1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/snesimpl.h> /*I "petscsnes.h" I*/ 324cdb843SMatthew G. Knepley #include <petscds.h> 4af0996ceSBarry Smith #include <petsc/private/petscimpl.h> 5af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 6552f7358SJed Brown 7d2b2dc1eSMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 8d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 9d2b2dc1eSMatthew G. Knepley #include <petscdmplexceed.h> 10d2b2dc1eSMatthew G. Knepley #endif 11d2b2dc1eSMatthew G. Knepley 12d71ae5a4SJacob Faibussowitsch static void pressure_Private(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar p[]) 13d71ae5a4SJacob Faibussowitsch { 14649ef022SMatthew Knepley p[0] = u[uOff[1]]; 15649ef022SMatthew Knepley } 16649ef022SMatthew Knepley 17649ef022SMatthew Knepley /* 1820f4b53cSBarry Smith SNESCorrectDiscretePressure_Private - Add a vector in the nullspace to make the continuum integral of the pressure field equal to zero. 1920f4b53cSBarry Smith This is normally used only to evaluate convergence rates for the pressure accurately. 20649ef022SMatthew Knepley 21c3339decSBarry Smith Collective 22649ef022SMatthew Knepley 23649ef022SMatthew Knepley Input Parameters: 24649ef022SMatthew Knepley + snes - The SNES 25649ef022SMatthew Knepley . pfield - The field number for pressure 26649ef022SMatthew Knepley . nullspace - The pressure nullspace 27649ef022SMatthew Knepley . u - The solution vector 28649ef022SMatthew Knepley - ctx - An optional user context 29649ef022SMatthew Knepley 30649ef022SMatthew Knepley Output Parameter: 31649ef022SMatthew Knepley . u - The solution with a continuum pressure integral of zero 32649ef022SMatthew Knepley 332fe279fdSBarry Smith Level: developer 342fe279fdSBarry Smith 35649ef022SMatthew Knepley Notes: 36649ef022SMatthew Knepley If int(u) = a and int(n) = b, then int(u - a/b n) = a - a/b b = 0. We assume that the nullspace is a single vector given explicitly. 37649ef022SMatthew Knepley 38db781477SPatrick Sanan .seealso: `SNESConvergedCorrectPressure()` 39649ef022SMatthew Knepley */ 40d71ae5a4SJacob Faibussowitsch static PetscErrorCode SNESCorrectDiscretePressure_Private(SNES snes, PetscInt pfield, MatNullSpace nullspace, Vec u, void *ctx) 41d71ae5a4SJacob Faibussowitsch { 42649ef022SMatthew Knepley DM dm; 43649ef022SMatthew Knepley PetscDS ds; 44649ef022SMatthew Knepley const Vec *nullvecs; 45649ef022SMatthew Knepley PetscScalar pintd, *intc, *intn; 46649ef022SMatthew Knepley MPI_Comm comm; 47649ef022SMatthew Knepley PetscInt Nf, Nv; 48649ef022SMatthew Knepley 49649ef022SMatthew Knepley PetscFunctionBegin; 509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)snes, &comm)); 519566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 5228b400f6SJacob Faibussowitsch PetscCheck(dm, comm, PETSC_ERR_ARG_WRONG, "Cannot compute test without a SNES DM"); 5328b400f6SJacob Faibussowitsch PetscCheck(nullspace, comm, PETSC_ERR_ARG_WRONG, "Cannot compute test without a Jacobian nullspace"); 549566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 559566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(ds, pfield, pressure_Private)); 569566063dSJacob Faibussowitsch PetscCall(MatNullSpaceGetVecs(nullspace, NULL, &Nv, &nullvecs)); 5763a3b9bcSJacob Faibussowitsch PetscCheck(Nv == 1, comm, PETSC_ERR_ARG_OUTOFRANGE, "Can only handle a single null vector for pressure, not %" PetscInt_FMT, Nv); 589566063dSJacob Faibussowitsch PetscCall(VecDot(nullvecs[0], u, &pintd)); 5908401ef6SPierre Jolivet PetscCheck(PetscAbsScalar(pintd) <= PETSC_SMALL, comm, PETSC_ERR_ARG_WRONG, "Discrete integral of pressure: %g", (double)PetscRealPart(pintd)); 609566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 619566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &intc, Nf, &intn)); 629566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, nullvecs[0], intn, ctx)); 639566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, u, intc, ctx)); 649566063dSJacob Faibussowitsch PetscCall(VecAXPY(u, -intc[pfield] / intn[pfield], nullvecs[0])); 65649ef022SMatthew Knepley #if defined(PETSC_USE_DEBUG) 669566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, u, intc, ctx)); 6708401ef6SPierre Jolivet PetscCheck(PetscAbsScalar(intc[pfield]) <= PETSC_SMALL, comm, PETSC_ERR_ARG_WRONG, "Continuum integral of pressure after correction: %g", (double)PetscRealPart(intc[pfield])); 68649ef022SMatthew Knepley #endif 699566063dSJacob Faibussowitsch PetscCall(PetscFree2(intc, intn)); 703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71649ef022SMatthew Knepley } 72649ef022SMatthew Knepley 73649ef022SMatthew Knepley /*@C 74ceaaa498SBarry Smith SNESConvergedCorrectPressure - The regular `SNES` convergence test that, up on convergence, adds a vector in the nullspace 75ceaaa498SBarry Smith to make the continuum integral of the pressure field equal to zero. 76649ef022SMatthew Knepley 77c3339decSBarry Smith Logically Collective 78649ef022SMatthew Knepley 79649ef022SMatthew Knepley Input Parameters: 80f6dfbefdSBarry Smith + snes - the `SNES` context 81649ef022SMatthew Knepley . it - the iteration (0 indicates before any Newton steps) 82649ef022SMatthew Knepley . xnorm - 2-norm of current iterate 83e4094ef1SJacob Faibussowitsch . gnorm - 2-norm of current step 84e4094ef1SJacob Faibussowitsch . f - 2-norm of function at current iterate 85649ef022SMatthew Knepley - ctx - Optional user context 86649ef022SMatthew Knepley 87649ef022SMatthew Knepley Output Parameter: 88f6dfbefdSBarry Smith . reason - `SNES_CONVERGED_ITERATING`, `SNES_CONVERGED_ITS`, or `SNES_DIVERGED_FNORM_NAN` 89649ef022SMatthew Knepley 9020f4b53cSBarry Smith Options Database Key: 9120f4b53cSBarry Smith . -snes_convergence_test correct_pressure - see `SNESSetFromOptions()` 9220f4b53cSBarry Smith 9320f4b53cSBarry Smith Level: advanced 9420f4b53cSBarry Smith 95649ef022SMatthew Knepley Notes: 96f6dfbefdSBarry Smith In order to use this convergence test, you must set up several PETSc structures. First fields must be added to the `DM`, and a `PetscDS` 97f6dfbefdSBarry Smith must be created with discretizations of those fields. We currently assume that the pressure field has index 1. 98f6dfbefdSBarry Smith The pressure field must have a nullspace, likely created using the `DMSetNullSpaceConstructor()` interface. 99f6dfbefdSBarry Smith Last we must be able to integrate the pressure over the domain, so the `DM` attached to the SNES `must` be a `DMPLEX` at this time. 100f362779dSJed Brown 101ceaaa498SBarry Smith Developer Note: 102ceaaa498SBarry Smith This is a total misuse of the `SNES` convergence test handling system. It should be removed. Perhaps a `SNESSetPostSolve()` could 103ceaaa498SBarry Smith be constructed to handle this process. 104ceaaa498SBarry Smith 105e4094ef1SJacob Faibussowitsch .seealso: `SNES`, `DM`, `SNESConvergedDefault()`, `SNESSetConvergenceTest()`, `DMSetNullSpaceConstructor()` 106649ef022SMatthew Knepley @*/ 107d71ae5a4SJacob Faibussowitsch PetscErrorCode SNESConvergedCorrectPressure(SNES snes, PetscInt it, PetscReal xnorm, PetscReal gnorm, PetscReal f, SNESConvergedReason *reason, void *ctx) 108d71ae5a4SJacob Faibussowitsch { 109649ef022SMatthew Knepley PetscBool monitorIntegral = PETSC_FALSE; 110649ef022SMatthew Knepley 111649ef022SMatthew Knepley PetscFunctionBegin; 1129566063dSJacob Faibussowitsch PetscCall(SNESConvergedDefault(snes, it, xnorm, gnorm, f, reason, ctx)); 113649ef022SMatthew Knepley if (monitorIntegral) { 114649ef022SMatthew Knepley Mat J; 115649ef022SMatthew Knepley Vec u; 116649ef022SMatthew Knepley MatNullSpace nullspace; 117649ef022SMatthew Knepley const Vec *nullvecs; 118649ef022SMatthew Knepley PetscScalar pintd; 119649ef022SMatthew Knepley 1209566063dSJacob Faibussowitsch PetscCall(SNESGetSolution(snes, &u)); 1219566063dSJacob Faibussowitsch PetscCall(SNESGetJacobian(snes, &J, NULL, NULL, NULL)); 1229566063dSJacob Faibussowitsch PetscCall(MatGetNullSpace(J, &nullspace)); 1239566063dSJacob Faibussowitsch PetscCall(MatNullSpaceGetVecs(nullspace, NULL, NULL, &nullvecs)); 1249566063dSJacob Faibussowitsch PetscCall(VecDot(nullvecs[0], u, &pintd)); 1259566063dSJacob Faibussowitsch PetscCall(PetscInfo(snes, "SNES: Discrete integral of pressure: %g\n", (double)PetscRealPart(pintd))); 126649ef022SMatthew Knepley } 127649ef022SMatthew Knepley if (*reason > 0) { 128649ef022SMatthew Knepley Mat J; 129649ef022SMatthew Knepley Vec u; 130649ef022SMatthew Knepley MatNullSpace nullspace; 131649ef022SMatthew Knepley PetscInt pfield = 1; 132649ef022SMatthew Knepley 1339566063dSJacob Faibussowitsch PetscCall(SNESGetSolution(snes, &u)); 1349566063dSJacob Faibussowitsch PetscCall(SNESGetJacobian(snes, &J, NULL, NULL, NULL)); 1359566063dSJacob Faibussowitsch PetscCall(MatGetNullSpace(J, &nullspace)); 1369566063dSJacob Faibussowitsch PetscCall(SNESCorrectDiscretePressure_Private(snes, pfield, nullspace, u, ctx)); 137649ef022SMatthew Knepley } 1383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 139649ef022SMatthew Knepley } 140649ef022SMatthew Knepley 14124cdb843SMatthew G. Knepley /************************** Interpolation *******************************/ 14224cdb843SMatthew G. Knepley 143d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSNESConvertPlex(DM dm, DM *plex, PetscBool copy) 144d71ae5a4SJacob Faibussowitsch { 1456da023fcSToby Isaac PetscBool isPlex; 1466da023fcSToby Isaac 1476da023fcSToby Isaac PetscFunctionBegin; 1489566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 1496da023fcSToby Isaac if (isPlex) { 1506da023fcSToby Isaac *plex = dm; 1519566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 152f7148743SMatthew G. Knepley } else { 1539566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 154f7148743SMatthew G. Knepley if (!*plex) { 1559566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 1569566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 1576da023fcSToby Isaac if (copy) { 1589566063dSJacob Faibussowitsch PetscCall(DMCopyDMSNES(dm, *plex)); 1599566063dSJacob Faibussowitsch PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 1606da023fcSToby Isaac } 161f7148743SMatthew G. Knepley } else { 1629566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*plex)); 163f7148743SMatthew G. Knepley } 1646da023fcSToby Isaac } 1653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1666da023fcSToby Isaac } 1676da023fcSToby Isaac 1684267b1a3SMatthew G. Knepley /*@C 169f6dfbefdSBarry Smith DMInterpolationCreate - Creates a `DMInterpolationInfo` context 1704267b1a3SMatthew G. Knepley 171d083f849SBarry Smith Collective 1724267b1a3SMatthew G. Knepley 1734267b1a3SMatthew G. Knepley Input Parameter: 1744267b1a3SMatthew G. Knepley . comm - the communicator 1754267b1a3SMatthew G. Knepley 1764267b1a3SMatthew G. Knepley Output Parameter: 1774267b1a3SMatthew G. Knepley . ctx - the context 1784267b1a3SMatthew G. Knepley 1794267b1a3SMatthew G. Knepley Level: beginner 1804267b1a3SMatthew G. Knepley 181f6dfbefdSBarry Smith .seealso: `DMInterpolationInfo`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationDestroy()` 1824267b1a3SMatthew G. Knepley @*/ 183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationCreate(MPI_Comm comm, DMInterpolationInfo *ctx) 184d71ae5a4SJacob Faibussowitsch { 185552f7358SJed Brown PetscFunctionBegin; 1864f572ea9SToby Isaac PetscAssertPointer(ctx, 2); 1879566063dSJacob Faibussowitsch PetscCall(PetscNew(ctx)); 1881aa26658SKarl Rupp 189552f7358SJed Brown (*ctx)->comm = comm; 190552f7358SJed Brown (*ctx)->dim = -1; 191552f7358SJed Brown (*ctx)->nInput = 0; 1920298fd71SBarry Smith (*ctx)->points = NULL; 1930298fd71SBarry Smith (*ctx)->cells = NULL; 194552f7358SJed Brown (*ctx)->n = -1; 1950298fd71SBarry Smith (*ctx)->coords = NULL; 1963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 197552f7358SJed Brown } 198552f7358SJed Brown 1994267b1a3SMatthew G. Knepley /*@C 2004267b1a3SMatthew G. Knepley DMInterpolationSetDim - Sets the spatial dimension for the interpolation context 2014267b1a3SMatthew G. Knepley 20220f4b53cSBarry Smith Not Collective 2034267b1a3SMatthew G. Knepley 2044267b1a3SMatthew G. Knepley Input Parameters: 2054267b1a3SMatthew G. Knepley + ctx - the context 2064267b1a3SMatthew G. Knepley - dim - the spatial dimension 2074267b1a3SMatthew G. Knepley 2084267b1a3SMatthew G. Knepley Level: intermediate 2094267b1a3SMatthew G. Knepley 210f6dfbefdSBarry Smith .seealso: `DMInterpolationInfo`, `DMInterpolationGetDim()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()` 2114267b1a3SMatthew G. Knepley @*/ 212d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationSetDim(DMInterpolationInfo ctx, PetscInt dim) 213d71ae5a4SJacob Faibussowitsch { 214552f7358SJed Brown PetscFunctionBegin; 21563a3b9bcSJacob Faibussowitsch PetscCheck(!(dim < 1) && !(dim > 3), ctx->comm, PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension for points: %" PetscInt_FMT, dim); 216552f7358SJed Brown ctx->dim = dim; 2173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 218552f7358SJed Brown } 219552f7358SJed Brown 2204267b1a3SMatthew G. Knepley /*@C 2214267b1a3SMatthew G. Knepley DMInterpolationGetDim - Gets the spatial dimension for the interpolation context 2224267b1a3SMatthew G. Knepley 22320f4b53cSBarry Smith Not Collective 2244267b1a3SMatthew G. Knepley 2254267b1a3SMatthew G. Knepley Input Parameter: 2264267b1a3SMatthew G. Knepley . ctx - the context 2274267b1a3SMatthew G. Knepley 2284267b1a3SMatthew G. Knepley Output Parameter: 2294267b1a3SMatthew G. Knepley . dim - the spatial dimension 2304267b1a3SMatthew G. Knepley 2314267b1a3SMatthew G. Knepley Level: intermediate 2324267b1a3SMatthew G. Knepley 233f6dfbefdSBarry Smith .seealso: `DMInterpolationInfo`, `DMInterpolationSetDim()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()` 2344267b1a3SMatthew G. Knepley @*/ 235d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationGetDim(DMInterpolationInfo ctx, PetscInt *dim) 236d71ae5a4SJacob Faibussowitsch { 237552f7358SJed Brown PetscFunctionBegin; 2384f572ea9SToby Isaac PetscAssertPointer(dim, 2); 239552f7358SJed Brown *dim = ctx->dim; 2403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 241552f7358SJed Brown } 242552f7358SJed Brown 2434267b1a3SMatthew G. Knepley /*@C 2444267b1a3SMatthew G. Knepley DMInterpolationSetDof - Sets the number of fields interpolated at a point for the interpolation context 2454267b1a3SMatthew G. Knepley 24620f4b53cSBarry Smith Not Collective 2474267b1a3SMatthew G. Knepley 2484267b1a3SMatthew G. Knepley Input Parameters: 2494267b1a3SMatthew G. Knepley + ctx - the context 2504267b1a3SMatthew G. Knepley - dof - the number of fields 2514267b1a3SMatthew G. Knepley 2524267b1a3SMatthew G. Knepley Level: intermediate 2534267b1a3SMatthew G. Knepley 254f6dfbefdSBarry Smith .seealso: `DMInterpolationInfo`, `DMInterpolationGetDof()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()` 2554267b1a3SMatthew G. Knepley @*/ 256d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationSetDof(DMInterpolationInfo ctx, PetscInt dof) 257d71ae5a4SJacob Faibussowitsch { 258552f7358SJed Brown PetscFunctionBegin; 25963a3b9bcSJacob Faibussowitsch PetscCheck(dof >= 1, ctx->comm, PETSC_ERR_ARG_OUTOFRANGE, "Invalid number of components: %" PetscInt_FMT, dof); 260552f7358SJed Brown ctx->dof = dof; 2613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 262552f7358SJed Brown } 263552f7358SJed Brown 2644267b1a3SMatthew G. Knepley /*@C 2654267b1a3SMatthew G. Knepley DMInterpolationGetDof - Gets the number of fields interpolated at a point for the interpolation context 2664267b1a3SMatthew G. Knepley 26720f4b53cSBarry Smith Not Collective 2684267b1a3SMatthew G. Knepley 2694267b1a3SMatthew G. Knepley Input Parameter: 2704267b1a3SMatthew G. Knepley . ctx - the context 2714267b1a3SMatthew G. Knepley 2724267b1a3SMatthew G. Knepley Output Parameter: 2734267b1a3SMatthew G. Knepley . dof - the number of fields 2744267b1a3SMatthew G. Knepley 2754267b1a3SMatthew G. Knepley Level: intermediate 2764267b1a3SMatthew G. Knepley 277e4094ef1SJacob Faibussowitsch .seealso: `DMInterpolationInfo`, `DMInterpolationSetDof()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()` 2784267b1a3SMatthew G. Knepley @*/ 279d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationGetDof(DMInterpolationInfo ctx, PetscInt *dof) 280d71ae5a4SJacob Faibussowitsch { 281552f7358SJed Brown PetscFunctionBegin; 2824f572ea9SToby Isaac PetscAssertPointer(dof, 2); 283552f7358SJed Brown *dof = ctx->dof; 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 285552f7358SJed Brown } 286552f7358SJed Brown 2874267b1a3SMatthew G. Knepley /*@C 2884267b1a3SMatthew G. Knepley DMInterpolationAddPoints - Add points at which we will interpolate the fields 2894267b1a3SMatthew G. Knepley 29020f4b53cSBarry Smith Not Collective 2914267b1a3SMatthew G. Knepley 2924267b1a3SMatthew G. Knepley Input Parameters: 2934267b1a3SMatthew G. Knepley + ctx - the context 2944267b1a3SMatthew G. Knepley . n - the number of points 2954267b1a3SMatthew G. Knepley - points - the coordinates for each point, an array of size n * dim 2964267b1a3SMatthew G. Knepley 2972fe279fdSBarry Smith Level: intermediate 2982fe279fdSBarry Smith 299f6dfbefdSBarry Smith Note: 300f6dfbefdSBarry Smith The coordinate information is copied. 