1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/snesimpl.h> /*I "petscsnes.h" I*/ 324cdb843SMatthew G. Knepley #include <petscds.h> 4af0996ceSBarry Smith #include <petsc/private/petscimpl.h> 5af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 6552f7358SJed Brown 7d2b2dc1eSMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 8d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 9d2b2dc1eSMatthew G. Knepley #include <petscdmplexceed.h> 10d2b2dc1eSMatthew G. Knepley #endif 11d2b2dc1eSMatthew G. Knepley 12d71ae5a4SJacob Faibussowitsch static void pressure_Private(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar p[]) 13d71ae5a4SJacob Faibussowitsch { 14649ef022SMatthew Knepley p[0] = u[uOff[1]]; 15649ef022SMatthew Knepley } 16649ef022SMatthew Knepley 17649ef022SMatthew Knepley /* 1820f4b53cSBarry Smith SNESCorrectDiscretePressure_Private - Add a vector in the nullspace to make the continuum integral of the pressure field equal to zero. 1920f4b53cSBarry Smith This is normally used only to evaluate convergence rates for the pressure accurately. 20649ef022SMatthew Knepley 21c3339decSBarry Smith Collective 22649ef022SMatthew Knepley 23649ef022SMatthew Knepley Input Parameters: 24420bcc1bSBarry Smith + snes - The `SNES` 25649ef022SMatthew Knepley . pfield - The field number for pressure 26649ef022SMatthew Knepley . nullspace - The pressure nullspace 27649ef022SMatthew Knepley . u - The solution vector 28649ef022SMatthew Knepley - ctx - An optional user context 29649ef022SMatthew Knepley 30649ef022SMatthew Knepley Output Parameter: 31649ef022SMatthew Knepley . u - The solution with a continuum pressure integral of zero 32649ef022SMatthew Knepley 332fe279fdSBarry Smith Level: developer 342fe279fdSBarry Smith 35420bcc1bSBarry Smith Note: 36649ef022SMatthew Knepley If int(u) = a and int(n) = b, then int(u - a/b n) = a - a/b b = 0. We assume that the nullspace is a single vector given explicitly. 37649ef022SMatthew Knepley 38420bcc1bSBarry Smith .seealso: [](ch_snes), `SNESConvergedCorrectPressure()` 39649ef022SMatthew Knepley */ 40d71ae5a4SJacob Faibussowitsch static PetscErrorCode SNESCorrectDiscretePressure_Private(SNES snes, PetscInt pfield, MatNullSpace nullspace, Vec u, void *ctx) 41d71ae5a4SJacob Faibussowitsch { 42649ef022SMatthew Knepley DM dm; 43649ef022SMatthew Knepley PetscDS ds; 44649ef022SMatthew Knepley const Vec *nullvecs; 45649ef022SMatthew Knepley PetscScalar pintd, *intc, *intn; 46649ef022SMatthew Knepley MPI_Comm comm; 47649ef022SMatthew Knepley PetscInt Nf, Nv; 48649ef022SMatthew Knepley 49649ef022SMatthew Knepley PetscFunctionBegin; 509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)snes, &comm)); 519566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 5228b400f6SJacob Faibussowitsch PetscCheck(dm, comm, PETSC_ERR_ARG_WRONG, "Cannot compute test without a SNES DM"); 5328b400f6SJacob Faibussowitsch PetscCheck(nullspace, comm, PETSC_ERR_ARG_WRONG, "Cannot compute test without a Jacobian nullspace"); 549566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 559566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(ds, pfield, pressure_Private)); 569566063dSJacob Faibussowitsch PetscCall(MatNullSpaceGetVecs(nullspace, NULL, &Nv, &nullvecs)); 5763a3b9bcSJacob Faibussowitsch PetscCheck(Nv == 1, comm, PETSC_ERR_ARG_OUTOFRANGE, "Can only handle a single null vector for pressure, not %" PetscInt_FMT, Nv); 589566063dSJacob Faibussowitsch PetscCall(VecDot(nullvecs[0], u, &pintd)); 5908401ef6SPierre Jolivet PetscCheck(PetscAbsScalar(pintd) <= PETSC_SMALL, comm, PETSC_ERR_ARG_WRONG, "Discrete integral of pressure: %g", (double)PetscRealPart(pintd)); 609566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 619566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &intc, Nf, &intn)); 629566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, nullvecs[0], intn, ctx)); 639566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, u, intc, ctx)); 649566063dSJacob Faibussowitsch PetscCall(VecAXPY(u, -intc[pfield] / intn[pfield], nullvecs[0])); 65649ef022SMatthew Knepley #if defined(PETSC_USE_DEBUG) 669566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, u, intc, ctx)); 6708401ef6SPierre Jolivet PetscCheck(PetscAbsScalar(intc[pfield]) <= PETSC_SMALL, comm, PETSC_ERR_ARG_WRONG, "Continuum integral of pressure after correction: %g", (double)PetscRealPart(intc[pfield])); 68649ef022SMatthew Knepley #endif 699566063dSJacob Faibussowitsch PetscCall(PetscFree2(intc, intn)); 703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71649ef022SMatthew Knepley } 72649ef022SMatthew Knepley 73649ef022SMatthew Knepley /*@C 74ceaaa498SBarry Smith SNESConvergedCorrectPressure - The regular `SNES` convergence test that, up on convergence, adds a vector in the nullspace 75ceaaa498SBarry Smith to make the continuum integral of the pressure field equal to zero. 76649ef022SMatthew Knepley 77c3339decSBarry Smith Logically Collective 78649ef022SMatthew Knepley 79649ef022SMatthew Knepley Input Parameters: 80f6dfbefdSBarry Smith + snes - the `SNES` context 81649ef022SMatthew Knepley . it - the iteration (0 indicates before any Newton steps) 82649ef022SMatthew Knepley . xnorm - 2-norm of current iterate 83e4094ef1SJacob Faibussowitsch . gnorm - 2-norm of current step 84e4094ef1SJacob Faibussowitsch . f - 2-norm of function at current iterate 85649ef022SMatthew Knepley - ctx - Optional user context 86649ef022SMatthew Knepley 87649ef022SMatthew Knepley Output Parameter: 88f6dfbefdSBarry Smith . reason - `SNES_CONVERGED_ITERATING`, `SNES_CONVERGED_ITS`, or `SNES_DIVERGED_FNORM_NAN` 89649ef022SMatthew Knepley 9020f4b53cSBarry Smith Options Database Key: 9120f4b53cSBarry Smith . -snes_convergence_test correct_pressure - see `SNESSetFromOptions()` 9220f4b53cSBarry Smith 9320f4b53cSBarry Smith Level: advanced 9420f4b53cSBarry Smith 95649ef022SMatthew Knepley Notes: 96f6dfbefdSBarry Smith In order to use this convergence test, you must set up several PETSc structures. First fields must be added to the `DM`, and a `PetscDS` 97f6dfbefdSBarry Smith must be created with discretizations of those fields. We currently assume that the pressure field has index 1. 98f6dfbefdSBarry Smith The pressure field must have a nullspace, likely created using the `DMSetNullSpaceConstructor()` interface. 99f6dfbefdSBarry Smith Last we must be able to integrate the pressure over the domain, so the `DM` attached to the SNES `must` be a `DMPLEX` at this time. 100f362779dSJed Brown 101ceaaa498SBarry Smith Developer Note: 102ceaaa498SBarry Smith This is a total misuse of the `SNES` convergence test handling system. It should be removed. Perhaps a `SNESSetPostSolve()` could 103ceaaa498SBarry Smith be constructed to handle this process. 104ceaaa498SBarry Smith 105420bcc1bSBarry Smith .seealso: [](ch_snes), `SNES`, `DM`, `SNESConvergedDefault()`, `SNESSetConvergenceTest()`, `DMSetNullSpaceConstructor()` 106649ef022SMatthew Knepley @*/ 107d71ae5a4SJacob Faibussowitsch PetscErrorCode SNESConvergedCorrectPressure(SNES snes, PetscInt it, PetscReal xnorm, PetscReal gnorm, PetscReal f, SNESConvergedReason *reason, void *ctx) 108d71ae5a4SJacob Faibussowitsch { 109649ef022SMatthew Knepley PetscBool monitorIntegral = PETSC_FALSE; 110649ef022SMatthew Knepley 111649ef022SMatthew Knepley PetscFunctionBegin; 1129566063dSJacob Faibussowitsch PetscCall(SNESConvergedDefault(snes, it, xnorm, gnorm, f, reason, ctx)); 113649ef022SMatthew Knepley if (monitorIntegral) { 114649ef022SMatthew Knepley Mat J; 115649ef022SMatthew Knepley Vec u; 116649ef022SMatthew Knepley MatNullSpace nullspace; 117649ef022SMatthew Knepley const Vec *nullvecs; 118649ef022SMatthew Knepley PetscScalar pintd; 119649ef022SMatthew Knepley 1209566063dSJacob Faibussowitsch PetscCall(SNESGetSolution(snes, &u)); 1219566063dSJacob Faibussowitsch PetscCall(SNESGetJacobian(snes, &J, NULL, NULL, NULL)); 1229566063dSJacob Faibussowitsch PetscCall(MatGetNullSpace(J, &nullspace)); 1239566063dSJacob Faibussowitsch PetscCall(MatNullSpaceGetVecs(nullspace, NULL, NULL, &nullvecs)); 1249566063dSJacob Faibussowitsch PetscCall(VecDot(nullvecs[0], u, &pintd)); 1259566063dSJacob Faibussowitsch PetscCall(PetscInfo(snes, "SNES: Discrete integral of pressure: %g\n", (double)PetscRealPart(pintd))); 126649ef022SMatthew Knepley } 127649ef022SMatthew Knepley if (*reason > 0) { 128649ef022SMatthew Knepley Mat J; 129649ef022SMatthew Knepley Vec u; 130649ef022SMatthew Knepley MatNullSpace nullspace; 131649ef022SMatthew Knepley PetscInt pfield = 1; 132649ef022SMatthew Knepley 1339566063dSJacob Faibussowitsch PetscCall(SNESGetSolution(snes, &u)); 1349566063dSJacob Faibussowitsch PetscCall(SNESGetJacobian(snes, &J, NULL, NULL, NULL)); 1359566063dSJacob Faibussowitsch PetscCall(MatGetNullSpace(J, &nullspace)); 1369566063dSJacob Faibussowitsch PetscCall(SNESCorrectDiscretePressure_Private(snes, pfield, nullspace, u, ctx)); 137649ef022SMatthew Knepley } 1383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 139649ef022SMatthew Knepley } 140649ef022SMatthew Knepley 14124cdb843SMatthew G. Knepley /************************** Interpolation *******************************/ 14224cdb843SMatthew G. Knepley 143d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSNESConvertPlex(DM dm, DM *plex, PetscBool copy) 144d71ae5a4SJacob Faibussowitsch { 1456da023fcSToby Isaac PetscBool isPlex; 1466da023fcSToby Isaac 1476da023fcSToby Isaac PetscFunctionBegin; 1489566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 1496da023fcSToby Isaac if (isPlex) { 1506da023fcSToby Isaac *plex = dm; 1519566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 152f7148743SMatthew G. Knepley } else { 1539566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 154f7148743SMatthew G. Knepley if (!*plex) { 1559566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 1569566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 1576da023fcSToby Isaac if (copy) { 1589566063dSJacob Faibussowitsch PetscCall(DMCopyDMSNES(dm, *plex)); 1599566063dSJacob Faibussowitsch PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 1606da023fcSToby Isaac } 161f7148743SMatthew G. Knepley } else { 1629566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*plex)); 163f7148743SMatthew G. Knepley } 1646da023fcSToby Isaac } 1653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1666da023fcSToby Isaac } 1676da023fcSToby Isaac 1684267b1a3SMatthew G. Knepley /*@C 169f6dfbefdSBarry Smith DMInterpolationCreate - Creates a `DMInterpolationInfo` context 1704267b1a3SMatthew G. Knepley 171d083f849SBarry Smith Collective 1724267b1a3SMatthew G. Knepley 1734267b1a3SMatthew G. Knepley Input Parameter: 1744267b1a3SMatthew G. Knepley . comm - the communicator 1754267b1a3SMatthew G. Knepley 1764267b1a3SMatthew G. Knepley Output Parameter: 1774267b1a3SMatthew G. Knepley . ctx - the context 1784267b1a3SMatthew G. Knepley 1794267b1a3SMatthew G. Knepley Level: beginner 1804267b1a3SMatthew G. Knepley 181420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationDestroy()` 1824267b1a3SMatthew G. Knepley @*/ 183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationCreate(MPI_Comm comm, DMInterpolationInfo *ctx) 184d71ae5a4SJacob Faibussowitsch { 185552f7358SJed Brown PetscFunctionBegin; 1864f572ea9SToby Isaac PetscAssertPointer(ctx, 2); 1879566063dSJacob Faibussowitsch PetscCall(PetscNew(ctx)); 1881aa26658SKarl Rupp 189552f7358SJed Brown (*ctx)->comm = comm; 190552f7358SJed Brown (*ctx)->dim = -1; 191552f7358SJed Brown (*ctx)->nInput = 0; 1920298fd71SBarry Smith (*ctx)->points = NULL; 1930298fd71SBarry Smith (*ctx)->cells = NULL; 194552f7358SJed Brown (*ctx)->n = -1; 1950298fd71SBarry Smith (*ctx)->coords = NULL; 1963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 197552f7358SJed Brown } 198552f7358SJed Brown 1994267b1a3SMatthew G. Knepley /*@C 2004267b1a3SMatthew G. Knepley DMInterpolationSetDim - Sets the spatial dimension for the interpolation context 2014267b1a3SMatthew G. Knepley 20220f4b53cSBarry Smith Not Collective 2034267b1a3SMatthew G. Knepley 2044267b1a3SMatthew G. Knepley Input Parameters: 2054267b1a3SMatthew G. Knepley + ctx - the context 2064267b1a3SMatthew G. Knepley - dim - the spatial dimension 2074267b1a3SMatthew G. Knepley 2084267b1a3SMatthew G. Knepley Level: intermediate 2094267b1a3SMatthew G. Knepley 210420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationGetDim()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()` 2114267b1a3SMatthew G. Knepley @*/ 212d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationSetDim(DMInterpolationInfo ctx, PetscInt dim) 213d71ae5a4SJacob Faibussowitsch { 214552f7358SJed Brown PetscFunctionBegin; 21563a3b9bcSJacob Faibussowitsch PetscCheck(!(dim < 1) && !(dim > 3), ctx->comm, PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension for points: %" PetscInt_FMT, dim); 216552f7358SJed Brown ctx->dim = dim; 2173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 218552f7358SJed Brown } 219552f7358SJed Brown 2204267b1a3SMatthew G. Knepley /*@C 2214267b1a3SMatthew G. Knepley DMInterpolationGetDim - Gets the spatial dimension for the interpolation context 2224267b1a3SMatthew G. Knepley 22320f4b53cSBarry Smith Not Collective 2244267b1a3SMatthew G. Knepley 2254267b1a3SMatthew G. Knepley Input Parameter: 2264267b1a3SMatthew G. Knepley . ctx - the context 2274267b1a3SMatthew G. Knepley 2284267b1a3SMatthew G. Knepley Output Parameter: 2294267b1a3SMatthew G. Knepley . dim - the spatial dimension 2304267b1a3SMatthew G. Knepley 2314267b1a3SMatthew G. Knepley Level: intermediate 2324267b1a3SMatthew G. Knepley 233420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationSetDim()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()` 2344267b1a3SMatthew G. Knepley @*/ 235d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationGetDim(DMInterpolationInfo ctx, PetscInt *dim) 236d71ae5a4SJacob Faibussowitsch { 237552f7358SJed Brown PetscFunctionBegin; 2384f572ea9SToby Isaac PetscAssertPointer(dim, 2); 239552f7358SJed Brown *dim = ctx->dim; 2403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 241552f7358SJed Brown } 242552f7358SJed Brown 2434267b1a3SMatthew G. Knepley /*@C 2444267b1a3SMatthew G. Knepley DMInterpolationSetDof - Sets the number of fields interpolated at a point for the interpolation context 2454267b1a3SMatthew G. Knepley 24620f4b53cSBarry Smith Not Collective 2474267b1a3SMatthew G. Knepley 2484267b1a3SMatthew G. Knepley Input Parameters: 2494267b1a3SMatthew G. Knepley + ctx - the context 2504267b1a3SMatthew G. Knepley - dof - the number of fields 2514267b1a3SMatthew G. Knepley 2524267b1a3SMatthew G. Knepley Level: intermediate 2534267b1a3SMatthew G. Knepley 254420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationGetDof()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()` 2554267b1a3SMatthew G. Knepley @*/ 256d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationSetDof(DMInterpolationInfo ctx, PetscInt dof) 257d71ae5a4SJacob Faibussowitsch { 258552f7358SJed Brown PetscFunctionBegin; 25963a3b9bcSJacob Faibussowitsch PetscCheck(dof >= 1, ctx->comm, PETSC_ERR_ARG_OUTOFRANGE, "Invalid number of components: %" PetscInt_FMT, dof); 260552f7358SJed Brown ctx->dof = dof; 2613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 262552f7358SJed Brown } 263552f7358SJed Brown 2644267b1a3SMatthew G. Knepley /*@C 2654267b1a3SMatthew G. Knepley DMInterpolationGetDof - Gets the number of fields interpolated at a point for the interpolation context 2664267b1a3SMatthew G. Knepley 26720f4b53cSBarry Smith Not Collective 2684267b1a3SMatthew G. Knepley 2694267b1a3SMatthew G. Knepley Input Parameter: 2704267b1a3SMatthew G. Knepley . ctx - the context 2714267b1a3SMatthew G. Knepley 2724267b1a3SMatthew G. Knepley Output Parameter: 2734267b1a3SMatthew G. Knepley . dof - the number of fields 2744267b1a3SMatthew G. Knepley 2754267b1a3SMatthew G. Knepley Level: intermediate 2764267b1a3SMatthew G. Knepley 277420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationSetDof()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()` 2784267b1a3SMatthew G. Knepley @*/ 279d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationGetDof(DMInterpolationInfo ctx, PetscInt *dof) 280d71ae5a4SJacob Faibussowitsch { 281552f7358SJed Brown PetscFunctionBegin; 2824f572ea9SToby Isaac PetscAssertPointer(dof, 2); 283552f7358SJed Brown *dof = ctx->dof; 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 285552f7358SJed Brown } 286552f7358SJed Brown 2874267b1a3SMatthew G. Knepley /*@C 2884267b1a3SMatthew G. Knepley DMInterpolationAddPoints - Add points at which we will interpolate the fields 2894267b1a3SMatthew G. Knepley 29020f4b53cSBarry Smith Not Collective 2914267b1a3SMatthew G. Knepley 2924267b1a3SMatthew G. Knepley Input Parameters: 2934267b1a3SMatthew G. Knepley + ctx - the context 2944267b1a3SMatthew G. Knepley . n - the number of points 2954267b1a3SMatthew G. Knepley - points - the coordinates for each point, an array of size n * dim 2964267b1a3SMatthew G. Knepley 2972fe279fdSBarry Smith Level: intermediate 2982fe279fdSBarry Smith 299f6dfbefdSBarry Smith Note: 300f6dfbefdSBarry Smith The coordinate information is copied. 