15f80ce2aSJacob Faibussowitsch #include <petsc/private/petscimpl.h> 2af0996ceSBarry Smith #include <petsc/private/bagimpl.h> /*I "petscbag.h" I*/ 3665c2dedSJed Brown #include <petscviewer.h> 45c6c1daeSBarry Smith 55c6c1daeSBarry Smith /* 65c6c1daeSBarry Smith Adds item to the linked list in a bag 75c6c1daeSBarry Smith */ 8d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscBagRegister_Private(PetscBag bag, PetscBagItem item, const char *name, const char *help) 9d71ae5a4SJacob Faibussowitsch { 105c6c1daeSBarry Smith PetscFunctionBegin; 119566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(item->name, name, PETSC_BAG_NAME_LENGTH - 1)); 129566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(item->help, help, PETSC_BAG_HELP_LENGTH - 1)); 135f80ce2aSJacob Faibussowitsch if (bag->bagitems) { 145c6c1daeSBarry Smith PetscBagItem nitem = bag->bagitems; 155f80ce2aSJacob Faibussowitsch 165f80ce2aSJacob Faibussowitsch while (nitem->next) nitem = nitem->next; 175c6c1daeSBarry Smith nitem->next = item; 185f80ce2aSJacob Faibussowitsch } else bag->bagitems = item; 195c6c1daeSBarry Smith bag->count++; 203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215c6c1daeSBarry Smith } 225c6c1daeSBarry Smith 235c6c1daeSBarry Smith /*@C 24811af0c4SBarry Smith PetscBagRegisterEnum - add an enum value to a `PetscBag` 255c6c1daeSBarry Smith 26c3339decSBarry Smith Logically Collective 275c6c1daeSBarry Smith 28d8d19677SJose E. Roman Input Parameters: 295c6c1daeSBarry Smith + bag - the bag of values 30811af0c4SBarry Smith . addr - location of enum in struct, for example `¶ms->dt` 315c6c1daeSBarry Smith . list - array of strings containing names of enum values followed by enum name followed by enum prefix 32811af0c4SBarry Smith . mdefault - the initial value, cast with (`PetscEnum`) 332fe279fdSBarry Smith . name - the name of the item 345c6c1daeSBarry Smith - help - longer string with more information about the value 355c6c1daeSBarry Smith 365c6c1daeSBarry Smith Level: beginner 375c6c1daeSBarry Smith 38db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 39db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 40db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()` 415c6c1daeSBarry Smith @*/ 42d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterEnum(PetscBag bag, void *addr, const char *const *list, PetscEnum mdefault, const char *name, const char *help) 43d71ae5a4SJacob Faibussowitsch { 445c6c1daeSBarry Smith PetscBagItem item; 455c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 465c6c1daeSBarry Smith PetscBool printhelp; 475c6c1daeSBarry Smith PetscInt i = 0; 485c6c1daeSBarry Smith 495c6c1daeSBarry Smith PetscFunctionBegin; 504f572ea9SToby Isaac PetscAssertPointer(bag, 1); 514f572ea9SToby Isaac PetscAssertPointer(addr, 2); 524f572ea9SToby Isaac PetscAssertPointer(list, 3); 534f572ea9SToby Isaac PetscAssertPointer(name, 5); 544f572ea9SToby Isaac PetscAssertPointer(help, 6); 555c6c1daeSBarry Smith nname[0] = '-'; 565c6c1daeSBarry Smith nname[1] = 0; 579566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 589566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 595c6c1daeSBarry Smith if (printhelp) { 60fbccb6d4SPierre Jolivet while (list[i++]); 619566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%s>: (%s) %s (choose one of) ", bag->bagprefix ? bag->bagprefix : "", name, list[mdefault], list[i - 3], help)); 629566063dSJacob Faibussowitsch for (i = 0; list[i + 2]; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " %s", list[i])); 639566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, "\n")); 645c6c1daeSBarry Smith } 659566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetEnum(NULL, bag->bagprefix, nname, list, &mdefault, NULL)); 665c6c1daeSBarry Smith 679566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 685c6c1daeSBarry Smith item->dtype = PETSC_ENUM; 696497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 705f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 7102c9f0b5SLisandro Dalcin item->next = NULL; 725c6c1daeSBarry Smith item->msize = 1; 73*835f2295SStefano Zampini PetscCall(PetscStrArrayallocpy(list, &item->list)); 745c6c1daeSBarry Smith *(PetscEnum *)addr = mdefault; 759566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 775c6c1daeSBarry Smith } 785c6c1daeSBarry Smith 795c6c1daeSBarry Smith /*@C 8009cbc92aSBarry Smith PetscBagRegisterIntArray - add a `PetscInt` array to a `PetscBag` 815c6c1daeSBarry Smith 82c3339decSBarry Smith Logically Collective 835c6c1daeSBarry Smith 84d8d19677SJose E. Roman Input Parameters: 855c6c1daeSBarry Smith + bag - the bag of values 86811af0c4SBarry Smith . addr - location of integer in struct, for example `¶ms->i` 875c6c1daeSBarry Smith . msize - number of entries in array 88811af0c4SBarry Smith . name - name of the array 895c6c1daeSBarry Smith - help - longer string with more information about the value 905c6c1daeSBarry Smith 915c6c1daeSBarry Smith Level: beginner 925c6c1daeSBarry Smith 93db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 94db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 95db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 965c6c1daeSBarry Smith @*/ 97d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterIntArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help) 98d71ae5a4SJacob Faibussowitsch { 995c6c1daeSBarry Smith PetscBagItem item; 1005c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 1015c6c1daeSBarry Smith PetscBool printhelp; 1025c6c1daeSBarry Smith PetscInt i, tmp = msize; 1035c6c1daeSBarry Smith 1045c6c1daeSBarry Smith PetscFunctionBegin; 1054f572ea9SToby Isaac PetscAssertPointer(bag, 1); 1064f572ea9SToby Isaac PetscAssertPointer(addr, 2); 1074f572ea9SToby Isaac PetscAssertPointer(name, 4); 1084f572ea9SToby Isaac PetscAssertPointer(help, 5); 1095c6c1daeSBarry Smith nname[0] = '-'; 1105c6c1daeSBarry Smith nname[1] = 0; 1119566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 1129566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 1135c6c1daeSBarry Smith if (printhelp) { 1149566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <", bag->bagprefix ? bag->bagprefix : "", name)); 11548a46eb9SPierre Jolivet for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%" PetscInt_FMT " ", *((PetscInt *)addr) + i)); 1169566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help)); 1175c6c1daeSBarry Smith } 1189566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(NULL, bag->bagprefix, nname, (PetscInt *)addr, &tmp, NULL)); 1195c6c1daeSBarry Smith 1209566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 1215c6c1daeSBarry Smith item->dtype = PETSC_INT; 1226497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 1235f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 12402c9f0b5SLisandro Dalcin item->next = NULL; 1255c6c1daeSBarry Smith item->msize = msize; 1269566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 1273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1285c6c1daeSBarry Smith } 1295c6c1daeSBarry Smith 1305c6c1daeSBarry Smith /*@C 13109cbc92aSBarry Smith PetscBagRegisterRealArray - add a `PetscReal` array to a `PetscBag` 1325c6c1daeSBarry Smith 133c3339decSBarry Smith Logically Collective 1345c6c1daeSBarry Smith 135d8d19677SJose E. Roman Input Parameters: 1365c6c1daeSBarry Smith + bag - the bag of values 137811af0c4SBarry Smith . addr - location of real array in struct, for example `¶ms->d` 138811af0c4SBarry Smith . msize - number of entries in the array 139811af0c4SBarry Smith . name - name of the array 1405c6c1daeSBarry Smith - help - longer string with more information about the value 1415c6c1daeSBarry Smith 1425c6c1daeSBarry Smith Level: beginner 1435c6c1daeSBarry Smith 144db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 145db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 146db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 1475c6c1daeSBarry Smith @*/ 148d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterRealArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help) 149d71ae5a4SJacob Faibussowitsch { 1505c6c1daeSBarry Smith PetscBagItem item; 1515c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 1525c6c1daeSBarry Smith PetscBool printhelp; 1535c6c1daeSBarry Smith PetscInt i, tmp = msize; 1545c6c1daeSBarry Smith 1555c6c1daeSBarry Smith PetscFunctionBegin; 1564f572ea9SToby Isaac PetscAssertPointer(bag, 