3014267b1a3SMatthew G. Knepley 302f6dfbefdSBarry Smith .seealso: `DMInterpolationInfo`, `DMInterpolationSetDim()`, `DMInterpolationEvaluate()`, `DMInterpolationCreate()` 3034267b1a3SMatthew G. Knepley @*/ 304d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationAddPoints(DMInterpolationInfo ctx, PetscInt n, PetscReal points[]) 305d71ae5a4SJacob Faibussowitsch { 306552f7358SJed Brown PetscFunctionBegin; 30708401ef6SPierre Jolivet PetscCheck(ctx->dim >= 0, ctx->comm, PETSC_ERR_ARG_WRONGSTATE, "The spatial dimension has not been set"); 30828b400f6SJacob Faibussowitsch PetscCheck(!ctx->points, ctx->comm, PETSC_ERR_ARG_WRONGSTATE, "Cannot add points multiple times yet"); 309552f7358SJed Brown ctx->nInput = n; 3101aa26658SKarl Rupp 3119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n * ctx->dim, &ctx->points)); 3129566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ctx->points, points, n * ctx->dim)); 3133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 314552f7358SJed Brown } 315552f7358SJed Brown 3164267b1a3SMatthew G. Knepley /*@C 31752aa1562SMatthew G. Knepley DMInterpolationSetUp - Compute spatial indices for point location during interpolation 3184267b1a3SMatthew G. Knepley 319c3339decSBarry Smith Collective 3204267b1a3SMatthew G. Knepley 3214267b1a3SMatthew G. Knepley Input Parameters: 3224267b1a3SMatthew G. Knepley + ctx - the context 323f6dfbefdSBarry Smith . dm - the `DM` for the function space used for interpolation 324f6dfbefdSBarry Smith . redundantPoints - If `PETSC_TRUE`, all processes are passing in the same array of points. Otherwise, points need to be communicated among processes. 325f6dfbefdSBarry Smith - ignoreOutsideDomain - If `PETSC_TRUE`, ignore points outside the domain, otherwise return an error 3264267b1a3SMatthew G. Knepley 3274267b1a3SMatthew G. Knepley Level: intermediate 3284267b1a3SMatthew G. Knepley 329e4094ef1SJacob Faibussowitsch .seealso: `DMInterpolationInfo`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 3304267b1a3SMatthew G. Knepley @*/ 331d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationSetUp(DMInterpolationInfo ctx, DM dm, PetscBool redundantPoints, PetscBool ignoreOutsideDomain) 332d71ae5a4SJacob Faibussowitsch { 333552f7358SJed Brown MPI_Comm comm = ctx->comm; 334552f7358SJed Brown PetscScalar *a; 335552f7358SJed Brown PetscInt p, q, i; 336552f7358SJed Brown PetscMPIInt rank, size; 337552f7358SJed Brown Vec pointVec; 3383a93e3b7SToby Isaac PetscSF cellSF; 339552f7358SJed Brown PetscLayout layout; 340552f7358SJed Brown PetscReal *globalPoints; 341cb313848SJed Brown PetscScalar *globalPointsScalar; 342552f7358SJed Brown const PetscInt *ranges; 343552f7358SJed Brown PetscMPIInt *counts, *displs; 3443a93e3b7SToby Isaac const PetscSFNode *foundCells; 3453a93e3b7SToby Isaac const PetscInt *foundPoints; 346552f7358SJed Brown PetscMPIInt *foundProcs, *globalProcs; 3473a93e3b7SToby Isaac PetscInt n, N, numFound; 348552f7358SJed Brown 34919436ca2SJed Brown PetscFunctionBegin; 350064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 35308401ef6SPierre Jolivet PetscCheck(ctx->dim >= 0, comm, PETSC_ERR_ARG_WRONGSTATE, "The spatial dimension has not been set"); 35419436ca2SJed Brown /* Locate points */ 35519436ca2SJed Brown n = ctx->nInput; 356552f7358SJed Brown if (!redundantPoints) { 3579566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 3589566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 3599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, n)); 3609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 3619566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetSize(layout, &N)); 362552f7358SJed Brown /* Communicate all points to all processes */ 3639566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(N * ctx->dim, &globalPoints, size, &counts, size, &displs)); 3649566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 365552f7358SJed Brown for (p = 0; p < size; ++p) { 366552f7358SJed Brown counts[p] = (ranges[p + 1] - ranges[p]) * ctx->dim; 367552f7358SJed Brown displs[p] = ranges[p] * ctx->dim; 368552f7358SJed Brown } 3699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(ctx->points, n * ctx->dim, MPIU_REAL, globalPoints, counts, displs, MPIU_REAL, comm)); 370552f7358SJed Brown } else { 371552f7358SJed Brown N = n; 372552f7358SJed Brown globalPoints = ctx->points; 37338ea73c8SJed Brown counts = displs = NULL; 37438ea73c8SJed Brown layout = NULL; 375552f7358SJed Brown } 376552f7358SJed Brown #if 0 3779566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(N,&foundCells,N,&foundProcs,N,&globalProcs)); 37819436ca2SJed Brown /* foundCells[p] = m->locatePoint(&globalPoints[p*ctx->dim]); */ 379552f7358SJed Brown #else 380cb313848SJed Brown #if defined(PETSC_USE_COMPLEX) 3819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N * ctx->dim, &globalPointsScalar)); 38246b3086cSToby Isaac for (i = 0; i < N * ctx->dim; i++) globalPointsScalar[i] = globalPoints[i]; 383cb313848SJed Brown #else 384cb313848SJed Brown globalPointsScalar = globalPoints; 385cb313848SJed Brown #endif 3869566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, ctx->dim, N * ctx->dim, globalPointsScalar, &pointVec)); 3879566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(N, &foundProcs, N, &globalProcs)); 388ad540459SPierre Jolivet for (p = 0; p < N; ++p) foundProcs[p] = size; 3893a93e3b7SToby Isaac cellSF = NULL; 3909566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dm, pointVec, DM_POINTLOCATION_REMOVE, &cellSF)); 3919566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(cellSF, NULL, &numFound, &foundPoints, &foundCells)); 392552f7358SJed Brown #endif 3933a93e3b7SToby Isaac for (p = 0; p < numFound; ++p) { 3943a93e3b7SToby Isaac if (foundCells[p].index >= 0) foundProcs[foundPoints ? foundPoints[p] : p] = rank; 395552f7358SJed Brown } 396552f7358SJed Brown /* Let the lowest rank process own each point */ 3971c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(foundProcs, globalProcs, N, MPI_INT, MPI_MIN, comm)); 398552f7358SJed Brown ctx->n = 0; 399552f7358SJed Brown for (p = 0; p < N; ++p) { 40052aa1562SMatthew G. Knepley if (globalProcs[p] == size) { 4019371c9d4SSatish Balay PetscCheck(ignoreOutsideDomain, comm, PETSC_ERR_PLIB, "Point %" PetscInt_FMT ": %g %g %g not located in mesh", p, (double)globalPoints[p * ctx->dim + 0], (double)(ctx->dim > 1 ? globalPoints[p * ctx->dim + 1] : 0.0), 4029371c9d4SSatish Balay (double)(ctx->dim > 2 ? globalPoints[p * ctx->dim + 2] : 0.0)); 403f7d195e4SLawrence Mitchell if (rank == 0) ++ctx->n; 40452aa1562SMatthew G. Knepley } else if (globalProcs[p] == rank) ++ctx->n; 405552f7358SJed Brown } 406552f7358SJed Brown /* Create coordinates vector and array of owned cells */ 4079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ctx->n, &ctx->cells)); 4089566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &ctx->coords)); 4099566063dSJacob Faibussowitsch PetscCall(VecSetSizes(ctx->coords, ctx->n * ctx->dim, PETSC_DECIDE)); 4109566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(ctx->coords, ctx->dim)); 4119566063dSJacob Faibussowitsch PetscCall(VecSetType(ctx->coords, VECSTANDARD)); 4129566063dSJacob Faibussowitsch PetscCall(VecGetArray(ctx->coords, &a)); 413552f7358SJed Brown for (p = 0, q = 0, i = 0; p < N; ++p) { 414552f7358SJed Brown if (globalProcs[p] == rank) { 415552f7358SJed Brown PetscInt d; 416552f7358SJed Brown 4171aa26658SKarl Rupp for (d = 0; d < ctx->dim; ++d, ++i) a[i] = globalPoints[p * ctx->dim + d]; 418f317b747SMatthew G. Knepley ctx->cells[q] = foundCells[q].index; 419f317b747SMatthew G. Knepley ++q; 420552f7358SJed Brown } 421dd400576SPatrick Sanan if (globalProcs[p] == size && rank == 0) { 42252aa1562SMatthew G. Knepley PetscInt d; 42352aa1562SMatthew G. Knepley 42452aa1562SMatthew G. Knepley for (d = 0; d < ctx->dim; ++d, ++i) a[i] = 0.; 42552aa1562SMatthew G. Knepley ctx->cells[q] = -1; 42652aa1562SMatthew G. Knepley ++q; 42752aa1562SMatthew G. Knepley } 428552f7358SJed Brown } 4299566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(ctx->coords, &a)); 430552f7358SJed Brown #if 0 4319566063dSJacob Faibussowitsch PetscCall(PetscFree3(foundCells,foundProcs,globalProcs)); 432552f7358SJed Brown #else 4339566063dSJacob Faibussowitsch PetscCall(PetscFree2(foundProcs, globalProcs)); 4349566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&cellSF)); 4359566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 436552f7358SJed Brown #endif 4379566063dSJacob Faibussowitsch if ((void *)globalPointsScalar != (void *)globalPoints) PetscCall(PetscFree(globalPointsScalar)); 4389566063dSJacob Faibussowitsch if (!redundantPoints) PetscCall(PetscFree3(globalPoints, counts, displs)); 4399566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 4403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 441552f7358SJed Brown } 442552f7358SJed Brown 4434267b1a3SMatthew G. Knepley /*@C 444f6dfbefdSBarry Smith DMInterpolationGetCoordinates - Gets a `Vec` with the coordinates of each interpolation point 4454267b1a3SMatthew G. Knepley 446c3339decSBarry Smith Collective 4474267b1a3SMatthew G. Knepley 4484267b1a3SMatthew G. Knepley Input Parameter: 4494267b1a3SMatthew G. Knepley . ctx - the context 4504267b1a3SMatthew G. Knepley 4514267b1a3SMatthew G. Knepley Output Parameter: 4524267b1a3SMatthew G. Knepley . coordinates - the coordinates of interpolation points 4534267b1a3SMatthew G. Knepley 45420f4b53cSBarry Smith Level: intermediate 45520f4b53cSBarry Smith 456f6dfbefdSBarry Smith Note: 457f6dfbefdSBarry Smith The local vector entries correspond to interpolation points lying on this process, according to the associated `DM`. 458f6dfbefdSBarry Smith This is a borrowed vector that the user should not destroy. 4594267b1a3SMatthew G. Knepley 460f6dfbefdSBarry Smith .seealso: `DMInterpolationInfo`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 4614267b1a3SMatthew G. Knepley @*/ 462d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationGetCoordinates(DMInterpolationInfo ctx, Vec *coordinates) 463d71ae5a4SJacob Faibussowitsch { 464552f7358SJed Brown PetscFunctionBegin; 4654f572ea9SToby Isaac PetscAssertPointer(coordinates, 2); 46628b400f6SJacob Faibussowitsch PetscCheck(ctx->coords, ctx->comm, PETSC_ERR_ARG_WRONGSTATE, "The interpolation context has not been setup."); 467552f7358SJed Brown *coordinates = ctx->coords; 4683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 469552f7358SJed Brown } 470552f7358SJed Brown 4714267b1a3SMatthew G. Knepley /*@C 472f6dfbefdSBarry Smith DMInterpolationGetVector - Gets a `Vec` which can hold all the interpolated field values 4734267b1a3SMatthew G. Knepley 474c3339decSBarry Smith Collective 4754267b1a3SMatthew G. Knepley 4764267b1a3SMatthew G. Knepley Input Parameter: 4774267b1a3SMatthew G. Knepley . ctx - the context 4784267b1a3SMatthew G. Knepley 4794267b1a3SMatthew G. Knepley Output Parameter: 4804267b1a3SMatthew G. Knepley . v - a vector capable of holding the interpolated field values 4814267b1a3SMatthew G. Knepley 4822fe279fdSBarry Smith Level: intermediate 4832fe279fdSBarry Smith 484f6dfbefdSBarry Smith Note: 485f6dfbefdSBarry Smith This vector should be returned using `DMInterpolationRestoreVector()`. 4864267b1a3SMatthew G. Knepley 487f6dfbefdSBarry Smith .seealso: `DMInterpolationInfo`, `DMInterpolationRestoreVector()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 4884267b1a3SMatthew G. Knepley @*/ 489d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationGetVector(DMInterpolationInfo ctx, Vec *v) 490d71ae5a4SJacob Faibussowitsch { 491552f7358SJed Brown PetscFunctionBegin; 4924f572ea9SToby Isaac PetscAssertPointer(v, 2); 49328b400f6SJacob Faibussowitsch PetscCheck(ctx->coords, ctx->comm, PETSC_ERR_ARG_WRONGSTATE, "The interpolation context has not been setup."); 4949566063dSJacob Faibussowitsch PetscCall(VecCreate(ctx->comm, v)); 4959566063dSJacob Faibussowitsch PetscCall(VecSetSizes(*v, ctx->n * ctx->dof, PETSC_DECIDE)); 4969566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(*v, ctx->dof)); 4979566063dSJacob Faibussowitsch PetscCall(VecSetType(*v, VECSTANDARD)); 4983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 499552f7358SJed Brown } 500552f7358SJed Brown 5014267b1a3SMatthew G. Knepley /*@C 502f6dfbefdSBarry Smith DMInterpolationRestoreVector - Returns a `Vec` which can hold all the interpolated field values 5034267b1a3SMatthew G. Knepley 504c3339decSBarry Smith Collective 5054267b1a3SMatthew G. Knepley 5064267b1a3SMatthew G. Knepley Input Parameters: 5074267b1a3SMatthew G. Knepley + ctx - the context 5084267b1a3SMatthew G. Knepley - v - a vector capable of holding the interpolated field values 5094267b1a3SMatthew G. Knepley 5104267b1a3SMatthew G. Knepley Level: intermediate 5114267b1a3SMatthew G. Knepley 512f6dfbefdSBarry Smith .seealso: `DMInterpolationInfo`, `DMInterpolationGetVector()`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 5134267b1a3SMatthew G. Knepley @*/ 514d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationRestoreVector(DMInterpolationInfo ctx, Vec *v) 515d71ae5a4SJacob Faibussowitsch { 516552f7358SJed Brown PetscFunctionBegin; 5174f572ea9SToby Isaac PetscAssertPointer(v, 2); 51828b400f6SJacob Faibussowitsch PetscCheck(ctx->coords, ctx->comm, PETSC_ERR_ARG_WRONGSTATE, "The interpolation context has not been setup."); 5199566063dSJacob Faibussowitsch PetscCall(VecDestroy(v)); 5203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 521552f7358SJed Brown } 522552f7358SJed Brown 523ab72731fSMatthew G. Knepley static inline PetscErrorCode DMInterpolate_Segment_Private(DMInterpolationInfo ctx, DM dm, PetscInt p, Vec xLocal, Vec v) 524d71ae5a4SJacob Faibussowitsch { 525ab72731fSMatthew G. Knepley const PetscInt c = ctx->cells[p]; 526cfe5744fSMatthew G. Knepley const PetscInt dof = ctx->dof; 527ab72731fSMatthew G. Knepley PetscScalar *x = NULL; 528cfe5744fSMatthew G. Knepley const PetscScalar *coords; 529cfe5744fSMatthew G. Knepley PetscScalar *a; 530ab72731fSMatthew G. Knepley PetscReal v0, J, invJ, detJ, xir[1]; 531ab72731fSMatthew G. Knepley PetscInt xSize, comp; 532cfe5744fSMatthew G. Knepley 533cfe5744fSMatthew G. Knepley PetscFunctionBegin; 5349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 