambda_max);
120c4762a1bSJed Brown   ierr       = PetscOptionsGetInt(NULL,NULL,"-mms",&MMS,NULL);CHKERRQ(ierr);
121c4762a1bSJed Brown   if (MMS == 3) {
122c4762a1bSJed Brown     PetscInt mPar = 2, nPar = 1;
123c4762a1bSJed Brown     ierr = PetscOptionsGetInt(NULL,NULL,"-m_par",&mPar,NULL);CHKERRQ(ierr);
124c4762a1bSJed Brown     ierr = PetscOptionsGetInt(NULL,NULL,"-n_par",&nPar,NULL);CHKERRQ(ierr);
125c4762a1bSJed Brown     user.m = PetscPowInt(2,mPar);
126c4762a1bSJed Brown     user.n = PetscPowInt(2,nPar);
127c4762a1bSJed Brown   }
128c4762a1bSJed Brown 
129c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
130c4762a1bSJed Brown      Create nonlinear solver context
131c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
132c4762a1bSJed Brown   ierr = SNESCreate(PETSC_COMM_WORLD,&snes);CHKERRQ(ierr);
133c4762a1bSJed Brown   ierr = SNESSetCountersReset(snes,PETSC_FALSE);CHKERRQ(ierr);
134c4762a1bSJed Brown   ierr = SNESSetNGS(snes, NonlinearGS, NULL);CHKERRQ(ierr);
135c4762a1bSJed Brown 
136c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
137c4762a1bSJed Brown      Create distributed array (DMDA) to manage parallel grid and vectors
138c4762a1bSJed Brown   - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
139c4762a1bSJed Brown   ierr = DMDACreate2d(PETSC_COMM_WORLD, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE,DMDA_STENCIL_STAR,4,4,PETSC_DECIDE,PETSC_DECIDE,1,1,NULL,NULL,&da);CHKERRQ(ierr);
140c4762a1bSJed Brown   ierr = DMSetFromOptions(da);CHKERRQ(ierr);
141c4762a1bSJed Brown   ierr = DMSetUp(da);CHKERRQ(ierr);
142c4762a1bSJed Brown   ierr = DMDASetUniformCoordinates(da, 0.0, 1.0, 0.0, 1.0, 0.0, 1.0);CHKERRQ(ierr);
143c4762a1bSJed Brown   ierr = DMSetApplicationContext(da,&user);CHKERRQ(ierr);
144c4762a1bSJed Brown   ierr = SNESSetDM(snes,da);CHKERRQ(ierr);
145c4762a1bSJed Brown   /*  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
146c4762a1bSJed Brown      Extract global vectors from DMDA; then duplicate for remaining
147c4762a1bSJed Brown      vectors that are the same types
148c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
149c4762a1bSJed Brown   ierr = DMCreateGlobalVector(da,&x);CHKERRQ(ierr);
150c4762a1bSJed Brown 
151c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
152c4762a1bSJed Brown      Set local function evaluation routine
153c4762a1bSJed Brown   - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
154c4762a1bSJed Brown   user.mms_solution = ZeroBCSolution;
155c4762a1bSJed Brown   switch (MMS) {
156c4762a1bSJed Brown   case 0: user.mms_solution = NULL; user.mms_forcing = NULL; CHKERRQ(ierr);
157c4762a1bSJed Brown   case 1: user.mms_solution = MMSSolution1; user.mms_forcing = MMSForcing1; break;
158c4762a1bSJed Brown   case 2: user.mms_solution = MMSSolution2; user.mms_forcing = MMSForcing2; break;
159c4762a1bSJed Brown   case 3: user.mms_solution = MMSSolution3; user.mms_forcing = MMSForcing3; break;
160c4762a1bSJed Brown   case 4: user.mms_solution = MMSSolution4; user.mms_forcing = MMSForcing4; break;
161c4762a1bSJed Brown   default: SETERRQ1(PETSC_COMM_WORLD,PETSC_ERR_USER,"Unknown MMS type %d",MMS);
162c4762a1bSJed Brown   }
163c4762a1bSJed Brown   ierr = DMDASNESSetFunctionLocal(da,INSERT_VALUES,(DMDASNESFunction)FormFunctionLocal,&user);CHKERRQ(ierr);
164c4762a1bSJed Brown   ierr = PetscOptionsGetBool(NULL,NULL,"-fd",&flg,NULL);CHKERRQ(ierr);
165c4762a1bSJed Brown   if (!flg) {
166c4762a1bSJed Brown     ierr = DMDASNESSetJacobianLocal(da,(DMDASNESJacobian)FormJacobianLocal,&user);CHKERRQ(ierr);
167c4762a1bSJed Brown   }
168c4762a1bSJed Brown 
169c4762a1bSJed Brown   ierr = PetscOptionsGetBool(NULL,NULL,"-obj",&flg,NULL);CHKERRQ(ierr);
170c4762a1bSJed Brown   if (flg) {
171c4762a1bSJed Brown     ierr = DMDASNESSetObjectiveLocal(da,(DMDASNESObjective)FormObjectiveLocal,&user);CHKERRQ(ierr);
172c4762a1bSJed Brown   }
173c4762a1bSJed Brown 
174*4e1ad211SJed Brown   if (PetscDefined(HAVE_MATLAB_ENGINE)) {
175*4e1ad211SJed Brown     PetscBool matlab_function = PETSC_FALSE;
176c4762a1bSJed Brown     ierr = PetscOptionsGetBool(NULL,NULL,"-matlab_function",&matlab_function,0);CHKERRQ(ierr);
177c4762a1bSJed Brown     if (matlab_function) {
178c4762a1bSJed Brown       ierr = VecDuplicate(x,&r);CHKERRQ(ierr);
179c4762a1bSJed Brown       ierr = SNESSetFunction(snes,r,FormFunctionMatlab,&user);CHKERRQ(ierr);
180c4762a1bSJed Brown     }
181*4e1ad211SJed Brown   }
182c4762a1bSJed Brown 
183c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
184c4762a1bSJed Brown      Customize nonlinear solver; set runtime options
185c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
186c4762a1bSJed Brown   ierr = SNESSetFromOptions(snes);CHKERRQ(ierr);
187c4762a1bSJed Brown 
188c4762a1bSJed Brown   ierr = FormInitialGuess(da,&user,x);CHKERRQ(ierr);
189c4762a1bSJed Brown 
190c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
191c4762a1bSJed Brown      Solve nonlinear system
192c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
193c4762a1bSJed Brown   ierr = SNESSolve(snes,NULL,x);CHKERRQ(ierr);
194c4762a1bSJed Brown   ierr = SNESGetIterationNumber(snes,&its);CHKERRQ(ierr);
195c4762a1bSJed Brown 
196c4762a1bSJed Brown   ierr = SNESGetLinearSolveIterations(snes,&slits);CHKERRQ(ierr);
197c4762a1bSJed Brown   ierr = SNESGetKSP(snes,&ksp);CHKERRQ(ierr);
198c4762a1bSJed Brown   ierr = KSPGetTotalIterations(ksp,&lits);CHKERRQ(ierr);
199c4762a1bSJed Brown   if (lits != slits) SETERRQ2(PETSC_COMM_WORLD,PETSC_ERR_PLIB,"Number of total linear iterations reported by SNES %D does not match reported by KSP %D",slits,lits);
200c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
201c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
202c4762a1bSJed Brown 
203c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
204c4762a1bSJed Brown      If using MMS, check the l_2 error
205c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
206c4762a1bSJed Brown   if (MMS) {
207c4762a1bSJed Brown     Vec       e;
208c4762a1bSJed Brown     PetscReal errorl2, errorinf;
209c4762a1bSJed Brown     PetscInt  N;
210c4762a1bSJed Brown 
211c4762a1bSJed Brown     ierr = VecDuplicate(x, &e);CHKERRQ(ierr);
212c4762a1bSJed Brown     ierr = PetscObjectViewFromOptions((PetscObject) x, NULL, "-sol_view");CHKERRQ(ierr);
213c4762a1bSJed Brown     ierr = FormExactSolution(da, &user, e);CHKERRQ(ierr);
214c4762a1bSJed Brown     ierr = PetscObjectViewFromOptions((PetscObject) e, NULL, "-exact_view");CHKERRQ(ierr);
215c4762a1bSJed Brown     ierr = VecAXPY(e, -1.0, x);CHKERRQ(ierr);
216c4762a1bSJed Brown     ierr = PetscObjectViewFromOptions((PetscObject) e, NULL, "-error_view");CHKERRQ(ierr);
217c4762a1bSJed Brown     ierr = VecNorm(e, NORM_2, &errorl2);CHKERRQ(ierr);
218c4762a1bSJed Brown     ierr = VecNorm(e, NORM_INFINITY, &errorinf);CHKERRQ(ierr);
219c4762a1bSJed Brown     ierr = VecGetSize(e, &N);CHKERRQ(ierr);
220c4762a1bSJed Brown     ierr = PetscPrintf(PETSC_COMM_WORLD, "N: %D error L2 %g inf %g\n", N, (double) errorl2/PetscSqrtReal(N), (double) errorinf);CHKERRQ(ierr);
221c4762a1bSJed Brown     ierr = VecDestroy(&e);CHKERRQ(ierr);
222c4762a1bSJed Brown     ierr = PetscLogEventSetDof(SNES_Solve, 0, N);CHKERRQ(ierr);
223c4762a1bSJed Brown     ierr = PetscLogEventSetError(SNES_Solve, 0, errorl2/PetscSqrtReal(N));CHKERRQ(ierr);
224c4762a1bSJed Brown   }
225c4762a1bSJed Brown 
226c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
227c4762a1bSJed Brown      Free work space.  All PETSc objects should be destroyed when they
228c4762a1bSJed Brown      are no longer needed.