3014267b1a3SMatthew G. Knepley 302420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationSetDim()`, `DMInterpolationEvaluate()`, `DMInterpolationCreate()` 3034267b1a3SMatthew G. Knepley @*/ 304d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationAddPoints(DMInterpolationInfo ctx, PetscInt n, PetscReal points[]) 305d71ae5a4SJacob Faibussowitsch { 306552f7358SJed Brown PetscFunctionBegin; 30708401ef6SPierre Jolivet PetscCheck(ctx->dim >= 0, ctx->comm, PETSC_ERR_ARG_WRONGSTATE, "The spatial dimension has not been set"); 30828b400f6SJacob Faibussowitsch PetscCheck(!ctx->points, ctx->comm, PETSC_ERR_ARG_WRONGSTATE, "Cannot add points multiple times yet"); 309552f7358SJed Brown ctx->nInput = n; 3101aa26658SKarl Rupp 3119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n * ctx->dim, &ctx->points)); 3129566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ctx->points, points, n * ctx->dim)); 3133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 314552f7358SJed Brown } 315552f7358SJed Brown 3164267b1a3SMatthew G. Knepley /*@C 31752aa1562SMatthew G. Knepley DMInterpolationSetUp - Compute spatial indices for point location during interpolation 3184267b1a3SMatthew G. Knepley 319c3339decSBarry Smith Collective 3204267b1a3SMatthew G. Knepley 3214267b1a3SMatthew G. Knepley Input Parameters: 3224267b1a3SMatthew G. Knepley + ctx - the context 323f6dfbefdSBarry Smith . dm - the `DM` for the function space used for interpolation 324f6dfbefdSBarry Smith . redundantPoints - If `PETSC_TRUE`, all processes are passing in the same array of points. Otherwise, points need to be communicated among processes. 325f6dfbefdSBarry Smith - ignoreOutsideDomain - If `PETSC_TRUE`, ignore points outside the domain, otherwise return an error 3264267b1a3SMatthew G. Knepley 3274267b1a3SMatthew G. Knepley Level: intermediate 3284267b1a3SMatthew G. Knepley 329420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 3304267b1a3SMatthew G. Knepley @*/ 331d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationSetUp(DMInterpolationInfo ctx, DM dm, PetscBool redundantPoints, PetscBool ignoreOutsideDomain) 332d71ae5a4SJacob Faibussowitsch { 333552f7358SJed Brown MPI_Comm comm = ctx->comm; 334552f7358SJed Brown PetscScalar *a; 335552f7358SJed Brown PetscInt p, q, i; 336552f7358SJed Brown PetscMPIInt rank, size; 337552f7358SJed Brown Vec pointVec; 3383a93e3b7SToby Isaac PetscSF cellSF; 339552f7358SJed Brown PetscLayout layout; 340552f7358SJed Brown PetscReal *globalPoints; 341cb313848SJed Brown PetscScalar *globalPointsScalar; 342552f7358SJed Brown const PetscInt *ranges; 343552f7358SJed Brown PetscMPIInt *counts, *displs; 3443a93e3b7SToby Isaac const PetscSFNode *foundCells; 3453a93e3b7SToby Isaac const PetscInt *foundPoints; 346552f7358SJed Brown PetscMPIInt *foundProcs, *globalProcs; 3473a93e3b7SToby Isaac PetscInt n, N, numFound; 348552f7358SJed Brown 34919436ca2SJed Brown PetscFunctionBegin; 350064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 35308401ef6SPierre Jolivet PetscCheck(ctx->dim >= 0, comm, PETSC_ERR_ARG_WRONGSTATE, "The spatial dimension has not been set"); 35419436ca2SJed Brown /* Locate points */ 35519436ca2SJed Brown n = ctx->nInput; 356552f7358SJed Brown if (!redundantPoints) { 3579566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 3589566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 3599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, n)); 3609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 3619566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetSize(layout, &N)); 362552f7358SJed Brown /* Communicate all points to all processes */ 3639566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(N * ctx->dim, &globalPoints, size, &counts, size, &displs)); 3649566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 365552f7358SJed Brown for (p = 0; p < size; ++p) { 366552f7358SJed Brown counts[p] = (ranges[p + 1] - ranges[p]) * ctx->dim; 367552f7358SJed Brown displs[p] = ranges[p] * ctx->dim; 368552f7358SJed Brown } 3699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(ctx->points, n * ctx->dim, MPIU_REAL, globalPoints, counts, displs, MPIU_REAL, comm)); 370552f7358SJed Brown } else { 371552f7358SJed Brown N = n; 372552f7358SJed Brown globalPoints = ctx->points; 37338ea73c8SJed Brown counts = displs = NULL; 37438ea73c8SJed Brown layout = NULL; 375552f7358SJed Brown } 376552f7358SJed Brown #if 0 3779566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(N,&foundCells,N,&foundProcs,N,&globalProcs)); 37819436ca2SJed Brown /* foundCells[p] = m->locatePoint(&globalPoints[p*ctx->dim]); */ 379552f7358SJed Brown #else 380cb313848SJed Brown #if defined(PETSC_USE_COMPLEX) 3819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N * ctx->dim, &globalPointsScalar)); 38246b3086cSToby Isaac for (i = 0; i < N * ctx->dim; i++) globalPointsScalar[i] = globalPoints[i]; 383cb313848SJed Brown #else 384cb313848SJed Brown globalPointsScalar = globalPoints; 385cb313848SJed Brown #endif 3869566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, ctx->dim, N * ctx->dim, globalPointsScalar, &pointVec)); 3879566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(N, &foundProcs, N, &globalProcs)); 388ad540459SPierre Jolivet for (p = 0; p < N; ++p) foundProcs[p] = size; 3893a93e3b7SToby Isaac cellSF = NULL; 3909566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dm, pointVec, DM_POINTLOCATION_REMOVE, &cellSF)); 3919566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(cellSF, NULL, &numFound, &foundPoints, &foundCells)); 392552f7358SJed Brown #endif 3933a93e3b7SToby Isaac for (p = 0; p < numFound; ++p) { 3943a93e3b7SToby Isaac if (foundCells[p].index >= 0) foundProcs[foundPoints ? foundPoints[p] : p] = rank; 395552f7358SJed Brown } 396552f7358SJed Brown /* Let the lowest rank process own each point */ 3971c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(foundProcs, globalProcs, N, MPI_INT, MPI_MIN, comm)); 398552f7358SJed Brown ctx->n = 0; 399552f7358SJed Brown for (p = 0; p < N; ++p) { 40052aa1562SMatthew G. Knepley if (globalProcs[p] == size) { 4019371c9d4SSatish Balay PetscCheck(ignoreOutsideDomain, comm, PETSC_ERR_PLIB, "Point %" PetscInt_FMT ": %g %g %g not located in mesh", p, (double)globalPoints[p * ctx->dim + 0], (double)(ctx->dim > 1 ? globalPoints[p * ctx->dim + 1] : 0.0), 4029371c9d4SSatish Balay (double)(ctx->dim > 2 ? globalPoints[p * ctx->dim + 2] : 0.0)); 403f7d195e4SLawrence Mitchell if (rank == 0) ++ctx->n; 40452aa1562SMatthew G. Knepley } else if (globalProcs[p] == rank) ++ctx->n; 405552f7358SJed Brown } 406552f7358SJed Brown /* Create coordinates vector and array of owned cells */ 4079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ctx->n, &ctx->cells)); 4089566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &ctx->coords)); 4099566063dSJacob Faibussowitsch PetscCall(VecSetSizes(ctx->coords, ctx->n * ctx->dim, PETSC_DECIDE)); 4109566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(ctx->coords, ctx->dim)); 4119566063dSJacob Faibussowitsch PetscCall(VecSetType(ctx->coords, VECSTANDARD)); 4129566063dSJacob Faibussowitsch PetscCall(VecGetArray(ctx->coords, &a)); 413552f7358SJed Brown for (p = 0, q = 0, i = 0; p < N; ++p) { 414552f7358SJed Brown if (globalProcs[p] == rank) { 415552f7358SJed Brown PetscInt d; 416552f7358SJed Brown 4171aa26658SKarl Rupp for (d = 0; d < ctx->dim; ++d, ++i) a[i] = globalPoints[p * ctx->dim + d]; 418f317b747SMatthew G. Knepley ctx->cells[q] = foundCells[q].index; 419f317b747SMatthew G. Knepley ++q; 420552f7358SJed Brown } 421dd400576SPatrick Sanan if (globalProcs[p] == size && rank == 0) { 42252aa1562SMatthew G. Knepley PetscInt d; 42352aa1562SMatthew G. Knepley 42452aa1562SMatthew G. Knepley for (d = 0; d < ctx->dim; ++d, ++i) a[i] = 0.; 42552aa1562SMatthew G. Knepley ctx->cells[q] = -1; 42652aa1562SMatthew G. Knepley ++q; 42752aa1562SMatthew G. Knepley } 428552f7358SJed Brown } 4299566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(ctx->coords, &a)); 430552f7358SJed Brown #if 0 4319566063dSJacob Faibussowitsch PetscCall(PetscFree3(foundCells,foundProcs,globalProcs)); 432552f7358SJed Brown #else 4339566063dSJacob Faibussowitsch PetscCall(PetscFree2(foundProcs, globalProcs)); 4349566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&cellSF)); 4359566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 436552f7358SJed Brown #endif 4379566063dSJacob Faibussowitsch if ((void *)globalPointsScalar != (void *)globalPoints) PetscCall(PetscFree(globalPointsScalar)); 4389566063dSJacob Faibussowitsch if (!redundantPoints) PetscCall(PetscFree3(globalPoints, counts, displs)); 4399566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 4403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 441552f7358SJed Brown } 442552f7358SJed Brown 4434267b1a3SMatthew G. Knepley /*@C 444f6dfbefdSBarry Smith DMInterpolationGetCoordinates - Gets a `Vec` with the coordinates of each interpolation point 4454267b1a3SMatthew G. Knepley 446c3339decSBarry Smith Collective 4474267b1a3SMatthew G. Knepley 4484267b1a3SMatthew G. Knepley Input Parameter: 4494267b1a3SMatthew G. Knepley . ctx - the context 4504267b1a3SMatthew G. Knepley 4514267b1a3SMatthew G. Knepley Output Parameter: 4524267b1a3SMatthew G. Knepley . coordinates - the coordinates of interpolation points 4534267b1a3SMatthew G. Knepley 45420f4b53cSBarry Smith Level: intermediate 45520f4b53cSBarry Smith 456f6dfbefdSBarry Smith Note: 457f6dfbefdSBarry Smith The local vector entries correspond to interpolation points lying on this process, according to the associated `DM`. 458f6dfbefdSBarry Smith This is a borrowed vector that the user should not destroy. 4594267b1a3SMatthew G. Knepley 460420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 4614267b1a3SMatthew G. Knepley @*/ 462d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationGetCoordinates(DMInterpolationInfo ctx, Vec *coordinates) 463d71ae5a4SJacob Faibussowitsch { 464552f7358SJed Brown PetscFunctionBegin; 4654f572ea9SToby Isaac PetscAssertPointer(coordinates, 2); 46628b400f6SJacob Faibussowitsch PetscCheck(ctx->coords, ctx->comm, PETSC_ERR_ARG_WRONGSTATE, "The interpolation context has not been setup."); 467552f7358SJed Brown *coordinates = ctx->coords; 4683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 469552f7358SJed Brown } 470552f7358SJed Brown 4714267b1a3SMatthew G. Knepley /*@C 472f6dfbefdSBarry Smith DMInterpolationGetVector - Gets a `Vec` which can hold all the interpolated field values 4734267b1a3SMatthew G. Knepley 474c3339decSBarry Smith Collective 4754267b1a3SMatthew G. Knepley 4764267b1a3SMatthew G. Knepley Input Parameter: 4774267b1a3SMatthew G. Knepley . ctx - the context 4784267b1a3SMatthew G. Knepley 4794267b1a3SMatthew G. Knepley Output Parameter: 4804267b1a3SMatthew G. Knepley . v - a vector capable of holding the interpolated field values 4814267b1a3SMatthew G. Knepley 4822fe279fdSBarry Smith Level: intermediate 4832fe279fdSBarry Smith 484f6dfbefdSBarry Smith Note: 485f6dfbefdSBarry Smith This vector should be returned using `DMInterpolationRestoreVector()`. 4864267b1a3SMatthew G. Knepley 487420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationRestoreVector()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 4884267b1a3SMatthew G. Knepley @*/ 489d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationGetVector(DMInterpolationInfo ctx, Vec *v) 490d71ae5a4SJacob Faibussowitsch { 491552f7358SJed Brown PetscFunctionBegin; 4924f572ea9SToby Isaac PetscAssertPointer(v, 2); 49328b400f6SJacob Faibussowitsch PetscCheck(ctx->coords, ctx->comm, PETSC_ERR_ARG_WRONGSTATE, "The interpolation context has not been setup."); 4949566063dSJacob Faibussowitsch PetscCall(VecCreate(ctx->comm, v)); 4959566063dSJacob Faibussowitsch PetscCall(VecSetSizes(*v, ctx->n * ctx->dof, PETSC_DECIDE)); 4969566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(*v, ctx->dof)); 4979566063dSJacob Faibussowitsch PetscCall(VecSetType(*v, VECSTANDARD)); 4983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 499552f7358SJed Brown } 500552f7358SJed Brown 5014267b1a3SMatthew G. Knepley /*@C 502f6dfbefdSBarry Smith DMInterpolationRestoreVector - Returns a `Vec` which can hold all the interpolated field values 5034267b1a3SMatthew G. Knepley 504c3339decSBarry Smith Collective 5054267b1a3SMatthew G. Knepley 5064267b1a3SMatthew G. Knepley Input Parameters: 5074267b1a3SMatthew G. Knepley + ctx - the context 5084267b1a3SMatthew G. Knepley - v - a vector capable of holding the interpolated field values 5094267b1a3SMatthew G. Knepley 5104267b1a3SMatthew G. Knepley Level: intermediate 5114267b1a3SMatthew G. Knepley 512420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationGetVector()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 5134267b1a3SMatthew G. Knepley @*/ 514d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationRestoreVector(DMInterpolationInfo ctx, Vec *v) 515d71ae5a4SJacob Faibussowitsch { 516552f7358SJed Brown PetscFunctionBegin; 5174f572ea9SToby Isaac PetscAssertPointer(v, 2); 51828b400f6SJacob Faibussowitsch PetscCheck(ctx->coords, ctx->comm, PETSC_ERR_ARG_WRONGSTATE, "The interpolation context has not been setup."); 5199566063dSJacob Faibussowitsch PetscCall(VecDestroy(v)); 5203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 521552f7358SJed Brown } 522552f7358SJed Brown 523ab72731fSMatthew G. Knepley static inline PetscErrorCode DMInterpolate_Segment_Private(DMInterpolationInfo ctx, DM dm, PetscInt p, Vec xLocal, Vec v) 524d71ae5a4SJacob Faibussowitsch { 525ab72731fSMatthew G. Knepley const PetscInt c = ctx->cells[p]; 526cfe5744fSMatthew G. Knepley const PetscInt dof = ctx->dof; 527ab72731fSMatthew G. Knepley PetscScalar *x = NULL; 528cfe5744fSMatthew G. Knepley const PetscScalar *coords; 529cfe5744fSMatthew G. Knepley PetscScalar *a; 530ab72731fSMatthew G. Knepley PetscReal v0, J, invJ, detJ, xir[1]; 531ab72731fSMatthew G. Knepley PetscInt xSize, comp; 532cfe5744fSMatthew G. Knepley 533cfe5744fSMatthew G. Knepley PetscFunctionBegin; 5349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 5359566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &a)); 5369566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, &v0, &J, &invJ, &detJ)); 537cfe5744fSMatthew G. Knepley PetscCheck(detJ > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT, (double)detJ, c); 538cfe5744fSMatthew G. Knepley xir[0] = invJ * PetscRealPart(coords[p] - v0); 5399566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, xLocal, c, &xSize, &x)); 540cfe5744fSMatthew G. Knepley if (2 * dof == xSize) { 541cfe5744fSMatthew G. Knepley for (comp = 0; comp < dof; ++comp) a[p * dof + comp] = x[0 * dof + comp] * (1 - xir[0]) + x[1 * dof + comp] * xir[0]; 542cfe5744fSMatthew G. Knepley } else if (dof == xSize) { 543cfe5744fSMatthew G. Knepley for (comp = 0; comp < dof; ++comp) a[p * dof + comp] = x[0 * dof + comp]; 544cfe5744fSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Input closure size %" PetscInt_FMT " must be either %" PetscInt_FMT " or %" PetscInt_FMT, xSize, 2 * dof, dof); 5459566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, xLocal, c, &xSize, &x)); 5469566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &a)); 5479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 5483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 549cfe5744fSMatthew G. Knepley } 550cfe5744fSMatthew G. Knepley 551ab72731fSMatthew G. Knepley static inline PetscErrorCode DMInterpolate_Triangle_Private(DMInterpolationInfo ctx, DM dm, PetscInt p, Vec xLocal, Vec v) 552d71ae5a4SJacob Faibussowitsch { 553ab72731fSMatthew G. Knepley const PetscInt c = ctx->cells[p]; 554ab72731fSMatthew G. Knepley PetscScalar *x = NULL; 55556044e6dSMatthew G. Knepley const PetscScalar *coords; 55656044e6dSMatthew G. Knepley PetscScalar *a; 557ab72731fSMatthew G. Knepley PetscReal *v0, *J, *invJ, detJ; 558ab72731fSMatthew G. Knepley PetscReal xi[4]; 559552f7358SJed Brown 560552f7358SJed Brown PetscFunctionBegin; 5619566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(ctx->dim, &v0, ctx->dim * ctx->dim, &J, ctx->dim * ctx->dim, &invJ)); 5629566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 5639566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &a)); 5649566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ)); 56563a3b9bcSJacob Faibussowitsch PetscCheck(detJ > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT, (double)detJ, c); 5669566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, xLocal, c, NULL, &x)); 567ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) a[p * ctx->dof + comp] = x[0 * ctx->dof + comp]; 568ab72731fSMatthew G. Knepley for (PetscInt d = 0; d < ctx->dim; ++d) { 569552f7358SJed Brown xi[d] = 0.0; 570ab72731fSMatthew G. Knepley for (PetscInt f = 0; f < ctx->dim; ++f) xi[d] += invJ[d * ctx->dim + f] * 0.5 * PetscRealPart(coords[p * ctx->dim + f] - v0[f]); 571ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) a[p * ctx->dof + comp] += PetscRealPart(x[(d + 1) * ctx->dof + comp] - x[0 * ctx->dof + comp]) * xi[d]; 572552f7358SJed Brown } 5739566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, xLocal, c, NULL, &x)); 5749566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &a)); 5759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 5769566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 5773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 578552f7358SJed Brown } 579552f7358SJed Brown 580ab72731fSMatthew G. Knepley static inline PetscErrorCode DMInterpolate_Tetrahedron_Private(DMInterpolationInfo ctx, DM dm, PetscInt p, Vec xLocal, Vec v) 581d71ae5a4SJacob Faibussowitsch { 582ab72731fSMatthew G. Knepley const PetscInt c = ctx->cells[p]; 583ab72731fSMatthew G. Knepley const PetscInt order[3] = {2, 1, 3}; 584ab72731fSMatthew G. Knepley PetscScalar *x = NULL; 5857a1931ceSMatthew G. Knepley PetscReal *v0, *J, *invJ, detJ; 58656044e6dSMatthew G. Knepley const PetscScalar *coords; 58756044e6dSMatthew G. Knepley PetscScalar *a; 588ab72731fSMatthew G. Knepley PetscReal xi[4]; 5897a1931ceSMatthew G. Knepley 5907a1931ceSMatthew G. Knepley PetscFunctionBegin; 5919566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(ctx->dim, &v0, ctx->dim * ctx->dim, &J, ctx->dim * ctx->dim, &invJ)); 5929566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 5939566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &a)); 5949566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ)); 59563a3b9bcSJacob Faibussowitsch PetscCheck(detJ > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT, (double)detJ, c); 5969566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, xLocal, c, NULL, &x)); 597ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) a[p * ctx->dof + comp] = x[0 * ctx->dof + comp]; 598ab72731fSMatthew G. Knepley for (PetscInt d = 0; d < ctx->dim; ++d) { 5997a1931ceSMatthew G. Knepley xi[d] = 0.0; 600ab72731fSMatthew G. Knepley for (PetscInt f = 0; f < ctx->dim; ++f) xi[d] += invJ[d * ctx->dim + f] * 0.5 * PetscRealPart(coords[p * ctx->dim + f] - v0[f]); 601ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) a[p * ctx->dof + comp] += PetscRealPart(x[order[d] * ctx->dof + comp] - x[0 * ctx->dof + comp]) * xi[d]; 6027a1931ceSMatthew G. Knepley } 6039566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, xLocal, c, NULL, &x)); 6049566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &a)); 6059566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 6069566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 6073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6087a1931ceSMatthew G. Knepley } 6097a1931ceSMatthew G. Knepley 610d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode QuadMap_Private(SNES snes, Vec Xref, Vec Xreal, void *ctx) 611d71ae5a4SJacob Faibussowitsch { 612552f7358SJed Brown const PetscScalar *vertices = (const PetscScalar *)ctx; 613552f7358SJed Brown const PetscScalar x0 = vertices[0]; 614552f7358SJed Brown const PetscScalar y0 = vertices[1]; 615552f7358SJed Brown const PetscScalar x1 = vertices[2]; 616552f7358SJed Brown const PetscScalar y1 = vertices[3]; 617552f7358SJed Brown const PetscScalar x2 = vertices[4]; 618552f7358SJed Brown const PetscScalar y2 = vertices[5]; 619552f7358SJed Brown const PetscScalar x3 = vertices[6]; 620552f7358SJed Brown const PetscScalar y3 = vertices[7]; 621552f7358SJed Brown const PetscScalar f_1 = x1 - x0; 622552f7358SJed Brown const PetscScalar g_1 = y1 - y0; 623552f7358SJed Brown const PetscScalar f_3 = x3 - x0; 624552f7358SJed Brown const PetscScalar g_3 = y3 - y0; 625552f7358SJed Brown const PetscScalar f_01 = x2 - x1 - x3 + x0; 626552f7358SJed Brown const PetscScalar g_01 = y2 - y1 - y3 + y0; 62756044e6dSMatthew G. Knepley const PetscScalar *ref; 62856044e6dSMatthew G. Knepley PetscScalar *real; 629552f7358SJed Brown 630552f7358SJed Brown PetscFunctionBegin; 6319566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Xref, &ref)); 6329566063dSJacob Faibussowitsch PetscCall(VecGetArray(Xreal, &real)); 633552f7358SJed Brown { 634552f7358SJed Brown const PetscScalar p0 = ref[0]; 635552f7358SJed Brown const PetscScalar p1 = ref[1]; 636552f7358SJed Brown 637552f7358SJed Brown real[0] = x0 + f_1 * p0 + f_3 * p1 + f_01 * p0 * p1; 638552f7358SJed Brown real[1] = y0 + g_1 * p0 + g_3 * p1 + g_01 * p0 * p1; 639552f7358SJed Brown } 6409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(28)); 6419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Xref, &ref)); 6429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Xreal, &real)); 6433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 644552f7358SJed Brown } 645552f7358SJed Brown 646af0996ceSBarry Smith #include <petsc/private/dmimpl.h> 647d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode QuadJacobian_Private(SNES snes, Vec Xref, Mat J, Mat M, void *ctx) 648d71ae5a4SJacob Faibussowitsch { 649552f7358SJed Brown const PetscScalar *vertices = (const PetscScalar *)ctx; 650552f7358SJed Brown const PetscScalar x0 = vertices[0]; 651552f7358SJed Brown const PetscScalar y0 = vertices[1]; 652552f7358SJed Brown const PetscScalar x1 = vertices[2]; 653552f7358SJed Brown const PetscScalar y1 = vertices[3]; 654552f7358SJed Brown const PetscScalar x2 = vertices[4]; 655552f7358SJed Brown const PetscScalar y2 = vertices[5]; 656552f7358SJed Brown const PetscScalar x3 = vertices[6]; 657552f7358SJed Brown const PetscScalar y3 = vertices[7]; 658552f7358SJed Brown const PetscScalar f_01 = x2 - x1 - x3 + x0; 659552f7358SJed Brown const PetscScalar g_01 = y2 - y1 - y3 + y0; 66056044e6dSMatthew G. Knepley const PetscScalar *ref; 661552f7358SJed Brown 662552f7358SJed Brown PetscFunctionBegin; 6639566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Xref, &ref)); 664552f7358SJed Brown { 665552f7358SJed Brown const PetscScalar x = ref[0]; 666552f7358SJed Brown const PetscScalar y = ref[1]; 667552f7358SJed Brown const PetscInt rows[2] = {0, 1}; 668da80777bSKarl Rupp PetscScalar values[4]; 669da80777bSKarl Rupp 6709371c9d4SSatish Balay values[0] = (x1 - x0 + f_01 * y) * 0.5; 6719371c9d4SSatish Balay values[1] = (x3 - x0 + f_01 * x) * 0.5; 6729371c9d4SSatish Balay values[2] = (y1 - y0 + g_01 * y) * 0.5; 6739371c9d4SSatish Balay values[3] = (y3 - y0 + g_01 * x) * 0.5; 6749566063dSJacob Faibussowitsch PetscCall(MatSetValues(J, 2, rows, 2, rows, values, INSERT_VALUES)); 675552f7358SJed Brown } 6769566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(30)); 6779566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Xref, &ref)); 6789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(J, MAT_FINAL_ASSEMBLY)); 6799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(J, MAT_FINAL_ASSEMBLY)); 6803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 681552f7358SJed Brown } 682552f7358SJed Brown 683ab72731fSMatthew G. Knepley static inline PetscErrorCode DMInterpolate_Quad_Private(DMInterpolationInfo ctx, DM dm, PetscInt p, Vec xLocal, Vec v) 684d71ae5a4SJacob Faibussowitsch { 685ab72731fSMatthew G. Knepley const PetscInt c = ctx->cells[p]; 686de73a395SMatthew G. Knepley PetscFE fem = NULL; 687ab72731fSMatthew G. Knepley DM dmCoord; 688552f7358SJed Brown SNES snes; 689552f7358SJed Brown KSP ksp; 690552f7358SJed Brown PC pc; 691552f7358SJed Brown Vec coordsLocal, r, ref, real; 692552f7358SJed Brown Mat J; 693716009bfSMatthew G. Knepley PetscTabulation T = NULL; 69456044e6dSMatthew G. Knepley const PetscScalar *coords; 69556044e6dSMatthew G. Knepley PetscScalar *a; 696716009bfSMatthew G. Knepley PetscReal xir[2] = {0., 0.}; 697ab72731fSMatthew G. Knepley PetscInt Nf; 6985509d985SMatthew G. Knepley const PetscInt dof = ctx->dof; 699ab72731fSMatthew G. Knepley PetscScalar *x = NULL, *vertices = NULL; 700ab72731fSMatthew G. Knepley PetscScalar *xi; 701ab72731fSMatthew G. Knepley PetscInt coordSize, xSize; 702552f7358SJed Brown 703552f7358SJed Brown PetscFunctionBegin; 7049566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 705716009bfSMatthew G. Knepley if (Nf) { 706cfe5744fSMatthew G. Knepley PetscObject obj; 707cfe5744fSMatthew G. Knepley PetscClassId id; 708cfe5744fSMatthew G. Knepley 7099566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, 0, NULL, &obj)); 7109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 7119371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 7129371c9d4SSatish Balay fem = (PetscFE)obj; 7139371c9d4SSatish Balay PetscCall(PetscFECreateTabulation(fem, 1, 1, xir, 0, &T)); 7149371c9d4SSatish Balay } 715716009bfSMatthew G. Knepley } 7169566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordsLocal)); 7179566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &dmCoord)); 7189566063dSJacob Faibussowitsch PetscCall(SNESCreate(PETSC_COMM_SELF, &snes)); 7199566063dSJacob Faibussowitsch PetscCall(SNESSetOptionsPrefix(snes, "quad_interp_")); 7209566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &r)); 7219566063dSJacob Faibussowitsch PetscCall(VecSetSizes(r, 2, 2)); 7229566063dSJacob Faibussowitsch PetscCall(VecSetType(r, dm->vectype)); 7239566063dSJacob Faibussowitsch PetscCall(VecDuplicate(r, &ref)); 7249566063dSJacob Faibussowitsch PetscCall(VecDuplicate(r, &real)); 7259566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &J)); 7269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(J, 2, 2, 2, 2)); 7279566063dSJacob Faibussowitsch PetscCall(MatSetType(J, MATSEQDENSE)); 7289566063dSJacob Faibussowitsch PetscCall(MatSetUp(J)); 7299566063dSJacob Faibussowitsch PetscCall(SNESSetFunction(snes, r, QuadMap_Private, NULL)); 7309566063dSJacob Faibussowitsch PetscCall(SNESSetJacobian(snes, J, J, QuadJacobian_Private, NULL)); 7319566063dSJacob Faibussowitsch PetscCall(SNESGetKSP(snes, &ksp)); 7329566063dSJacob Faibussowitsch PetscCall(KSPGetPC(ksp, &pc)); 7339566063dSJacob Faibussowitsch PetscCall(PCSetType(pc, PCLU)); 7349566063dSJacob Faibussowitsch PetscCall(SNESSetFromOptions(snes)); 735552f7358SJed Brown 7369566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 7379566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &a)); 7389566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmCoord, NULL, coordsLocal, c, &coordSize, &vertices)); 73963a3b9bcSJacob Faibussowitsch PetscCheck(4 * 2 == coordSize, ctx->comm, PETSC_ERR_ARG_SIZ, "Invalid closure size %" PetscInt_FMT " should be %d", coordSize, 4 * 2); 7409566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, xLocal, c, &xSize, &x)); 7419566063dSJacob Faibussowitsch PetscCall(SNESSetFunction(snes, NULL, NULL, vertices)); 7429566063dSJacob Faibussowitsch PetscCall(SNESSetJacobian(snes, NULL, NULL, NULL, vertices)); 7439566063dSJacob Faibussowitsch PetscCall(VecGetArray(real, &xi)); 744552f7358SJed Brown xi[0] = coords[p * ctx->dim + 0]; 745552f7358SJed Brown xi[1] = coords[p * ctx->dim + 1]; 7469566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(real, &xi)); 7479566063dSJacob Faibussowitsch PetscCall(SNESSolve(snes, real, ref)); 7489566063dSJacob Faibussowitsch PetscCall(VecGetArray(ref, &xi)); 749cb313848SJed Brown xir[0] = PetscRealPart(xi[0]); 750cb313848SJed Brown xir[1] = PetscRealPart(xi[1]); 751cfe5744fSMatthew G. Knepley if (4 * dof == xSize) { 752ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < dof; ++comp) a[p * dof + comp] = x[0 * dof + comp] * (1 - xir[0]) * (1 - xir[1]) + x[1 * dof + comp] * xir[0] * (1 - xir[1]) + x[2 * dof + comp] * xir[0] * xir[1] + x[3 * dof + comp] * (1 - xir[0]) * xir[1]; 753cfe5744fSMatthew G. Knepley } else if (dof == xSize) { 754ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < dof; ++comp) a[p * dof + comp] = x[0 * dof + comp]; 755cfe5744fSMatthew G. Knepley } else { 7562c71b3e2SJacob Faibussowitsch PetscCheck(fem, ctx->comm, PETSC_ERR_ARG_WRONG, "Cannot have a higher order interpolant if the discretization is not PetscFE"); 7579371c9d4SSatish Balay xir[0] = 2.0 * xir[0] - 1.0; 7589371c9d4SSatish Balay xir[1] = 2.0 * xir[1] - 1.0; 7599566063dSJacob Faibussowitsch PetscCall(PetscFEComputeTabulation(fem, 1, xir, 0, T)); 760ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < dof; ++comp) { 7615509d985SMatthew G. Knepley a[p * dof + comp] = 0.0; 762ab72731fSMatthew G. Knepley for (PetscInt d = 0; d < xSize / dof; ++d) a[p * dof + comp] += x[d * dof + comp] * T->T[0][d * dof + comp]; 7635509d985SMatthew G. Knepley } 7645509d985SMatthew G. Knepley } 7659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(ref, &xi)); 7669566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmCoord, NULL, coordsLocal, c, &coordSize, &vertices)); 7679566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, xLocal, c, &xSize, &x)); 7689566063dSJacob Faibussowitsch PetscCall(PetscTabulationDestroy(&T)); 7699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &a)); 7709566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 771552f7358SJed Brown 7729566063dSJacob Faibussowitsch PetscCall(SNESDestroy(&snes)); 7739566063dSJacob Faibussowitsch PetscCall(VecDestroy(&r)); 7749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ref)); 7759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&real)); 7769566063dSJacob Faibussowitsch PetscCall(MatDestroy(&J)); 7773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 778552f7358SJed Brown } 779552f7358SJed Brown 780d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode HexMap_Private(SNES snes, Vec Xref, Vec Xreal, void *ctx) 781d71ae5a4SJacob Faibussowitsch { 782552f7358SJed Brown const PetscScalar *vertices = (const PetscScalar *)ctx; 783552f7358SJed Brown const PetscScalar x0 = vertices[0]; 784552f7358SJed Brown const PetscScalar y0 = vertices[1]; 785552f7358SJed Brown const PetscScalar z0 = vertices[2]; 7867a1931ceSMatthew G. Knepley const PetscScalar x1 = vertices[9]; 7877a1931ceSMatthew G. Knepley const PetscScalar y1 = vertices[10]; 7887a1931ceSMatthew G. Knepley const PetscScalar z1 = vertices[11]; 789552f7358SJed Brown const PetscScalar