5359566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &a)); 5369566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, &v0, &J, &invJ, &detJ)); 537cfe5744fSMatthew G. Knepley PetscCheck(detJ > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT, (double)detJ, c); 538cfe5744fSMatthew G. Knepley xir[0] = invJ * PetscRealPart(coords[p] - v0); 5399566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, xLocal, c, &xSize, &x)); 540cfe5744fSMatthew G. Knepley if (2 * dof == xSize) { 541cfe5744fSMatthew G. Knepley for (comp = 0; comp < dof; ++comp) a[p * dof + comp] = x[0 * dof + comp] * (1 - xir[0]) + x[1 * dof + comp] * xir[0]; 542cfe5744fSMatthew G. Knepley } else if (dof == xSize) { 543cfe5744fSMatthew G. Knepley for (comp = 0; comp < dof; ++comp) a[p * dof + comp] = x[0 * dof + comp]; 544cfe5744fSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Input closure size %" PetscInt_FMT " must be either %" PetscInt_FMT " or %" PetscInt_FMT, xSize, 2 * dof, dof); 5459566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, xLocal, c, &xSize, &x)); 5469566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &a)); 5479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 5483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 549cfe5744fSMatthew G. Knepley } 550cfe5744fSMatthew G. Knepley 551ab72731fSMatthew G. Knepley static inline PetscErrorCode DMInterpolate_Triangle_Private(DMInterpolationInfo ctx, DM dm, PetscInt p, Vec xLocal, Vec v) 552d71ae5a4SJacob Faibussowitsch { 553ab72731fSMatthew G. Knepley const PetscInt c = ctx->cells[p]; 554ab72731fSMatthew G. Knepley PetscScalar *x = NULL; 55556044e6dSMatthew G. Knepley const PetscScalar *coords; 55656044e6dSMatthew G. Knepley PetscScalar *a; 557ab72731fSMatthew G. Knepley PetscReal *v0, *J, *invJ, detJ; 558ab72731fSMatthew G. Knepley PetscReal xi[4]; 559552f7358SJed Brown 560552f7358SJed Brown PetscFunctionBegin; 5619566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(ctx->dim, &v0, ctx->dim * ctx->dim, &J, ctx->dim * ctx->dim, &invJ)); 5629566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 5639566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &a)); 5649566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ)); 56563a3b9bcSJacob Faibussowitsch PetscCheck(detJ > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT, (double)detJ, c); 5669566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, xLocal, c, NULL, &x)); 567ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) a[p * ctx->dof + comp] = x[0 * ctx->dof + comp]; 568ab72731fSMatthew G. Knepley for (PetscInt d = 0; d < ctx->dim; ++d) { 569552f7358SJed Brown xi[d] = 0.0; 570ab72731fSMatthew G. Knepley for (PetscInt f = 0; f < ctx->dim; ++f) xi[d] += invJ[d * ctx->dim + f] * 0.5 * PetscRealPart(coords[p * ctx->dim + f] - v0[f]); 571ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) a[p * ctx->dof + comp] += PetscRealPart(x[(d + 1) * ctx->dof + comp] - x[0 * ctx->dof + comp]) * xi[d]; 572552f7358SJed Brown } 5739566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, xLocal, c, NULL, &x)); 5749566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &a)); 5759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 5769566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 5773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 578552f7358SJed Brown } 579552f7358SJed Brown 580ab72731fSMatthew G. Knepley static inline PetscErrorCode DMInterpolate_Tetrahedron_Private(DMInterpolationInfo ctx, DM dm, PetscInt p, Vec xLocal, Vec v) 581d71ae5a4SJacob Faibussowitsch { 582ab72731fSMatthew G. Knepley const PetscInt c = ctx->cells[p]; 583ab72731fSMatthew G. Knepley const PetscInt order[3] = {2, 1, 3}; 584ab72731fSMatthew G. Knepley PetscScalar *x = NULL; 5857a1931ceSMatthew G. Knepley PetscReal *v0, *J, *invJ, detJ; 58656044e6dSMatthew G. Knepley const PetscScalar *coords; 58756044e6dSMatthew G. Knepley PetscScalar *a; 588ab72731fSMatthew G. Knepley PetscReal xi[4]; 5897a1931ceSMatthew G. Knepley 5907a1931ceSMatthew G. Knepley PetscFunctionBegin; 5919566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(ctx->dim, &v0, ctx->dim * ctx->dim, &J, ctx->dim * ctx->dim, &invJ)); 5929566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 5939566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &a)); 5949566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ)); 59563a3b9bcSJacob Faibussowitsch PetscCheck(detJ > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT, (double)detJ, c); 5969566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, xLocal, c, NULL, &x)); 597ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) a[p * ctx->dof + comp] = x[0 * ctx->dof + comp]; 598ab72731fSMatthew G. Knepley for (PetscInt d = 0; d < ctx->dim; ++d) { 5997a1931ceSMatthew G. Knepley xi[d] = 0.0; 600ab72731fSMatthew G. Knepley for (PetscInt f = 0; f < ctx->dim; ++f) xi[d] += invJ[d * ctx->dim + f] * 0.5 * PetscRealPart(coords[p * ctx->dim + f] - v0[f]); 601ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) a[p * ctx->dof + comp] += PetscRealPart(x[order[d] * ctx->dof + comp] - x[0 * ctx->dof + comp]) * xi[d]; 6027a1931ceSMatthew G. Knepley } 6039566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, xLocal, c, NULL, &x)); 6049566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &a)); 6059566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 6069566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 6073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6087a1931ceSMatthew G. Knepley } 6097a1931ceSMatthew G. Knepley 610d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode QuadMap_Private(SNES snes, Vec Xref, Vec Xreal, void *ctx) 611d71ae5a4SJacob Faibussowitsch { 612552f7358SJed Brown const PetscScalar *vertices = (const PetscScalar *)ctx; 613552f7358SJed Brown const PetscScalar x0 = vertices[0]; 614552f7358SJed Brown const PetscScalar y0 = vertices[1]; 615552f7358SJed Brown const PetscScalar x1 = vertices[2]; 616552f7358SJed Brown const PetscScalar y1 = vertices[3]; 617552f7358SJed Brown const PetscScalar x2 = vertices[4]; 618552f7358SJed Brown const PetscScalar y2 = vertices[5]; 619552f7358SJed Brown const PetscScalar x3 = vertices[6]; 620552f7358SJed Brown const PetscScalar y3 = vertices[7]; 621552f7358SJed Brown const PetscScalar f_1 = x1 - x0; 622552f7358SJed Brown const PetscScalar g_1 = y1 - y0; 623552f7358SJed Brown const PetscScalar f_3 = x3 - x0; 624552f7358SJed Brown const PetscScalar g_3 = y3 - y0; 625552f7358SJed Brown const PetscScalar f_01 = x2 - x1 - x3 + x0; 626552f7358SJed Brown const PetscScalar g_01 = y2 - y1 - y3 + y0; 62756044e6dSMatthew G. Knepley const PetscScalar *ref; 62856044e6dSMatthew G. Knepley PetscScalar *real; 629552f7358SJed Brown 630552f7358SJed Brown PetscFunctionBegin; 6319566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Xref, &ref)); 6329566063dSJacob Faibussowitsch PetscCall(VecGetArray(Xreal, &real)); 633552f7358SJed Brown { 634552f7358SJed Brown const PetscScalar p0 = ref[0]; 635552f7358SJed Brown const PetscScalar p1 = ref[1]; 636552f7358SJed Brown 637552f7358SJed Brown real[0] = x0 + f_1 * p0 + f_3 * p1 + f_01 * p0 * p1; 638552f7358SJed Brown real[1] = y0 + g_1 * p0 + g_3 * p1 + g_01 * p0 * p1; 639552f7358SJed Brown } 6409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(28)); 6419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Xref, &ref)); 6429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Xreal, &real)); 6433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 644552f7358SJed Brown } 645552f7358SJed Brown 646af0996ceSBarry Smith #include <petsc/private/dmimpl.h> 647d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode QuadJacobian_Private(SNES snes, Vec Xref, Mat J, Mat M, void *ctx) 648d71ae5a4SJacob Faibussowitsch { 649552f7358SJed Brown const PetscScalar *vertices = (const PetscScalar *)ctx; 650552f7358SJed Brown const PetscScalar x0 = vertices[0]; 651552f7358SJed Brown const PetscScalar y0 = vertices[1]; 652552f7358SJed Brown const PetscScalar x1 = vertices[2]; 653552f7358SJed Brown const PetscScalar y1 = vertices[3]; 654552f7358SJed Brown const PetscScalar x2 = vertices[4]; 655552f7358SJed Brown const PetscScalar y2 = vertices[5]; 656552f7358SJed Brown const PetscScalar x3 = vertices[6]; 657552f7358SJed Brown const PetscScalar y3 = vertices[7]; 658552f7358SJed Brown const PetscScalar f_01 = x2 - x1 - x3 + x0; 659552f7358SJed Brown const PetscScalar g_01 = y2 - y1 - y3 + y0; 66056044e6dSMatthew G. Knepley const PetscScalar *ref; 661552f7358SJed Brown 662552f7358SJed Brown PetscFunctionBegin; 6639566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Xref, &ref)); 664552f7358SJed Brown { 665552f7358SJed Brown const PetscScalar x = ref[0]; 666552f7358SJed Brown const PetscScalar y = ref[1]; 667552f7358SJed Brown const PetscInt rows[2] = {0, 1}; 668da80777bSKarl Rupp PetscScalar values[4]; 669da80777bSKarl Rupp 6709371c9d4SSatish Balay values[0] = (x1 - x0 + f_01 * y) * 0.5; 6719371c9d4SSatish Balay values[1] = (x3 - x0 + f_01 * x) * 0.5; 6729371c9d4SSatish Balay values[2] = (y1 - y0 + g_01 * y) * 0.5; 6739371c9d4SSatish Balay values[3] = (y3 - y0 + g_01 * x) * 0.5; 6749566063dSJacob Faibussowitsch PetscCall(MatSetValues(J, 2, rows, 2, rows, values, INSERT_VALUES)); 675552f7358SJed Brown } 6769566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(30)); 6779566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Xref, &ref)); 6789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(J, MAT_FINAL_ASSEMBLY)); 6799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(J, MAT_FINAL_ASSEMBLY)); 6803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 681552f7358SJed Brown } 682552f7358SJed Brown 683ab72731fSMatthew G. Knepley static inline PetscErrorCode DMInterpolate_Quad_Private(DMInterpolationInfo ctx, DM dm, PetscInt p, Vec xLocal, Vec v) 684d71ae5a4SJacob Faibussowitsch { 685ab72731fSMatthew G. Knepley const PetscInt c = ctx->cells[p]; 686de73a395SMatthew G. Knepley PetscFE fem = NULL; 687ab72731fSMatthew G. Knepley DM dmCoord; 688552f7358SJed Brown SNES snes; 689552f7358SJed Brown KSP ksp; 690552f7358SJed Brown PC pc; 691552f7358SJed Brown Vec coordsLocal, r, ref, real; 692552f7358SJed Brown Mat J; 693716009bfSMatthew G. Knepley PetscTabulation T = NULL; 69456044e6dSMatthew G. Knepley const PetscScalar *coords; 69556044e6dSMatthew G. Knepley PetscScalar *a; 696716009bfSMatthew G. Knepley PetscReal xir[2] = {0., 0.}; 697ab72731fSMatthew G. Knepley PetscInt Nf; 6985509d985SMatthew G. Knepley const PetscInt dof = ctx->dof; 699ab72731fSMatthew G. Knepley PetscScalar *x = NULL, *vertices = NULL; 700ab72731fSMatthew G. Knepley PetscScalar *xi; 701ab72731fSMatthew G. Knepley PetscInt coordSize, xSize; 702552f7358SJed Brown 703552f7358SJed Brown PetscFunctionBegin; 7049566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 705716009bfSMatthew G. Knepley if (Nf) { 706cfe5744fSMatthew G. Knepley PetscObject obj; 707cfe5744fSMatthew G. Knepley PetscClassId id; 708cfe5744fSMatthew G. Knepley 7099566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, 0, NULL, &obj)); 7109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 7119371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 7129371c9d4SSatish Balay fem = (PetscFE)obj; 7139371c9d4SSatish Balay PetscCall(PetscFECreateTabulation(fem, 1, 1, xir, 0, &T)); 7149371c9d4SSatish Balay } 715716009bfSMatthew G. Knepley } 7169566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordsLocal)); 7179566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &dmCoord)); 7189566063dSJacob Faibussowitsch PetscCall(SNESCreate(PETSC_COMM_SELF, &snes)); 7199566063dSJacob Faibussowitsch PetscCall(SNESSetOptionsPrefix(snes, "quad_interp_")); 7209566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &r)); 7219566063dSJacob Faibussowitsch PetscCall(VecSetSizes(r, 2, 2)); 7229566063dSJacob Faibussowitsch PetscCall(VecSetType(r, dm->vectype)); 7239566063dSJacob Faibussowitsch PetscCall(VecDuplicate(r, &ref)); 7249566063dSJacob Faibussowitsch PetscCall(VecDuplicate(r, &real)); 7259566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &J)); 7269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(J, 2, 2, 2, 2)); 7279566063dSJacob Faibussowitsch PetscCall(MatSetType(J, MATSEQDENSE)); 7289566063dSJacob Faibussowitsch PetscCall(MatSetUp(J)); 7299566063dSJacob Faibussowitsch PetscCall(SNESSetFunction(snes, r, QuadMap_Private, NULL)); 7309566063dSJacob Faibussowitsch PetscCall(SNESSetJacobian(snes, J, J, QuadJacobian_Private, NULL)); 7319566063dSJacob Faibussowitsch PetscCall(SNESGetKSP(snes, &ksp)); 7329566063dSJacob Faibussowitsch PetscCall(KSPGetPC(ksp, &pc)); 7339566063dSJacob Faibussowitsch PetscCall(PCSetType(pc, PCLU)); 7349566063dSJacob Faibussowitsch PetscCall(SNESSetFromOptions(snes)); 735552f7358SJed Brown 7369566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 7379566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &a)); 7389566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmCoord, NULL, coordsLocal, c, &coordSize, &vertices)); 73963a3b9bcSJacob Faibussowitsch PetscCheck(4 * 2 == coordSize, ctx->comm, PETSC_ERR_ARG_SIZ, "Invalid closure size %" PetscInt_FMT " should be %d", coordSize, 4 * 2); 7409566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, xLocal, c, &xSize, &x)); 7419566063dSJacob Faibussowitsch PetscCall(SNESSetFunction(snes, NULL, NULL, vertices)); 7429566063dSJacob Faibussowitsch PetscCall(SNESSetJacobian(snes, NULL, NULL, NULL, vertices)); 7439566063dSJacob Faibussowitsch PetscCall(VecGetArray(real, &xi)); 744552f7358SJed Brown xi[0] = coords[p * ctx->dim + 0]; 745552f7358SJed Brown xi[1] = coords[p * ctx->dim + 1]; 7469566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(real, &xi)); 7479566063dSJacob Faibussowitsch PetscCall(SNESSolve(snes, real, ref)); 7489566063dSJacob Faibussowitsch PetscCall(VecGetArray(ref, &xi)); 749cb313848SJed Brown xir[0] = PetscRealPart(xi[0]); 750cb313848SJed Brown xir[1] = PetscRealPart(xi[1]); 751cfe5744fSMatthew G. Knepley if (4 * dof == xSize) { 752ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < dof; ++comp) a[p * dof + comp] = x[0 * dof + comp] * (1 - xir[0]) * (1 - xir[1]) + x[1 * dof + comp] * xir[0] * (1 - xir[1]) + x[2 * dof + comp] * xir[0] * xir[1] + x[3 * dof + comp] * (1 - xir[0]) * xir[1]; 753cfe5744fSMatthew G. Knepley } else if (dof == xSize) { 754ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < dof; ++comp) a[p * dof + comp] = x[0 * dof + comp]; 755cfe5744fSMatthew G. Knepley } else { 7562c71b3e2SJacob Faibussowitsch PetscCheck(fem, ctx->comm, PETSC_ERR_ARG_WRONG, "Cannot have a higher order interpolant if the discretization is not PetscFE"); 7579371c9d4SSatish Balay xir[0] = 2.0 * xir[0] - 1.0; 7589371c9d4SSatish Balay xir[1] = 2.0 * xir[1] - 1.0; 7599566063dSJacob Faibussowitsch PetscCall(PetscFEComputeTabulation(fem, 1, xir, 0, T)); 760ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < dof; ++comp) { 7615509d985SMatthew G. Knepley a[p * dof + comp] = 0.0; 762ab72731fSMatthew G. Knepley for (PetscInt d = 0; d < xSize / dof; ++d) a[p * dof + comp] += x[d * dof + comp] * T->T[0][d * dof + comp]; 7635509d985SMatthew G. Knepley } 7645509d985SMatthew G. Knepley } 7659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(ref, &xi)); 7669566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmCoord, NULL, coordsLocal, c, &coordSize, &vertices)); 7679566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, xLocal, c, &xSize, &x)); 7689566063dSJacob Faibussowitsch PetscCall(PetscTabulationDestroy(&T)); 7699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &a)); 7709566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 771552f7358SJed