229c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
230c4762a1bSJed Brown   ierr = VecDestroy(&r);CHKERRQ(ierr);
231c4762a1bSJed Brown   ierr = VecDestroy(&x);CHKERRQ(ierr);
232c4762a1bSJed Brown   ierr = SNESDestroy(&snes);CHKERRQ(ierr);
233c4762a1bSJed Brown   ierr = DMDestroy(&da);CHKERRQ(ierr);
234c4762a1bSJed Brown   ierr = PetscFinalize();
235c4762a1bSJed Brown   return ierr;
236c4762a1bSJed Brown }
237c4762a1bSJed Brown /* ------------------------------------------------------------------- */
238c4762a1bSJed Brown /*
239c4762a1bSJed Brown    FormInitialGuess - Forms initial approximation.
240c4762a1bSJed Brown 
241c4762a1bSJed Brown    Input Parameters:
242c4762a1bSJed Brown    da - The DM
243c4762a1bSJed Brown    user - user-defined application context
244c4762a1bSJed Brown 
245c4762a1bSJed Brown    Output Parameter:
246c4762a1bSJed Brown    X - vector
247c4762a1bSJed Brown  */
248c4762a1bSJed Brown PetscErrorCode FormInitialGuess(DM da,AppCtx *user,Vec X)
249c4762a1bSJed Brown {
250c4762a1bSJed Brown   PetscInt       i,j,Mx,My,xs,ys,xm,ym;
251c4762a1bSJed Brown   PetscErrorCode ierr;
252c4762a1bSJed Brown   PetscReal      lambda,temp1,temp,hx,hy;
253c4762a1bSJed Brown   PetscScalar    **x;
254c4762a1bSJed Brown 
255c4762a1bSJed Brown   PetscFunctionBeginUser;
256c4762a1bSJed Brown   ierr = DMDAGetInfo(da,PETSC_IGNORE,&Mx,&My,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE);CHKERRQ(ierr);
257c4762a1bSJed Brown 
258c4762a1bSJed Brown   lambda = user->param;
259c4762a1bSJed Brown   hx     = 1.0/(PetscReal)(Mx-1);
260c4762a1bSJed Brown   hy     = 1.0/(PetscReal)(My-1);
261c4762a1bSJed Brown   temp1  = lambda/(lambda + 1.0);
262c4762a1bSJed Brown 
263c4762a1bSJed Brown   /*
264c4762a1bSJed Brown      Get a pointer to vector data.
265c4762a1bSJed Brown        - For default PETSc vectors, VecGetArray() returns a pointer to
266c4762a1bSJed Brown          the data array.  Otherwise, the routine is implementation dependent.
267c4762a1bSJed Brown        - You MUST call VecRestoreArray() when you no longer need access to
268c4762a1bSJed Brown          the array.
269c4762a1bSJed Brown   */
270c4762a1bSJed Brown   ierr = DMDAVecGetArray(da,X,&x);CHKERRQ(ierr);
271c4762a1bSJed Brown 
272c4762a1bSJed Brown   /*
273c4762a1bSJed Brown      Get local grid boundaries (for 2-dimensional DMDA):
274c4762a1bSJed Brown        xs, ys   - starting grid indices (no ghost points)
275c4762a1bSJed Brown        xm, ym   - widths of local grid (no ghost points)
276c4762a1bSJed Brown 
277c4762a1bSJed Brown   */
278c4762a1bSJed Brown   ierr = DMDAGetCorners(da,&xs,&ys,NULL,&xm,&ym,NULL);CHKERRQ(ierr);
279c4762a1bSJed Brown 
280c4762a1bSJed Brown   /*
281c4762a1bSJed Brown      Compute initial guess over the locally owned part of the grid
282c4762a1bSJed Brown   */
283c4762a1bSJed Brown   for (j=ys; j<ys+ym; j++) {
284c4762a1bSJed Brown     temp = (PetscReal)(PetscMin(j,My-j-1))*hy;
285c4762a1bSJed Brown     for (i=xs; i<xs+xm; i++) {
286c4762a1bSJed Brown       if (i == 0 || j == 0 || i == Mx-1 || j == My-1) {
287c4762a1bSJed Brown         /* boundary conditions are all zero Dirichlet */
288c4762a1bSJed Brown         x[j][i] = 0.0;
289c4762a1bSJed Brown       } else {
290c4762a1bSJed Brown         x[j][i] = temp1*PetscSqrtReal(PetscMin((PetscReal)(PetscMin(i,Mx-i-1))*hx,temp));
291c4762a1bSJed Brown       }
292c4762a1bSJed Brown     }
293c4762a1bSJed Brown   }
294c4762a1bSJed Brown 
295c4762a1bSJed Brown   /*
296c4762a1bSJed Brown      Restore vector
297c4762a1bSJed Brown   */
298c4762a1bSJed Brown   ierr = DMDAVecRestoreArray(da,X,&x);CHKERRQ(ierr);
299c4762a1bSJed Brown   PetscFunctionReturn(0);
300c4762a1bSJed Brown }
301c4762a1bSJed Brown 
302c4762a1bSJed Brown /*
303c4762a1bSJed Brown   FormExactSolution - Forms MMS solution
304c4762a1bSJed Brown 
305c4762a1bSJed Brown   Input Parameters:
306c4762a1bSJed Brown   da - The DM
307c4762a1bSJed Brown   user - user-defined application context
308c4762a1bSJed Brown 
309c4762a1bSJed Brown   Output Parameter:
310c4762a1bSJed Brown   X - vector
311c4762a1bSJed Brown  */
312c4762a1bSJed Brown PetscErrorCode FormExactSolution(DM da, AppCtx *user, Vec U)
313c4762a1bSJed Brown {
314c4762a1bSJed Brown   DM             coordDA;
315c4762a1bSJed Brown   Vec            coordinates;
316c4762a1bSJed Brown   DMDACoor2d   **coords;
317c4762a1bSJed Brown   PetscScalar  **u;
318c4762a1bSJed Brown   PetscInt       xs, ys, xm, ym, i, j;
319c4762a1bSJed Brown   PetscErrorCode ierr;
320c4762a1bSJed Brown 
321c4762a1bSJed Brown   PetscFunctionBeginUser;
322c4762a1bSJed Brown   ierr = DMDAGetCorners(da, &xs, &ys, NULL, &xm, &ym, NULL);CHKERRQ(ierr);
323c4762a1bSJed Brown   ierr = DMGetCoordinateDM(da, &coordDA);CHKERRQ(ierr);
324c4762a1bSJed Brown   ierr = DMGetCoordinates(da, &coordinates);CHKERRQ(ierr);
325c4762a1bSJed Brown   ierr = DMDAVecGetArray(coordDA, coordinates, &coords);CHKERRQ(ierr);
326c4762a1bSJed Brown   ierr = DMDAVecGetArray(da, U, &u);CHKERRQ(ierr);
327c4762a1bSJed Brown   for (j = ys; j < ys+ym; ++j) {
328c4762a1bSJed Brown     for (i = xs; i < xs+xm; ++i) {
329c4762a1bSJed Brown       user->mms_solution(user,&coords[j][i],&u[j][i]);
330c4762a1bSJed Brown     }
331c4762a1bSJed Brown   }
332c4762a1bSJed Brown   ierr = DMDAVecRestoreArray(da, U, &u);CHKERRQ(ierr);
333c4762a1bSJed Brown   ierr = DMDAVecRestoreArray(coordDA, coordinates, &coords);CHKERRQ(ierr);
334c4762a1bSJed Brown   PetscFunctionReturn(0);
335c4762a1bSJed Brown }
336c4762a1bSJed Brown 
337c4762a1bSJed Brown PetscErrorCode ZeroBCSolution(AppCtx *user,const DMDACoor2d *c,PetscScalar *u)
338c4762a1bSJed Brown {
339c4762a1bSJed Brown   u[0] = 0.;
340c4762a1bSJed Brown   return 0;
341c4762a1bSJed Brown }
342c4762a1bSJed Brown 
343c4762a1bSJed Brown /* The functions below evaluate the MMS solution u(x,y) and associated forcing
344c4762a1bSJed Brown 
345c4762a1bSJed Brown      f(x,y) = -u_xx - u_yy - lambda exp(u)
346c4762a1bSJed Brown 
347c4762a1bSJed Brown   such that u(x,y) is an exact solution with f(x,y) as the right hand side forcing term.