x2 = vertices[6]; 790552f7358SJed Brown const PetscScalar y2 = vertices[7]; 791552f7358SJed Brown const PetscScalar z2 = vertices[8]; 7927a1931ceSMatthew G. Knepley const PetscScalar x3 = vertices[3]; 7937a1931ceSMatthew G. Knepley const PetscScalar y3 = vertices[4]; 7947a1931ceSMatthew G. Knepley const PetscScalar z3 = vertices[5]; 795552f7358SJed Brown const PetscScalar x4 = vertices[12]; 796552f7358SJed Brown const PetscScalar y4 = vertices[13]; 797552f7358SJed Brown const PetscScalar z4 = vertices[14]; 798552f7358SJed Brown const PetscScalar x5 = vertices[15]; 799552f7358SJed Brown const PetscScalar y5 = vertices[16]; 800552f7358SJed Brown const PetscScalar z5 = vertices[17]; 801552f7358SJed Brown const PetscScalar x6 = vertices[18]; 802552f7358SJed Brown const PetscScalar y6 = vertices[19]; 803552f7358SJed Brown const PetscScalar z6 = vertices[20]; 804552f7358SJed Brown const PetscScalar x7 = vertices[21]; 805552f7358SJed Brown const PetscScalar y7 = vertices[22]; 806552f7358SJed Brown const PetscScalar z7 = vertices[23]; 807552f7358SJed Brown const PetscScalar f_1 = x1 - x0; 808552f7358SJed Brown const PetscScalar g_1 = y1 - y0; 809552f7358SJed Brown const PetscScalar h_1 = z1 - z0; 810552f7358SJed Brown const PetscScalar f_3 = x3 - x0; 811552f7358SJed Brown const PetscScalar g_3 = y3 - y0; 812552f7358SJed Brown const PetscScalar h_3 = z3 - z0; 813552f7358SJed Brown const PetscScalar f_4 = x4 - x0; 814552f7358SJed Brown const PetscScalar g_4 = y4 - y0; 815552f7358SJed Brown const PetscScalar h_4 = z4 - z0; 816552f7358SJed Brown const PetscScalar f_01 = x2 - x1 - x3 + x0; 817552f7358SJed Brown const PetscScalar g_01 = y2 - y1 - y3 + y0; 818552f7358SJed Brown const PetscScalar h_01 = z2 - z1 - z3 + z0; 819552f7358SJed Brown const PetscScalar f_12 = x7 - x3 - x4 + x0; 820552f7358SJed Brown const PetscScalar g_12 = y7 - y3 - y4 + y0; 821552f7358SJed Brown const PetscScalar h_12 = z7 - z3 - z4 + z0; 822552f7358SJed Brown const PetscScalar f_02 = x5 - x1 - x4 + x0; 823552f7358SJed Brown const PetscScalar g_02 = y5 - y1 - y4 + y0; 824552f7358SJed Brown const PetscScalar h_02 = z5 - z1 - z4 + z0; 825552f7358SJed Brown const PetscScalar f_012 = x6 - x0 + x1 - x2 + x3 + x4 - x5 - x7; 826552f7358SJed Brown const PetscScalar g_012 = y6 - y0 + y1 - y2 + y3 + y4 - y5 - y7; 827552f7358SJed Brown const PetscScalar h_012 = z6 - z0 + z1 - z2 + z3 + z4 - z5 - z7; 82856044e6dSMatthew G. Knepley const PetscScalar *ref; 82956044e6dSMatthew G. Knepley PetscScalar *real; 830552f7358SJed Brown 831552f7358SJed Brown PetscFunctionBegin; 8329566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Xref, &ref)); 8339566063dSJacob Faibussowitsch PetscCall(VecGetArray(Xreal, &real)); 834552f7358SJed Brown { 835552f7358SJed Brown const PetscScalar p0 = ref[0]; 836552f7358SJed Brown const PetscScalar p1 = ref[1]; 837552f7358SJed Brown const PetscScalar p2 = ref[2]; 838552f7358SJed Brown 839552f7358SJed Brown real[0] = x0 + f_1 * p0 + f_3 * p1 + f_4 * p2 + f_01 * p0 * p1 + f_12 * p1 * p2 + f_02 * p0 * p2 + f_012 * p0 * p1 * p2; 840552f7358SJed Brown real[1] = y0 + g_1 * p0 + g_3 * p1 + g_4 * p2 + g_01 * p0 * p1 + g_01 * p0 * p1 + g_12 * p1 * p2 + g_02 * p0 * p2 + g_012 * p0 * p1 * p2; 841552f7358SJed Brown real[2] = z0 + h_1 * p0 + h_3 * p1 + h_4 * p2 + h_01 * p0 * p1 + h_01 * p0 * p1 + h_12 * p1 * p2 + h_02 * p0 * p2 + h_012 * p0 * p1 * p2; 842552f7358SJed Brown } 8439566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(114)); 8449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Xref, &ref)); 8459566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Xreal, &real)); 8463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 847552f7358SJed Brown } 848552f7358SJed Brown 849d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode HexJacobian_Private(SNES snes, Vec Xref, Mat J, Mat M, void *ctx) 850d71ae5a4SJacob Faibussowitsch { 851552f7358SJed Brown const PetscScalar *vertices = (const PetscScalar *)ctx; 852552f7358SJed Brown const PetscScalar x0 = vertices[0]; 853552f7358SJed Brown const PetscScalar y0 = vertices[1]; 854552f7358SJed Brown const PetscScalar z0 = vertices[2]; 8557a1931ceSMatthew G. Knepley const PetscScalar x1 = vertices[9]; 8567a1931ceSMatthew G. Knepley const PetscScalar y1 = vertices[10]; 8577a1931ceSMatthew G. Knepley const PetscScalar z1 = vertices[11]; 858552f7358SJed Brown const PetscScalar x2 = vertices[6]; 859552f7358SJed Brown const PetscScalar y2 = vertices[7]; 860552f7358SJed Brown const PetscScalar z2 = vertices[8]; 8617a1931ceSMatthew G. Knepley const PetscScalar x3 = vertices[3]; 8627a1931ceSMatthew G. Knepley const PetscScalar y3 = vertices[4]; 8637a1931ceSMatthew G. Knepley const PetscScalar z3 = vertices[5]; 864552f7358SJed Brown const PetscScalar x4 = vertices[12]; 865552f7358SJed Brown const PetscScalar y4 = vertices[13]; 866552f7358SJed Brown const PetscScalar z4 = vertices[14]; 867552f7358SJed Brown const PetscScalar x5 = vertices[15]; 868552f7358SJed Brown const PetscScalar y5 = vertices[16]; 869552f7358SJed Brown const PetscScalar z5 = vertices[17]; 870552f7358SJed Brown const PetscScalar x6 = vertices[18]; 871552f7358SJed Brown const PetscScalar y6 = vertices[19]; 872552f7358SJed Brown const PetscScalar z6 = vertices[20]; 873552f7358SJed Brown const PetscScalar x7 = vertices[21]; 874552f7358SJed Brown const PetscScalar y7 = vertices[22]; 875552f7358SJed Brown const PetscScalar z7 = vertices[23]; 876552f7358SJed Brown const PetscScalar f_xy = x2 - x1 - x3 + x0; 877552f7358SJed Brown const PetscScalar g_xy = y2 - y1 - y3 + y0; 878552f7358SJed Brown const PetscScalar h_xy = z2 - z1 - z3 + z0; 879552f7358SJed Brown const PetscScalar f_yz = x7 - x3 - x4 + x0; 880552f7358SJed Brown const PetscScalar g_yz = y7 - y3 - y4 + y0; 881552f7358SJed Brown const PetscScalar h_yz = z7 - z3 - z4 + z0; 882552f7358SJed Brown const PetscScalar f_xz = x5 - x1 - x4 + x0; 883552f7358SJed Brown const PetscScalar g_xz = y5 - y1 - y4 + y0; 884552f7358SJed Brown const PetscScalar h_xz = z5 - z1 - z4 + z0; 885552f7358SJed Brown const PetscScalar f_xyz = x6 - x0 + x1 - x2 + x3 + x4 - x5 - x7; 886552f7358SJed Brown const PetscScalar g_xyz = y6 - y0 + y1 - y2 + y3 + y4 - y5 - y7; 887552f7358SJed Brown const PetscScalar h_xyz = z6 - z0 + z1 - z2 + z3 + z4 - z5 - z7; 88856044e6dSMatthew G. Knepley const PetscScalar *ref; 889552f7358SJed Brown 890552f7358SJed Brown PetscFunctionBegin; 8919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Xref, &ref)); 892552f7358SJed Brown { 893552f7358SJed Brown const PetscScalar x = ref[0]; 894552f7358SJed Brown const PetscScalar y = ref[1]; 895552f7358SJed Brown const PetscScalar z = ref[2]; 896552f7358SJed Brown const PetscInt rows[3] = {0, 1, 2}; 897da80777bSKarl Rupp PetscScalar values[9]; 898da80777bSKarl Rupp 899da80777bSKarl Rupp values[0] = (x1 - x0 + f_xy * y + f_xz * z + f_xyz * y * z) / 2.0; 900da80777bSKarl Rupp values[1] = (x3 - x0 + f_xy * x + f_yz * z + f_xyz * x * z) / 2.0; 901da80777bSKarl Rupp values[2] = (x4 - x0 + f_yz * y + f_xz * x + f_xyz * x * y) / 2.0; 902da80777bSKarl Rupp values[3] = (y1 - y0 + g_xy * y + g_xz * z + g_xyz * y * z) / 2.0; 903da80777bSKarl Rupp values[4] = (y3 - y0 + g_xy * x + g_yz * z + g_xyz * x * z) / 2.0; 904da80777bSKarl Rupp values[5] = (y4 - y0 + g_yz * y + g_xz * x + g_xyz * x * y) / 2.0; 905da80777bSKarl Rupp values[6] = (z1 - z0 + h_xy * y + h_xz * z + h_xyz * y * z) / 2.0; 906da80777bSKarl Rupp values[7] = (z3 - z0 + h_xy * x + h_yz * z + h_xyz * x * z) / 2.0; 907da80777bSKarl Rupp values[8] = (z4 - z0 + h_yz * y + h_xz * x + h_xyz * x * y) / 2.0; 9081aa26658SKarl Rupp 9099566063dSJacob Faibussowitsch PetscCall(MatSetValues(J, 3, rows, 3, rows, values, INSERT_VALUES)); 910552f7358SJed Brown } 9119566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(152)); 9129566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Xref, &ref)); 9139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(J, MAT_FINAL_ASSEMBLY)); 9149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(J, MAT_FINAL_ASSEMBLY)); 9153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 916552f7358SJed Brown } 917552f7358SJed Brown 918ab72731fSMatthew G. Knepley static inline PetscErrorCode DMInterpolate_Hex_Private(DMInterpolationInfo ctx, DM dm, PetscInt p, Vec xLocal, Vec v) 919d71ae5a4SJacob Faibussowitsch { 920ab72731fSMatthew G. Knepley const PetscInt c = ctx->cells[p]; 921fafc0619SMatthew G Knepley DM dmCoord; 922552f7358SJed Brown SNES snes; 923552f7358SJed Brown KSP ksp; 924552f7358SJed Brown PC pc; 925552f7358SJed Brown Vec coordsLocal, r, ref, real; 926552f7358SJed Brown Mat J; 92756044e6dSMatthew G. Knepley const PetscScalar *coords; 92856044e6dSMatthew G. Knepley PetscScalar *a; 929ab72731fSMatthew G. Knepley PetscScalar *x = NULL, *vertices = NULL; 930ab72731fSMatthew G. Knepley PetscScalar *xi; 931ab72731fSMatthew G. Knepley PetscReal xir[3]; 932ab72731fSMatthew G. Knepley PetscInt coordSize, xSize; 933552f7358SJed Brown 934552f7358SJed Brown PetscFunctionBegin; 9359566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordsLocal)); 9369566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &dmCoord)); 9379566063dSJacob Faibussowitsch PetscCall(SNESCreate(PETSC_COMM_SELF, &snes)); 9389566063dSJacob Faibussowitsch PetscCall(SNESSetOptionsPrefix(snes, "hex_interp_")); 9399566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &r)); 9409566063dSJacob Faibussowitsch PetscCall(VecSetSizes(r, 3, 3)); 9419566063dSJacob Faibussowitsch PetscCall(VecSetType(r, dm->vectype)); 9429566063dSJacob Faibussowitsch PetscCall(VecDuplicate(r, &ref)); 9439566063dSJacob Faibussowitsch PetscCall(VecDuplicate(r, &real)); 9449566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &J)); 9459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(J, 3, 3, 3, 3)); 9469566063dSJacob Faibussowitsch PetscCall(MatSetType(J, MATSEQDENSE)); 9479566063dSJacob Faibussowitsch PetscCall(MatSetUp(J)); 9489566063dSJacob Faibussowitsch PetscCall(SNESSetFunction(snes, r, HexMap_Private, NULL)); 9499566063dSJacob Faibussowitsch PetscCall(SNESSetJacobian(snes, J, J, HexJacobian_Private, NULL)); 9509566063dSJacob Faibussowitsch PetscCall(SNESGetKSP(snes, &ksp)); 9519566063dSJacob Faibussowitsch PetscCall(KSPGetPC(ksp, &pc)); 9529566063dSJacob Faibussowitsch PetscCall(PCSetType(pc, PCLU)); 9539566063dSJacob Faibussowitsch PetscCall(SNESSetFromOptions(snes)); 954552f7358SJed Brown 9559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 9569566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &a)); 9579566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmCoord, NULL, coordsLocal, c, &coordSize, &vertices)); 958cfe5744fSMatthew G. Knepley PetscCheck(8 * 3 == coordSize, ctx->comm, PETSC_ERR_ARG_SIZ, "Invalid coordinate closure size %" PetscInt_FMT " should be %d", coordSize, 8 * 3); 9599566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, xLocal, c, &xSize, &x)); 960cfe5744fSMatthew G. Knepley PetscCheck((8 * ctx->dof == xSize) || (ctx->dof == xSize), ctx->comm, PETSC_ERR_ARG_SIZ, "Invalid input closure size %" PetscInt_FMT " should be %" PetscInt_FMT " or %" PetscInt_FMT, xSize, 8 * ctx->dof, ctx->dof); 9619566063dSJacob Faibussowitsch PetscCall(SNESSetFunction(snes, NULL, NULL, vertices)); 9629566063dSJacob Faibussowitsch PetscCall(SNESSetJacobian(snes, NULL, NULL, NULL, vertices)); 9639566063dSJacob Faibussowitsch PetscCall(VecGetArray(real, &xi)); 964552f7358SJed Brown xi[0] = coords[p * ctx->dim + 0]; 965552f7358SJed Brown xi[1] = coords[p * ctx->dim + 1]; 966552f7358SJed Brown xi[2] = coords[p * ctx->dim + 2]; 9679566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(real, &xi)); 9689566063dSJacob Faibussowitsch PetscCall(SNESSolve(snes, real, ref)); 9699566063dSJacob Faibussowitsch PetscCall(VecGetArray(ref, &xi)); 970cb313848SJed Brown xir[0] = PetscRealPart(xi[0]); 971cb313848SJed Brown xir[1] = PetscRealPart(xi[1]); 972cb313848SJed Brown xir[2] = PetscRealPart(xi[2]); 973cfe5744fSMatthew G. Knepley if (8 * ctx->dof == xSize) { 974ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) { 9759371c9d4SSatish Balay a[p * ctx->dof + comp] = x[0 * ctx->dof + comp] * (1 - xir[0]) * (1 - xir[1]) * (1 - xir[2]) + x[3 * ctx->dof + comp] * xir[0] * (1 - xir[1]) * (1 - xir[2]) + x[2 * ctx->dof + comp] * xir[0] * xir[1] * (1 - xir[2]) + x[1 * ctx->dof + comp] * (1 - xir[0]) * xir[1] * (1 - xir[2]) + 9769371c9d4SSatish Balay x[4 * ctx->dof + comp] * (1 - xir[0]) * (1 - xir[1]) * xir[2] + x[5 * ctx->dof + comp] * xir[0] * (1 - xir[1]) * xir[2] + x[6 * ctx->dof + comp] * xir[0] * xir[1] * xir[2] + x[7 * ctx->dof + comp] * (1 - xir[0]) * xir[1] * xir[2]; 977552f7358SJed Brown } 978cfe5744fSMatthew G. Knepley } else { 979ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) a[p * ctx->dof + comp] = x[0 * ctx->dof + comp]; 980cfe5744fSMatthew G. Knepley } 9819566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(ref, &xi)); 9829566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmCoord, NULL, coordsLocal, c, &coordSize, &vertices)); 9839566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, xLocal, c, &xSize, &x)); 9849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &a)); 9859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 986552f7358SJed Brown 9879566063dSJacob Faibussowitsch PetscCall(SNESDestroy(&snes)); 9889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&r)); 9899566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ref)); 9909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&real)); 9919566063dSJacob Faibussowitsch PetscCall(MatDestroy(&J)); 9923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 993552f7358SJed Brown } 994552f7358SJed Brown 9954267b1a3SMatthew G. Knepley /*@C 9964267b1a3SMatthew G. Knepley DMInterpolationEvaluate - Using the input from dm and x, calculates interpolated field values at the interpolation points. 9974267b1a3SMatthew G. Knepley 998552f7358SJed Brown Input Parameters: 999f6dfbefdSBarry Smith + ctx - The `DMInterpolationInfo` context 1000f6dfbefdSBarry Smith . dm - The `DM` 1001552f7358SJed Brown - x - The local vector containing the field to be interpolated 1002552f7358SJed Brown 10032fe279fdSBarry Smith Output Parameter: 1004552f7358SJed Brown . v - The vector containing the interpolated values 10054267b1a3SMatthew G. Knepley 10064267b1a3SMatthew G. Knepley Level: beginner 10074267b1a3SMatthew G. Knepley 10082fe279fdSBarry Smith Note: 10092fe279fdSBarry Smith A suitable `v` can be obtained using `DMInterpolationGetVector()`. 