Brown 7729566063dSJacob Faibussowitsch PetscCall(SNESDestroy(&snes)); 7739566063dSJacob Faibussowitsch PetscCall(VecDestroy(&r)); 7749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ref)); 7759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&real)); 7769566063dSJacob Faibussowitsch PetscCall(MatDestroy(&J)); 7773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 778552f7358SJed Brown } 779552f7358SJed Brown 780d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode HexMap_Private(SNES snes, Vec Xref, Vec Xreal, void *ctx) 781d71ae5a4SJacob Faibussowitsch { 782552f7358SJed Brown const PetscScalar *vertices = (const PetscScalar *)ctx; 783552f7358SJed Brown const PetscScalar x0 = vertices[0]; 784552f7358SJed Brown const PetscScalar y0 = vertices[1]; 785552f7358SJed Brown const PetscScalar z0 = vertices[2]; 7867a1931ceSMatthew G. Knepley const PetscScalar x1 = vertices[9]; 7877a1931ceSMatthew G. Knepley const PetscScalar y1 = vertices[10]; 7887a1931ceSMatthew G. Knepley const PetscScalar z1 = vertices[11]; 789552f7358SJed Brown const PetscScalar x2 = vertices[6]; 790552f7358SJed Brown const PetscScalar y2 = vertices[7]; 791552f7358SJed Brown const PetscScalar z2 = vertices[8]; 7927a1931ceSMatthew G. Knepley const PetscScalar x3 = vertices[3]; 7937a1931ceSMatthew G. Knepley const PetscScalar y3 = vertices[4]; 7947a1931ceSMatthew G. Knepley const PetscScalar z3 = vertices[5]; 795552f7358SJed Brown const PetscScalar x4 = vertices[12]; 796552f7358SJed Brown const PetscScalar y4 = vertices[13]; 797552f7358SJed Brown const PetscScalar z4 = vertices[14]; 798552f7358SJed Brown const PetscScalar x5 = vertices[15]; 799552f7358SJed Brown const PetscScalar y5 = vertices[16]; 800552f7358SJed Brown const PetscScalar z5 = vertices[17]; 801552f7358SJed Brown const PetscScalar x6 = vertices[18]; 802552f7358SJed Brown const PetscScalar y6 = vertices[19]; 803552f7358SJed Brown const PetscScalar z6 = vertices[20]; 804552f7358SJed Brown const PetscScalar x7 = vertices[21]; 805552f7358SJed Brown const PetscScalar y7 = vertices[22]; 806552f7358SJed Brown const PetscScalar z7 = vertices[23]; 807552f7358SJed Brown const PetscScalar f_1 = x1 - x0; 808552f7358SJed Brown const PetscScalar g_1 = y1 - y0; 809552f7358SJed Brown const PetscScalar h_1 = z1 - z0; 810552f7358SJed Brown const PetscScalar f_3 = x3 - x0; 811552f7358SJed Brown const PetscScalar g_3 = y3 - y0; 812552f7358SJed Brown const PetscScalar h_3 = z3 - z0; 813552f7358SJed Brown const PetscScalar f_4 = x4 - x0; 814552f7358SJed Brown const PetscScalar g_4 = y4 - y0; 815552f7358SJed Brown const PetscScalar h_4 = z4 - z0; 816552f7358SJed Brown const PetscScalar f_01 = x2 - x1 - x3 + x0; 817552f7358SJed Brown const PetscScalar g_01 = y2 - y1 - y3 + y0; 818552f7358SJed Brown const PetscScalar h_01 = z2 - z1 - z3 + z0; 819552f7358SJed Brown const PetscScalar f_12 = x7 - x3 - x4 + x0; 820552f7358SJed Brown const PetscScalar g_12 = y7 - y3 - y4 + y0; 821552f7358SJed Brown const PetscScalar h_12 = z7 - z3 - z4 + z0; 822552f7358SJed Brown const PetscScalar f_02 = x5 - x1 - x4 + x0; 823552f7358SJed Brown const PetscScalar g_02 = y5 - y1 - y4 + y0; 824552f7358SJed Brown const PetscScalar h_02 = z5 - z1 - z4 + z0; 825552f7358SJed Brown const PetscScalar f_012 = x6 - x0 + x1 - x2 + x3 + x4 - x5 - x7; 826552f7358SJed Brown const PetscScalar g_012 = y6 - y0 + y1 - y2 + y3 + y4 - y5 - y7; 827552f7358SJed Brown const PetscScalar h_012 = z6 - z0 + z1 - z2 + z3 + z4 - z5 - z7; 82856044e6dSMatthew G. Knepley const PetscScalar *ref; 82956044e6dSMatthew G. Knepley PetscScalar *real; 830552f7358SJed Brown 831552f7358SJed Brown PetscFunctionBegin; 8329566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Xref, &ref)); 8339566063dSJacob Faibussowitsch PetscCall(VecGetArray(Xreal, &real)); 834552f7358SJed Brown { 835552f7358SJed Brown const PetscScalar p0 = ref[0]; 836552f7358SJed Brown const PetscScalar p1 = ref[1]; 837552f7358SJed Brown const PetscScalar p2 = ref[2]; 838552f7358SJed Brown 839552f7358SJed Brown real[0] = x0 + f_1 * p0 + f_3 * p1 + f_4 * p2 + f_01 * p0 * p1 + f_12 * p1 * p2 + f_02 * p0 * p2 + f_012 * p0 * p1 * p2; 840552f7358SJed Brown real[1] = y0 + g_1 * p0 + g_3 * p1 + g_4 * p2 + g_01 * p0 * p1 + g_01 * p0 * p1 + g_12 * p1 * p2 + g_02 * p0 * p2 + g_012 * p0 * p1 * p2; 841552f7358SJed Brown real[2] = z0 + h_1 * p0 + h_3 * p1 + h_4 * p2 + h_01 * p0 * p1 + h_01 * p0 * p1 + h_12 * p1 * p2 + h_02 * p0 * p2 + h_012 * p0 * p1 * p2; 842552f7358SJed Brown } 8439566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(114)); 8449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Xref, &ref)); 8459566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Xreal, &real)); 8463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 847552f7358SJed Brown } 848552f7358SJed Brown 849d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode HexJacobian_Private(SNES snes, Vec Xref, Mat J, Mat M, void *ctx) 850d71ae5a4SJacob Faibussowitsch { 851552f7358SJed Brown const PetscScalar *vertices = (const PetscScalar *)ctx; 852552f7358SJed Brown const PetscScalar x0 = vertices[0]; 853552f7358SJed Brown const PetscScalar y0 = vertices[1]; 854552f7358SJed Brown const PetscScalar z0 = vertices[2]; 8557a1931ceSMatthew G. Knepley const PetscScalar x1 = vertices[9]; 8567a1931ceSMatthew G. Knepley const PetscScalar y1 = vertices[10]; 8577a1931ceSMatthew G. Knepley const PetscScalar z1 = vertices[11]; 858552f7358SJed Brown const PetscScalar x2 = vertices[6]; 859552f7358SJed Brown const PetscScalar y2 = vertices[7]; 860552f7358SJed Brown const PetscScalar z2 = vertices[8]; 8617a1931ceSMatthew G. Knepley const PetscScalar x3 = vertices[3]; 8627a1931ceSMatthew G. Knepley const PetscScalar y3 = vertices[4]; 8637a1931ceSMatthew G. Knepley const PetscScalar z3 = vertices[5]; 864552f7358SJed Brown const PetscScalar x4 = vertices[12]; 865552f7358SJed Brown const PetscScalar y4 = vertices[13]; 866552f7358SJed Brown const PetscScalar z4 = vertices[14]; 867552f7358SJed Brown const PetscScalar x5 = vertices[15]; 868552f7358SJed Brown const PetscScalar y5 = vertices[16]; 869552f7358SJed Brown const PetscScalar z5 = vertices[17]; 870552f7358SJed Brown const PetscScalar x6 = vertices[18]; 871552f7358SJed Brown const PetscScalar y6 = vertices[19]; 872552f7358SJed Brown const PetscScalar z6 = vertices[20]; 873552f7358SJed Brown const PetscScalar x7 = vertices[21]; 874552f7358SJed Brown const PetscScalar y7 = vertices[22]; 875552f7358SJed Brown const PetscScalar z7 = vertices[23]; 876552f7358SJed Brown const PetscScalar f_xy = x2 - x1 - x3 + x0; 877552f7358SJed Brown const PetscScalar g_xy = y2 - y1 - y3 + y0; 878552f7358SJed Brown const PetscScalar h_xy = z2 - z1 - z3 + z0; 879552f7358SJed Brown const PetscScalar f_yz = x7 - x3 - x4 + x0; 880552f7358SJed Brown const PetscScalar g_yz = y7 - y3 - y4 + y0; 881552f7358SJed Brown const PetscScalar h_yz = z7 - z3 - z4 + z0; 882552f7358SJed Brown const PetscScalar f_xz = x5 - x1 - x4 + x0; 883552f7358SJed Brown const PetscScalar g_xz = y5 - y1 - y4 + y0; 884552f7358SJed Brown const PetscScalar h_xz = z5 - z1 - z4 + z0; 885552f7358SJed Brown const PetscScalar f_xyz = x6 - x0 + x1 - x2 + x3 + x4 - x5 - x7; 886552f7358SJed Brown const PetscScalar g_xyz = y6 - y0 + y1 - y2 + y3 + y4 - y5 - y7; 887552f7358SJed Brown const PetscScalar h_xyz = z6 - z0 + z1 - z2 + z3 + z4 - z5 - z7; 88856044e6dSMatthew G. Knepley const PetscScalar *ref; 889552f7358SJed Brown 890552f7358SJed Brown PetscFunctionBegin; 8919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Xref, &ref)); 892552f7358SJed Brown { 893552f7358SJed Brown const PetscScalar x = ref[0]; 894552f7358SJed Brown const PetscScalar y = ref[1]; 895552f7358SJed Brown const PetscScalar z = ref[2]; 896552f7358SJed Brown const PetscInt rows[3] = {0, 1, 2}; 897da80777bSKarl Rupp PetscScalar values[9]; 898da80777bSKarl Rupp 899da80777bSKarl Rupp values[0] = (x1 - x0 + f_xy * y + f_xz * z + f_xyz * y * z) / 2.0; 900da80777bSKarl Rupp values[1] = (x3 - x0 + f_xy * x + f_yz * z + f_xyz * x * z) / 2.0; 901da80777bSKarl Rupp values[2] = (x4 - x0 + f_yz * y + f_xz * x + f_xyz * x * y) / 2.0; 902da80777bSKarl Rupp values[3] = (y1 - y0 + g_xy * y + g_xz * z + g_xyz * y * z) / 2.0; 903da80777bSKarl Rupp values[4] = (y3 - y0 + g_xy * x + g_yz * z + g_xyz * x * z) / 2.0; 904da80777bSKarl Rupp values[5] = (y4 - y0 + g_yz * y + g_xz * x + g_xyz * x * y) / 2.0; 905da80777bSKarl Rupp values[6] = (z1 - z0 + h_xy * y + h_xz * z + h_xyz * y * z) / 2.0; 906da80777bSKarl Rupp values[7] = (z3 - z0 + h_xy * x + h_yz * z + h_xyz * x * z) / 2.0; 907da80777bSKarl Rupp values[8] = (z4 - z0 + h_yz * y + h_xz * x + h_xyz * x * y) / 2.0; 9081aa26658SKarl Rupp 9099566063dSJacob Faibussowitsch PetscCall(MatSetValues(J, 3, rows, 3, rows, values, INSERT_VALUES)); 910552f7358SJed Brown } 9119566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(152)); 9129566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Xref, &ref)); 9139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(J, MAT_FINAL_ASSEMBLY)); 9149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(J, MAT_FINAL_ASSEMBLY)); 9153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 916552f7358SJed Brown } 917552f7358SJed Brown 918ab72731fSMatthew G. Knepley static inline PetscErrorCode DMInterpolate_Hex_Private(DMInterpolationInfo ctx, DM dm, PetscInt p, Vec xLocal, Vec v) 919d71ae5a4SJacob Faibussowitsch { 920ab72731fSMatthew G. Knepley const PetscInt c = ctx->cells[p]; 921fafc0619SMatthew G Knepley DM dmCoord; 922552f7358SJed Brown SNES snes; 923552f7358SJed Brown KSP ksp; 924552f7358SJed Brown PC pc; 925552f7358SJed Brown Vec coordsLocal, r, ref, real; 926552f7358SJed Brown Mat J; 92756044e6dSMatthew G. Knepley const PetscScalar *coords; 92856044e6dSMatthew G. Knepley PetscScalar *a; 929ab72731fSMatthew G. Knepley PetscScalar *x = NULL, *vertices = NULL; 930ab72731fSMatthew G. Knepley PetscScalar *xi; 931ab72731fSMatthew G. Knepley PetscReal xir[3]; 932ab72731fSMatthew G. Knepley PetscInt coordSize, xSize; 933552f7358SJed Brown 934552f7358SJed Brown PetscFunctionBegin; 9359566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordsLocal)); 9369566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &dmCoord)); 9379566063dSJacob Faibussowitsch PetscCall(SNESCreate(PETSC_COMM_SELF, &snes)); 9389566063dSJacob Faibussowitsch PetscCall(SNESSetOptionsPrefix(snes, "hex_interp_")); 9399566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &r)); 9409566063dSJacob Faibussowitsch PetscCall(VecSetSizes(r, 3, 3)); 9419566063dSJacob Faibussowitsch PetscCall(VecSetType(r, dm->vectype)); 9429566063dSJacob Faibussowitsch PetscCall(VecDuplicate(r, &ref)); 9439566063dSJacob Faibussowitsch PetscCall(VecDuplicate(r, &real)); 9449566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &J)); 9459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(J, 3, 3, 3, 3)); 9469566063dSJacob Faibussowitsch PetscCall(MatSetType(J, MATSEQDENSE)); 9479566063dSJacob Faibussowitsch PetscCall(MatSetUp(J)); 9489566063dSJacob Faibussowitsch PetscCall(SNESSetFunction(snes, r, HexMap_Private, NULL)); 9499566063dSJacob Faibussowitsch PetscCall(SNESSetJacobian(snes, J, J, HexJacobian_Private, NULL)); 9509566063dSJacob Faibussowitsch PetscCall(SNESGetKSP(snes, &ksp)); 9519566063dSJacob Faibussowitsch PetscCall(KSPGetPC(ksp, &pc)); 9529566063dSJacob Faibussowitsch PetscCall(PCSetType(pc, PCLU)); 9539566063dSJacob Faibussowitsch PetscCall(SNESSetFromOptions(snes)); 954552f7358SJed Brown 9559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 9569566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &a)); 9579566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmCoord, NULL, coordsLocal, c, &coordSize, &vertices)); 958cfe5744fSMatthew G. Knepley PetscCheck(8 * 3 == coordSize, ctx->comm, PETSC_ERR_ARG_SIZ, "Invalid coordinate closure size %" PetscInt_FMT " should be %d", coordSize, 8 * 3); 9599566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, xLocal, c, &xSize, &x)); 960cfe5744fSMatthew G. Knepley PetscCheck((8 * ctx->dof == xSize) || (ctx->dof == xSize), ctx->comm, PETSC_ERR_ARG_SIZ, "Invalid input closure size %" PetscInt_FMT " should be %" PetscInt_FMT " or %" PetscInt_FMT, xSize, 8 * ctx->dof, ctx->dof); 9619566063dSJacob Faibussowitsch PetscCall(SNESSetFunction(snes, NULL, NULL, vertices)); 9629566063dSJacob Faibussowitsch PetscCall(SNESSetJacobian(snes, NULL, NULL, NULL, vertices)); 9639566063dSJacob Faibussowitsch PetscCall(VecGetArray(real, &xi)); 964552f7358SJed Brown xi[0] = coords[p * ctx->dim + 0]; 965552f7358SJed Brown xi[1] = coords[p * ctx->dim + 1]; 966552f7358SJed Brown xi[2] = coords[p * ctx->dim + 2]; 9679566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(real, &xi)); 9689566063dSJacob Faibussowitsch PetscCall(SNESSolve(snes, real, ref)); 9699566063dSJacob Faibussowitsch PetscCall(VecGetArray(ref, &xi)); 970cb313848SJed Brown xir[0] = PetscRealPart(xi[0]); 971cb313848SJed Brown xir[1] = PetscRealPart(xi[1]); 972cb313848SJed Brown xir[2] = PetscRealPart(xi[2]); 973cfe5744fSMatthew G. Knepley if (8 * ctx->dof == xSize) { 974ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) { 9759371c9d4SSatish Balay a[p * ctx->dof + comp] = x[0 * ctx->dof + comp] * (1 - xir[0]) * (1 - xir[1]) * (1 - xir[2]) + x[3 * ctx->dof + comp] * xir[0] * (1 - xir[1]) * (1 - xir[2]) + x[2 * ctx->dof + comp] * xir[0] * xir[1] * (1 - xir[2]) + x[1 * ctx->dof + comp] * (1 - xir[0]) * xir[1] * (1 - xir[2]) + 9769371c9d4SSatish Balay x[4 * ctx->dof + comp] * (1 - xir[0]) * (1 - xir[1]) * xir[2] + x[5 * ctx->dof + comp] * xir[0] * (1 - xir[1]) * xir[2] + x[6 * ctx->dof + comp] * xir[0] * xir[1] * xir[2] + x[7 * ctx->dof + comp] * (1 - xir[0]) * xir[1] * xir[2]; 977552f7358SJed Brown } 978cfe5744fSMatthew G. Knepley } else { 979ab72731fSMatthew G. Knepley for (PetscInt comp = 0; comp < ctx->dof; ++comp) a[p * ctx->dof + comp] = x[0 * ctx->dof + comp]; 980cfe5744fSMatthew G. Knepley } 9819566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(ref, &xi)); 9829566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmCoord, NULL, coordsLocal, c, &coordSize, &vertices)); 9839566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, xLocal, c, &xSize, &x)); 9849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &a)); 9859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 986552f7358SJed Brown 9879566063dSJacob Faibussowitsch PetscCall(SNESDestroy(&snes)); 9889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&r)); 9899566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ref)); 9909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&real)); 9919566063dSJacob Faibussowitsch PetscCall(MatDestroy(&J)); 9923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 993552f7358SJed Brown } 994552f7358SJed Brown 9954267b1a3SMatthew G. Knepley /*@C 9964267b1a3SMatthew G. Knepley DMInterpolationEvaluate - Using the input from dm and x, calculates interpolated field values at the interpolation points. 9974267b1a3SMatthew G. Knepley 998552f7358SJed Brown Input Parameters: 999f6dfbefdSBarry Smith + ctx - The `DMInterpolationInfo` context 1000f6dfbefdSBarry Smith . dm - The `DM` 1001552f7358SJed Brown - x - The local vector containing the field to be interpolated 1002552f7358SJed Brown 10032fe279fdSBarry Smith Output Parameter: 1004552f7358SJed Brown . v - The vector containing the interpolated values 10054267b1a3SMatthew G. Knepley 10064267b1a3SMatthew G. Knepley Level: beginner 10074267b1a3SMatthew G. Knepley 10082fe279fdSBarry Smith Note: 10092fe279fdSBarry Smith A suitable `v` can be obtained using `DMInterpolationGetVector()`. 