348c4762a1bSJed Brown  */
349c4762a1bSJed Brown PetscErrorCode MMSSolution1(AppCtx *user,const DMDACoor2d *c,PetscScalar *u)
350c4762a1bSJed Brown {
351c4762a1bSJed Brown   PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y);
352c4762a1bSJed Brown   u[0] = x*(1 - x)*y*(1 - y);
353c4762a1bSJed Brown   PetscLogFlops(5);
354c4762a1bSJed Brown   return 0;
355c4762a1bSJed Brown }
356c4762a1bSJed Brown PetscErrorCode MMSForcing1(AppCtx *user,const DMDACoor2d *c,PetscScalar *f)
357c4762a1bSJed Brown {
358c4762a1bSJed Brown   PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y);
359c4762a1bSJed Brown   f[0] = 2*x*(1 - x) + 2*y*(1 - y) - user->param*PetscExpReal(x*(1 - x)*y*(1 - y));
360c4762a1bSJed Brown   return 0;
361c4762a1bSJed Brown }
362c4762a1bSJed Brown 
363c4762a1bSJed Brown PetscErrorCode MMSSolution2(AppCtx *user,const DMDACoor2d *c,PetscScalar *u)
364c4762a1bSJed Brown {
365c4762a1bSJed Brown   PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y);
366c4762a1bSJed Brown   u[0] = PetscSinReal(PETSC_PI*x)*PetscSinReal(PETSC_PI*y);
367c4762a1bSJed Brown   PetscLogFlops(5);
368c4762a1bSJed Brown   return 0;
369c4762a1bSJed Brown }
370c4762a1bSJed Brown PetscErrorCode MMSForcing2(AppCtx *user,const DMDACoor2d *c,PetscScalar *f)
371c4762a1bSJed Brown {
372c4762a1bSJed Brown   PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y);
373c4762a1bSJed Brown   f[0] = 2*PetscSqr(PETSC_PI)*PetscSinReal(PETSC_PI*x)*PetscSinReal(PETSC_PI*y) - user->param*PetscExpReal(PetscSinReal(PETSC_PI*x)*PetscSinReal(PETSC_PI*y));
374c4762a1bSJed Brown   return 0;
375c4762a1bSJed Brown }
376c4762a1bSJed Brown 
377c4762a1bSJed Brown PetscErrorCode MMSSolution3(AppCtx *user,const DMDACoor2d *c,PetscScalar *u)
378c4762a1bSJed Brown {
379c4762a1bSJed Brown   PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y);
380c4762a1bSJed Brown   u[0] = PetscSinReal(user->m*PETSC_PI*x*(1-y))*PetscSinReal(user->n*PETSC_PI*y*(1-x));
381c4762a1bSJed Brown   PetscLogFlops(5);
382c4762a1bSJed Brown   return 0;
383c4762a1bSJed Brown }
384c4762a1bSJed Brown PetscErrorCode MMSForcing3(AppCtx *user,const DMDACoor2d *c,PetscScalar *f)
385c4762a1bSJed Brown {
386c4762a1bSJed Brown   PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y);
387c4762a1bSJed Brown   PetscReal m = user->m, n = user->n, lambda = user->param;
388c4762a1bSJed Brown   f[0] = (-(PetscExpReal(PetscSinReal(m*PETSC_PI*x*(1 - y))*PetscSinReal(n*PETSC_PI*(1 - x)*y))*lambda)
389c4762a1bSJed Brown           + PetscSqr(PETSC_PI)*(-2*m*n*((-1 + x)*x + (-1 + y)*y)*PetscCosReal(m*PETSC_PI*x*(-1 + y))*PetscCosReal(n*PETSC_PI*(-1 + x)*y)
390c4762a1bSJed Brown                                 + (PetscSqr(m)*(PetscSqr(x) + PetscSqr(-1 + y)) + PetscSqr(n)*(PetscSqr(-1 + x) + PetscSqr(y)))
391c4762a1bSJed Brown                                 *PetscSinReal(m*PETSC_PI*x*(-1 + y))*PetscSinReal(n*PETSC_PI*(-1 + x)*y)));
392c4762a1bSJed Brown   return 0;
393c4762a1bSJed Brown }
394c4762a1bSJed Brown 
395c4762a1bSJed Brown PetscErrorCode MMSSolution4(AppCtx *user,const DMDACoor2d *c,PetscScalar *u)
396c4762a1bSJed Brown {
397c4762a1bSJed Brown   const PetscReal Lx = 1.,Ly = 1.;
398c4762a1bSJed Brown   PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y);
399c4762a1bSJed Brown   u[0] = (PetscPowReal(x,4)-PetscSqr(Lx)*PetscSqr(x))*(PetscPowReal(y,4)-PetscSqr(Ly)*PetscSqr(y));
400c4762a1bSJed Brown   PetscLogFlops(9);
401c4762a1bSJed Brown   return 0;
402c4762a1bSJed Brown }
403c4762a1bSJed Brown PetscErrorCode MMSForcing4(AppCtx *user,const DMDACoor2d *c,PetscScalar *f)
404c4762a1bSJed Brown {
405c4762a1bSJed Brown   const PetscReal Lx = 1.,Ly = 1.;
406c4762a1bSJed Brown   PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y);
407c4762a1bSJed Brown   f[0] = (2*PetscSqr(x)*(PetscSqr(x)-PetscSqr(Lx))*(PetscSqr(Ly)-6*PetscSqr(y))
408c4762a1bSJed Brown           + 2*PetscSqr(y)*(PetscSqr(Lx)-6*PetscSqr(x))*(PetscSqr(y)-PetscSqr(Ly))
409c4762a1bSJed Brown           - user->param*PetscExpReal((PetscPowReal(x,4)-PetscSqr(Lx)*PetscSqr(x))*(PetscPowReal(y,4)-PetscSqr(Ly)*PetscSqr(y))));
410c4762a1bSJed Brown   return 0;
411c4762a1bSJed Brown }
412c4762a1bSJed Brown 
413c4762a1bSJed Brown /* ------------------------------------------------------------------- */
414c4762a1bSJed Brown /*
415c4762a1bSJed Brown    FormFunctionLocal - Evaluates nonlinear function, F(x) on local process patch
416c4762a1bSJed Brown 
417c4762a1bSJed Brown 
418c4762a1bSJed Brown  */
419c4762a1bSJed Brown PetscErrorCode FormFunctionLocal(DMDALocalInfo *info,PetscScalar **x,PetscScalar **f,AppCtx *user)
420c4762a1bSJed Brown {
421c4762a1bSJed Brown   PetscErrorCode ierr;
422c4762a1bSJed Brown   PetscInt       i,j;
423c4762a1bSJed Brown   PetscReal      lambda,hx,hy,hxdhy,hydhx;
424c4762a1bSJed Brown   PetscScalar    u,ue,uw,un,us,uxx,uyy,mms_solution,mms_forcing;
425c4762a1bSJed Brown   DMDACoor2d     c;
426c4762a1bSJed Brown 
427c4762a1bSJed Brown   PetscFunctionBeginUser;
428c4762a1bSJed Brown   lambda = user->param;
429c4762a1bSJed Brown   hx     = 1.0/(PetscReal)(info->mx-1);