10102fe279fdSBarry Smith 1011420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationGetVector()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 10124267b1a3SMatthew G. Knepley @*/ 1013d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationEvaluate(DMInterpolationInfo ctx, DM dm, Vec x, Vec v) 1014d71ae5a4SJacob Faibussowitsch { 101566a0a883SMatthew G. Knepley PetscDS ds; 101666a0a883SMatthew G. Knepley PetscInt n, p, Nf, field; 101766a0a883SMatthew G. Knepley PetscBool useDS = PETSC_FALSE; 1018552f7358SJed Brown 1019552f7358SJed Brown PetscFunctionBegin; 1020552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 1021552f7358SJed Brown PetscValidHeaderSpecific(x, VEC_CLASSID, 3); 1022552f7358SJed Brown PetscValidHeaderSpecific(v, VEC_CLASSID, 4); 10239566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &n)); 102463a3b9bcSJacob Faibussowitsch PetscCheck(n == ctx->n * ctx->dof, ctx->comm, PETSC_ERR_ARG_SIZ, "Invalid input vector size %" PetscInt_FMT " should be %" PetscInt_FMT, n, ctx->n * ctx->dof); 10253ba16761SJacob Faibussowitsch if (!n) PetscFunctionReturn(PETSC_SUCCESS); 10269566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 1027680d18d5SMatthew G. Knepley if (ds) { 102866a0a883SMatthew G. Knepley useDS = PETSC_TRUE; 10299566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 1030680d18d5SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 103166a0a883SMatthew G. Knepley PetscObject obj; 1032680d18d5SMatthew G. Knepley PetscClassId id; 1033680d18d5SMatthew G. Knepley 10349566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, field, &obj)); 10359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1036c3af198dSMatthew G. Knepley if (id != PETSCFE_CLASSID && id != PETSCFV_CLASSID) { 10379371c9d4SSatish Balay useDS = PETSC_FALSE; 10389371c9d4SSatish Balay break; 10399371c9d4SSatish Balay } 104066a0a883SMatthew G. Knepley } 104166a0a883SMatthew G. Knepley } 104266a0a883SMatthew G. Knepley if (useDS) { 104366a0a883SMatthew G. Knepley const PetscScalar *coords; 104466a0a883SMatthew G. Knepley PetscScalar *interpolant; 104566a0a883SMatthew G. Knepley PetscInt cdim, d; 104666a0a883SMatthew G. Knepley 10479566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 10489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 10499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &interpolant)); 1050680d18d5SMatthew G. Knepley for (p = 0; p < ctx->n; ++p) { 105166a0a883SMatthew G. Knepley PetscReal pcoords[3], xi[3]; 1052680d18d5SMatthew G. Knepley PetscScalar *xa = NULL; 105366a0a883SMatthew G. Knepley PetscInt coff = 0, foff = 0, clSize; 1054680d18d5SMatthew G. Knepley 105552aa1562SMatthew G. Knepley if (ctx->cells[p] < 0) continue; 1056680d18d5SMatthew G. Knepley for (d = 0; d < cdim; ++d) pcoords[d] = PetscRealPart(coords[p * cdim + d]); 10579566063dSJacob Faibussowitsch PetscCall(DMPlexCoordinatesToReference(dm, ctx->cells[p], 1, pcoords, xi)); 10589566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, x, ctx->cells[p], &clSize, &xa)); 105966a0a883SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 106066a0a883SMatthew G. Knepley PetscTabulation T; 1061c3af198dSMatthew G. Knepley PetscObject obj; 1062c3af198dSMatthew G. Knepley PetscClassId id; 106366a0a883SMatthew G. Knepley 1064c3af198dSMatthew G. Knepley PetscCall(PetscDSGetDiscretization(ds, field, &obj)); 1065c3af198dSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 1066c3af198dSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1067c3af198dSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 1068c3af198dSMatthew G. Knepley 10699566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation(fe, 1, 1, xi, 0, &T)); 1070680d18d5SMatthew G. Knepley { 1071680d18d5SMatthew G. Knepley const PetscReal *basis = T->T[0]; 1072680d18d5SMatthew G. Knepley const PetscInt Nb = T->Nb; 1073680d18d5SMatthew G. Knepley const PetscInt Nc = T->Nc; 107466a0a883SMatthew G. Knepley 1075c3af198dSMatthew G. Knepley for (PetscInt fc = 0; fc < Nc; ++fc) { 107666a0a883SMatthew G. Knepley interpolant[p * ctx->dof + coff + fc] = 0.0; 1077c3af198dSMatthew G. Knepley for (PetscInt f = 0; f < Nb; ++f) interpolant[p * ctx->dof + coff + fc] += xa[foff + f] * basis[(0 * Nb + f) * Nc + fc]; 1078680d18d5SMatthew G. Knepley } 107966a0a883SMatthew G. Knepley coff += Nc; 108066a0a883SMatthew G. Knepley foff += Nb; 1081680d18d5SMatthew G. Knepley } 10829566063dSJacob Faibussowitsch PetscCall(PetscTabulationDestroy(&T)); 1083c3af198dSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1084c3af198dSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 1085c3af198dSMatthew G. Knepley PetscInt Nc; 1086c3af198dSMatthew G. Knepley 1087c3af198dSMatthew G. Knepley // TODO Could use reconstruction if available 1088c3af198dSMatthew G. Knepley PetscCall(PetscFVGetNumComponents(fv, &Nc)); 1089c3af198dSMatthew G. Knepley for (PetscInt fc = 0; fc < Nc; ++fc) interpolant[p * ctx->dof + coff + fc] = xa[foff + fc]; 1090c3af198dSMatthew G. Knepley coff += Nc; 1091c3af198dSMatthew G. Knepley foff += Nc; 1092c3af198dSMatthew G. Knepley } 1093680d18d5SMatthew G. Knepley } 10949566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, x, ctx->cells[p], &clSize, &xa)); 109563a3b9bcSJacob Faibussowitsch PetscCheck(coff == ctx->dof, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Total components %" PetscInt_FMT " != %" PetscInt_FMT " dof specified for interpolation", coff, ctx->dof); 1096c3af198dSMatthew G. Knepley PetscCheck(foff == clSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Total FE/FV space size %" PetscInt_FMT " != %" PetscInt_FMT " closure size", foff, clSize); 109766a0a883SMatthew G. Knepley } 10989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 10999566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &interpolant)); 110066a0a883SMatthew G. Knepley } else { 1101ab72731fSMatthew G. Knepley for (PetscInt p = 0; p < ctx->n; ++p) { 1102ab72731fSMatthew G. Knepley const PetscInt cell = ctx->cells[p]; 110366a0a883SMatthew G. Knepley DMPolytopeType ct; 110466a0a883SMatthew G. Knepley 1105ab72731fSMatthew G. Knepley PetscCall(DMPlexGetCellType(dm, cell, &ct)); 1106680d18d5SMatthew G. Knepley switch (ct) { 1107d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_SEGMENT: 1108ab72731fSMatthew G. Knepley PetscCall(DMInterpolate_Segment_Private(ctx, dm, p, x, v)); 1109d71ae5a4SJacob Faibussowitsch break; 1110d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_TRIANGLE: 1111ab72731fSMatthew G. Knepley PetscCall(DMInterpolate_Triangle_Private(ctx, dm, p, x, v)); 1112d71ae5a4SJacob Faibussowitsch break; 1113d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUADRILATERAL: 1114ab72731fSMatthew G. Knepley PetscCall(DMInterpolate_Quad_Private(ctx, dm, p, x, v)); 1115d71ae5a4SJacob Faibussowitsch break; 1116d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_TETRAHEDRON: 1117ab72731fSMatthew G. Knepley PetscCall(DMInterpolate_Tetrahedron_Private(ctx, dm, p, x, v)); 1118d71ae5a4SJacob Faibussowitsch break; 1119d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_HEXAHEDRON: 1120ab72731fSMatthew G. Knepley PetscCall(DMInterpolate_Hex_Private(ctx, dm, cell, x, v)); 1121d71ae5a4SJacob Faibussowitsch break; 1122d71ae5a4SJacob Faibussowitsch default: 1123d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for cell type %s", DMPolytopeTypes[PetscMax(0, PetscMin(ct, DM_NUM_POLYTOPES))]); 1124680d18d5SMatthew G. Knepley } 1125552f7358SJed Brown } 1126ab72731fSMatthew G. Knepley } 11273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1128552f7358SJed Brown } 1129552f7358SJed Brown 11304267b1a3SMatthew G. Knepley /*@C 1131f6dfbefdSBarry Smith DMInterpolationDestroy - Destroys a `DMInterpolationInfo` context 11324267b1a3SMatthew G. Knepley 1133c3339decSBarry Smith Collective 11344267b1a3SMatthew G. Knepley 11354267b1a3SMatthew G. Knepley Input Parameter: 11364267b1a3SMatthew G. Knepley . ctx - the context 11374267b1a3SMatthew G. Knepley 11384267b1a3SMatthew G. Knepley Level: beginner 11394267b1a3SMatthew G. Knepley 1140420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMInterpolationInfo`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 11414267b1a3SMatthew G. Knepley @*/ 1142d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationDestroy(DMInterpolationInfo *ctx) 1143d71ae5a4SJacob Faibussowitsch { 1144552f7358SJed Brown PetscFunctionBegin; 11454f572ea9SToby Isaac PetscAssertPointer(ctx, 1); 11469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*ctx)->coords)); 11479566063dSJacob Faibussowitsch PetscCall(PetscFree((*ctx)->points)); 11489566063dSJacob Faibussowitsch PetscCall(PetscFree((*ctx)->cells)); 11499566063dSJacob Faibussowitsch PetscCall(PetscFree(*ctx)); 11500298fd71SBarry Smith *ctx = NULL; 11513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1152552f7358SJed Brown } 1153cc0c4584SMatthew G. Knepley 1154cc0c4584SMatthew G. Knepley /*@C 1155cc0c4584SMatthew G. Knepley SNESMonitorFields - Monitors the residual for each field separately 1156cc0c4584SMatthew G. Knepley 1157c3339decSBarry Smith Collective 1158cc0c4584SMatthew G. Knepley 1159cc0c4584SMatthew G. Knepley Input Parameters: 1160420bcc1bSBarry Smith + snes - the `SNES` context, must have an attached `DM` 1161cc0c4584SMatthew G. Knepley . its - iteration number 1162cc0c4584SMatthew G. Knepley . fgnorm - 2-norm of residual 1163f6dfbefdSBarry Smith - vf - `PetscViewerAndFormat` of `PetscViewerType` `PETSCVIEWERASCII` 1164cc0c4584SMatthew G. Knepley 11652fe279fdSBarry Smith Level: intermediate 11662fe279fdSBarry Smith 1167f6dfbefdSBarry Smith Note: 1168cc0c4584SMatthew G. Knepley This routine prints the residual norm at each iteration. 1169cc0c4584SMatthew G. Knepley 1170420bcc1bSBarry Smith .seealso: [](ch_snes), `SNES`, `SNESMonitorSet()`, `SNESMonitorDefault()` 1171cc0c4584SMatthew G. Knepley @*/ 1172d71ae5a4SJacob Faibussowitsch PetscErrorCode SNESMonitorFields(SNES snes, PetscInt its, PetscReal fgnorm, PetscViewerAndFormat *vf) 1173d71ae5a4SJacob Faibussowitsch { 1174d43b4f6eSBarry Smith PetscViewer viewer = vf->viewer; 1175cc0c4584SMatthew G. Knepley Vec res; 1176cc0c4584SMatthew G. Knepley DM dm; 1177cc0c4584SMatthew G. Knepley PetscSection s; 1178cc0c4584SMatthew G. Knepley const PetscScalar *r; 1179cc0c4584SMatthew G. Knepley PetscReal *lnorms, *norms; 1180cc0c4584SMatthew G. Knepley PetscInt numFields, f, pStart, pEnd, p; 1181cc0c4584SMatthew G. Knepley 1182cc0c4584SMatthew G. Knepley PetscFunctionBegin; 11834d4332d5SBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 4); 11849566063dSJacob Faibussowitsch PetscCall(SNESGetFunction(snes, &res, NULL, NULL)); 11859566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 11869566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 11879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &numFields)); 11889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 11899566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &lnorms, numFields, &norms)); 11909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(res, &r)); 1191cc0c4584SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 1192cc0c4584SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 1193cc0c4584SMatthew G. Knepley PetscInt fdof, foff, d; 1194cc0c4584SMatthew G. Knepley 11959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &fdof)); 11969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(s, p, f, &foff)); 1197cc0c4584SMatthew G. Knepley for (d = 0; d < fdof; ++d) lnorms[f] += PetscRealPart(PetscSqr(r[foff + d])); 1198cc0c4584SMatthew G. Knepley } 1199cc0c4584SMatthew G. Knepley } 12009566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(res, &r)); 12011c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lnorms, norms, numFields, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 12029566063dSJacob Faibussowitsch PetscCall(PetscViewerPushFormat(viewer, vf->format)); 12039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIAddTab(viewer, ((PetscObject)snes)->tablevel)); 120463a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%3" PetscInt_FMT " SNES Function norm %14.12e [", its, (double)fgnorm)); 1205cc0c4584SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 12069566063dSJacob Faibussowitsch if (f > 0) PetscCall(PetscViewerASCIIPrintf(viewer, ", ")); 12079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%14.12e", (double)PetscSqrtReal(norms[f]))); 1208cc0c4584SMatthew G. Knepley } 12099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "]\n")); 12109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISubtractTab(viewer, ((PetscObject)snes)->tablevel)); 12119566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 12129566063dSJacob Faibussowitsch PetscCall(PetscFree2(lnorms, norms)); 12133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1214cc0c4584SMatthew G. Knepley } 121524cdb843SMatthew G. Knepley 1216*6493148fSStefano Zampini /********************* SNES callbacks **************************/ 1217*6493148fSStefano Zampini 1218*6493148fSStefano Zampini /*@ 1219*6493148fSStefano Zampini DMPlexSNESComputeObjectiveFEM - Sums the local objectives from the local input X using pointwise functions specified by the user 1220*6493148fSStefano Zampini 1221*6493148fSStefano Zampini Input Parameters: 1222*6493148fSStefano Zampini + dm - The mesh 1223*6493148fSStefano Zampini . X - Local solution 1224*6493148fSStefano Zampini - user - The user context 1225*6493148fSStefano Zampini 1226*6493148fSStefano Zampini Output Parameter: 1227*6493148fSStefano Zampini . obj - Local objective value 1228*6493148fSStefano Zampini 1229*6493148fSStefano Zampini Level: developer 1230*6493148fSStefano Zampini 1231*6493148fSStefano Zampini .seealso: `DM`, `DMPlexSNESComputeResidualFEM()` 1232*6493148fSStefano Zampini @*/ 1233*6493148fSStefano Zampini PetscErrorCode DMPlexSNESComputeObjectiveFEM(DM dm, Vec X, PetscReal *obj, void *user) 1234*6493148fSStefano Zampini { 1235*6493148fSStefano Zampini PetscInt Nf, cellHeight, cStart, cEnd; 1236*6493148fSStefano Zampini PetscScalar *cintegral; 1237*6493148fSStefano Zampini 1238*6493148fSStefano Zampini PetscFunctionBegin; 1239*6493148fSStefano Zampini PetscCall(DMGetNumFields(dm, &Nf)); 1240*6493148fSStefano Zampini PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 1241*6493148fSStefano Zampini PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 1242*6493148fSStefano Zampini PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral)); 1243*6493148fSStefano Zampini PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 1244*6493148fSStefano Zampini PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user)); 1245*6493148fSStefano Zampini /* Sum up values */ 1246*6493148fSStefano Zampini *obj = 0; 1247*6493148fSStefano Zampini for (PetscInt c = cStart; c < cEnd; ++c) 1248*6493148fSStefano Zampini for (PetscInt f = 0; f < Nf; ++f) *obj += PetscRealPart(cintegral[(c - cStart) * Nf + f]); 1249*6493148fSStefano Zampini PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 1250*6493148fSStefano Zampini PetscCall(PetscFree(cintegral)); 1251*6493148fSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1252*6493148fSStefano Zampini } 125324cdb843SMatthew G. Knepley 125424cdb843SMatthew G. Knepley /*@ 1255420bcc1bSBarry Smith DMPlexSNESComputeResidualFEM - Sums the local residual into vector `F` from the local input `X` using pointwise functions specified by the user 125624cdb843SMatthew G. Knepley 125724cdb843SMatthew G. Knepley Input Parameters: 125824cdb843SMatthew G. Knepley + dm - The mesh 125924cdb843SMatthew G. Knepley . X - Local solution 126024cdb843SMatthew G. Knepley - user - The user context 126124cdb843SMatthew G. Knepley 126224cdb843SMatthew G. Knepley Output Parameter: 126324cdb843SMatthew G. Knepley . F - Local output vector 126424cdb843SMatthew G. Knepley 12652fe279fdSBarry Smith Level: developer 12662fe279fdSBarry Smith 1267f6dfbefdSBarry Smith Note: 1268420bcc1bSBarry Smith The residual is summed into `F`; the caller is responsible for using `VecZeroEntries()` or otherwise ensuring that any data in `F` is intentional. 