10102fe279fdSBarry Smith 1011f6dfbefdSBarry Smith .seealso: `DMInterpolationInfo`, `DMInterpolationGetVector()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 10124267b1a3SMatthew G. Knepley @*/ 1013d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationEvaluate(DMInterpolationInfo ctx, DM dm, Vec x, Vec v) 1014d71ae5a4SJacob Faibussowitsch { 101566a0a883SMatthew G. Knepley PetscDS ds; 101666a0a883SMatthew G. Knepley PetscInt n, p, Nf, field; 101766a0a883SMatthew G. Knepley PetscBool useDS = PETSC_FALSE; 1018552f7358SJed Brown 1019552f7358SJed Brown PetscFunctionBegin; 1020552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 1021552f7358SJed Brown PetscValidHeaderSpecific(x, VEC_CLASSID, 3); 1022552f7358SJed Brown PetscValidHeaderSpecific(v, VEC_CLASSID, 4); 10239566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &n)); 102463a3b9bcSJacob Faibussowitsch PetscCheck(n == ctx->n * ctx->dof, ctx->comm, PETSC_ERR_ARG_SIZ, "Invalid input vector size %" PetscInt_FMT " should be %" PetscInt_FMT, n, ctx->n * ctx->dof); 10253ba16761SJacob Faibussowitsch if (!n) PetscFunctionReturn(PETSC_SUCCESS); 10269566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 1027680d18d5SMatthew G. Knepley if (ds) { 102866a0a883SMatthew G. Knepley useDS = PETSC_TRUE; 10299566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 1030680d18d5SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 103166a0a883SMatthew G. Knepley PetscObject obj; 1032680d18d5SMatthew G. Knepley PetscClassId id; 1033680d18d5SMatthew G. Knepley 10349566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, field, &obj)); 10359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1036*c3af198dSMatthew G. Knepley if (id != PETSCFE_CLASSID && id != PETSCFV_CLASSID) { 10379371c9d4SSatish Balay useDS = PETSC_FALSE; 10389371c9d4SSatish Balay break; 10399371c9d4SSatish Balay } 104066a0a883SMatthew G. Knepley } 104166a0a883SMatthew G. Knepley } 104266a0a883SMatthew G. Knepley if (useDS) { 104366a0a883SMatthew G. Knepley const PetscScalar *coords; 104466a0a883SMatthew G. Knepley PetscScalar *interpolant; 104566a0a883SMatthew G. Knepley PetscInt cdim, d; 104666a0a883SMatthew G. Knepley 10479566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 10489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->coords, &coords)); 10499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &interpolant)); 1050680d18d5SMatthew G. Knepley for (p = 0; p < ctx->n; ++p) { 105166a0a883SMatthew G. Knepley PetscReal pcoords[3], xi[3]; 1052680d18d5SMatthew G. Knepley PetscScalar *xa = NULL; 105366a0a883SMatthew G. Knepley PetscInt coff = 0, foff = 0, clSize; 1054680d18d5SMatthew G. Knepley 105552aa1562SMatthew G. Knepley if (ctx->cells[p] < 0) continue; 1056680d18d5SMatthew G. Knepley for (d = 0; d < cdim; ++d) pcoords[d] = PetscRealPart(coords[p * cdim + d]); 10579566063dSJacob Faibussowitsch PetscCall(DMPlexCoordinatesToReference(dm, ctx->cells[p], 1, pcoords, xi)); 10589566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, x, ctx->cells[p], &clSize, &xa)); 105966a0a883SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 106066a0a883SMatthew G. Knepley PetscTabulation T; 1061*c3af198dSMatthew G. Knepley PetscObject obj; 1062*c3af198dSMatthew G. Knepley PetscClassId id; 106366a0a883SMatthew G. Knepley 1064*c3af198dSMatthew G. Knepley PetscCall(PetscDSGetDiscretization(ds, field, &obj)); 1065*c3af198dSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 1066*c3af198dSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1067*c3af198dSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 1068*c3af198dSMatthew G. Knepley 10699566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation(fe, 1, 1, xi, 0, &T)); 1070680d18d5SMatthew G. Knepley { 1071680d18d5SMatthew G. Knepley const PetscReal *basis = T->T[0]; 1072680d18d5SMatthew G. Knepley const PetscInt Nb = T->Nb; 1073680d18d5SMatthew G. Knepley const PetscInt Nc = T->Nc; 107466a0a883SMatthew G. Knepley 1075*c3af198dSMatthew G. Knepley for (PetscInt fc = 0; fc < Nc; ++fc) { 107666a0a883SMatthew G. Knepley interpolant[p * ctx->dof + coff + fc] = 0.0; 1077*c3af198dSMatthew G. Knepley for (PetscInt f = 0; f < Nb; ++f) interpolant[p * ctx->dof + coff + fc] += xa[foff + f] * basis[(0 * Nb + f) * Nc + fc]; 1078680d18d5SMatthew G. Knepley } 107966a0a883SMatthew G. Knepley coff += Nc; 108066a0a883SMatthew G. Knepley foff += Nb; 1081680d18d5SMatthew G. Knepley } 10829566063dSJacob Faibussowitsch PetscCall(PetscTabulationDestroy(&T)); 1083*c3af198dSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1084*c3af198dSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 1085*c3af198dSMatthew G. Knepley PetscInt Nc; 1086*c3af198dSMatthew G. Knepley 1087*c3af198dSMatthew G. Knepley // TODO Could use reconstruction if available 1088*c3af198dSMatthew G. Knepley PetscCall(PetscFVGetNumComponents(fv, &Nc)); 1089*c3af198dSMatthew G. Knepley for (PetscInt fc = 0; fc < Nc; ++fc) interpolant[p * ctx->dof + coff + fc] = xa[foff + fc]; 1090*c3af198dSMatthew G. Knepley coff += Nc; 1091*c3af198dSMatthew G. Knepley foff += Nc; 1092*c3af198dSMatthew G. Knepley } 1093680d18d5SMatthew G. Knepley } 10949566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, x, ctx->cells[p], &clSize, &xa)); 109563a3b9bcSJacob Faibussowitsch PetscCheck(coff == ctx->dof, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Total components %" PetscInt_FMT " != %" PetscInt_FMT " dof specified for interpolation", coff, ctx->dof); 1096*c3af198dSMatthew G. Knepley PetscCheck(foff == clSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Total FE/FV space size %" PetscInt_FMT " != %" PetscInt_FMT " closure size", foff, clSize); 109766a0a883SMatthew G. Knepley } 10989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->coords, &coords)); 10999566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &interpolant)); 110066a0a883SMatthew G. Knepley } else { 1101ab72731fSMatthew G. Knepley for (PetscInt p = 0; p < ctx->n; ++p) { 1102ab72731fSMatthew G. Knepley const PetscInt cell = ctx->cells[p]; 110366a0a883SMatthew G. Knepley DMPolytopeType ct; 110466a0a883SMatthew G. Knepley 1105ab72731fSMatthew G. Knepley PetscCall(DMPlexGetCellType(dm, cell, &ct)); 1106680d18d5SMatthew G. Knepley switch (ct) { 1107d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_SEGMENT: 1108ab72731fSMatthew G. Knepley PetscCall(DMInterpolate_Segment_Private(ctx, dm, p, x, v)); 1109d71ae5a4SJacob Faibussowitsch break; 1110d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_TRIANGLE: 1111ab72731fSMatthew G. Knepley PetscCall(DMInterpolate_Triangle_Private(ctx, dm, p, x, v)); 1112d71ae5a4SJacob Faibussowitsch break; 1113d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUADRILATERAL: 1114ab72731fSMatthew G. Knepley PetscCall(DMInterpolate_Quad_Private(ctx, dm, p, x, v)); 1115d71ae5a4SJacob Faibussowitsch break; 1116d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_TETRAHEDRON: 1117ab72731fSMatthew G. Knepley PetscCall(DMInterpolate_Tetrahedron_Private(ctx, dm, p, x, v)); 1118d71ae5a4SJacob Faibussowitsch break; 1119d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_HEXAHEDRON: 1120ab72731fSMatthew G. Knepley PetscCall(DMInterpolate_Hex_Private(ctx, dm, cell, x, v)); 1121d71ae5a4SJacob Faibussowitsch break; 1122d71ae5a4SJacob Faibussowitsch default: 1123d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for cell type %s", DMPolytopeTypes[PetscMax(0, PetscMin(ct, DM_NUM_POLYTOPES))]); 1124680d18d5SMatthew G. Knepley } 1125552f7358SJed Brown } 1126ab72731fSMatthew G. Knepley } 11273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1128552f7358SJed Brown } 1129552f7358SJed Brown 11304267b1a3SMatthew G. Knepley /*@C 1131f6dfbefdSBarry Smith DMInterpolationDestroy - Destroys a `DMInterpolationInfo` context 11324267b1a3SMatthew G. Knepley 1133c3339decSBarry Smith Collective 11344267b1a3SMatthew G. Knepley 11354267b1a3SMatthew G. Knepley Input Parameter: 11364267b1a3SMatthew G. Knepley . ctx - the context 11374267b1a3SMatthew G. Knepley 11384267b1a3SMatthew G. Knepley Level: beginner 11394267b1a3SMatthew G. Knepley 1140f6dfbefdSBarry Smith .seealso: `DMInterpolationInfo`, `DMInterpolationEvaluate()`, `DMInterpolationAddPoints()`, `DMInterpolationCreate()` 11414267b1a3SMatthew G. Knepley @*/ 1142d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolationDestroy(DMInterpolationInfo *ctx) 1143d71ae5a4SJacob Faibussowitsch { 1144552f7358SJed Brown PetscFunctionBegin; 11454f572ea9SToby Isaac PetscAssertPointer(ctx, 1); 11469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*ctx)->coords)); 11479566063dSJacob Faibussowitsch PetscCall(PetscFree((*ctx)->points)); 11489566063dSJacob Faibussowitsch PetscCall(PetscFree((*ctx)->cells)); 11499566063dSJacob Faibussowitsch PetscCall(PetscFree(*ctx)); 11500298fd71SBarry Smith *ctx = NULL; 11513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1152552f7358SJed Brown } 1153cc0c4584SMatthew G. Knepley 1154cc0c4584SMatthew G. Knepley /*@C 1155cc0c4584SMatthew G. Knepley SNESMonitorFields - Monitors the residual for each field separately 1156cc0c4584SMatthew G. Knepley 1157c3339decSBarry Smith Collective 1158cc0c4584SMatthew G. Knepley 1159cc0c4584SMatthew G. Knepley Input Parameters: 1160f6dfbefdSBarry Smith + snes - the `SNES` context 1161cc0c4584SMatthew G. Knepley . its - iteration number 1162cc0c4584SMatthew G. Knepley . fgnorm - 2-norm of residual 1163f6dfbefdSBarry Smith - vf - `PetscViewerAndFormat` of `PetscViewerType` `PETSCVIEWERASCII` 1164cc0c4584SMatthew G. Knepley 11652fe279fdSBarry Smith Level: intermediate 11662fe279fdSBarry Smith 1167f6dfbefdSBarry Smith Note: 1168cc0c4584SMatthew G. Knepley This routine prints the residual norm at each iteration. 1169cc0c4584SMatthew G. Knepley 1170f6dfbefdSBarry Smith .seealso: `SNES`, `SNESMonitorSet()`, `SNESMonitorDefault()` 1171cc0c4584SMatthew G. Knepley @*/ 1172d71ae5a4SJacob Faibussowitsch PetscErrorCode SNESMonitorFields(SNES snes, PetscInt its, PetscReal fgnorm, PetscViewerAndFormat *vf) 1173d71ae5a4SJacob Faibussowitsch { 1174d43b4f6eSBarry Smith PetscViewer viewer = vf->viewer; 1175cc0c4584SMatthew G. Knepley Vec res; 1176cc0c4584SMatthew G. Knepley DM dm; 1177cc0c4584SMatthew G. Knepley PetscSection s; 1178cc0c4584SMatthew G. Knepley const PetscScalar *r; 1179cc0c4584SMatthew G. Knepley PetscReal *lnorms, *norms; 1180cc0c4584SMatthew G. Knepley PetscInt numFields, f, pStart, pEnd, p; 1181cc0c4584SMatthew G. Knepley 1182cc0c4584SMatthew G. Knepley PetscFunctionBegin; 11834d4332d5SBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 4); 11849566063dSJacob Faibussowitsch PetscCall(SNESGetFunction(snes, &res, NULL, NULL)); 11859566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 11869566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 11879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &numFields)); 11889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 11899566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &lnorms, numFields, &norms)); 11909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(res, &r)); 1191cc0c4584SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 1192cc0c4584SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 1193cc0c4584SMatthew G. Knepley PetscInt fdof, foff, d; 1194cc0c4584SMatthew G. Knepley 11959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &fdof)); 11969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(s, p, f, &foff)); 1197cc0c4584SMatthew G. Knepley for (d = 0; d < fdof; ++d) lnorms[f] += PetscRealPart(PetscSqr(r[foff + d])); 1198cc0c4584SMatthew G. Knepley } 1199cc0c4584SMatthew G. Knepley } 12009566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(res, &r)); 12011c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lnorms, norms, numFields, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 12029566063dSJacob Faibussowitsch PetscCall(PetscViewerPushFormat(viewer, vf->format)); 12039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIAddTab(viewer, ((PetscObject)snes)->tablevel)); 120463a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%3" PetscInt_FMT " SNES Function norm %14.12e [", its, (double)fgnorm)); 1205cc0c4584SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 12069566063dSJacob Faibussowitsch if (f > 0) PetscCall(PetscViewerASCIIPrintf(viewer, ", ")); 12079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%14.12e", (double)PetscSqrtReal(norms[f]))); 1208cc0c4584SMatthew G. Knepley } 12099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "]\n")); 12109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISubtractTab(viewer, ((PetscObject)snes)->tablevel)); 12119566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 12129566063dSJacob Faibussowitsch PetscCall(PetscFree2(lnorms, norms)); 12133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1214cc0c4584SMatthew G. Knepley } 121524cdb843SMatthew G. Knepley 121624cdb843SMatthew G. Knepley /********************* Residual Computation **************************/ 121724cdb843SMatthew G. Knepley 121824cdb843SMatthew G. Knepley /*@ 12198db23a53SJed Brown DMPlexSNESComputeResidualFEM - Sums the local residual into vector F from the local input X using pointwise functions specified by the user 122024cdb843SMatthew G. Knepley 122124cdb843SMatthew G. Knepley Input Parameters: 122224cdb843SMatthew G. Knepley + dm - The mesh 122324cdb843SMatthew G. Knepley . X - Local solution 122424cdb843SMatthew G. Knepley - user - The user context 122524cdb843SMatthew G. Knepley 122624cdb843SMatthew G. Knepley Output Parameter: 122724cdb843SMatthew G. Knepley . F - Local output vector 122824cdb843SMatthew G. Knepley 12292fe279fdSBarry Smith Level: developer 12302fe279fdSBarry Smith 1231f6dfbefdSBarry Smith Note: 1232f6dfbefdSBarry Smith The residual is summed into F; the caller is responsible for using `VecZeroEntries()` or otherwise ensuring that any data in F is intentional. 12338db23a53SJed Brown 1234f6dfbefdSBarry Smith .seealso: `DM`, `DMPlexComputeJacobianAction()` 123524cdb843SMatthew G. Knepley @*/ 1236d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSNESComputeResidualFEM(DM dm, Vec X, Vec F, void *user) 1237d71ae5a4SJacob Faibussowitsch { 12386da023fcSToby Isaac DM plex; 1239083401c6SMatthew G. Knepley IS allcellIS; 12406528b96dSMatthew G. Knepley PetscInt Nds, s; 124124cdb843SMatthew G. Knepley 124224cdb843SMatthew G. Knepley PetscFunctionBegin; 12439566063dSJacob Faibussowitsch PetscCall(DMSNESConvertPlex(dm, &plex, PETSC_TRUE)); 12449566063dSJacob Faibussowitsch PetscCall(DMPlexGetAllCells_Internal(plex, &allcellIS)); 12459566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 12466528b96dSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 12476528b96dSMatthew G. Knepley PetscDS ds; 12486528b96dSMatthew G. Knepley IS cellIS; 124906ad1575SMatthew G. Knepley PetscFormKey key; 12506528b96dSMatthew G. Knepley 125107218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &key.label, NULL, &ds, NULL)); 12526528b96dSMatthew G. Knepley key.value = 0; 12536528b96dSMatthew G. Knepley key.field = 0; 125406ad1575SMatthew G. Knepley key.part = 0; 12556528b96dSMatthew G. Knepley if (!key.label) { 12569566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)allcellIS)); 12576528b96dSMatthew G. Knepley cellIS = allcellIS; 12586528b96dSMatthew G. Knepley } else { 12596528b96dSMatthew G. Knepley IS pointIS; 12606528b96dSMatthew G. Knepley 12616528b96dSMatthew G. Knepley key.value = 1; 12629566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS)); 12639566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(allcellIS, pointIS, &cellIS)); 12649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 12656528b96dSMatthew G. Knepley } 12669566063dSJacob Faibussowitsch PetscCall(DMPlexComputeResidual_Internal(plex, key, cellIS, PETSC_MIN_REAL, X, NULL, 0.0, F, user)); 12679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 12686528b96dSMatthew G. Knepley } 12699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 12709566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 12713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12726528b96dSMatthew G. Knepley } 12736528b96dSMatthew G. Knepley 1274bdd6f66aSToby Isaac /*@ 1275d2b2dc1eSMatthew G. Knepley DMPlexSNESComputeResidualDS - Sums the local residual into vector F from the local input X using all pointwise functions with unique keys in the DS 1276d2b2dc1eSMatthew G. Knepley 1277d2b2dc1eSMatthew G. Knepley Input Parameters: 1278d2b2dc1eSMatthew G. Knepley + dm - The mesh 1279d2b2dc1eSMatthew G. Knepley . X - Local solution 1280d2b2dc1eSMatthew G. Knepley - user - The user context 1281d2b2dc1eSMatthew G. Knepley 1282d2b2dc1eSMatthew G. Knepley Output Parameter: 1283d2b2dc1eSMatthew G. Knepley . F - Local output vector 1284d2b2dc1eSMatthew G. Knepley 1285d2b2dc1eSMatthew G. Knepley Level: developer 1286d2b2dc1eSMatthew G. Knepley 1287d2b2dc1eSMatthew G. Knepley Note: 1288d2b2dc1eSMatthew G. Knepley The residual is summed into F; the caller is responsible for using `VecZeroEntries()` or otherwise ensuring that any data in F is intentional. 