430c4762a1bSJed Brown   hy     = 1.0/(PetscReal)(info->my-1);
431c4762a1bSJed Brown   hxdhy  = hx/hy;
432c4762a1bSJed Brown   hydhx  = hy/hx;
433c4762a1bSJed Brown   /*
434c4762a1bSJed Brown      Compute function over the locally owned part of the grid
435c4762a1bSJed Brown   */
436c4762a1bSJed Brown   for (j=info->ys; j<info->ys+info->ym; j++) {
437c4762a1bSJed Brown     for (i=info->xs; i<info->xs+info->xm; i++) {
438c4762a1bSJed Brown       if (i == 0 || j == 0 || i == info->mx-1 || j == info->my-1) {
439c4762a1bSJed Brown         c.x = i*hx; c.y = j*hy;
440c4762a1bSJed Brown         ierr = user->mms_solution(user,&c,&mms_solution);CHKERRQ(ierr);
441c4762a1bSJed Brown         f[j][i] = 2.0*(hydhx+hxdhy)*(x[j][i] - mms_solution);
442c4762a1bSJed Brown       } else {
443c4762a1bSJed Brown         u  = x[j][i];
444c4762a1bSJed Brown         uw = x[j][i-1];
445c4762a1bSJed Brown         ue = x[j][i+1];
446c4762a1bSJed Brown         un = x[j-1][i];
447c4762a1bSJed Brown         us = x[j+1][i];
448c4762a1bSJed Brown 
449c4762a1bSJed Brown         /* Enforce boundary conditions at neighboring points -- setting these values causes the Jacobian to be symmetric. */
450c4762a1bSJed Brown         if (i-1 == 0) {c.x = (i-1)*hx; c.y = j*hy; ierr = user->mms_solution(user,&c,&uw);CHKERRQ(ierr);}
451c4762a1bSJed Brown         if (i+1 == info->mx-1) {c.x = (i+1)*hx; c.y = j*hy; ierr = user->mms_solution(user,&c,&ue);CHKERRQ(ierr);}
452c4762a1bSJed Brown         if (j-1 == 0) {c.x = i*hx; c.y = (j-1)*hy; ierr = user->mms_solution(user,&c,&un);CHKERRQ(ierr);}
453c4762a1bSJed Brown         if (j+1 == info->my-1) {c.x = i*hx; c.y = (j+1)*hy; ierr = user->mms_solution(user,&c,&us);CHKERRQ(ierr);}
454c4762a1bSJed Brown 
455c4762a1bSJed Brown         uxx     = (2.0*u - uw - ue)*hydhx;
456c4762a1bSJed Brown         uyy     = (2.0*u - un - us)*hxdhy;
457c4762a1bSJed Brown         mms_forcing = 0;
458c4762a1bSJed Brown         c.x = i*hx; c.y = j*hy;
459c4762a1bSJed Brown         if (user->mms_forcing) {ierr = user->mms_forcing(user,&c,&mms_forcing);CHKERRQ(ierr);}
460c4762a1bSJed Brown         f[j][i] = uxx + uyy - hx*hy*(lambda*PetscExpScalar(u) + mms_forcing);
461c4762a1bSJed Brown       }
462c4762a1bSJed Brown     }
463c4762a1bSJed Brown   }
464c4762a1bSJed Brown   ierr = PetscLogFlops(11.0*info->ym*info->xm);CHKERRQ(ierr);
465c4762a1bSJed Brown   PetscFunctionReturn(0);
466c4762a1bSJed Brown }
467c4762a1bSJed Brown 
468c4762a1bSJed Brown /* FormObjectiveLocal - Evaluates nonlinear function, F(x) on local process patch */
469c4762a1bSJed Brown PetscErrorCode FormObjectiveLocal(DMDALocalInfo *info,PetscScalar **x,PetscReal *obj,AppCtx *user)
470c4762a1bSJed Brown {
471c4762a1bSJed Brown   PetscErrorCode ierr;
472c4762a1bSJed Brown   PetscInt       i,j;
473c4762a1bSJed Brown   PetscReal      lambda,hx,hy,hxdhy,hydhx,sc,lobj=0;
474c4762a1bSJed Brown   PetscScalar    u,ue,uw,un,us,uxux,uyuy;
475c4762a1bSJed Brown   MPI_Comm       comm;
476c4762a1bSJed Brown 
477c4762a1bSJed Brown   PetscFunctionBeginUser;
478c4762a1bSJed Brown   *obj   = 0;
479c4762a1bSJed Brown   ierr = PetscObjectGetComm((PetscObject)info->da,&comm);CHKERRQ(ierr);
480c4762a1bSJed Brown   lambda = user->param;
481c4762a1bSJed Brown   hx     = 1.0/(PetscReal)(info->mx-1);
482c4762a1bSJed Brown   hy     = 1.0/(PetscReal)(info->my-1);
483c4762a1bSJed Brown   sc     = hx*hy*lambda;
484c4762a1bSJed Brown   hxdhy  = hx/hy;
485c4762a1bSJed Brown   hydhx  = hy/hx;
486c4762a1bSJed Brown   /*
487c4762a1bSJed Brown      Compute function over the locally owned part of the grid
488c4762a1bSJed Brown   */
489c4762a1bSJed Brown   for (j=info->ys; j<info->ys+info->ym; j++) {
490c4762a1bSJed Brown     for (i=info->xs; i<info->xs+info->xm; i++) {
491c4762a1bSJed Brown       if (i == 0 || j == 0 || i == info->mx-1 || j == info->my-1) {
492c4762a1bSJed Brown         lobj += PetscRealPart((hydhx + hxdhy)*x[j][i]*x[j][i]);
493c4762a1bSJed Brown       } else {
494c4762a1bSJed Brown         u  = x[j][i];
495c4762a1bSJed Brown         uw = x[j][i-1];
496c4762a1bSJed Brown         ue = x[j][i+1];
497c4762a1bSJed Brown         un = x[j-1][i];
498c4762a1bSJed Brown         us = x[j+1][i];
499c4762a1bSJed Brown 
500c4762a1bSJed Brown         if (i-1 == 0) uw = 0.;
501c4762a1bSJed Brown         if (i+1 == info->mx-1) ue = 0.;
502c4762a1bSJed Brown         if (j-1 == 0) un = 0.;
503c4762a1bSJed Brown         if (j+1 == info->my-1) us = 0.;
504c4762a1bSJed Brown 
505c4762a1bSJed Brown         /* F[u] = 1/2\int_{\omega}\nabla^2u(x)*u(x)*dx */
506c4762a1bSJed Brown 
507c4762a1bSJed Brown         uxux = u*(2.*u - ue - uw)*hydhx;
508c4762a1bSJed Brown         uyuy = u*(2.*u - un - us)*hxdhy;
509c4762a1bSJed Brown 
510c4762a1bSJed Brown         lobj += PetscRealPart(0.5*(uxux + uyuy) - sc*PetscExpScalar(u));
511c4762a1bSJed Brown       }
512c4762a1bSJed Brown     }
513c4762a1bSJed Brown   }
514c4762a1bSJed Brown   ierr = PetscLogFlops(12.0*info->ym*info->xm);CHKERRQ(ierr);
515c4762a1bSJed Brown   ierr = MPI_Allreduce(&lobj,obj,1,MPIU_REAL,MPIU_SUM,comm);CHKERRQ(ierr);
516c4762a1bSJed Brown   PetscFunctionReturn(0);