12698db23a53SJed Brown 1270*6493148fSStefano Zampini .seealso: [](ch_snes), `DM`, `DMPLEX`, `DMSNESComputeJacobianAction()` 127124cdb843SMatthew G. Knepley @*/ 1272d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSNESComputeResidualFEM(DM dm, Vec X, Vec F, void *user) 1273d71ae5a4SJacob Faibussowitsch { 12746da023fcSToby Isaac DM plex; 1275083401c6SMatthew G. Knepley IS allcellIS; 12766528b96dSMatthew G. Knepley PetscInt Nds, s; 127724cdb843SMatthew G. Knepley 127824cdb843SMatthew G. Knepley PetscFunctionBegin; 12799566063dSJacob Faibussowitsch PetscCall(DMSNESConvertPlex(dm, &plex, PETSC_TRUE)); 12809566063dSJacob Faibussowitsch PetscCall(DMPlexGetAllCells_Internal(plex, &allcellIS)); 12819566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 12826528b96dSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 12836528b96dSMatthew G. Knepley PetscDS ds; 12846528b96dSMatthew G. Knepley IS cellIS; 128506ad1575SMatthew G. Knepley PetscFormKey key; 12866528b96dSMatthew G. Knepley 128707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &key.label, NULL, &ds, NULL)); 12886528b96dSMatthew G. Knepley key.value = 0; 12896528b96dSMatthew G. Knepley key.field = 0; 129006ad1575SMatthew G. Knepley key.part = 0; 12916528b96dSMatthew G. Knepley if (!key.label) { 12929566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)allcellIS)); 12936528b96dSMatthew G. Knepley cellIS = allcellIS; 12946528b96dSMatthew G. Knepley } else { 12956528b96dSMatthew G. Knepley IS pointIS; 12966528b96dSMatthew G. Knepley 12976528b96dSMatthew G. Knepley key.value = 1; 12989566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS)); 12999566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(allcellIS, pointIS, &cellIS)); 13009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 13016528b96dSMatthew G. Knepley } 13029566063dSJacob Faibussowitsch PetscCall(DMPlexComputeResidual_Internal(plex, key, cellIS, PETSC_MIN_REAL, X, NULL, 0.0, F, user)); 13039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 13046528b96dSMatthew G. Knepley } 13059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 13069566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 13073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13086528b96dSMatthew G. Knepley } 13096528b96dSMatthew G. Knepley 1310bdd6f66aSToby Isaac /*@ 1311420bcc1bSBarry Smith DMPlexSNESComputeResidualDS - Sums the local residual into vector `F` from the local input `X` using all pointwise functions with unique keys in the `PetscDS` 1312d2b2dc1eSMatthew G. Knepley 1313d2b2dc1eSMatthew G. Knepley Input Parameters: 1314d2b2dc1eSMatthew G. Knepley + dm - The mesh 1315d2b2dc1eSMatthew G. Knepley . X - Local solution 1316d2b2dc1eSMatthew G. Knepley - user - The user context 1317d2b2dc1eSMatthew G. Knepley 1318d2b2dc1eSMatthew G. Knepley Output Parameter: 1319d2b2dc1eSMatthew G. Knepley . F - Local output vector 1320d2b2dc1eSMatthew G. Knepley 1321d2b2dc1eSMatthew G. Knepley Level: developer 1322d2b2dc1eSMatthew G. Knepley 1323d2b2dc1eSMatthew G. Knepley Note: 1324420bcc1bSBarry Smith The residual is summed into `F`; the caller is responsible for using `VecZeroEntries()` or otherwise ensuring that any data in `F` is intentional. 1325d2b2dc1eSMatthew G. Knepley 1326420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMPLEX`, `DMPlexComputeJacobianAction()` 1327d2b2dc1eSMatthew G. Knepley @*/ 1328d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSNESComputeResidualDS(DM dm, Vec X, Vec F, void *user) 1329d2b2dc1eSMatthew G. Knepley { 1330d2b2dc1eSMatthew G. Knepley DM plex; 1331d2b2dc1eSMatthew G. Knepley IS allcellIS; 1332d2b2dc1eSMatthew G. Knepley PetscInt Nds, s; 1333d2b2dc1eSMatthew G. Knepley 1334d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 1335d2b2dc1eSMatthew G. Knepley PetscCall(DMSNESConvertPlex(dm, &plex, PETSC_TRUE)); 1336d2b2dc1eSMatthew G. Knepley PetscCall(DMPlexGetAllCells_Internal(plex, &allcellIS)); 1337d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 1338d2b2dc1eSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 1339d2b2dc1eSMatthew G. Knepley PetscDS ds; 1340d2b2dc1eSMatthew G. Knepley DMLabel label; 1341d2b2dc1eSMatthew G. Knepley IS cellIS; 1342d2b2dc1eSMatthew G. Knepley 1343d2b2dc1eSMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, NULL, &ds, NULL)); 1344d2b2dc1eSMatthew G. Knepley { 1345d2b2dc1eSMatthew G. Knepley PetscWeakFormKind resmap[2] = {PETSC_WF_F0, PETSC_WF_F1}; 1346d2b2dc1eSMatthew G. Knepley PetscWeakForm wf; 1347d2b2dc1eSMatthew G. Knepley PetscInt Nm = 2, m, Nk = 0, k, kp, off = 0; 1348d2b2dc1eSMatthew G. Knepley PetscFormKey *reskeys; 1349d2b2dc1eSMatthew G. Knepley 1350d2b2dc1eSMatthew G. Knepley /* Get unique residual keys */ 1351d2b2dc1eSMatthew G. Knepley for (m = 0; m < Nm; ++m) { 1352d2b2dc1eSMatthew G. Knepley PetscInt Nkm; 1353d2b2dc1eSMatthew G. Knepley PetscCall(PetscHMapFormGetSize(ds->wf->form[resmap[m]], &Nkm)); 1354d2b2dc1eSMatthew G. Knepley Nk += Nkm; 1355d2b2dc1eSMatthew G. Knepley } 1356d2b2dc1eSMatthew G. Knepley PetscCall(PetscMalloc1(Nk, &reskeys)); 1357d2b2dc1eSMatthew G. Knepley for (m = 0; m < Nm; ++m) PetscCall(PetscHMapFormGetKeys(ds->wf->form[resmap[m]], &off, reskeys)); 1358d2b2dc1eSMatthew G. Knepley PetscCheck(off == Nk, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of keys %" PetscInt_FMT " should be %" PetscInt_FMT, off, Nk); 1359d2b2dc1eSMatthew G. Knepley PetscCall(PetscFormKeySort(Nk, reskeys)); 1360d2b2dc1eSMatthew G. Knepley for (k = 0, kp = 1; kp < Nk; ++kp) { 1361d2b2dc1eSMatthew G. Knepley if ((reskeys[k].label != reskeys[kp].label) || (reskeys[k].value != reskeys[kp].value)) { 1362d2b2dc1eSMatthew G. Knepley ++k; 1363d2b2dc1eSMatthew G. Knepley if (kp != k) reskeys[k] = reskeys[kp]; 1364d2b2dc1eSMatthew G. Knepley } 1365d2b2dc1eSMatthew G. Knepley } 1366d2b2dc1eSMatthew G. Knepley Nk = k; 1367d2b2dc1eSMatthew G. Knepley 1368d2b2dc1eSMatthew G. Knepley PetscCall(PetscDSGetWeakForm(ds, &wf)); 1369d2b2dc1eSMatthew G. Knepley for (k = 0; k < Nk; ++k) { 1370d2b2dc1eSMatthew G. Knepley DMLabel label = reskeys[k].label; 1371d2b2dc1eSMatthew G. Knepley PetscInt val = reskeys[k].value; 1372d2b2dc1eSMatthew G. Knepley 1373d2b2dc1eSMatthew G. Knepley if (!label) { 1374d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)allcellIS)); 1375d2b2dc1eSMatthew G. Knepley cellIS = allcellIS; 1376d2b2dc1eSMatthew G. Knepley } else { 1377d2b2dc1eSMatthew G. Knepley IS pointIS; 1378d2b2dc1eSMatthew G. Knepley 1379d2b2dc1eSMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, val, &pointIS)); 1380d2b2dc1eSMatthew G. Knepley PetscCall(ISIntersect_Caching_Internal(allcellIS, pointIS, &cellIS)); 1381d2b2dc1eSMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1382d2b2dc1eSMatthew G. Knepley } 1383d2b2dc1eSMatthew G. Knepley PetscCall(DMPlexComputeResidual_Internal(plex, reskeys[k], cellIS, PETSC_MIN_REAL, X, NULL, 0.0, F, user)); 1384d2b2dc1eSMatthew G. Knepley PetscCall(ISDestroy(&cellIS)); 1385d2b2dc1eSMatthew G. Knepley } 1386d2b2dc1eSMatthew G. Knepley PetscCall(PetscFree(reskeys)); 1387d2b2dc1eSMatthew G. Knepley } 1388d2b2dc1eSMatthew G. Knepley } 1389d2b2dc1eSMatthew G. Knepley PetscCall(ISDestroy(&allcellIS)); 1390d2b2dc1eSMatthew G. Knepley PetscCall(DMDestroy(&plex)); 1391d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 1392d2b2dc1eSMatthew G. Knepley } 1393d2b2dc1eSMatthew G. Knepley 1394d2b2dc1eSMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 1395d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSNESComputeResidualCEED(DM dm, Vec locX, Vec locF, void *user) 1396d2b2dc1eSMatthew G. Knepley { 1397d2b2dc1eSMatthew G. Knepley Ceed ceed; 1398d2b2dc1eSMatthew G. Knepley DMCeed sd = dm->dmceed; 1399d2b2dc1eSMatthew G. Knepley CeedVector clocX, clocF; 1400d2b2dc1eSMatthew G. Knepley 1401d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 1402d2b2dc1eSMatthew G. Knepley PetscCall(DMGetCeed(dm, &ceed)); 1403d2b2dc1eSMatthew G. Knepley PetscCheck(sd, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "This DM has no CEED data. Call DMCeedCreate() before computing the residual."); 1404d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedComputeGeometry(dm, sd)); 1405d2b2dc1eSMatthew G. Knepley 1406d2b2dc1eSMatthew G. Knepley PetscCall(VecGetCeedVectorRead(locX, ceed, &clocX)); 1407d2b2dc1eSMatthew G. Knepley PetscCall(VecGetCeedVector(locF, ceed, &clocF)); 1408d2b2dc1eSMatthew G. Knepley PetscCallCEED(CeedOperatorApplyAdd(sd->op, clocX, clocF, CEED_REQUEST_IMMEDIATE)); 1409d2b2dc1eSMatthew G. Knepley PetscCall(VecRestoreCeedVectorRead(locX, &clocX)); 1410d2b2dc1eSMatthew G. Knepley PetscCall(VecRestoreCeedVector(locF, &clocF)); 1411d2b2dc1eSMatthew G. Knepley 1412d2b2dc1eSMatthew G. Knepley { 1413d2b2dc1eSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 1414d2b2dc1eSMatthew G. Knepley 1415d2b2dc1eSMatthew G. Knepley if (mesh->printFEM) { 1416d2b2dc1eSMatthew G. Knepley PetscSection section; 1417d2b2dc1eSMatthew G. Knepley Vec locFbc; 1418d2b2dc1eSMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 1419d2b2dc1eSMatthew G. Knepley PetscScalar *zeroes; 1420d2b2dc1eSMatthew G. Knepley 1421d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, §ion)); 1422d2b2dc1eSMatthew G. Knepley PetscCall(VecDuplicate(locF, &locFbc)); 1423d2b2dc1eSMatthew G. Knepley PetscCall(VecCopy(locF, locFbc)); 1424d2b2dc1eSMatthew G. Knepley PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 1425d2b2dc1eSMatthew G. Knepley PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 1426d2b2dc1eSMatthew G. Knepley PetscCall(PetscCalloc1(maxDof, &zeroes)); 1427d2b2dc1eSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 1428d2b2dc1eSMatthew G. Knepley PetscCall(PetscFree(zeroes)); 1429d2b2dc1eSMatthew G. Knepley PetscCall(DMPrintLocalVec(dm, "Residual", mesh->printTol, locFbc)); 1430d2b2dc1eSMatthew G. Knepley PetscCall(VecDestroy(&locFbc)); 1431d2b2dc1eSMatthew G. Knepley } 1432d2b2dc1eSMatthew G. Knepley } 1433d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 1434d2b2dc1eSMatthew G. Knepley } 1435d2b2dc1eSMatthew G. Knepley #endif 1436d2b2dc1eSMatthew G. Knepley 1437d2b2dc1eSMatthew G. Knepley /*@ 1438420bcc1bSBarry Smith DMPlexSNESComputeBoundaryFEM - Form the boundary values for the local input `X` 1439bdd6f66aSToby Isaac 1440bdd6f66aSToby Isaac Input Parameters: 1441bdd6f66aSToby Isaac + dm - The mesh 1442bdd6f66aSToby Isaac - user - The user context 1443bdd6f66aSToby Isaac 1444bdd6f66aSToby Isaac Output Parameter: 1445bdd6f66aSToby Isaac . X - Local solution 1446bdd6f66aSToby Isaac 1447bdd6f66aSToby Isaac Level: developer 1448bdd6f66aSToby Isaac 1449420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `DMPLEX`, `DMPlexComputeJacobianAction()` 1450bdd6f66aSToby Isaac @*/ 1451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSNESComputeBoundaryFEM(DM dm, Vec X, void *user) 1452d71ae5a4SJacob Faibussowitsch { 1453bdd6f66aSToby Isaac DM plex; 1454bdd6f66aSToby Isaac 1455bdd6f66aSToby Isaac PetscFunctionBegin; 14569566063dSJacob Faibussowitsch PetscCall(DMSNESConvertPlex(dm, &plex, PETSC_TRUE)); 14579566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(plex, PETSC_TRUE, X, PETSC_MIN_REAL, NULL, NULL, NULL)); 14589566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 14593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1460bdd6f66aSToby Isaac } 1461bdd6f66aSToby Isaac 14627a73cf09SMatthew G. Knepley /*@ 14638e3a2eefSMatthew G. Knepley DMSNESComputeJacobianAction - Compute the action of the Jacobian J(X) on Y 14647a73cf09SMatthew G. Knepley 14657a73cf09SMatthew G. Knepley Input Parameters: 1466f6dfbefdSBarry Smith + dm - The `DM` 14677a73cf09SMatthew G. Knepley . X - Local solution vector 14687a73cf09SMatthew G. Knepley . Y - Local input vector 14697a73cf09SMatthew G. Knepley - user - The user context 14707a73cf09SMatthew G. Knepley 14717a73cf09SMatthew G. Knepley Output Parameter: 147269d47153SPierre Jolivet . F - local output vector 14737a73cf09SMatthew G. Knepley 14747a73cf09SMatthew G. Knepley Level: developer 14757a73cf09SMatthew G. Knepley 14768e3a2eefSMatthew G. Knepley Notes: 1477f6dfbefdSBarry Smith Users will typically use `DMSNESCreateJacobianMF()` followed by `MatMult()` instead of calling this routine directly. 14788e3a2eefSMatthew G. Knepley 1479420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, ``DMSNESCreateJacobianMF()`, `DMPlexSNESComputeResidualFEM()` 14807a73cf09SMatthew G. Knepley @*/ 1481d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESComputeJacobianAction(DM dm, Vec X, Vec Y, Vec F, void *user) 1482d71ae5a4SJacob Faibussowitsch { 14838e3a2eefSMatthew G. Knepley DM plex; 14848e3a2eefSMatthew G. Knepley IS allcellIS; 14858e3a2eefSMatthew G. Knepley PetscInt Nds, s; 1486a925c78cSMatthew G. Knepley 1487a925c78cSMatthew G. Knepley PetscFunctionBegin; 14889566063dSJacob Faibussowitsch PetscCall(DMSNESConvertPlex(dm, &plex, PETSC_TRUE)); 14899566063dSJacob Faibussowitsch PetscCall(DMPlexGetAllCells_Internal(plex, &allcellIS)); 14909566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 14918e3a2eefSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 14928e3a2eefSMatthew G. Knepley PetscDS ds; 14938e3a2eefSMatthew G. Knepley DMLabel label; 14948e3a2eefSMatthew G. Knepley IS cellIS; 14957a73cf09SMatthew G. Knepley 149607218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, NULL, &ds, NULL)); 14978e3a2eefSMatthew G. Knepley { 149806ad1575SMatthew G. Knepley PetscWeakFormKind jacmap[4] = {PETSC_WF_G0, PETSC_WF_G1, PETSC_WF_G2, PETSC_WF_G3}; 14998e3a2eefSMatthew G. Knepley PetscWeakForm wf; 15008e3a2eefSMatthew G. Knepley PetscInt Nm = 4, m, Nk = 0, k, kp, off = 0; 150106ad1575SMatthew G. Knepley PetscFormKey *jackeys; 15028e3a2eefSMatthew G. Knepley 15038e3a2eefSMatthew G. Knepley /* Get unique Jacobian keys */ 15048e3a2eefSMatthew G. Knepley for (m = 0; m < Nm; ++m) { 15058e3a2eefSMatthew G. Knepley PetscInt Nkm; 15069566063dSJacob Faibussowitsch PetscCall(PetscHMapFormGetSize(ds->wf->form[jacmap[m]], &Nkm)); 15078e3a2eefSMatthew G. Knepley Nk += Nkm; 15088e3a2eefSMatthew G. Knepley } 15099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nk, &jackeys)); 151048a46eb9SPierre Jolivet for (m = 0; m < Nm; ++m) PetscCall(PetscHMapFormGetKeys(ds->wf->form[jacmap[m]], &off, jackeys)); 151163a3b9bcSJacob Faibussowitsch PetscCheck(off == Nk, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of keys %" PetscInt_FMT " should be %" PetscInt_FMT, off, Nk); 15129566063dSJacob Faibussowitsch PetscCall(PetscFormKeySort(Nk, jackeys)); 15138e3a2eefSMatthew G. Knepley for (k = 0, kp = 1; kp < Nk; ++kp) { 15148e3a2eefSMatthew G. Knepley if ((jackeys[k].label != jackeys[kp].label) || (jackeys[k].value != jackeys[kp].value)) { 15158e3a2eefSMatthew G. Knepley ++k; 15168e3a2eefSMatthew G. Knepley if (kp != k) jackeys[k] = jackeys[kp]; 15178e3a2eefSMatthew G. Knepley } 15188e3a2eefSMatthew G. Knepley } 15198e3a2eefSMatthew G. Knepley Nk = k; 15208e3a2eefSMatthew G. Knepley 15219566063dSJacob Faibussowitsch PetscCall(PetscDSGetWeakForm(ds, &wf)); 15228e3a2eefSMatthew G. Knepley for (k = 0; k < Nk; ++k) { 15238e3a2eefSMatthew G. Knepley DMLabel label = jackeys[k].label; 15248e3a2eefSMatthew G. Knepley PetscInt val = jackeys[k].value; 15258e3a2eefSMatthew G. Knepley 15268e3a2eefSMatthew G. Knepley if (!label) { 15279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)allcellIS)); 15288e3a2eefSMatthew G. Knepley cellIS = allcellIS; 15297a73cf09SMatthew G. Knepley } else { 15308e3a2eefSMatthew G. Knepley IS pointIS; 1531a925c78cSMatthew G. Knepley 15329566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, val, &pointIS)); 15339566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(allcellIS, pointIS, &cellIS)); 15349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 1535a925c78cSMatthew G. Knepley } 15369566063dSJacob Faibussowitsch PetscCall(DMPlexComputeJacobian_Action_Internal(plex, jackeys[k], cellIS, 0.0, 0.0, X, NULL, Y, F, user)); 15379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 15388e3a2eefSMatthew G. Knepley } 15399566063dSJacob Faibussowitsch PetscCall(PetscFree(jackeys)); 15408e3a2eefSMatthew G. Knepley } 15418e3a2eefSMatthew G. Knepley } 15429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 15439566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 15443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1545a925c78cSMatthew G. Knepley } 1546a925c78cSMatthew G. Knepley 154724cdb843SMatthew G. Knepley /*@ 15482fe279fdSBarry Smith DMPlexSNESComputeJacobianFEM - Form the local portion of the Jacobian matrix `Jac` at the local solution `X` using pointwise functions specified by the user. 154924cdb843SMatthew G. Knepley 155024cdb843SMatthew G. Knepley Input Parameters: 15512fe279fdSBarry Smith + dm - The `DM` 155224cdb843SMatthew G. Knepley . X - Local input vector 155324cdb843SMatthew G. Knepley - user - The user context 155424cdb843SMatthew G. Knepley 15552fe279fdSBarry Smith Output Parameters: 15562fe279fdSBarry Smith + Jac - Jacobian matrix 15572fe279fdSBarry Smith - JacP - approximate Jacobian from which the preconditioner will be built, often `Jac` 15582fe279fdSBarry Smith 15592fe279fdSBarry Smith Level: developer 156024cdb843SMatthew G. Knepley 156124cdb843SMatthew G. Knepley Note: 156224cdb843SMatthew G. Knepley We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator, 156324cdb843SMatthew G. Knepley like a GPU, or vectorize on a multicore machine. 