1289d2b2dc1eSMatthew G. Knepley 1290d2b2dc1eSMatthew G. Knepley .seealso: `DM`, `DMPlexComputeJacobianAction()` 1291d2b2dc1eSMatthew G. Knepley @*/ 1292d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSNESComputeResidualDS(DM dm, Vec X, Vec F, void *user) 1293d2b2dc1eSMatthew G. Knepley { 1294d2b2dc1eSMatthew G. Knepley DM plex; 1295d2b2dc1eSMatthew G. Knepley IS allcellIS; 1296d2b2dc1eSMatthew G. Knepley PetscInt Nds, s; 1297d2b2dc1eSMatthew G. Knepley 1298d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 1299d2b2dc1eSMatthew G. Knepley PetscCall(DMSNESConvertPlex(dm, &plex, PETSC_TRUE)); 1300d2b2dc1eSMatthew G. Knepley PetscCall(DMPlexGetAllCells_Internal(plex, &allcellIS)); 1301d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 1302d2b2dc1eSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 1303d2b2dc1eSMatthew G. Knepley PetscDS ds; 1304d2b2dc1eSMatthew G. Knepley DMLabel label; 1305d2b2dc1eSMatthew G. Knepley IS cellIS; 1306d2b2dc1eSMatthew G. Knepley 1307d2b2dc1eSMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, NULL, &ds, NULL)); 1308d2b2dc1eSMatthew G. Knepley { 1309d2b2dc1eSMatthew G. Knepley PetscWeakFormKind resmap[2] = {PETSC_WF_F0, PETSC_WF_F1}; 1310d2b2dc1eSMatthew G. Knepley PetscWeakForm wf; 1311d2b2dc1eSMatthew G. Knepley PetscInt Nm = 2, m, Nk = 0, k, kp, off = 0; 1312d2b2dc1eSMatthew G. Knepley PetscFormKey *reskeys; 1313d2b2dc1eSMatthew G. Knepley 1314d2b2dc1eSMatthew G. Knepley /* Get unique residual keys */ 1315d2b2dc1eSMatthew G. Knepley for (m = 0; m < Nm; ++m) { 1316d2b2dc1eSMatthew G. Knepley PetscInt Nkm; 1317d2b2dc1eSMatthew G. Knepley PetscCall(PetscHMapFormGetSize(ds->wf->form[resmap[m]], &Nkm)); 1318d2b2dc1eSMatthew G. Knepley Nk += Nkm; 1319d2b2dc1eSMatthew G. Knepley } 1320d2b2dc1eSMatthew G. Knepley PetscCall(PetscMalloc1(Nk, &reskeys)); 1321d2b2dc1eSMatthew G. Knepley for (m = 0; m < Nm; ++m) PetscCall(PetscHMapFormGetKeys(ds->wf->form[resmap[m]], &off, reskeys)); 1322d2b2dc1eSMatthew G. Knepley PetscCheck(off == Nk, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of keys %" PetscInt_FMT " should be %" PetscInt_FMT, off, Nk); 1323d2b2dc1eSMatthew G. Knepley PetscCall(PetscFormKeySort(Nk, reskeys)); 1324d2b2dc1eSMatthew G. Knepley for (k = 0, kp = 1; kp < Nk; ++kp) { 1325d2b2dc1eSMatthew G. Knepley if ((reskeys[k].label != reskeys[kp].label) || (reskeys[k].value != reskeys[kp].value)) { 1326d2b2dc1eSMatthew G. Knepley ++k; 1327d2b2dc1eSMatthew G. Knepley if (kp != k) reskeys[k] = reskeys[kp]; 1328d2b2dc1eSMatthew G. Knepley } 1329d2b2dc1eSMatthew G. Knepley } 1330d2b2dc1eSMatthew G. Knepley Nk = k; 1331d2b2dc1eSMatthew G. Knepley 1332d2b2dc1eSMatthew G. Knepley PetscCall(PetscDSGetWeakForm(ds, &wf)); 1333d2b2dc1eSMatthew G. Knepley for (k = 0; k < Nk; ++k) { 1334d2b2dc1eSMatthew G. Knepley DMLabel label = reskeys[k].label; 1335d2b2dc1eSMatthew G. Knepley PetscInt val = reskeys[k].value; 1336d2b2dc1eSMatthew G. Knepley 1337d2b2dc1eSMatthew G. Knepley if (!label) { 1338d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)allcellIS)); 1339d2b2dc1eSMatthew G. Knepley cellIS = allcellIS; 1340d2b2dc1eSMatthew G. Knepley } else { 1341d2b2dc1eSMatthew G. Knepley IS pointIS; 1342d2b2dc1eSMatthew G. Knepley 1343d2b2dc1eSMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, val, &pointIS)); 1344d2b2dc1eSMatthew G. Knepley PetscCall(ISIntersect_Caching_Internal(allcellIS, pointIS, &cellIS)); 1345d2b2dc1eSMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1346d2b2dc1eSMatthew G. Knepley } 1347d2b2dc1eSMatthew G. Knepley PetscCall(DMPlexComputeResidual_Internal(plex, reskeys[k], cellIS, PETSC_MIN_REAL, X, NULL, 0.0, F, user)); 1348d2b2dc1eSMatthew G. Knepley PetscCall(ISDestroy(&cellIS)); 1349d2b2dc1eSMatthew G. Knepley } 1350d2b2dc1eSMatthew G. Knepley PetscCall(PetscFree(reskeys)); 1351d2b2dc1eSMatthew G. Knepley } 1352d2b2dc1eSMatthew G. Knepley } 1353d2b2dc1eSMatthew G. Knepley PetscCall(ISDestroy(&allcellIS)); 1354d2b2dc1eSMatthew G. Knepley PetscCall(DMDestroy(&plex)); 1355d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 1356d2b2dc1eSMatthew G. Knepley } 1357d2b2dc1eSMatthew G. Knepley 1358d2b2dc1eSMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 1359d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSNESComputeResidualCEED(DM dm, Vec locX, Vec locF, void *user) 1360d2b2dc1eSMatthew G. Knepley { 1361d2b2dc1eSMatthew G. Knepley Ceed ceed; 1362d2b2dc1eSMatthew G. Knepley DMCeed sd = dm->dmceed; 1363d2b2dc1eSMatthew G. Knepley CeedVector clocX, clocF; 1364d2b2dc1eSMatthew G. Knepley 1365d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 1366d2b2dc1eSMatthew G. Knepley PetscCall(DMGetCeed(dm, &ceed)); 1367d2b2dc1eSMatthew G. Knepley PetscCheck(sd, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "This DM has no CEED data. Call DMCeedCreate() before computing the residual."); 1368d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedComputeGeometry(dm, sd)); 1369d2b2dc1eSMatthew G. Knepley 1370d2b2dc1eSMatthew G. Knepley PetscCall(VecGetCeedVectorRead(locX, ceed, &clocX)); 1371d2b2dc1eSMatthew G. Knepley PetscCall(VecGetCeedVector(locF, ceed, &clocF)); 1372d2b2dc1eSMatthew G. Knepley PetscCallCEED(CeedOperatorApplyAdd(sd->op, clocX, clocF, CEED_REQUEST_IMMEDIATE)); 1373d2b2dc1eSMatthew G. Knepley PetscCall(VecRestoreCeedVectorRead(locX, &clocX)); 1374d2b2dc1eSMatthew G. Knepley PetscCall(VecRestoreCeedVector(locF, &clocF)); 1375d2b2dc1eSMatthew G. Knepley 1376d2b2dc1eSMatthew G. Knepley { 1377d2b2dc1eSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 1378d2b2dc1eSMatthew G. Knepley 1379d2b2dc1eSMatthew G. Knepley if (mesh->printFEM) { 1380d2b2dc1eSMatthew G. Knepley PetscSection section; 1381d2b2dc1eSMatthew G. Knepley Vec locFbc; 1382d2b2dc1eSMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 1383d2b2dc1eSMatthew G. Knepley PetscScalar *zeroes; 1384d2b2dc1eSMatthew G. Knepley 1385d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, §ion)); 1386d2b2dc1eSMatthew G. Knepley PetscCall(VecDuplicate(locF, &locFbc)); 1387d2b2dc1eSMatthew G. Knepley PetscCall(VecCopy(locF, locFbc)); 1388d2b2dc1eSMatthew G. Knepley PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 1389d2b2dc1eSMatthew G. Knepley PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 1390d2b2dc1eSMatthew G. Knepley PetscCall(PetscCalloc1(maxDof, &zeroes)); 1391d2b2dc1eSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 1392d2b2dc1eSMatthew G. Knepley PetscCall(PetscFree(zeroes)); 1393d2b2dc1eSMatthew G. Knepley PetscCall(DMPrintLocalVec(dm, "Residual", mesh->printTol, locFbc)); 1394d2b2dc1eSMatthew G. Knepley PetscCall(VecDestroy(&locFbc)); 1395d2b2dc1eSMatthew G. Knepley } 1396d2b2dc1eSMatthew G. Knepley } 1397d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 1398d2b2dc1eSMatthew G. Knepley } 1399d2b2dc1eSMatthew G. Knepley #endif 1400d2b2dc1eSMatthew G. Knepley 1401d2b2dc1eSMatthew G. Knepley /*@ 1402bdd6f66aSToby Isaac DMPlexSNESComputeBoundaryFEM - Form the boundary values for the local input X 1403bdd6f66aSToby Isaac 1404bdd6f66aSToby Isaac Input Parameters: 1405bdd6f66aSToby Isaac + dm - The mesh 1406bdd6f66aSToby Isaac - user - The user context 1407bdd6f66aSToby Isaac 1408bdd6f66aSToby Isaac Output Parameter: 1409bdd6f66aSToby Isaac . X - Local solution 1410bdd6f66aSToby Isaac 1411bdd6f66aSToby Isaac Level: developer 1412bdd6f66aSToby Isaac 1413f6dfbefdSBarry Smith .seealso: `DMPLEX`, `DMPlexComputeJacobianAction()` 1414bdd6f66aSToby Isaac @*/ 1415d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSNESComputeBoundaryFEM(DM dm, Vec X, void *user) 1416d71ae5a4SJacob Faibussowitsch { 1417bdd6f66aSToby Isaac DM plex; 1418bdd6f66aSToby Isaac 1419bdd6f66aSToby Isaac PetscFunctionBegin; 14209566063dSJacob Faibussowitsch PetscCall(DMSNESConvertPlex(dm, &plex, PETSC_TRUE)); 14219566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(plex, PETSC_TRUE, X, PETSC_MIN_REAL, NULL, NULL, NULL)); 14229566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 14233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1424bdd6f66aSToby Isaac } 1425bdd6f66aSToby Isaac 14267a73cf09SMatthew G. Knepley /*@ 14278e3a2eefSMatthew G. Knepley DMSNESComputeJacobianAction - Compute the action of the Jacobian J(X) on Y 14287a73cf09SMatthew G. Knepley 14297a73cf09SMatthew G. Knepley Input Parameters: 1430f6dfbefdSBarry Smith + dm - The `DM` 14317a73cf09SMatthew G. Knepley . X - Local solution vector 14327a73cf09SMatthew G. Knepley . Y - Local input vector 14337a73cf09SMatthew G. Knepley - user - The user context 14347a73cf09SMatthew G. Knepley 14357a73cf09SMatthew G. Knepley Output Parameter: 143669d47153SPierre Jolivet . F - local output vector 14377a73cf09SMatthew G. Knepley 14387a73cf09SMatthew G. Knepley Level: developer 14397a73cf09SMatthew G. Knepley 14408e3a2eefSMatthew G. Knepley Notes: 1441f6dfbefdSBarry Smith Users will typically use `DMSNESCreateJacobianMF()` followed by `MatMult()` instead of calling this routine directly. 14428e3a2eefSMatthew G. Knepley 1443f6dfbefdSBarry Smith .seealso: `DM`, ``DMSNESCreateJacobianMF()`, `DMPlexSNESComputeResidualFEM()` 14447a73cf09SMatthew G. Knepley @*/ 1445d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESComputeJacobianAction(DM dm, Vec X, Vec Y, Vec F, void *user) 1446d71ae5a4SJacob Faibussowitsch { 14478e3a2eefSMatthew G. Knepley DM plex; 14488e3a2eefSMatthew G. Knepley IS allcellIS; 14498e3a2eefSMatthew G. Knepley PetscInt Nds, s; 1450a925c78cSMatthew G. Knepley 1451a925c78cSMatthew G. Knepley PetscFunctionBegin; 14529566063dSJacob Faibussowitsch PetscCall(DMSNESConvertPlex(dm, &plex, PETSC_TRUE)); 14539566063dSJacob Faibussowitsch PetscCall(DMPlexGetAllCells_Internal(plex, &allcellIS)); 14549566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 14558e3a2eefSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 14568e3a2eefSMatthew G. Knepley PetscDS ds; 14578e3a2eefSMatthew G. Knepley DMLabel label; 14588e3a2eefSMatthew G. Knepley IS cellIS; 14597a73cf09SMatthew G. Knepley 146007218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, NULL, &ds, NULL)); 14618e3a2eefSMatthew G. Knepley { 146206ad1575SMatthew G. Knepley PetscWeakFormKind jacmap[4] = {PETSC_WF_G0, PETSC_WF_G1, PETSC_WF_G2, PETSC_WF_G3}; 14638e3a2eefSMatthew G. Knepley PetscWeakForm wf; 14648e3a2eefSMatthew G. Knepley PetscInt Nm = 4, m, Nk = 0, k, kp, off = 0; 146506ad1575SMatthew G. Knepley PetscFormKey *jackeys; 14668e3a2eefSMatthew G. Knepley 14678e3a2eefSMatthew G. Knepley /* Get unique Jacobian keys */ 14688e3a2eefSMatthew G. Knepley for (m = 0; m < Nm; ++m) { 14698e3a2eefSMatthew G. Knepley PetscInt Nkm; 14709566063dSJacob Faibussowitsch PetscCall(PetscHMapFormGetSize(ds->wf->form[jacmap[m]], &Nkm)); 14718e3a2eefSMatthew G. Knepley Nk += Nkm; 14728e3a2eefSMatthew G. Knepley } 14739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nk, &jackeys)); 147448a46eb9SPierre Jolivet for (m = 0; m < Nm; ++m) PetscCall(PetscHMapFormGetKeys(ds->wf->form[jacmap[m]], &off, jackeys)); 147563a3b9bcSJacob Faibussowitsch PetscCheck(off == Nk, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of keys %" PetscInt_FMT " should be %" PetscInt_FMT, off, Nk); 14769566063dSJacob Faibussowitsch PetscCall(PetscFormKeySort(Nk, jackeys)); 14778e3a2eefSMatthew G. Knepley for (k = 0, kp = 1; kp < Nk; ++kp) { 14788e3a2eefSMatthew G. Knepley if ((jackeys[k].label != jackeys[kp].label) || (jackeys[k].value != jackeys[kp].value)) { 14798e3a2eefSMatthew G. Knepley ++k; 14808e3a2eefSMatthew G. Knepley if (kp != k) jackeys[k] = jackeys[kp]; 14818e3a2eefSMatthew G. Knepley } 14828e3a2eefSMatthew G. Knepley } 14838e3a2eefSMatthew G. Knepley Nk = k; 14848e3a2eefSMatthew G. Knepley 14859566063dSJacob Faibussowitsch PetscCall(PetscDSGetWeakForm(ds, &wf)); 14868e3a2eefSMatthew G. Knepley for (k = 0; k < Nk; ++k) { 14878e3a2eefSMatthew G. Knepley DMLabel label = jackeys[k].label; 14888e3a2eefSMatthew G. Knepley PetscInt val = jackeys[k].value; 14898e3a2eefSMatthew G. Knepley 14908e3a2eefSMatthew G. Knepley if (!label) { 14919566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)allcellIS)); 14928e3a2eefSMatthew G. Knepley cellIS = allcellIS; 14937a73cf09SMatthew G. Knepley } else { 14948e3a2eefSMatthew G. Knepley IS pointIS; 1495a925c78cSMatthew G. Knepley 14969566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, val, &pointIS)); 14979566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(allcellIS, pointIS, &cellIS)); 14989566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 1499a925c78cSMatthew G. Knepley } 15009566063dSJacob Faibussowitsch PetscCall(DMPlexComputeJacobian_Action_Internal(plex, jackeys[k], cellIS, 0.0, 0.0, X, NULL, Y, F, user)); 15019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 15028e3a2eefSMatthew G. Knepley } 15039566063dSJacob Faibussowitsch PetscCall(PetscFree(jackeys)); 15048e3a2eefSMatthew G. Knepley } 15058e3a2eefSMatthew G. Knepley } 15069566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 15079566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 15083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1509a925c78cSMatthew G. Knepley } 1510a925c78cSMatthew G. Knepley 151124cdb843SMatthew G. Knepley /*@ 15122fe279fdSBarry Smith DMPlexSNESComputeJacobianFEM - Form the local portion of the Jacobian matrix `Jac` at the local solution `X` using pointwise functions specified by the user. 151324cdb843SMatthew G. Knepley 151424cdb843SMatthew G. Knepley Input Parameters: 15152fe279fdSBarry Smith + dm - The `DM` 151624cdb843SMatthew G. Knepley . X - Local input vector 151724cdb843SMatthew G. Knepley - user - The user context 151824cdb843SMatthew G. Knepley 15192fe279fdSBarry Smith Output Parameters: 15202fe279fdSBarry Smith + Jac - Jacobian matrix 15212fe279fdSBarry Smith - JacP - approximate Jacobian from which the preconditioner will be built, often `Jac` 15222fe279fdSBarry Smith 15232fe279fdSBarry Smith Level: developer 152424cdb843SMatthew G. Knepley 152524cdb843SMatthew G. Knepley Note: 152624cdb843SMatthew G. Knepley We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator, 152724cdb843SMatthew G. Knepley like a GPU, or vectorize on a multicore machine. 