517c4762a1bSJed Brown }
518c4762a1bSJed Brown 
519c4762a1bSJed Brown /*
520c4762a1bSJed Brown    FormJacobianLocal - Evaluates Jacobian matrix on local process patch
521c4762a1bSJed Brown */
522c4762a1bSJed Brown PetscErrorCode FormJacobianLocal(DMDALocalInfo *info,PetscScalar **x,Mat jac,Mat jacpre,AppCtx *user)
523c4762a1bSJed Brown {
524c4762a1bSJed Brown   PetscErrorCode ierr;
525c4762a1bSJed Brown   PetscInt       i,j,k;
526c4762a1bSJed Brown   MatStencil     col[5],row;
527c4762a1bSJed Brown   PetscScalar    lambda,v[5],hx,hy,hxdhy,hydhx,sc;
528c4762a1bSJed Brown   DM             coordDA;
529c4762a1bSJed Brown   Vec            coordinates;
530c4762a1bSJed Brown   DMDACoor2d   **coords;
531c4762a1bSJed Brown 
532c4762a1bSJed Brown   PetscFunctionBeginUser;
533c4762a1bSJed Brown   lambda = user->param;
534c4762a1bSJed Brown   /* Extract coordinates */
535c4762a1bSJed Brown   ierr = DMGetCoordinateDM(info->da, &coordDA);CHKERRQ(ierr);
536c4762a1bSJed Brown   ierr = DMGetCoordinates(info->da, &coordinates);CHKERRQ(ierr);
537c4762a1bSJed Brown   ierr = DMDAVecGetArray(coordDA, coordinates, &coords);CHKERRQ(ierr);
538c4762a1bSJed Brown   hx     = info->xm > 1 ? PetscRealPart(coords[info->ys][info->xs+1].x) - PetscRealPart(coords[info->ys][info->xs].x) : 1.0;
539c4762a1bSJed Brown   hy     = info->ym > 1 ? PetscRealPart(coords[info->ys+1][info->xs].y) - PetscRealPart(coords[info->ys][info->xs].y) : 1.0;
540c4762a1bSJed Brown   ierr = DMDAVecRestoreArray(coordDA, coordinates, &coords);CHKERRQ(ierr);
541c4762a1bSJed Brown   hxdhy  = hx/hy;
542c4762a1bSJed Brown   hydhx  = hy/hx;
543c4762a1bSJed Brown   sc     = hx*hy*lambda;
544c4762a1bSJed Brown 
545c4762a1bSJed Brown 
546c4762a1bSJed Brown   /*
547c4762a1bSJed Brown      Compute entries for the locally owned part of the Jacobian.
548c4762a1bSJed Brown       - Currently, all PETSc parallel matrix formats are partitioned by
549c4762a1bSJed Brown         contiguous chunks of rows across the processors.
550c4762a1bSJed Brown       - Each processor needs to insert only elements that it owns
551c4762a1bSJed Brown         locally (but any non-local elements will be sent to the
552c4762a1bSJed Brown         appropriate processor during matrix assembly).
553c4762a1bSJed Brown       - Here, we set all entries for a particular row at once.
554c4762a1bSJed Brown       - We can set matrix entries either using either
555c4762a1bSJed Brown         MatSetValuesLocal() or MatSetValues(), as discussed above.
556c4762a1bSJed Brown   */
557c4762a1bSJed Brown   for (j=info->ys; j<info->ys+info->ym; j++) {
558c4762a1bSJed Brown     for (i=info->xs; i<info->xs+info->xm; i++) {
559c4762a1bSJed Brown       row.j = j; row.i = i;
560c4762a1bSJed Brown       /* boundary points */
561c4762a1bSJed Brown       if (i == 0 || j == 0 || i == info->mx-1 || j == info->my-1) {
562c4762a1bSJed Brown         v[0] =  2.0*(hydhx + hxdhy);
563c4762a1bSJed Brown         ierr = MatSetValuesStencil(jacpre,1,&row,1,&row,v,INSERT_VALUES);CHKERRQ(ierr);
564c4762a1bSJed Brown       } else {
565c4762a1bSJed Brown         k = 0;
566c4762a1bSJed Brown         /* interior grid points */
567c4762a1bSJed Brown         if (j-1 != 0) {
568c4762a1bSJed Brown           v[k]     = -hxdhy;
569c4762a1bSJed Brown           col[k].j = j - 1; col[k].i = i;
570c4762a1bSJed Brown           k++;
571c4762a1bSJed Brown         }
572c4762a1bSJed Brown         if (i-1 != 0) {
573c4762a1bSJed Brown           v[k]     = -hydhx;
574c4762a1bSJed Brown           col[k].j = j;     col[k].i = i-1;
575c4762a1bSJed Brown           k++;
576c4762a1bSJed Brown         }
577c4762a1bSJed Brown 
578c4762a1bSJed Brown         v[k] = 2.0*(hydhx + hxdhy) - sc*PetscExpScalar(x[j][i]); col[k].j = row.j; col[k].i = row.i; k++;
579c4762a1bSJed Brown 
580c4762a1bSJed Brown         if (i+1 != info->mx-1) {
581c4762a1bSJed Brown           v[k]     = -hydhx;
582c4762a1bSJed Brown           col[k].j = j;     col[k].i = i+1;
583c4762a1bSJed Brown           k++;
584c4762a1bSJed Brown         }
585c4762a1bSJed Brown         if (j+1 != info->mx-1) {
586c4762a1bSJed Brown           v[k]     = -hxdhy;
587c4762a1bSJed Brown           col[k].j = j + 1; col[k].i = i;
588c4762a1bSJed Brown           k++;
589c4762a1bSJed Brown         }
590c4762a1bSJed Brown         ierr = MatSetValuesStencil(jacpre,1,&row,k,col,v,INSERT_VALUES);CHKERRQ(ierr);
591c4762a1bSJed Brown       }
592c4762a1bSJed Brown     }
593c4762a1bSJed Brown   }
594c4762a1bSJed Brown 
595c4762a1bSJed Brown   /*
596c4762a1bSJed Brown      Assemble matrix, using the 2-step process:
597c4762a1bSJed Brown        MatAssemblyBegin(), MatAssemblyEnd().
598c4762a1bSJed Brown   */
599c4762a1bSJed Brown   ierr = MatAssemblyBegin(jacpre,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
600c4762a1bSJed Brown   ierr = MatAssemblyEnd(jacpre,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
601c4762a1bSJed Brown   /*
602c4762a1bSJed Brown      Tell the matrix we will never add a new nonzero location to the
603c4762a1bSJed Brown      matrix. If we do, it will generate an error.