156424cdb843SMatthew G. Knepley 1565420bcc1bSBarry Smith .seealso: [](ch_snes), `DMPLEX`, `Mat` 156624cdb843SMatthew G. Knepley @*/ 1567d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSNESComputeJacobianFEM(DM dm, Vec X, Mat Jac, Mat JacP, void *user) 1568d71ae5a4SJacob Faibussowitsch { 15696da023fcSToby Isaac DM plex; 1570083401c6SMatthew G. Knepley IS allcellIS; 1571f04eb4edSMatthew G. Knepley PetscBool hasJac, hasPrec; 15726528b96dSMatthew G. Knepley PetscInt Nds, s; 157324cdb843SMatthew G. Knepley 157424cdb843SMatthew G. Knepley PetscFunctionBegin; 15759566063dSJacob Faibussowitsch PetscCall(DMSNESConvertPlex(dm, &plex, PETSC_TRUE)); 15769566063dSJacob Faibussowitsch PetscCall(DMPlexGetAllCells_Internal(plex, &allcellIS)); 15779566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 1578083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 1579083401c6SMatthew G. Knepley PetscDS ds; 1580083401c6SMatthew G. Knepley IS cellIS; 158106ad1575SMatthew G. Knepley PetscFormKey key; 1582083401c6SMatthew G. Knepley 158307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &key.label, NULL, &ds, NULL)); 15846528b96dSMatthew G. Knepley key.value = 0; 15856528b96dSMatthew G. Knepley key.field = 0; 158606ad1575SMatthew G. Knepley key.part = 0; 15876528b96dSMatthew G. Knepley if (!key.label) { 15889566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)allcellIS)); 1589083401c6SMatthew G. Knepley cellIS = allcellIS; 1590083401c6SMatthew G. Knepley } else { 1591083401c6SMatthew G. Knepley IS pointIS; 1592083401c6SMatthew G. Knepley 15936528b96dSMatthew G. Knepley key.value = 1; 15949566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS)); 15959566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(allcellIS, pointIS, &cellIS)); 15969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 1597083401c6SMatthew G. Knepley } 1598083401c6SMatthew G. Knepley if (!s) { 15999566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(ds, &hasJac)); 16009566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(ds, &hasPrec)); 16019566063dSJacob Faibussowitsch if (hasJac && hasPrec) PetscCall(MatZeroEntries(Jac)); 16029566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(JacP)); 1603083401c6SMatthew G. Knepley } 16049566063dSJacob Faibussowitsch PetscCall(DMPlexComputeJacobian_Internal(plex, key, cellIS, 0.0, 0.0, X, NULL, Jac, JacP, user)); 16059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 1606083401c6SMatthew G. Knepley } 16079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 16089566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 16093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 161024cdb843SMatthew G. Knepley } 16111878804aSMatthew G. Knepley 16129371c9d4SSatish Balay struct _DMSNESJacobianMFCtx { 16138e3a2eefSMatthew G. Knepley DM dm; 16148e3a2eefSMatthew G. Knepley Vec X; 16158e3a2eefSMatthew G. Knepley void *ctx; 16168e3a2eefSMatthew G. Knepley }; 16178e3a2eefSMatthew G. Knepley 1618d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSNESJacobianMF_Destroy_Private(Mat A) 1619d71ae5a4SJacob Faibussowitsch { 16208e3a2eefSMatthew G. Knepley struct _DMSNESJacobianMFCtx *ctx; 16218e3a2eefSMatthew G. Knepley 16228e3a2eefSMatthew G. Knepley PetscFunctionBegin; 16239566063dSJacob Faibussowitsch PetscCall(MatShellGetContext(A, &ctx)); 16249566063dSJacob Faibussowitsch PetscCall(MatShellSetContext(A, NULL)); 16259566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ctx->dm)); 16269566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ctx->X)); 16279566063dSJacob Faibussowitsch PetscCall(PetscFree(ctx)); 16283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16298e3a2eefSMatthew G. Knepley } 16308e3a2eefSMatthew G. Knepley 1631d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSNESJacobianMF_Mult_Private(Mat A, Vec Y, Vec Z) 1632d71ae5a4SJacob Faibussowitsch { 16338e3a2eefSMatthew G. Knepley struct _DMSNESJacobianMFCtx *ctx; 16348e3a2eefSMatthew G. Knepley 16358e3a2eefSMatthew G. Knepley PetscFunctionBegin; 16369566063dSJacob Faibussowitsch PetscCall(MatShellGetContext(A, &ctx)); 16379566063dSJacob Faibussowitsch PetscCall(DMSNESComputeJacobianAction(ctx->dm, ctx->X, Y, Z, ctx->ctx)); 16383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16398e3a2eefSMatthew G. Knepley } 16408e3a2eefSMatthew G. Knepley 16418e3a2eefSMatthew G. Knepley /*@ 1642f6dfbefdSBarry Smith DMSNESCreateJacobianMF - Create a `Mat` which computes the action of the Jacobian matrix-free 16438e3a2eefSMatthew G. Knepley 1644c3339decSBarry Smith Collective 16458e3a2eefSMatthew G. Knepley 16468e3a2eefSMatthew G. Knepley Input Parameters: 1647f6dfbefdSBarry Smith + dm - The `DM` 16488e3a2eefSMatthew G. Knepley . X - The evaluation point for the Jacobian 16492fe279fdSBarry Smith - user - A user context, or `NULL` 16508e3a2eefSMatthew G. Knepley 16518e3a2eefSMatthew G. Knepley Output Parameter: 1652f6dfbefdSBarry Smith . J - The `Mat` 16538e3a2eefSMatthew G. Knepley 16548e3a2eefSMatthew G. Knepley Level: advanced 16558e3a2eefSMatthew G. Knepley 1656f6dfbefdSBarry Smith Note: 16572fe279fdSBarry Smith Vec `X` is kept in `J`, so updating `X` then updates the evaluation point. 16588e3a2eefSMatthew G. Knepley 1659420bcc1bSBarry Smith .seealso: [](ch_snes), `DM`, `SNES`, `DMSNESComputeJacobianAction()` 16608e3a2eefSMatthew G. Knepley @*/ 1661d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCreateJacobianMF(DM dm, Vec X, void *user, Mat *J) 1662d71ae5a4SJacob Faibussowitsch { 16638e3a2eefSMatthew G. Knepley struct _DMSNESJacobianMFCtx *ctx; 16648e3a2eefSMatthew G. Knepley PetscInt n, N; 16658e3a2eefSMatthew G. Knepley 16668e3a2eefSMatthew G. Knepley PetscFunctionBegin; 16679566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)dm), J)); 16689566063dSJacob Faibussowitsch PetscCall(MatSetType(*J, MATSHELL)); 16699566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(X, &n)); 16709566063dSJacob Faibussowitsch PetscCall(VecGetSize(X, &N)); 16719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*J, n, n, N, N)); 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 16739566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)X)); 16749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ctx)); 16758e3a2eefSMatthew G. Knepley ctx->dm = dm; 16768e3a2eefSMatthew G. Knepley ctx->X = X; 16778e3a2eefSMatthew G. Knepley ctx->ctx = user; 16789566063dSJacob Faibussowitsch PetscCall(MatShellSetContext(*J, ctx)); 16799566063dSJacob Faibussowitsch PetscCall(MatShellSetOperation(*J, MATOP_DESTROY, (void (*)(void))DMSNESJacobianMF_Destroy_Private)); 16809566063dSJacob Faibussowitsch PetscCall(MatShellSetOperation(*J, MATOP_MULT, (void (*)(void))DMSNESJacobianMF_Mult_Private)); 16813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16828e3a2eefSMatthew G. Knepley } 16838e3a2eefSMatthew G. Knepley 168438cfc46eSPierre Jolivet /* 168538cfc46eSPierre Jolivet MatComputeNeumannOverlap - Computes an unassembled (Neumann) local overlapping Mat in nonlinear context. 168638cfc46eSPierre Jolivet 168738cfc46eSPierre Jolivet Input Parameters: 16882fe279fdSBarry Smith + X - `SNES` linearization point 168938cfc46eSPierre Jolivet . ovl - index set of overlapping subdomains 169038cfc46eSPierre Jolivet 169138cfc46eSPierre Jolivet Output Parameter: 169238cfc46eSPierre Jolivet . J - unassembled (Neumann) local matrix 169338cfc46eSPierre Jolivet 169438cfc46eSPierre Jolivet Level: intermediate 169538cfc46eSPierre Jolivet 1696420bcc1bSBarry Smith .seealso: [](ch_snes), `DMCreateNeumannOverlap()`, `MATIS`, `PCHPDDMSetAuxiliaryMat()` 169738cfc46eSPierre Jolivet */ 1698d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatComputeNeumannOverlap_Plex(Mat J, PetscReal t, Vec X, Vec X_t, PetscReal s, IS ovl, void *ctx) 1699d71ae5a4SJacob Faibussowitsch { 170038cfc46eSPierre Jolivet SNES snes; 170138cfc46eSPierre Jolivet Mat pJ; 170238cfc46eSPierre Jolivet DM ovldm, origdm; 170338cfc46eSPierre Jolivet DMSNES sdm; 170438cfc46eSPierre Jolivet PetscErrorCode (*bfun)(DM, Vec, void *); 170538cfc46eSPierre Jolivet PetscErrorCode (*jfun)(DM, Vec, Mat, Mat, void *); 170638cfc46eSPierre Jolivet void *bctx, *jctx; 170738cfc46eSPierre Jolivet 170838cfc46eSPierre Jolivet PetscFunctionBegin; 17099566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)ovl, "_DM_Overlap_HPDDM_MATIS", (PetscObject *)&pJ)); 171028b400f6SJacob Faibussowitsch PetscCheck(pJ, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing overlapping Mat"); 17119566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)ovl, "_DM_Original_HPDDM", (PetscObject *)&origdm)); 171228b400f6SJacob Faibussowitsch PetscCheck(origdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing original DM"); 17139566063dSJacob Faibussowitsch PetscCall(MatGetDM(pJ, &ovldm)); 17149566063dSJacob Faibussowitsch PetscCall(DMSNESGetBoundaryLocal(origdm, &bfun, &bctx)); 17159566063dSJacob Faibussowitsch PetscCall(DMSNESSetBoundaryLocal(ovldm, bfun, bctx)); 17169566063dSJacob Faibussowitsch PetscCall(DMSNESGetJacobianLocal(origdm, &jfun, &jctx)); 17179566063dSJacob Faibussowitsch PetscCall(DMSNESSetJacobianLocal(ovldm, jfun, jctx)); 17189566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)ovl, "_DM_Overlap_HPDDM_SNES", (PetscObject *)&snes)); 171938cfc46eSPierre Jolivet if (!snes) { 17209566063dSJacob Faibussowitsch PetscCall(SNESCreate(PetscObjectComm((PetscObject)ovl), &snes)); 17219566063dSJacob Faibussowitsch PetscCall(SNESSetDM(snes, ovldm)); 17229566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)ovl, "_DM_Overlap_HPDDM_SNES", (PetscObject)snes)); 17239566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)snes)); 172438cfc46eSPierre Jolivet } 17259566063dSJacob Faibussowitsch PetscCall(DMGetDMSNES(ovldm, &sdm)); 17269566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(X)); 1727800f99ffSJeremy L Thompson { 1728800f99ffSJeremy L Thompson void *ctx; 1729800f99ffSJeremy L Thompson PetscErrorCode (*J)(SNES, Vec, Mat, Mat, void *); 1730800f99ffSJeremy L Thompson PetscCall(DMSNESGetJacobian(ovldm, &J, &ctx)); 1731800f99ffSJeremy L Thompson PetscCallBack("SNES callback Jacobian", (*J)(snes, X, pJ, pJ, ctx)); 1732800f99ffSJeremy L Thompson } 17339566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(X)); 173438cfc46eSPierre Jolivet /* this is a no-hop, just in case we decide to change the placeholder for the local Neumann matrix */ 173538cfc46eSPierre Jolivet { 173638cfc46eSPierre Jolivet Mat locpJ; 173738cfc46eSPierre Jolivet 17389566063dSJacob Faibussowitsch PetscCall(MatISGetLocalMat(pJ, &locpJ)); 17399566063dSJacob Faibussowitsch PetscCall(MatCopy(locpJ, J, SAME_NONZERO_PATTERN)); 174038cfc46eSPierre Jolivet } 17413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 174238cfc46eSPierre Jolivet } 174338cfc46eSPierre Jolivet 1744a925c78cSMatthew G. Knepley /*@ 1745*6493148fSStefano Zampini DMPlexSetSNESLocalFEM - Use `DMPLEX`'s internal FEM routines to compute `SNES` boundary values, objective, residual, and Jacobian. 17469f520fc2SToby Isaac 17479f520fc2SToby Isaac Input Parameters: 1748f6dfbefdSBarry Smith + dm - The `DM` object 1749*6493148fSStefano Zampini . use_obj - Use the objective function callback 1750*6493148fSStefano Zampini - ctx - The user context that will be passed to pointwise evaluation routines 17511a244344SSatish Balay 17521a244344SSatish Balay Level: developer 1753f6dfbefdSBarry Smith 1754*6493148fSStefano Zampini .seealso: [](ch_snes),`DMPLEX`, `SNES`, `PetscDSAddBoundary()`, `PetscDSSetObjective()`, `PetscDSSetResidual()`, `PetscDSSetJacobian()` 17559f520fc2SToby Isaac @*/ 1756*6493148fSStefano Zampini PetscErrorCode DMPlexSetSNESLocalFEM(DM dm, PetscBool use_obj, void *ctx) 1757d71ae5a4SJacob Faibussowitsch { 1758d2b2dc1eSMatthew G. Knepley PetscBool useCeed; 1759d2b2dc1eSMatthew G. Knepley 17609f520fc2SToby Isaac PetscFunctionBegin; 1761d2b2dc1eSMatthew G. Knepley PetscCall(DMPlexGetUseCeed(dm, &useCeed)); 1762*6493148fSStefano Zampini PetscCall(DMSNESSetBoundaryLocal(dm, DMPlexSNESComputeBoundaryFEM, ctx)); 1763*6493148fSStefano Zampini if (use_obj) PetscCall(DMSNESSetObjectiveLocal(dm, DMPlexSNESComputeObjectiveFEM, ctx)); 1764d2b2dc1eSMatthew G. Knepley if (useCeed) { 1765d2b2dc1eSMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 1766*6493148fSStefano Zampini PetscCall(DMSNESSetFunctionLocal(dm, DMPlexSNESComputeResidualCEED, ctx)); 1767d2b2dc1eSMatthew G. Knepley #else 1768d2b2dc1eSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Cannot use CEED traversals without LibCEED. Rerun configure with --download-ceed"); 1769d2b2dc1eSMatthew G. Knepley #endif 1770*6493148fSStefano Zampini } else PetscCall(DMSNESSetFunctionLocal(dm, DMPlexSNESComputeResidualFEM, ctx)); 1771*6493148fSStefano Zampini PetscCall(DMSNESSetJacobianLocal(dm, DMPlexSNESComputeJacobianFEM, ctx)); 17729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm, "MatComputeNeumannOverlap_C", MatComputeNeumannOverlap_Plex)); 17733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17749f520fc2SToby Isaac } 17759f520fc2SToby Isaac 1776f017bcb6SMatthew G. Knepley /*@C 1777f017bcb6SMatthew G. Knepley DMSNESCheckDiscretization - Check the discretization error of the exact solution 1778f017bcb6SMatthew G. Knepley 1779f017bcb6SMatthew G. Knepley Input Parameters: 1780f6dfbefdSBarry Smith + snes - the `SNES` object 1781f6dfbefdSBarry Smith . dm - the `DM` 1782f2cacb80SMatthew G. Knepley . t - the time 1783f6dfbefdSBarry Smith . u - a `DM` vector 1784f0fc11ceSJed Brown - tol - A tolerance for the check, or -1 to print the results instead 1785f017bcb6SMatthew G. Knepley 17862fe279fdSBarry Smith Output Parameter: 17872fe279fdSBarry Smith . error - An array which holds the discretization error in each field, or `NULL` 17882fe279fdSBarry Smith 17892fe279fdSBarry Smith Level: developer 1790f3c94560SMatthew G. Knepley 1791f6dfbefdSBarry Smith Note: 1792f6dfbefdSBarry Smith The user must call `PetscDSSetExactSolution()` beforehand 17937f96f943SMatthew G. Knepley 1794420bcc1bSBarry Smith Developer Note: 1795420bcc1bSBarry Smith How is this related to `PetscConvEst`? 