152824cdb843SMatthew G. Knepley 1529f6dfbefdSBarry Smith .seealso: `DMPLEX`, `Mat` 153024cdb843SMatthew G. Knepley @*/ 1531d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSNESComputeJacobianFEM(DM dm, Vec X, Mat Jac, Mat JacP, void *user) 1532d71ae5a4SJacob Faibussowitsch { 15336da023fcSToby Isaac DM plex; 1534083401c6SMatthew G. Knepley IS allcellIS; 1535f04eb4edSMatthew G. Knepley PetscBool hasJac, hasPrec; 15366528b96dSMatthew G. Knepley PetscInt Nds, s; 153724cdb843SMatthew G. Knepley 153824cdb843SMatthew G. Knepley PetscFunctionBegin; 15399566063dSJacob Faibussowitsch PetscCall(DMSNESConvertPlex(dm, &plex, PETSC_TRUE)); 15409566063dSJacob Faibussowitsch PetscCall(DMPlexGetAllCells_Internal(plex, &allcellIS)); 15419566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 1542083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 1543083401c6SMatthew G. Knepley PetscDS ds; 1544083401c6SMatthew G. Knepley IS cellIS; 154506ad1575SMatthew G. Knepley PetscFormKey key; 1546083401c6SMatthew G. Knepley 154707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &key.label, NULL, &ds, NULL)); 15486528b96dSMatthew G. Knepley key.value = 0; 15496528b96dSMatthew G. Knepley key.field = 0; 155006ad1575SMatthew G. Knepley key.part = 0; 15516528b96dSMatthew G. Knepley if (!key.label) { 15529566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)allcellIS)); 1553083401c6SMatthew G. Knepley cellIS = allcellIS; 1554083401c6SMatthew G. Knepley } else { 1555083401c6SMatthew G. Knepley IS pointIS; 1556083401c6SMatthew G. Knepley 15576528b96dSMatthew G. Knepley key.value = 1; 15589566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS)); 15599566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(allcellIS, pointIS, &cellIS)); 15609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 1561083401c6SMatthew G. Knepley } 1562083401c6SMatthew G. Knepley if (!s) { 15639566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(ds, &hasJac)); 15649566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(ds, &hasPrec)); 15659566063dSJacob Faibussowitsch if (hasJac && hasPrec) PetscCall(MatZeroEntries(Jac)); 15669566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(JacP)); 1567083401c6SMatthew G. Knepley } 15689566063dSJacob Faibussowitsch PetscCall(DMPlexComputeJacobian_Internal(plex, key, cellIS, 0.0, 0.0, X, NULL, Jac, JacP, user)); 15699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 1570083401c6SMatthew G. Knepley } 15719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 15729566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 15733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 157424cdb843SMatthew G. Knepley } 15751878804aSMatthew G. Knepley 15769371c9d4SSatish Balay struct _DMSNESJacobianMFCtx { 15778e3a2eefSMatthew G. Knepley DM dm; 15788e3a2eefSMatthew G. Knepley Vec X; 15798e3a2eefSMatthew G. Knepley void *ctx; 15808e3a2eefSMatthew G. Knepley }; 15818e3a2eefSMatthew G. Knepley 1582d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSNESJacobianMF_Destroy_Private(Mat A) 1583d71ae5a4SJacob Faibussowitsch { 15848e3a2eefSMatthew G. Knepley struct _DMSNESJacobianMFCtx *ctx; 15858e3a2eefSMatthew G. Knepley 15868e3a2eefSMatthew G. Knepley PetscFunctionBegin; 15879566063dSJacob Faibussowitsch PetscCall(MatShellGetContext(A, &ctx)); 15889566063dSJacob Faibussowitsch PetscCall(MatShellSetContext(A, NULL)); 15899566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ctx->dm)); 15909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ctx->X)); 15919566063dSJacob Faibussowitsch PetscCall(PetscFree(ctx)); 15923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15938e3a2eefSMatthew G. Knepley } 15948e3a2eefSMatthew G. Knepley 1595d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSNESJacobianMF_Mult_Private(Mat A, Vec Y, Vec Z) 1596d71ae5a4SJacob Faibussowitsch { 15978e3a2eefSMatthew G. Knepley struct _DMSNESJacobianMFCtx *ctx; 15988e3a2eefSMatthew G. Knepley 15998e3a2eefSMatthew G. Knepley PetscFunctionBegin; 16009566063dSJacob Faibussowitsch PetscCall(MatShellGetContext(A, &ctx)); 16019566063dSJacob Faibussowitsch PetscCall(DMSNESComputeJacobianAction(ctx->dm, ctx->X, Y, Z, ctx->ctx)); 16023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16038e3a2eefSMatthew G. Knepley } 16048e3a2eefSMatthew G. Knepley 16058e3a2eefSMatthew G. Knepley /*@ 1606f6dfbefdSBarry Smith DMSNESCreateJacobianMF - Create a `Mat` which computes the action of the Jacobian matrix-free 16078e3a2eefSMatthew G. Knepley 1608c3339decSBarry Smith Collective 16098e3a2eefSMatthew G. Knepley 16108e3a2eefSMatthew G. Knepley Input Parameters: 1611f6dfbefdSBarry Smith + dm - The `DM` 16128e3a2eefSMatthew G. Knepley . X - The evaluation point for the Jacobian 16132fe279fdSBarry Smith - user - A user context, or `NULL` 16148e3a2eefSMatthew G. Knepley 16158e3a2eefSMatthew G. Knepley Output Parameter: 1616f6dfbefdSBarry Smith . J - The `Mat` 16178e3a2eefSMatthew G. Knepley 16188e3a2eefSMatthew G. Knepley Level: advanced 16198e3a2eefSMatthew G. Knepley 1620f6dfbefdSBarry Smith Note: 16212fe279fdSBarry Smith Vec `X` is kept in `J`, so updating `X` then updates the evaluation point. 16228e3a2eefSMatthew G. Knepley 1623f6dfbefdSBarry Smith .seealso: `DM`, `DMSNESComputeJacobianAction()` 16248e3a2eefSMatthew G. Knepley @*/ 1625d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCreateJacobianMF(DM dm, Vec X, void *user, Mat *J) 1626d71ae5a4SJacob Faibussowitsch { 16278e3a2eefSMatthew G. Knepley struct _DMSNESJacobianMFCtx *ctx; 16288e3a2eefSMatthew G. Knepley PetscInt n, N; 16298e3a2eefSMatthew G. Knepley 16308e3a2eefSMatthew G. Knepley PetscFunctionBegin; 16319566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)dm), J)); 16329566063dSJacob Faibussowitsch PetscCall(MatSetType(*J, MATSHELL)); 16339566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(X, &n)); 16349566063dSJacob Faibussowitsch PetscCall(VecGetSize(X, &N)); 16359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*J, n, n, N, N)); 16369566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 16379566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)X)); 16389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ctx)); 16398e3a2eefSMatthew G. Knepley ctx->dm = dm; 16408e3a2eefSMatthew G. Knepley ctx->X = X; 16418e3a2eefSMatthew G. Knepley ctx->ctx = user; 16429566063dSJacob Faibussowitsch PetscCall(MatShellSetContext(*J, ctx)); 16439566063dSJacob Faibussowitsch PetscCall(MatShellSetOperation(*J, MATOP_DESTROY, (void (*)(void))DMSNESJacobianMF_Destroy_Private)); 16449566063dSJacob Faibussowitsch PetscCall(MatShellSetOperation(*J, MATOP_MULT, (void (*)(void))DMSNESJacobianMF_Mult_Private)); 16453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16468e3a2eefSMatthew G. Knepley } 16478e3a2eefSMatthew G. Knepley 164838cfc46eSPierre Jolivet /* 164938cfc46eSPierre Jolivet MatComputeNeumannOverlap - Computes an unassembled (Neumann) local overlapping Mat in nonlinear context. 165038cfc46eSPierre Jolivet 165138cfc46eSPierre Jolivet Input Parameters: 16522fe279fdSBarry Smith + X - `SNES` linearization point 165338cfc46eSPierre Jolivet . ovl - index set of overlapping subdomains 165438cfc46eSPierre Jolivet 165538cfc46eSPierre Jolivet Output Parameter: 165638cfc46eSPierre Jolivet . J - unassembled (Neumann) local matrix 165738cfc46eSPierre Jolivet 165838cfc46eSPierre Jolivet Level: intermediate 165938cfc46eSPierre Jolivet 1660db781477SPatrick Sanan .seealso: `DMCreateNeumannOverlap()`, `MATIS`, `PCHPDDMSetAuxiliaryMat()` 166138cfc46eSPierre Jolivet */ 1662d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatComputeNeumannOverlap_Plex(Mat J, PetscReal t, Vec X, Vec X_t, PetscReal s, IS ovl, void *ctx) 1663d71ae5a4SJacob Faibussowitsch { 166438cfc46eSPierre Jolivet SNES snes; 166538cfc46eSPierre Jolivet Mat pJ; 166638cfc46eSPierre Jolivet DM ovldm, origdm; 166738cfc46eSPierre Jolivet DMSNES sdm; 166838cfc46eSPierre Jolivet PetscErrorCode (*bfun)(DM, Vec, void *); 166938cfc46eSPierre Jolivet PetscErrorCode (*jfun)(DM, Vec, Mat, Mat, void *); 167038cfc46eSPierre Jolivet void *bctx, *jctx; 167138cfc46eSPierre Jolivet 167238cfc46eSPierre Jolivet PetscFunctionBegin; 16739566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)ovl, "_DM_Overlap_HPDDM_MATIS", (PetscObject *)&pJ)); 167428b400f6SJacob Faibussowitsch PetscCheck(pJ, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing overlapping Mat"); 16759566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)ovl, "_DM_Original_HPDDM", (PetscObject *)&origdm)); 167628b400f6SJacob Faibussowitsch PetscCheck(origdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing original DM"); 16779566063dSJacob Faibussowitsch PetscCall(MatGetDM(pJ, &ovldm)); 16789566063dSJacob Faibussowitsch PetscCall(DMSNESGetBoundaryLocal(origdm, &bfun, &bctx)); 16799566063dSJacob Faibussowitsch PetscCall(DMSNESSetBoundaryLocal(ovldm, bfun, bctx)); 16809566063dSJacob Faibussowitsch PetscCall(DMSNESGetJacobianLocal(origdm, &jfun, &jctx)); 16819566063dSJacob Faibussowitsch PetscCall(DMSNESSetJacobianLocal(ovldm, jfun, jctx)); 16829566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)ovl, "_DM_Overlap_HPDDM_SNES", (PetscObject *)&snes)); 168338cfc46eSPierre Jolivet if (!snes) { 16849566063dSJacob Faibussowitsch PetscCall(SNESCreate(PetscObjectComm((PetscObject)ovl), &snes)); 16859566063dSJacob Faibussowitsch PetscCall(SNESSetDM(snes, ovldm)); 16869566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)ovl, "_DM_Overlap_HPDDM_SNES", (PetscObject)snes)); 16879566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)snes)); 168838cfc46eSPierre Jolivet } 16899566063dSJacob Faibussowitsch PetscCall(DMGetDMSNES(ovldm, &sdm)); 16909566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(X)); 1691800f99ffSJeremy L Thompson { 1692800f99ffSJeremy L Thompson void *ctx; 1693800f99ffSJeremy L Thompson PetscErrorCode (*J)(SNES, Vec, Mat, Mat, void *); 1694800f99ffSJeremy L Thompson PetscCall(DMSNESGetJacobian(ovldm, &J, &ctx)); 1695800f99ffSJeremy L Thompson PetscCallBack("SNES callback Jacobian", (*J)(snes, X, pJ, pJ, ctx)); 1696800f99ffSJeremy L Thompson } 16979566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(X)); 169838cfc46eSPierre Jolivet /* this is a no-hop, just in case we decide to change the placeholder for the local Neumann matrix */ 169938cfc46eSPierre Jolivet { 170038cfc46eSPierre Jolivet Mat locpJ; 170138cfc46eSPierre Jolivet 17029566063dSJacob Faibussowitsch PetscCall(MatISGetLocalMat(pJ, &locpJ)); 17039566063dSJacob Faibussowitsch PetscCall(MatCopy(locpJ, J, SAME_NONZERO_PATTERN)); 170438cfc46eSPierre Jolivet } 17053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 170638cfc46eSPierre Jolivet } 170738cfc46eSPierre Jolivet 1708a925c78cSMatthew G. Knepley /*@ 1709f6dfbefdSBarry Smith DMPlexSetSNESLocalFEM - Use `DMPLEX`'s internal FEM routines to compute `SNES` boundary values, residual, and Jacobian. 17109f520fc2SToby Isaac 17119f520fc2SToby Isaac Input Parameters: 1712f6dfbefdSBarry Smith + dm - The `DM` object 1713f6dfbefdSBarry Smith . boundaryctx - the user context that will be passed to pointwise evaluation of boundary values (see `PetscDSAddBoundary()`) 1714f6dfbefdSBarry Smith . residualctx - the user context that will be passed to pointwise evaluation of finite element residual computations (see `PetscDSSetResidual()`) 1715f6dfbefdSBarry Smith - jacobianctx - the user context that will be passed to pointwise evaluation of finite element Jacobian construction (see `PetscDSSetJacobian()`) 17161a244344SSatish Balay 17171a244344SSatish Balay Level: developer 1718f6dfbefdSBarry Smith 1719f6dfbefdSBarry Smith .seealso: `DMPLEX`, `SNES` 17209f520fc2SToby Isaac @*/ 1721d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetSNESLocalFEM(DM dm, void *boundaryctx, void *residualctx, void *jacobianctx) 1722d71ae5a4SJacob Faibussowitsch { 1723d2b2dc1eSMatthew G. Knepley PetscBool useCeed; 1724d2b2dc1eSMatthew G. Knepley 17259f520fc2SToby Isaac PetscFunctionBegin; 1726d2b2dc1eSMatthew G. Knepley PetscCall(DMPlexGetUseCeed(dm, &useCeed)); 17279566063dSJacob Faibussowitsch PetscCall(DMSNESSetBoundaryLocal(dm, DMPlexSNESComputeBoundaryFEM, boundaryctx)); 1728d2b2dc1eSMatthew G. Knepley if (useCeed) { 1729d2b2dc1eSMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 1730d2b2dc1eSMatthew G. Knepley PetscCall(DMSNESSetFunctionLocal(dm, DMPlexSNESComputeResidualCEED, residualctx)); 1731d2b2dc1eSMatthew G. Knepley #else 1732d2b2dc1eSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Cannot use CEED traversals without LibCEED. Rerun configure with --download-ceed"); 1733d2b2dc1eSMatthew G. Knepley #endif 1734d2b2dc1eSMatthew G. Knepley } else PetscCall(DMSNESSetFunctionLocal(dm, DMPlexSNESComputeResidualFEM, residualctx)); 17359566063dSJacob Faibussowitsch PetscCall(DMSNESSetJacobianLocal(dm, DMPlexSNESComputeJacobianFEM, jacobianctx)); 17369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm, "MatComputeNeumannOverlap_C", MatComputeNeumannOverlap_Plex)); 17373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17389f520fc2SToby Isaac } 17399f520fc2SToby Isaac 1740f017bcb6SMatthew G. Knepley /*@C 1741f017bcb6SMatthew G. Knepley DMSNESCheckDiscretization - Check the discretization error of the exact solution 1742f017bcb6SMatthew G. Knepley 1743f017bcb6SMatthew G. Knepley Input Parameters: 1744f6dfbefdSBarry Smith + snes - the `SNES` object 1745f6dfbefdSBarry Smith . dm - the `DM` 1746f2cacb80SMatthew G. Knepley . t - the time 1747f6dfbefdSBarry Smith . u - a `DM` vector 1748f0fc11ceSJed Brown - tol - A tolerance for the check, or -1 to print the results instead 1749f017bcb6SMatthew G. Knepley 17502fe279fdSBarry Smith Output Parameter: 17512fe279fdSBarry Smith . error - An array which holds the discretization error in each field, or `NULL` 17522fe279fdSBarry Smith 17532fe279fdSBarry Smith Level: developer 1754f3c94560SMatthew G. Knepley 1755f6dfbefdSBarry Smith Note: 1756f6dfbefdSBarry Smith The user must call `PetscDSSetExactSolution()` beforehand 17577f96f943SMatthew G. Knepley 1758e4094ef1SJacob Faibussowitsch .seealso: `PetscDSSetExactSolution()`, `DNSNESCheckFromOptions()`, `DMSNESCheckResidual()`, `DMSNESCheckJacobian()` 1759f017bcb6SMatthew G. Knepley @*/ 1760d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCheckDiscretization(SNES snes, DM dm, PetscReal t, Vec u, PetscReal tol, PetscReal error[]) 1761d71ae5a4SJacob Faibussowitsch { 1762f017bcb6SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 1763f017bcb6SMatthew G. Knepley void **ectxs; 1764f3c94560SMatthew G. Knepley PetscReal *err; 17657f96f943SMatthew G. Knepley MPI_Comm comm; 17667f96f943SMatthew G. Knepley PetscInt Nf, f; 17671878804aSMatthew G. Knepley 17681878804aSMatthew G. Knepley PetscFunctionBegin; 1769f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(snes, SNES_CLASSID, 1); 1770f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 1771064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(u, VEC_CLASSID, 4); 17724f572ea9SToby Isaac if (error) PetscAssertPointer(error, 6); 17737f96f943SMatthew G. Knepley 17749566063dSJacob Faibussowitsch PetscCall(DMComputeExactSolution(dm, t, u, NULL)); 17759566063dSJacob Faibussowitsch PetscCall(VecViewFromOptions(u, NULL, "-vec_view")); 17767f96f943SMatthew G. Knepley 17779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)snes, &comm)); 17789566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 17799566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(Nf, &exacts, Nf, &ectxs, PetscMax(1, Nf), &err)); 17807f96f943SMatthew G. Knepley { 17817f96f943SMatthew G. Knepley PetscInt Nds, s; 17827f96f943SMatthew G. Knepley 17839566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 1784083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 17857f96f943SMatthew G. Knepley PetscDS ds; 1786083401c6SMatthew G. Knepley DMLabel label; 1787083401c6SMatthew G. Knepley IS fieldIS; 17887f96f943SMatthew G. Knepley const PetscInt *fields; 17897f96f943SMatthew G. Knepley PetscInt dsNf, f; 1790083401c6SMatthew G. Knepley 