604c4762a1bSJed Brown   */
605c4762a1bSJed Brown   ierr = MatSetOption(jac,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
606c4762a1bSJed Brown   PetscFunctionReturn(0);
607c4762a1bSJed Brown }
608c4762a1bSJed Brown 
609c4762a1bSJed Brown PetscErrorCode FormFunctionMatlab(SNES snes,Vec X,Vec F,void *ptr)
610c4762a1bSJed Brown {
611*4e1ad211SJed Brown #if PetscDefined(HAVE_MATLAB_ENGINE)
612c4762a1bSJed Brown   AppCtx         *user = (AppCtx*)ptr;
613c4762a1bSJed Brown   PetscErrorCode ierr;
614c4762a1bSJed Brown   PetscInt       Mx,My;
615c4762a1bSJed Brown   PetscReal      lambda,hx,hy;
616c4762a1bSJed Brown   Vec            localX,localF;
617c4762a1bSJed Brown   MPI_Comm       comm;
618c4762a1bSJed Brown   DM             da;
619c4762a1bSJed Brown 
620c4762a1bSJed Brown   PetscFunctionBeginUser;
621c4762a1bSJed Brown   ierr = SNESGetDM(snes,&da);CHKERRQ(ierr);
622c4762a1bSJed Brown   ierr = DMGetLocalVector(da,&localX);CHKERRQ(ierr);
623c4762a1bSJed Brown   ierr = DMGetLocalVector(da,&localF);CHKERRQ(ierr);
624c4762a1bSJed Brown   ierr = PetscObjectSetName((PetscObject)localX,"localX");CHKERRQ(ierr);
625c4762a1bSJed Brown   ierr = PetscObjectSetName((PetscObject)localF,"localF");CHKERRQ(ierr);
626c4762a1bSJed Brown   ierr = DMDAGetInfo(da,PETSC_IGNORE,&Mx,&My,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE);CHKERRQ(ierr);
627c4762a1bSJed Brown 
628c4762a1bSJed Brown   lambda = user->param;
629c4762a1bSJed Brown   hx     = 1.0/(PetscReal)(Mx-1);
630c4762a1bSJed Brown   hy     = 1.0/(PetscReal)(My-1);
631c4762a1bSJed Brown 
632c4762a1bSJed Brown   ierr = PetscObjectGetComm((PetscObject)snes,&comm);CHKERRQ(ierr);
633c4762a1bSJed Brown   /*
634c4762a1bSJed Brown      Scatter ghost points to local vector,using the 2-step process
635c4762a1bSJed Brown         DMGlobalToLocalBegin(),DMGlobalToLocalEnd().
636c4762a1bSJed Brown      By placing code between these two statements, computations can be
637c4762a1bSJed Brown      done while messages are in transition.
638c4762a1bSJed Brown   */
639c4762a1bSJed Brown   ierr = DMGlobalToLocalBegin(da,X,INSERT_VALUES,localX);CHKERRQ(ierr);
640c4762a1bSJed Brown   ierr = DMGlobalToLocalEnd(da,X,INSERT_VALUES,localX);CHKERRQ(ierr);
641c4762a1bSJed Brown   ierr = PetscMatlabEnginePut(PETSC_MATLAB_ENGINE_(comm),(PetscObject)localX);CHKERRQ(ierr);
642c4762a1bSJed Brown   ierr = PetscMatlabEngineEvaluate(PETSC_MATLAB_ENGINE_(comm),"localF=ex5m(localX,%18.16e,%18.16e,%18.16e)",hx,hy,lambda);CHKERRQ(ierr);
643c4762a1bSJed Brown   ierr = PetscMatlabEngineGet(PETSC_MATLAB_ENGINE_(comm),(PetscObject)localF);CHKERRQ(ierr);
644c4762a1bSJed Brown 
645c4762a1bSJed Brown   /*
646c4762a1bSJed Brown      Insert values into global vector
647c4762a1bSJed Brown   */
648c4762a1bSJed Brown   ierr = DMLocalToGlobalBegin(da,localF,INSERT_VALUES,F);CHKERRQ(ierr);
649c4762a1bSJed Brown   ierr = DMLocalToGlobalEnd(da,localF,INSERT_VALUES,F);CHKERRQ(ierr);
650c4762a1bSJed Brown   ierr = DMRestoreLocalVector(da,&localX);CHKERRQ(ierr);
651c4762a1bSJed Brown   ierr = DMRestoreLocalVector(da,&localF);CHKERRQ(ierr);
652c4762a1bSJed Brown   PetscFunctionReturn(0);
653*4e1ad211SJed Brown #else
654*4e1ad211SJed Brown     return 0;                     /* Never called */
655c4762a1bSJed Brown #endif
656*4e1ad211SJed Brown }
657c4762a1bSJed Brown 
658c4762a1bSJed Brown /* ------------------------------------------------------------------- */
659c4762a1bSJed Brown /*
660c4762a1bSJed Brown       Applies some sweeps on nonlinear Gauss-Seidel on each process
661c4762a1bSJed Brown 
662c4762a1bSJed Brown  */
663c4762a1bSJed Brown PetscErrorCode NonlinearGS(SNES snes,Vec X, Vec B, void *ctx)
664c4762a1bSJed Brown {
665c4762a1bSJed Brown   PetscInt       i,j,k,Mx,My,xs,ys,xm,ym,its,tot_its,sweeps,l;
666c4762a1bSJed Brown   PetscErrorCode ierr;
667c4762a1bSJed Brown   PetscReal      lambda,hx,hy,hxdhy,hydhx,sc;
668c4762a1bSJed Brown   PetscScalar    **x,**b,bij,F,F0=0,J,u,un,us,ue,eu,uw,uxx,uyy,y;
669c4762a1bSJed Brown   PetscReal      atol,rtol,stol;
670c4762a1bSJed Brown   DM             da;
671c4762a1bSJed Brown   AppCtx         *user;
672c4762a1bSJed Brown   Vec            localX,localB;
673c4762a1bSJed Brown 
674c4762a1bSJed Brown   PetscFunctionBeginUser;
675c4762a1bSJed Brown   tot_its = 0;
676c4762a1bSJed Brown   ierr    = SNESNGSGetSweeps(snes,&sweeps);CHKERRQ(ierr);
677c4762a1bSJed Brown   ierr    = SNESNGSGetTolerances(snes,&atol,&rtol,&stol,&its);CHKERRQ(ierr);
678c4762a1bSJed Brown   ierr    = SNESGetDM(snes,&da);CHKERRQ(ierr);
679c4762a1bSJed Brown   ierr    = DMGetApplicationContext(da,(void**)&user);CHKERRQ(ierr);
680c4762a1bSJed Brown 
681c4762a1bSJed Brown   ierr = DMDAGetInfo(da,PETSC_IGNORE,&Mx,&My,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE);CHKERRQ(ierr);
682c4762a1bSJed Brown 
683c4762a1bSJed Brown   lambda = user->param;
684c4762a1bSJed Brown   hx     = 1.0/(PetscReal)(Mx-1);
685c4762a1bSJed Brown   hy     = 1.0/(PetscReal)(My-1);
686c4762a1bSJed Brown   sc     = hx*hy*lambda;
687c4762a1bSJed Brown   hxdhy  = hx/hy;
688c4762a1bSJed Brown   hydhx  = hy/hx;
689c4762a1bSJed Brown 
690c4762a1bSJed Brown 
691c4762a1bSJed Brown   ierr = DMGetLocalVector(da,&localX);CHKERRQ(ierr);
692c4762a1bSJed Brown   if (B) {
693c4762a1bSJed Brown     ierr = DMGetLocalVector(da,&localB);CHKERRQ(ierr);
694c4762a1bSJed Brown   }
695c4762a1bSJed Brown   for (l=0; l<sweeps; l++) {
696c4762a1bSJed Brown 
697c4762a1bSJed Brown     ierr = DMGlobalToLocalBegin(da,X,INSERT_VALUES,localX);CHKERRQ(ierr);
698c4762a1bSJed Brown     ierr = DMGlobalToLocalEnd(da,X,INSERT_VALUES,localX);CHKERRQ(ierr);
699c4762a1bSJed Brown     if (B) {
700c4762a1bSJed Brown       ierr = DMGlobalToLocalBegin(da,B,INSERT_VALUES,localB);CHKERRQ(ierr);
701c4762a1bSJed Brown       ierr = DMGlobalToLocalEnd(da,B,INSERT_VALUES,localB);CHKERRQ(ierr);
702c4762a1bSJed Brown     }
703c4762a1bSJed Brown     /*
704c4762a1bSJed Brown      Get a pointer to vector data.
705c4762a1bSJed Brown      - For default PETSc vectors, VecGetArray() returns a pointer to
706c4762a1bSJed Brown      the data array.  Otherwise, the routine is implementation dependent.
707c4762a1bSJed Brown      - You MUST call VecRestoreArray() when you no longer need access to
708c4762a1bSJed Brown      the array.