1796420bcc1bSBarry Smith 1797420bcc1bSBarry Smith .seealso: [](ch_snes), `PetscDSSetExactSolution()`, `DNSNESCheckFromOptions()`, `DMSNESCheckResidual()`, `DMSNESCheckJacobian()` 1798f017bcb6SMatthew G. Knepley @*/ 1799d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCheckDiscretization(SNES snes, DM dm, PetscReal t, Vec u, PetscReal tol, PetscReal error[]) 1800d71ae5a4SJacob Faibussowitsch { 1801f017bcb6SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 1802f017bcb6SMatthew G. Knepley void **ectxs; 1803f3c94560SMatthew G. Knepley PetscReal *err; 18047f96f943SMatthew G. Knepley MPI_Comm comm; 18057f96f943SMatthew G. Knepley PetscInt Nf, f; 18061878804aSMatthew G. Knepley 18071878804aSMatthew G. Knepley PetscFunctionBegin; 1808f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(snes, SNES_CLASSID, 1); 1809f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 1810064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(u, VEC_CLASSID, 4); 18114f572ea9SToby Isaac if (error) PetscAssertPointer(error, 6); 18127f96f943SMatthew G. Knepley 18139566063dSJacob Faibussowitsch PetscCall(DMComputeExactSolution(dm, t, u, NULL)); 18149566063dSJacob Faibussowitsch PetscCall(VecViewFromOptions(u, NULL, "-vec_view")); 18157f96f943SMatthew G. Knepley 18169566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)snes, &comm)); 18179566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 18189566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(Nf, &exacts, Nf, &ectxs, PetscMax(1, Nf), &err)); 18197f96f943SMatthew G. Knepley { 18207f96f943SMatthew G. Knepley PetscInt Nds, s; 18217f96f943SMatthew G. Knepley 18229566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 1823083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 18247f96f943SMatthew G. Knepley PetscDS ds; 1825083401c6SMatthew G. Knepley DMLabel label; 1826083401c6SMatthew G. Knepley IS fieldIS; 18277f96f943SMatthew G. Knepley const PetscInt *fields; 18287f96f943SMatthew G. Knepley PetscInt dsNf, f; 1829083401c6SMatthew G. Knepley 183007218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 18319566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 18329566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 1833083401c6SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 1834083401c6SMatthew G. Knepley const PetscInt field = fields[f]; 18359566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exacts[field], &ectxs[field])); 1836083401c6SMatthew G. Knepley } 18379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 1838083401c6SMatthew G. Knepley } 1839083401c6SMatthew G. Knepley } 1840f017bcb6SMatthew G. Knepley if (Nf > 1) { 18419566063dSJacob Faibussowitsch PetscCall(DMComputeL2FieldDiff(dm, t, exacts, ectxs, u, err)); 1842f017bcb6SMatthew G. Knepley if (tol >= 0.0) { 1843ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(err[f] <= tol, comm, PETSC_ERR_ARG_WRONG, "L_2 Error %g for field %" PetscInt_FMT " exceeds tolerance %g", (double)err[f], f, (double)tol); 1844b878532fSMatthew G. Knepley } else if (error) { 1845b878532fSMatthew G. Knepley for (f = 0; f < Nf; ++f) error[f] = err[f]; 18461878804aSMatthew G. Knepley } else { 18479566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "L_2 Error: [")); 1848f017bcb6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 18499566063dSJacob Faibussowitsch if (f) PetscCall(PetscPrintf(comm, ", ")); 18509566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "%g", (double)err[f])); 18511878804aSMatthew G. Knepley } 18529566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "]\n")); 1853f017bcb6SMatthew G. Knepley } 1854f017bcb6SMatthew G. Knepley } else { 18559566063dSJacob Faibussowitsch PetscCall(DMComputeL2Diff(dm, t, exacts, ectxs, u, &err[0])); 1856f017bcb6SMatthew G. Knepley if (tol >= 0.0) { 185708401ef6SPierre Jolivet PetscCheck(err[0] <= tol, comm, PETSC_ERR_ARG_WRONG, "L_2 Error %g exceeds tolerance %g", (double)err[0], (double)tol); 1858b878532fSMatthew G. Knepley } else if (error) { 1859b878532fSMatthew G. Knepley error[0] = err[0]; 1860f017bcb6SMatthew G. Knepley } else { 18619566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "L_2 Error: %g\n", (double)err[0])); 1862f017bcb6SMatthew G. Knepley } 1863f017bcb6SMatthew G. Knepley } 18649566063dSJacob Faibussowitsch PetscCall(PetscFree3(exacts, ectxs, err)); 18653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1866f017bcb6SMatthew G. Knepley } 1867f017bcb6SMatthew G. Knepley 1868f017bcb6SMatthew G. Knepley /*@C 1869f017bcb6SMatthew G. Knepley DMSNESCheckResidual - Check the residual of the exact solution 1870f017bcb6SMatthew G. Knepley 1871f017bcb6SMatthew G. Knepley Input Parameters: 1872f6dfbefdSBarry Smith + snes - the `SNES` object 1873f6dfbefdSBarry Smith . dm - the `DM` 1874f6dfbefdSBarry Smith . u - a `DM` vector 1875f0fc11ceSJed Brown - tol - A tolerance for the check, or -1 to print the results instead 1876f017bcb6SMatthew G. Knepley 1877f6dfbefdSBarry Smith Output Parameter: 18782fe279fdSBarry Smith . residual - The residual norm of the exact solution, or `NULL` 1879f3c94560SMatthew G. Knepley 1880f017bcb6SMatthew G. Knepley Level: developer 1881f017bcb6SMatthew G. Knepley 1882420bcc1bSBarry Smith .seealso: [](ch_snes), `DNSNESCheckFromOptions()`, `DMSNESCheckDiscretization()`, `DMSNESCheckJacobian()` 1883f017bcb6SMatthew G. Knepley @*/ 1884d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCheckResidual(SNES snes, DM dm, Vec u, PetscReal tol, PetscReal *residual) 1885d71ae5a4SJacob Faibussowitsch { 1886f017bcb6SMatthew G. Knepley MPI_Comm comm; 1887f017bcb6SMatthew G. Knepley Vec r; 1888f017bcb6SMatthew G. Knepley PetscReal res; 1889f017bcb6SMatthew G. Knepley 1890f017bcb6SMatthew G. Knepley PetscFunctionBegin; 1891f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(snes, SNES_CLASSID, 1); 1892f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 1893f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 18944f572ea9SToby Isaac if (residual) PetscAssertPointer(residual, 5); 18959566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)snes, &comm)); 18969566063dSJacob Faibussowitsch PetscCall(DMComputeExactSolution(dm, 0.0, u, NULL)); 18979566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &r)); 18989566063dSJacob Faibussowitsch PetscCall(SNESComputeFunction(snes, u, r)); 18999566063dSJacob Faibussowitsch PetscCall(VecNorm(r, NORM_2, &res)); 1900f017bcb6SMatthew G. Knepley if (tol >= 0.0) { 190108401ef6SPierre Jolivet PetscCheck(res <= tol, comm, PETSC_ERR_ARG_WRONG, "L_2 Residual %g exceeds tolerance %g", (double)res, (double)tol); 1902b878532fSMatthew G. Knepley } else if (residual) { 1903b878532fSMatthew G. Knepley *residual = res; 1904f017bcb6SMatthew G. Knepley } else { 19059566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "L_2 Residual: %g\n", (double)res)); 190693ec0da9SPierre Jolivet PetscCall(VecFilter(r, 1.0e-10)); 19079566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)r, "Initial Residual")); 19089566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)r, "res_")); 19099566063dSJacob Faibussowitsch PetscCall(VecViewFromOptions(r, NULL, "-vec_view")); 1910f017bcb6SMatthew G. Knepley } 19119566063dSJacob Faibussowitsch PetscCall(VecDestroy(&r)); 19123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1913f017bcb6SMatthew G. Knepley } 1914f017bcb6SMatthew G. Knepley 1915f017bcb6SMatthew G. Knepley /*@C 1916f3c94560SMatthew G. Knepley DMSNESCheckJacobian - Check the Jacobian of the exact solution against the residual using the Taylor Test 1917f017bcb6SMatthew G. Knepley 1918f017bcb6SMatthew G. Knepley Input Parameters: 1919f6dfbefdSBarry Smith + snes - the `SNES` object 1920f6dfbefdSBarry Smith . dm - the `DM` 1921f6dfbefdSBarry Smith . u - a `DM` vector 1922f0fc11ceSJed Brown - tol - A tolerance for the check, or -1 to print the results instead 1923f017bcb6SMatthew G. Knepley 1924f3c94560SMatthew G. Knepley Output Parameters: 19252fe279fdSBarry Smith + isLinear - Flag indicaing that the function looks linear, or `NULL` 19262fe279fdSBarry Smith - convRate - The rate of convergence of the linear model, or `NULL` 1927f3c94560SMatthew G. Knepley 1928f017bcb6SMatthew G. Knepley Level: developer 1929f017bcb6SMatthew G. Knepley 1930420bcc1bSBarry Smith .seealso: [](ch_snes), `DNSNESCheckFromOptions()`, `DMSNESCheckDiscretization()`, `DMSNESCheckResidual()` 1931f017bcb6SMatthew G. Knepley @*/ 1932d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCheckJacobian(SNES snes, DM dm, Vec u, PetscReal tol, PetscBool *isLinear, PetscReal *convRate) 1933d71ae5a4SJacob Faibussowitsch { 1934f017bcb6SMatthew G. Knepley MPI_Comm comm; 1935f017bcb6SMatthew G. Knepley PetscDS ds; 1936f017bcb6SMatthew G. Knepley Mat J, M; 1937f017bcb6SMatthew G. Knepley MatNullSpace nullspace; 1938f3c94560SMatthew G. Knepley PetscReal slope, intercept; 19397f96f943SMatthew G. Knepley PetscBool hasJac, hasPrec, isLin = PETSC_FALSE; 1940f017bcb6SMatthew G. Knepley 1941f017bcb6SMatthew G. Knepley PetscFunctionBegin; 1942f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(snes, SNES_CLASSID, 1); 1943d5d53b22SStefano Zampini if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 1944d5d53b22SStefano Zampini if (u) PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 19454f572ea9SToby Isaac if (isLinear) PetscAssertPointer(isLinear, 5); 19464f572ea9SToby Isaac if (convRate) PetscAssertPointer(convRate, 6); 19479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)snes, &comm)); 1948d5d53b22SStefano Zampini if (!dm) PetscCall(SNESGetDM(snes, &dm)); 1949d5d53b22SStefano Zampini if (u) PetscCall(DMComputeExactSolution(dm, 0.0, u, NULL)); 1950d5d53b22SStefano Zampini else PetscCall(SNESGetSolution(snes, &u)); 1951f017bcb6SMatthew G. Knepley /* Create and view matrices */ 19529566063dSJacob Faibussowitsch PetscCall(DMCreateMatrix(dm, &J)); 19539566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 19549566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(ds, &hasJac)); 19559566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(ds, &hasPrec)); 1956282e7bb4SMatthew G. Knepley if (hasJac && hasPrec) { 19579566063dSJacob Faibussowitsch PetscCall(DMCreateMatrix(dm, &M)); 19589566063dSJacob Faibussowitsch PetscCall(SNESComputeJacobian(snes, u, J, M)); 19599566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)M, "Preconditioning Matrix")); 19609566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)M, "jacpre_")); 19619566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(M, NULL, "-mat_view")); 19629566063dSJacob Faibussowitsch PetscCall(MatDestroy(&M)); 1963282e7bb4SMatthew G. Knepley } else { 19649566063dSJacob Faibussowitsch PetscCall(SNESComputeJacobian(snes, u, J, J)); 1965282e7bb4SMatthew G. Knepley } 19669566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)J, "Jacobian")); 19679566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)J, "jac_")); 19689566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(J, NULL, "-mat_view")); 1969f017bcb6SMatthew G. Knepley /* Check nullspace */ 19709566063dSJacob Faibussowitsch PetscCall(MatGetNullSpace(J, &nullspace)); 1971f017bcb6SMatthew G. Knepley if (nullspace) { 19721878804aSMatthew G. Knepley PetscBool isNull; 19739566063dSJacob Faibussowitsch PetscCall(MatNullSpaceTest(nullspace, J, &isNull)); 197428b400f6SJacob Faibussowitsch PetscCheck(isNull, comm, PETSC_ERR_PLIB, "The null space calculated for the system operator is invalid."); 19751878804aSMatthew G. Knepley } 1976f017bcb6SMatthew G. Knepley /* Taylor test */ 1977f017bcb6SMatthew G. Knepley { 1978f017bcb6SMatthew G. Knepley PetscRandom rand; 1979f017bcb6SMatthew G. Knepley Vec du, uhat, r, rhat, df; 1980f3c94560SMatthew G. Knepley PetscReal h; 1981f017bcb6SMatthew G. Knepley PetscReal *es, *hs, *errors; 1982f017bcb6SMatthew G. Knepley PetscReal hMax = 1.0, hMin = 1e-6, hMult = 0.1; 1983f017bcb6SMatthew G. Knepley PetscInt Nv, v; 1984f017bcb6SMatthew G. Knepley 1985f017bcb6SMatthew G. Knepley /* Choose a perturbation direction */ 19869566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(comm, &rand)); 19879566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &du)); 19889566063dSJacob Faibussowitsch PetscCall(VecSetRandom(du, rand)); 19899566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&rand)); 19909566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &df)); 19919566063dSJacob Faibussowitsch PetscCall(MatMult(J, du, df)); 1992f017bcb6SMatthew G. Knepley /* Evaluate residual at u, F(u), save in vector r */ 19939566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &r)); 19949566063dSJacob Faibussowitsch PetscCall(SNESComputeFunction(snes, u, r)); 1995f017bcb6SMatthew G. Knepley /* Look at the convergence of our Taylor approximation as we approach u */ 19969371c9d4SSatish Balay for (h = hMax, Nv = 0; h >= hMin; h *= hMult, ++Nv) 19979371c9d4SSatish Balay ; 19989566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(Nv, &es, Nv, &hs, Nv, &errors)); 19999566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &uhat)); 20009566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &rhat)); 2001f017bcb6SMatthew G. Knepley for (h = hMax, Nv = 0; h >= hMin; h *= hMult, ++Nv) { 20029566063dSJacob Faibussowitsch PetscCall(VecWAXPY(uhat, h, du, u)); 2003f017bcb6SMatthew G. Knepley /* F(\hat u) \approx F(u) + J(u) (uhat - u) = F(u) + h * J(u) du */ 20049566063dSJacob Faibussowitsch PetscCall(SNESComputeFunction(snes, uhat, rhat)); 20059566063dSJacob Faibussowitsch PetscCall(VecAXPBYPCZ(rhat, -1.0, -h, 1.0, r, df)); 20069566063dSJacob Faibussowitsch PetscCall(VecNorm(rhat, NORM_2, &errors[Nv])); 2007f017bcb6SMatthew G. Knepley 200838d69901SMatthew G. Knepley es[Nv] = errors[Nv] == 0 ? -16.0 : PetscLog10Real(errors[Nv]); 2009f017bcb6SMatthew G. Knepley hs[Nv] = PetscLog10Real(h); 2010f017bcb6SMatthew G. Knepley } 20119566063dSJacob Faibussowitsch PetscCall(VecDestroy(&uhat)); 20129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&rhat)); 20139566063dSJacob Faibussowitsch PetscCall(VecDestroy(&df)); 20149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&r)); 20159566063dSJacob Faibussowitsch PetscCall(VecDestroy(&du)); 2016f017bcb6SMatthew G. Knepley for (v = 0; v < Nv; ++v) { 2017f017bcb6SMatthew G. Knepley if ((tol >= 0) && (errors[v] > tol)) break; 2018f017bcb6SMatthew G. Knepley else if (errors[v] > PETSC_SMALL) break; 2019f017bcb6SMatthew G. Knepley } 2020f3c94560SMatthew G. Knepley if (v == Nv) isLin = PETSC_TRUE; 20219566063dSJacob Faibussowitsch PetscCall(PetscLinearRegression(Nv, hs, es, &slope, &intercept)); 20229566063dSJacob Faibussowitsch PetscCall(PetscFree3(es, hs, errors)); 2023f017bcb6SMatthew G. Knepley /* Slope should be about 2 */ 2024f017bcb6SMatthew G. Knepley if (tol >= 0) { 20250b121fc5SBarry Smith PetscCheck(isLin || PetscAbsReal(2 - slope) <= tol, comm, PETSC_ERR_ARG_WRONG, "Taylor approximation convergence rate should be 2, not %0.2f", (double)slope); 2026b878532fSMatthew G. Knepley } else if (isLinear || convRate) { 2027b878532fSMatthew G. Knepley if (isLinear) *isLinear = isLin; 2028b878532fSMatthew G. Knepley if (convRate) *convRate = slope; 2029f017bcb6SMatthew G. Knepley } else { 20309566063dSJacob Faibussowitsch if (!isLin) PetscCall(PetscPrintf(comm, "Taylor approximation converging at order %3.2f\n", (double)slope)); 20319566063dSJacob Faibussowitsch else PetscCall(PetscPrintf(comm, "Function appears to be linear\n")); 2032f017bcb6SMatthew G. Knepley } 2033f017bcb6SMatthew G. Knepley } 20349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&J)); 20353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20361878804aSMatthew G. Knepley } 20371878804aSMatthew G. Knepley 2038d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCheck_Internal(SNES snes, DM dm, Vec u) 2039d71ae5a4SJacob Faibussowitsch { 2040f017bcb6SMatthew G. Knepley PetscFunctionBegin; 20419566063dSJacob Faibussowitsch PetscCall(DMSNESCheckDiscretization(snes, dm, 0.0, u, -1.0, NULL)); 20429566063dSJacob Faibussowitsch PetscCall(DMSNESCheckResidual(snes, dm, u, -1.0, NULL)); 20439566063dSJacob Faibussowitsch PetscCall(DMSNESCheckJacobian(snes, dm, u, -1.0, NULL, NULL)); 20443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2045f017bcb6SMatthew G. Knepley } 2046f017bcb6SMatthew G. Knepley 2047bee9a294SMatthew G. Knepley /*@C 2048bee9a294SMatthew G. Knepley DMSNESCheckFromOptions - Check the residual and Jacobian functions using the exact solution by outputting some diagnostic information 2049bee9a294SMatthew G. Knepley 2050bee9a294SMatthew G. Knepley Input Parameters: 2051f6dfbefdSBarry Smith + snes - the `SNES` object 2052f6dfbefdSBarry Smith - u - representative `SNES` vector 20537f96f943SMatthew G. Knepley 20542fe279fdSBarry Smith Level: developer 20552fe279fdSBarry Smith 2056f6dfbefdSBarry Smith Note: 2057420bcc1bSBarry Smith The user must call `PetscDSSetExactSolution()` before this call 2058bee9a294SMatthew G. Knepley 2059420bcc1bSBarry Smith .seealso: [](ch_snes), `SNES`, `DM` 2060bee9a294SMatthew G. Knepley @*/ 2061d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCheckFromOptions(SNES snes, Vec u) 2062d71ae5a4SJacob Faibussowitsch { 20631878804aSMatthew G. Knepley DM dm; 20641878804aSMatthew G. Knepley Vec sol; 20651878804aSMatthew G. Knepley PetscBool check; 20661878804aSMatthew G. Knepley 20671878804aSMatthew G. Knepley PetscFunctionBegin; 20689566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)snes)->options, ((PetscObject)snes)->prefix, "-dmsnes_check", &check)); 20693ba16761SJacob Faibussowitsch if (!check) PetscFunctionReturn(PETSC_SUCCESS); 20709566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 20719566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &sol)); 20729566063dSJacob Faibussowitsch PetscCall(SNESSetSolution(snes, sol)); 20739566063dSJacob Faibussowitsch PetscCall(DMSNESCheck_Internal(snes, dm, sol)); 20749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sol)); 20753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2076552f7358SJed Brown } 2077