179107218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 17929566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 17939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 1794083401c6SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 1795083401c6SMatthew G. Knepley const PetscInt field = fields[f]; 17969566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exacts[field], &ectxs[field])); 1797083401c6SMatthew G. Knepley } 17989566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 1799083401c6SMatthew G. Knepley } 1800083401c6SMatthew G. Knepley } 1801f017bcb6SMatthew G. Knepley if (Nf > 1) { 18029566063dSJacob Faibussowitsch PetscCall(DMComputeL2FieldDiff(dm, t, exacts, ectxs, u, err)); 1803f017bcb6SMatthew G. Knepley if (tol >= 0.0) { 1804ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(err[f] <= tol, comm, PETSC_ERR_ARG_WRONG, "L_2 Error %g for field %" PetscInt_FMT " exceeds tolerance %g", (double)err[f], f, (double)tol); 1805b878532fSMatthew G. Knepley } else if (error) { 1806b878532fSMatthew G. Knepley for (f = 0; f < Nf; ++f) error[f] = err[f]; 18071878804aSMatthew G. Knepley } else { 18089566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "L_2 Error: [")); 1809f017bcb6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 18109566063dSJacob Faibussowitsch if (f) PetscCall(PetscPrintf(comm, ", ")); 18119566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "%g", (double)err[f])); 18121878804aSMatthew G. Knepley } 18139566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "]\n")); 1814f017bcb6SMatthew G. Knepley } 1815f017bcb6SMatthew G. Knepley } else { 18169566063dSJacob Faibussowitsch PetscCall(DMComputeL2Diff(dm, t, exacts, ectxs, u, &err[0])); 1817f017bcb6SMatthew G. Knepley if (tol >= 0.0) { 181808401ef6SPierre Jolivet PetscCheck(err[0] <= tol, comm, PETSC_ERR_ARG_WRONG, "L_2 Error %g exceeds tolerance %g", (double)err[0], (double)tol); 1819b878532fSMatthew G. Knepley } else if (error) { 1820b878532fSMatthew G. Knepley error[0] = err[0]; 1821f017bcb6SMatthew G. Knepley } else { 18229566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "L_2 Error: %g\n", (double)err[0])); 1823f017bcb6SMatthew G. Knepley } 1824f017bcb6SMatthew G. Knepley } 18259566063dSJacob Faibussowitsch PetscCall(PetscFree3(exacts, ectxs, err)); 18263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1827f017bcb6SMatthew G. Knepley } 1828f017bcb6SMatthew G. Knepley 1829f017bcb6SMatthew G. Knepley /*@C 1830f017bcb6SMatthew G. Knepley DMSNESCheckResidual - Check the residual of the exact solution 1831f017bcb6SMatthew G. Knepley 1832f017bcb6SMatthew G. Knepley Input Parameters: 1833f6dfbefdSBarry Smith + snes - the `SNES` object 1834f6dfbefdSBarry Smith . dm - the `DM` 1835f6dfbefdSBarry Smith . u - a `DM` vector 1836f0fc11ceSJed Brown - tol - A tolerance for the check, or -1 to print the results instead 1837f017bcb6SMatthew G. Knepley 1838f6dfbefdSBarry Smith Output Parameter: 18392fe279fdSBarry Smith . residual - The residual norm of the exact solution, or `NULL` 1840f3c94560SMatthew G. Knepley 1841f017bcb6SMatthew G. Knepley Level: developer 1842f017bcb6SMatthew G. Knepley 1843db781477SPatrick Sanan .seealso: `DNSNESCheckFromOptions()`, `DMSNESCheckDiscretization()`, `DMSNESCheckJacobian()` 1844f017bcb6SMatthew G. Knepley @*/ 1845d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCheckResidual(SNES snes, DM dm, Vec u, PetscReal tol, PetscReal *residual) 1846d71ae5a4SJacob Faibussowitsch { 1847f017bcb6SMatthew G. Knepley MPI_Comm comm; 1848f017bcb6SMatthew G. Knepley Vec r; 1849f017bcb6SMatthew G. Knepley PetscReal res; 1850f017bcb6SMatthew G. Knepley 1851f017bcb6SMatthew G. Knepley PetscFunctionBegin; 1852f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(snes, SNES_CLASSID, 1); 1853f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 1854f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 18554f572ea9SToby Isaac if (residual) PetscAssertPointer(residual, 5); 18569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)snes, &comm)); 18579566063dSJacob Faibussowitsch PetscCall(DMComputeExactSolution(dm, 0.0, u, NULL)); 18589566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &r)); 18599566063dSJacob Faibussowitsch PetscCall(SNESComputeFunction(snes, u, r)); 18609566063dSJacob Faibussowitsch PetscCall(VecNorm(r, NORM_2, &res)); 1861f017bcb6SMatthew G. Knepley if (tol >= 0.0) { 186208401ef6SPierre Jolivet PetscCheck(res <= tol, comm, PETSC_ERR_ARG_WRONG, "L_2 Residual %g exceeds tolerance %g", (double)res, (double)tol); 1863b878532fSMatthew G. Knepley } else if (residual) { 1864b878532fSMatthew G. Knepley *residual = res; 1865f017bcb6SMatthew G. Knepley } else { 18669566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "L_2 Residual: %g\n", (double)res)); 186793ec0da9SPierre Jolivet PetscCall(VecFilter(r, 1.0e-10)); 18689566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)r, "Initial Residual")); 18699566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)r, "res_")); 18709566063dSJacob Faibussowitsch PetscCall(VecViewFromOptions(r, NULL, "-vec_view")); 1871f017bcb6SMatthew G. Knepley } 18729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&r)); 18733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1874f017bcb6SMatthew G. Knepley } 1875f017bcb6SMatthew G. Knepley 1876f017bcb6SMatthew G. Knepley /*@C 1877f3c94560SMatthew G. Knepley DMSNESCheckJacobian - Check the Jacobian of the exact solution against the residual using the Taylor Test 1878f017bcb6SMatthew G. Knepley 1879f017bcb6SMatthew G. Knepley Input Parameters: 1880f6dfbefdSBarry Smith + snes - the `SNES` object 1881f6dfbefdSBarry Smith . dm - the `DM` 1882f6dfbefdSBarry Smith . u - a `DM` vector 1883f0fc11ceSJed Brown - tol - A tolerance for the check, or -1 to print the results instead 1884f017bcb6SMatthew G. Knepley 1885f3c94560SMatthew G. Knepley Output Parameters: 18862fe279fdSBarry Smith + isLinear - Flag indicaing that the function looks linear, or `NULL` 18872fe279fdSBarry Smith - convRate - The rate of convergence of the linear model, or `NULL` 1888f3c94560SMatthew G. Knepley 1889f017bcb6SMatthew G. Knepley Level: developer 1890f017bcb6SMatthew G. Knepley 1891db781477SPatrick Sanan .seealso: `DNSNESCheckFromOptions()`, `DMSNESCheckDiscretization()`, `DMSNESCheckResidual()` 1892f017bcb6SMatthew G. Knepley @*/ 1893d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCheckJacobian(SNES snes, DM dm, Vec u, PetscReal tol, PetscBool *isLinear, PetscReal *convRate) 1894d71ae5a4SJacob Faibussowitsch { 1895f017bcb6SMatthew G. Knepley MPI_Comm comm; 1896f017bcb6SMatthew G. Knepley PetscDS ds; 1897f017bcb6SMatthew G. Knepley Mat J, M; 1898f017bcb6SMatthew G. Knepley MatNullSpace nullspace; 1899f3c94560SMatthew G. Knepley PetscReal slope, intercept; 19007f96f943SMatthew G. Knepley PetscBool hasJac, hasPrec, isLin = PETSC_FALSE; 1901f017bcb6SMatthew G. Knepley 1902f017bcb6SMatthew G. Knepley PetscFunctionBegin; 1903f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(snes, SNES_CLASSID, 1); 1904f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 1905f3c94560SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 19064f572ea9SToby Isaac if (isLinear) PetscAssertPointer(isLinear, 5); 19074f572ea9SToby Isaac if (convRate) PetscAssertPointer(convRate, 6); 19089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)snes, &comm)); 19099566063dSJacob Faibussowitsch PetscCall(DMComputeExactSolution(dm, 0.0, u, NULL)); 1910f017bcb6SMatthew G. Knepley /* Create and view matrices */ 19119566063dSJacob Faibussowitsch PetscCall(DMCreateMatrix(dm, &J)); 19129566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 19139566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(ds, &hasJac)); 19149566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(ds, &hasPrec)); 1915282e7bb4SMatthew G. Knepley if (hasJac && hasPrec) { 19169566063dSJacob Faibussowitsch PetscCall(DMCreateMatrix(dm, &M)); 19179566063dSJacob Faibussowitsch PetscCall(SNESComputeJacobian(snes, u, J, M)); 19189566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)M, "Preconditioning Matrix")); 19199566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)M, "jacpre_")); 19209566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(M, NULL, "-mat_view")); 19219566063dSJacob Faibussowitsch PetscCall(MatDestroy(&M)); 1922282e7bb4SMatthew G. Knepley } else { 19239566063dSJacob Faibussowitsch PetscCall(SNESComputeJacobian(snes, u, J, J)); 1924282e7bb4SMatthew G. Knepley } 19259566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)J, "Jacobian")); 19269566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)J, "jac_")); 19279566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(J, NULL, "-mat_view")); 1928f017bcb6SMatthew G. Knepley /* Check nullspace */ 19299566063dSJacob Faibussowitsch PetscCall(MatGetNullSpace(J, &nullspace)); 1930f017bcb6SMatthew G. Knepley if (nullspace) { 19311878804aSMatthew G. Knepley PetscBool isNull; 19329566063dSJacob Faibussowitsch PetscCall(MatNullSpaceTest(nullspace, J, &isNull)); 193328b400f6SJacob Faibussowitsch PetscCheck(isNull, comm, PETSC_ERR_PLIB, "The null space calculated for the system operator is invalid."); 19341878804aSMatthew G. Knepley } 1935f017bcb6SMatthew G. Knepley /* Taylor test */ 1936f017bcb6SMatthew G. Knepley { 1937f017bcb6SMatthew G. Knepley PetscRandom rand; 1938f017bcb6SMatthew G. Knepley Vec du, uhat, r, rhat, df; 1939f3c94560SMatthew G. Knepley PetscReal h; 1940f017bcb6SMatthew G. Knepley PetscReal *es, *hs, *errors; 1941f017bcb6SMatthew G. Knepley PetscReal hMax = 1.0, hMin = 1e-6, hMult = 0.1; 1942f017bcb6SMatthew G. Knepley PetscInt Nv, v; 1943f017bcb6SMatthew G. Knepley 1944f017bcb6SMatthew G. Knepley /* Choose a perturbation direction */ 19459566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(comm, &rand)); 19469566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &du)); 19479566063dSJacob Faibussowitsch PetscCall(VecSetRandom(du, rand)); 19489566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&rand)); 19499566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &df)); 19509566063dSJacob Faibussowitsch PetscCall(MatMult(J, du, df)); 1951f017bcb6SMatthew G. Knepley /* Evaluate residual at u, F(u), save in vector r */ 19529566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &r)); 19539566063dSJacob Faibussowitsch PetscCall(SNESComputeFunction(snes, u, r)); 1954f017bcb6SMatthew G. Knepley /* Look at the convergence of our Taylor approximation as we approach u */ 19559371c9d4SSatish Balay for (h = hMax, Nv = 0; h >= hMin; h *= hMult, ++Nv) 19569371c9d4SSatish Balay ; 19579566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(Nv, &es, Nv, &hs, Nv, &errors)); 19589566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &uhat)); 19599566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &rhat)); 1960f017bcb6SMatthew G. Knepley for (h = hMax, Nv = 0; h >= hMin; h *= hMult, ++Nv) { 19619566063dSJacob Faibussowitsch PetscCall(VecWAXPY(uhat, h, du, u)); 1962f017bcb6SMatthew G. Knepley /* F(\hat u) \approx F(u) + J(u) (uhat - u) = F(u) + h * J(u) du */ 19639566063dSJacob Faibussowitsch PetscCall(SNESComputeFunction(snes, uhat, rhat)); 19649566063dSJacob Faibussowitsch PetscCall(VecAXPBYPCZ(rhat, -1.0, -h, 1.0, r, df)); 19659566063dSJacob Faibussowitsch PetscCall(VecNorm(rhat, NORM_2, &errors[Nv])); 1966f017bcb6SMatthew G. Knepley 196738d69901SMatthew G. Knepley es[Nv] = errors[Nv] == 0 ? -16.0 : PetscLog10Real(errors[Nv]); 1968f017bcb6SMatthew G. Knepley hs[Nv] = PetscLog10Real(h); 1969f017bcb6SMatthew G. Knepley } 19709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&uhat)); 19719566063dSJacob Faibussowitsch PetscCall(VecDestroy(&rhat)); 19729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&df)); 19739566063dSJacob Faibussowitsch PetscCall(VecDestroy(&r)); 19749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&du)); 1975f017bcb6SMatthew G. Knepley for (v = 0; v < Nv; ++v) { 1976f017bcb6SMatthew G. Knepley if ((tol >= 0) && (errors[v] > tol)) break; 1977f017bcb6SMatthew G. Knepley else if (errors[v] > PETSC_SMALL) break; 1978f017bcb6SMatthew G. Knepley } 1979f3c94560SMatthew G. Knepley if (v == Nv) isLin = PETSC_TRUE; 19809566063dSJacob Faibussowitsch PetscCall(PetscLinearRegression(Nv, hs, es, &slope, &intercept)); 19819566063dSJacob Faibussowitsch PetscCall(PetscFree3(es, hs, errors)); 1982f017bcb6SMatthew G. Knepley /* Slope should be about 2 */ 1983f017bcb6SMatthew G. Knepley if (tol >= 0) { 19840b121fc5SBarry Smith PetscCheck(isLin || PetscAbsReal(2 - slope) <= tol, comm, PETSC_ERR_ARG_WRONG, "Taylor approximation convergence rate should be 2, not %0.2f", (double)slope); 1985b878532fSMatthew G. Knepley } else if (isLinear || convRate) { 1986b878532fSMatthew G. Knepley if (isLinear) *isLinear = isLin; 1987b878532fSMatthew G. Knepley if (convRate) *convRate = slope; 1988f017bcb6SMatthew G. Knepley } else { 19899566063dSJacob Faibussowitsch if (!isLin) PetscCall(PetscPrintf(comm, "Taylor approximation converging at order %3.2f\n", (double)slope)); 19909566063dSJacob Faibussowitsch else PetscCall(PetscPrintf(comm, "Function appears to be linear\n")); 1991f017bcb6SMatthew G. Knepley } 1992f017bcb6SMatthew G. Knepley } 19939566063dSJacob Faibussowitsch PetscCall(MatDestroy(&J)); 19943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19951878804aSMatthew G. Knepley } 19961878804aSMatthew G. Knepley 1997d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCheck_Internal(SNES snes, DM dm, Vec u) 1998d71ae5a4SJacob Faibussowitsch { 1999f017bcb6SMatthew G. Knepley PetscFunctionBegin; 20009566063dSJacob Faibussowitsch PetscCall(DMSNESCheckDiscretization(snes, dm, 0.0, u, -1.0, NULL)); 20019566063dSJacob Faibussowitsch PetscCall(DMSNESCheckResidual(snes, dm, u, -1.0, NULL)); 20029566063dSJacob Faibussowitsch PetscCall(DMSNESCheckJacobian(snes, dm, u, -1.0, NULL, NULL)); 20033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2004f017bcb6SMatthew G. Knepley } 2005f017bcb6SMatthew G. Knepley 2006bee9a294SMatthew G. Knepley /*@C 2007bee9a294SMatthew G. Knepley DMSNESCheckFromOptions - Check the residual and Jacobian functions using the exact solution by outputting some diagnostic information 2008bee9a294SMatthew G. Knepley 2009bee9a294SMatthew G. Knepley Input Parameters: 2010f6dfbefdSBarry Smith + snes - the `SNES` object 2011f6dfbefdSBarry Smith - u - representative `SNES` vector 20127f96f943SMatthew G. Knepley 20132fe279fdSBarry Smith Level: developer 20142fe279fdSBarry Smith 2015f6dfbefdSBarry Smith Note: 2016f6dfbefdSBarry Smith The user must call `PetscDSSetExactSolution()` beforehand 2017bee9a294SMatthew G. Knepley 20182fe279fdSBarry Smith .seealso: `SNES`, `DM` 2019bee9a294SMatthew G. Knepley @*/ 2020d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESCheckFromOptions(SNES snes, Vec u) 2021d71ae5a4SJacob Faibussowitsch { 20221878804aSMatthew G. Knepley DM dm; 20231878804aSMatthew G. Knepley Vec sol; 20241878804aSMatthew G. Knepley PetscBool check; 20251878804aSMatthew G. Knepley 20261878804aSMatthew G. Knepley PetscFunctionBegin; 20279566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)snes)->options, ((PetscObject)snes)->prefix, "-dmsnes_check", &check)); 20283ba16761SJacob Faibussowitsch if (!check) PetscFunctionReturn(PETSC_SUCCESS); 20299566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 20309566063dSJacob Faibussowitsch PetscCall(VecDuplicate(u, &sol)); 20319566063dSJacob Faibussowitsch PetscCall(SNESSetSolution(snes, sol)); 20329566063dSJacob Faibussowitsch PetscCall(DMSNESCheck_Internal(snes, dm, sol)); 20339566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sol)); 20343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2035552f7358SJed Brown } 2036