709c4762a1bSJed Brown      */
710c4762a1bSJed Brown     ierr = DMDAVecGetArray(da,localX,&x);CHKERRQ(ierr);
711c4762a1bSJed Brown     if (B) ierr = DMDAVecGetArray(da,localB,&b);CHKERRQ(ierr);
712c4762a1bSJed Brown     /*
713c4762a1bSJed Brown      Get local grid boundaries (for 2-dimensional DMDA):
714c4762a1bSJed Brown      xs, ys   - starting grid indices (no ghost points)
715c4762a1bSJed Brown      xm, ym   - widths of local grid (no ghost points)
716c4762a1bSJed Brown      */
717c4762a1bSJed Brown     ierr = DMDAGetCorners(da,&xs,&ys,NULL,&xm,&ym,NULL);CHKERRQ(ierr);
718c4762a1bSJed Brown 
719c4762a1bSJed Brown     for (j=ys; j<ys+ym; j++) {
720c4762a1bSJed Brown       for (i=xs; i<xs+xm; i++) {
721c4762a1bSJed Brown         if (i == 0 || j == 0 || i == Mx-1 || j == My-1) {
722c4762a1bSJed Brown           /* boundary conditions are all zero Dirichlet */
723c4762a1bSJed Brown           x[j][i] = 0.0;
724c4762a1bSJed Brown         } else {
725c4762a1bSJed Brown           if (B) bij = b[j][i];
726c4762a1bSJed Brown           else   bij = 0.;
727c4762a1bSJed Brown 
728c4762a1bSJed Brown           u  = x[j][i];
729c4762a1bSJed Brown           un = x[j-1][i];
730c4762a1bSJed Brown           us = x[j+1][i];
731c4762a1bSJed Brown           ue = x[j][i-1];
732c4762a1bSJed Brown           uw = x[j][i+1];
733c4762a1bSJed Brown 
734c4762a1bSJed Brown           for (k=0; k<its; k++) {
735c4762a1bSJed Brown             eu  = PetscExpScalar(u);
736c4762a1bSJed Brown             uxx = (2.0*u - ue - uw)*hydhx;
737c4762a1bSJed Brown             uyy = (2.0*u - un - us)*hxdhy;
738c4762a1bSJed Brown             F   = uxx + uyy - sc*eu - bij;
739c4762a1bSJed Brown             if (k == 0) F0 = F;
740c4762a1bSJed Brown             J  = 2.0*(hydhx + hxdhy) - sc*eu;
741c4762a1bSJed Brown             y  = F/J;
742c4762a1bSJed Brown             u -= y;
743c4762a1bSJed Brown             tot_its++;
744c4762a1bSJed Brown 
745c4762a1bSJed Brown             if (atol > PetscAbsReal(PetscRealPart(F)) ||
746c4762a1bSJed Brown                 rtol*PetscAbsReal(PetscRealPart(F0)) > PetscAbsReal(PetscRealPart(F)) ||
747c4762a1bSJed Brown                 stol*PetscAbsReal(PetscRealPart(u)) > PetscAbsReal(PetscRealPart(y))) {
748c4762a1bSJed Brown               break;
749c4762a1bSJed Brown             }
750c4762a1bSJed Brown           }
751c4762a1bSJed Brown           x[j][i] = u;
752c4762a1bSJed Brown         }
753c4762a1bSJed Brown       }
754c4762a1bSJed Brown     }
755c4762a1bSJed Brown     /*
756c4762a1bSJed Brown      Restore vector
757c4762a1bSJed Brown      */
758c4762a1bSJed Brown     ierr = DMDAVecRestoreArray(da,localX,&x);CHKERRQ(ierr);
759c4762a1bSJed Brown     ierr = DMLocalToGlobalBegin(da,localX,INSERT_VALUES,X);CHKERRQ(ierr);
760c4762a1bSJed Brown     ierr = DMLocalToGlobalEnd(da,localX,INSERT_VALUES,X);CHKERRQ(ierr);
761c4762a1bSJed Brown   }
762c4762a1bSJed Brown   ierr = PetscLogFlops(tot_its*(21.0));CHKERRQ(ierr);
763c4762a1bSJed Brown   ierr = DMRestoreLocalVector(da,&localX);CHKERRQ(ierr);
764c4762a1bSJed Brown   if (B) {
765c4762a1bSJed Brown     ierr = DMDAVecRestoreArray(da,localB,&b);CHKERRQ(ierr);
766c4762a1bSJed Brown     ierr = DMRestoreLocalVector(da,&localB);CHKERRQ(ierr);
767c4762a1bSJed Brown   }
768c4762a1bSJed Brown   PetscFunctionReturn(0);
769c4762a1bSJed Brown }
770c4762a1bSJed Brown 
771c4762a1bSJed Brown /*TEST
772c4762a1bSJed Brown 
773c4762a1bSJed Brown    test:
774c4762a1bSJed Brown      suffix: asm_0
775c4762a1bSJed Brown      requires: !single
776c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu
777c4762a1bSJed Brown 
778c4762a1bSJed Brown    test:
779c4762a1bSJed Brown      suffix: msm_0
780c4762a1bSJed Brown      requires: !single
781c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu
782c4762a1bSJed Brown 
783c4762a1bSJed Brown    test:
784c4762a1bSJed Brown      suffix: asm_1
785c4762a1bSJed Brown      requires: !single
786c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu -da_grid_x 8
787c4762a1bSJed Brown 
788c4762a1bSJed Brown    test:
789c4762a1bSJed Brown      suffix: msm_1
790c4762a1bSJed Brown      requires: !single
791c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu -da_grid_x 8
792c4762a1bSJed Brown 
793c4762a1bSJed Brown    test:
794c4762a1bSJed Brown      suffix: asm_2
795c4762a1bSJed Brown      requires: !single
796c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 3 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu -da_grid_x 8
797c4762a1bSJed Brown 
798c4762a1bSJed Brown    test:
799c4762a1bSJed Brown      suffix: msm_2
800c4762a1bSJed Brown      requires: !single
801c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 3 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu -da_grid_x 8
802c4762a1bSJed Brown 
803c4762a1bSJed Brown    test:
804c4762a1bSJed Brown      suffix: asm_3
805c4762a1bSJed Brown      requires: !single
806c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 4 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu -da_grid_x 8
807c4762a1bSJed Brown 
808c4762a1bSJed Brown    test:
809c4762a1bSJed Brown      suffix: msm_3
810c4762a1bSJed Brown      requires: !single
811c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 4 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu -da_grid_x 8
812c4762a1bSJed Brown 
813c4762a1bSJed Brown    test:
814c4762a1bSJed Brown      suffix: asm_4
815c4762a1bSJed Brown      requires: !single
816c4762a1bSJed Brown      nsize: 2
817c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu -da_grid_x 8
818c4762a1bSJed Brown 
819c4762a1bSJed Brown    test:
820c4762a1bSJed Brown      suffix: msm_4
821c4762a1bSJed Brown      requires: !single
822c4762a1bSJed Brown      nsize: 2
823c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu -da_grid_x 8
824c4762a1bSJed Brown 
825c4762a1bSJed Brown    test:
826c4762a1bSJed Brown      suffix: asm_5
827c4762a1bSJed Brown      requires: !single
828c4762a1bSJed Brown      nsize: 2
829c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 4 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu -da_grid_x 8
830c4762a1bSJed Brown 
831c4762a1bSJed Brown    test:
832c4762a1bSJed Brown      suffix: msm_5
833c4762a1bSJed Brown      requires: !single
834c4762a1bSJed Brown      nsize: 2
835c4762a1bSJed Brown      args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 4 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu -da_grid_x 8
836c4762a1bSJed Brown 
837c4762a1bSJed Brown    test:
838c4762a1bSJed Brown      args: -snes_rtol 1.e-5 -pc_type mg -ksp_monitor_short -snes_view -pc_mg_levels 3 -pc_mg_galerkin pmat -da_grid_x 17 -da_grid_y 17 -mg_levels_ksp_monitor_short -mg_levels_ksp_norm_type unpreconditioned -snes_monitor_short -mg_levels_ksp_chebyshev_esteig 0.5,1.1 -mg_levels_pc_type sor -pc_mg_type full
839c4762a1bSJed Brown      requires: !single
840c4762a1bSJed Brown 
841c4762a1bSJed Brown    test:
842c4762a1bSJed Brown      suffix: 2
843c4762a1bSJed Brown      args: -pc_type mg -ksp_converged_reason -snes_view -pc_mg_galerkin pmat -snes_grid_sequence 3 -mg_levels_ksp_norm_type unpreconditioned -snes_monitor_short -mg_levels_ksp_chebyshev_esteig 0.5,1.1 -mg_levels_pc_type sor -pc_mg_type full -ksp_atol -1.
844c4762a1bSJed Brown 
845c4762a1bSJed Brown    test:
846c4762a1bSJed Brown      suffix: 3
847c4762a1bSJed Brown      nsize: 2
848c4762a1bSJed Brown      args: -snes_grid_sequence 2 -snes_mf_operator -snes_converged_reason -snes_view -pc_type mg -snes_atol -1 -snes_rtol 1.e-2
849c4762a1bSJed Brown      filter: grep -v "otal number of function evaluations"
850c4762a1bSJed Brown 
851c4762a1bSJed Brown    test:
852c4762a1bSJed Brown      suffix: 4
853c4762a1bSJed Brown      nsize: 2
854c4762a1bSJed Brown      args: -snes_grid_sequence 2 -snes_monitor_short -ksp_converged_reason -snes_converged_reason -snes_view -pc_type mg -snes_atol -1 -ksp_atol -1
855c4762a1bSJed Brown 
856c4762a1bSJed Brown    test:
857c4762a1bSJed Brown      suffix: 5_anderson
858c4762a1bSJed Brown      args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type anderson
859c4762a1bSJed Brown 
860c4762a1bSJed Brown    test:
861c4762a1bSJed Brown      suffix: 5_aspin
862c4762a1bSJed Brown      nsize: 4
863c4762a1bSJed Brown      args: -snes_monitor_short -ksp_monitor_short -snes_converged_reason -da_refine 4 -da_overlap 3 -snes_type aspin -snes_view
864c4762a1bSJed Brown 
865c4762a1bSJed Brown    test:
866c4762a1bSJed Brown      suffix: 5_broyden
867c4762a1bSJed Brown      args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type qn -snes_qn_type broyden -snes_qn_m 10
868c4762a1bSJed Brown 
869c4762a1bSJed Brown    test:
870c4762a1bSJed Brown      suffix: 5_fas
871c4762a1bSJed Brown      args: -fas_coarse_snes_max_it 1 -fas_coarse_pc_type lu -fas_coarse_ksp_type preonly -snes_monitor_short -snes_type fas -fas_coarse_ksp_type richardson -da_refine 6
872c4762a1bSJed Brown      requires: !single
873c4762a1bSJed Brown 
874c4762a1bSJed Brown    test:
875c4762a1bSJed Brown      suffix: 5_fas_additive
876c4762a1bSJed Brown      args: -fas_coarse_snes_max_it 1 -fas_coarse_pc_type lu -fas_coarse_ksp_type preonly -snes_monitor_short -snes_type fas -fas_coarse_ksp_type richardson -da_refine 6 -snes_fas_type additive -snes_max_it 50
877c4762a1bSJed Brown 
878c4762a1bSJed Brown    test:
879c4762a1bSJed Brown      suffix: 5_fas_monitor
880c4762a1bSJed Brown      args: -da_refine 1 -snes_type fas -snes_fas_monitor
881c4762a1bSJed Brown      requires: !single
882c4762a1bSJed Brown 
883c4762a1bSJed Brown    test:
884c4762a1bSJed Brown      suffix: 5_ls
885c4762a1bSJed Brown      args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type newtonls
886c4762a1bSJed Brown 
887c4762a1bSJed Brown    test:
888c4762a1bSJed Brown      suffix: 5_ls_sell_sor
889c4762a1bSJed Brown      args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type newtonls -dm_mat_type sell -pc_type sor
890c4762a1bSJed Brown      output_file: output/ex5_5_ls.out
891c4762a1bSJed Brown 
892c4762a1bSJed Brown    test:
893c4762a1bSJed Brown      suffix: 5_nasm
894c4762a1bSJed Brown      nsize: 4
895c4762a1bSJed Brown      args: -snes_monitor_short -snes_converged_reason -da_refine 4 -da_overlap 3 -snes_type nasm -snes_nasm_type restrict -snes_max_it 10
896c4762a1bSJed Brown 
897c4762a1bSJed Brown    test:
898c4762a1bSJed Brown      suffix: 5_ncg
899c4762a1bSJed Brown      args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type ncg -snes_ncg_type fr
900c4762a1bSJed Brown 
901c4762a1bSJed Brown    test:
902c4762a1bSJed Brown      suffix: 5_newton_asm_dmda
903c4762a1bSJed Brown      nsize: 4
904c4762a1bSJed Brown      args: -snes_monitor_short -ksp_monitor_short -snes_converged_reason -da_refine 4 -da_overlap 3 -snes_type newtonls -pc_type asm -pc_asm_dm_subdomains -malloc_dump
905c4762a1bSJed Brown      requires: !single
906c4762a1bSJed Brown 
907c4762a1bSJed Brown    test:
908c4762a1bSJed Brown      suffix: 5_newton_gasm_dmda
909c4762a1bSJed Brown      nsize: 4
910c4762a1bSJed Brown      args: -snes_monitor_short -ksp_monitor_short -snes_converged_reason -da_refine 4 -da_overlap 3 -snes_type newtonls -pc_type gasm -malloc_dump
911c4762a1bSJed Brown      requires: !single
912c4762a1bSJed Brown 
913c4762a1bSJed Brown    test:
914c4762a1bSJed Brown      suffix: 5_ngmres
915c4762a1bSJed Brown      args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type ngmres -snes_ngmres_m 10
916c4762a1bSJed Brown 
917c4762a1bSJed Brown    test:
918c4762a1bSJed Brown      suffix: 5_ngmres_fas
919c4762a1bSJed Brown      args: -snes_rtol 1.e-4 -snes_type ngmres -npc_fas_coarse_snes_max_it 1 -npc_fas_coarse_snes_type newtonls -npc_fas_coarse_pc_type lu -npc_fas_coarse_ksp_type preonly -snes_ngmres_m 10 -snes_monitor_short -npc_snes_max_it 1 -npc_snes_type fas -npc_fas_coarse_ksp_type richardson -da_refine 6
920c4762a1bSJed Brown 
921c4762a1bSJed Brown    test:
922c4762a1bSJed Brown      suffix: 5_ngmres_ngs
923c4762a1bSJed Brown      args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type ngmres -npc_snes_type ngs -npc_snes_max_it 1
924c4762a1bSJed Brown 
925c4762a1bSJed Brown    test:
926c4762a1bSJed Brown      suffix: 5_ngmres_nrichardson
927c4762a1bSJed Brown      args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type ngmres -snes_ngmres_m 10 -npc_snes_type nrichardson -npc_snes_max_it 3
928c4762a1bSJed Brown      output_file: output/ex5_5_ngmres_richardson.out
929c4762a1bSJed Brown 
930c4762a1bSJed Brown    test:
931c4762a1bSJed Brown      suffix: 5_nrichardson
932c4762a1bSJed Brown      args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type nrichardson
933c4762a1bSJed Brown 
934c4762a1bSJed Brown    test:
935c4762a1bSJed Brown      suffix: 5_qn
936c4762a1bSJed Brown      args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type qn -snes_linesearch_type cp -snes_qn_m 10
937c4762a1bSJed Brown 
938c4762a1bSJed Brown    test:
939c4762a1bSJed Brown      suffix: 6
940c4762a1bSJed Brown      nsize: 4
941c4762a1bSJed Brown      args: -snes_converged_reason -ksp_converged_reason -da_grid_x 129 -da_grid_y 129 -pc_type mg -pc_mg_levels 8 -mg_levels_ksp_type chebyshev -mg_levels_ksp_chebyshev_esteig 0,0.5,0,1.1 -mg_levels_ksp_max_it 2
942c4762a1bSJed Brown 
943c4762a1bSJed Brown    test:
944c4762a1bSJed Brown      requires: complex !single
945c4762a1bSJed Brown      suffix: complex
946c4762a1bSJed Brown      args: -snes_mf_operator -mat_mffd_complex -snes_monitor
947c4762a1bSJed Brown 
948c4762a1bSJed Brown TEST*/
949