1); 1574f572ea9SToby Isaac PetscAssertPointer(addr, 2); 1584f572ea9SToby Isaac PetscAssertPointer(name, 4); 1594f572ea9SToby Isaac PetscAssertPointer(help, 5); 1605c6c1daeSBarry Smith nname[0] = '-'; 1615c6c1daeSBarry Smith nname[1] = 0; 1629566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 1639566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 1645c6c1daeSBarry Smith if (printhelp) { 1659566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <", bag->bagprefix ? bag->bagprefix : "", name)); 1666497c311SBarry Smith for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%g ", (double)(*((PetscReal *)addr) + i))); 1679566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help)); 1685c6c1daeSBarry Smith } 1699566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetRealArray(NULL, bag->bagprefix, nname, (PetscReal *)addr, &tmp, NULL)); 1705c6c1daeSBarry Smith 1719566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 1725c6c1daeSBarry Smith item->dtype = PETSC_REAL; 1736497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 1745f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 17502c9f0b5SLisandro Dalcin item->next = NULL; 1765c6c1daeSBarry Smith item->msize = msize; 1779566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1795c6c1daeSBarry Smith } 1805c6c1daeSBarry Smith 1815c6c1daeSBarry Smith /*@C 18209cbc92aSBarry Smith PetscBagRegisterInt - add a `PetscInt` value to a `PetscBag` 1835c6c1daeSBarry Smith 184c3339decSBarry Smith Logically Collective 1855c6c1daeSBarry Smith 186d8d19677SJose E. Roman Input Parameters: 1875c6c1daeSBarry Smith + bag - the bag of values 188811af0c4SBarry Smith . addr - location of integer in struct, for example `¶ms->i` 1895c6c1daeSBarry Smith . mdefault - the initial value 1905c6c1daeSBarry Smith . name - name of the integer 1915c6c1daeSBarry Smith - help - longer string with more information about the value 1925c6c1daeSBarry Smith 1935c6c1daeSBarry Smith Level: beginner 1945c6c1daeSBarry Smith 195db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 196db781477SPatrick Sanan `PetscBagRegisterInt64()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 197db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 1985c6c1daeSBarry Smith @*/ 199d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterInt(PetscBag bag, void *addr, PetscInt mdefault, const char *name, const char *help) 200d71ae5a4SJacob Faibussowitsch { 2015c6c1daeSBarry Smith PetscBagItem item; 2025c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 2035c6c1daeSBarry Smith PetscBool printhelp; 2045c6c1daeSBarry Smith 2055c6c1daeSBarry Smith PetscFunctionBegin; 2064f572ea9SToby Isaac PetscAssertPointer(bag, 1); 2074f572ea9SToby Isaac PetscAssertPointer(addr, 2); 2084f572ea9SToby Isaac PetscAssertPointer(name, 4); 2094f572ea9SToby Isaac PetscAssertPointer(help, 5); 2105c6c1daeSBarry Smith nname[0] = '-'; 2115c6c1daeSBarry Smith nname[1] = 0; 2129566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 2139566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 21448a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%" PetscInt_FMT ">: %s \n", bag->bagprefix ? bag->bagprefix : "", name, mdefault, help)); 2159566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, bag->bagprefix, nname, &mdefault, NULL)); 2165c6c1daeSBarry Smith 2179566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 2185c6c1daeSBarry Smith item->dtype = PETSC_INT; 2196497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 2205f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 22102c9f0b5SLisandro Dalcin item->next = NULL; 2225c6c1daeSBarry Smith item->msize = 1; 2235c6c1daeSBarry Smith *(PetscInt *)addr = mdefault; 2249566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 2253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2265c6c1daeSBarry Smith } 2275c6c1daeSBarry Smith 2280d349d43SBarry Smith /*@C 229811af0c4SBarry Smith PetscBagRegisterInt64 - add a `PetscInt64` value to a `PetscBag` 2300d349d43SBarry Smith 231c3339decSBarry Smith Logically Collective 2320d349d43SBarry Smith 233d8d19677SJose E. Roman Input Parameters: 2340d349d43SBarry Smith + bag - the bag of values 235811af0c4SBarry Smith . addr - location of integer in struct, for example `¶ms->i` 2360d349d43SBarry Smith . mdefault - the initial value 2370d349d43SBarry Smith . name - name of the integer 2380d349d43SBarry Smith - help - longer string with more information about the value 2390d349d43SBarry Smith 2400d349d43SBarry Smith Level: beginner 2410d349d43SBarry Smith 242db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 243db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 244db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 2450d349d43SBarry Smith @*/ 246d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterInt64(PetscBag bag, void *addr, PetscInt64 mdefault, const char *name, const char *help) 247d71ae5a4SJacob Faibussowitsch { 2480d349d43SBarry Smith PetscBagItem item; 2490d349d43SBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 2500d349d43SBarry Smith PetscBool printhelp; 251*835f2295SStefano Zampini PetscInt odefault; 2520d349d43SBarry Smith PetscBool flg; 2530d349d43SBarry Smith 2540d349d43SBarry Smith PetscFunctionBegin; 2550d349d43SBarry Smith nname[0] = '-'; 2560d349d43SBarry Smith nname[1] = 0; 257*835f2295SStefano Zampini 258*835f2295SStefano Zampini PetscCall(PetscIntCast(mdefault, &odefault)); 2599566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 2609566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 26148a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%" PetscInt_FMT ">: %s \n", bag->bagprefix ? bag->bagprefix : "", name, odefault, help)); 2629566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, bag->bagprefix, nname, &odefault, &flg)); 263*835f2295SStefano Zampini if (flg) mdefault = odefault; 2640d349d43SBarry Smith 2659566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 2660d349d43SBarry Smith item->dtype = PETSC_INT; 2676497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 2685f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 26902c9f0b5SLisandro Dalcin item->next = NULL; 2700d349d43SBarry Smith item->msize = 1; 271bafee8b4SSatish Balay *(PetscInt64 *)addr = mdefault; 2729566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 2733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2740d349d43SBarry Smith } 2750d349d43SBarry Smith 276dd66f111SBlaise Bourdin /*@C 277811af0c4SBarry Smith PetscBagRegisterBoolArray - add a n `PetscBool` values to a `PetscBag` 278dd66f111SBlaise Bourdin 279c3339decSBarry Smith Logically Collective 280dd66f111SBlaise Bourdin 281d8d19677SJose E. Roman Input Parameters: 282dd66f111SBlaise Bourdin + bag - the bag of values 283811af0c4SBarry Smith . addr - location of boolean array in struct, for example `¶ms->b` 284dd66f111SBlaise Bourdin . msize - number of entries in array 285dd66f111SBlaise Bourdin . name - name of the boolean array 286dd66f111SBlaise Bourdin - help - longer string with more information about the value 287dd66f111SBlaise Bourdin 288dd66f111SBlaise Bourdin Level: beginner 289dd66f111SBlaise Bourdin 290db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 291db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 292db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 293dd66f111SBlaise Bourdin @*/ 294d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterBoolArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help) 295d71ae5a4SJacob Faibussowitsch { 296dd66f111SBlaise Bourdin PetscBagItem item; 297dd66f111SBlaise Bourdin char nname[PETSC_BAG_NAME_LENGTH + 1]; 298dd66f111SBlaise Bourdin PetscBool printhelp; 299dd66f111SBlaise Bourdin PetscInt i, tmp = msize; 300dd66f111SBlaise Bourdin 301dd66f111SBlaise Bourdin PetscFunctionBegin; 3024f572ea9SToby Isaac PetscAssertPointer(bag, 1); 3034f572ea9SToby Isaac PetscAssertPointer(addr, 2); 3044f572ea9SToby Isaac PetscAssertPointer(name, 4); 3054f572ea9SToby Isaac PetscAssertPointer(help, 5); 306dd66f111SBlaise Bourdin nname[0] = '-'; 307dd66f111SBlaise Bourdin nname[1] = 0; 3089566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 3099566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 310dd66f111SBlaise Bourdin if (printhelp) { 3119566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <", bag->bagprefix ? bag->bagprefix : "", name)); 31248a46eb9SPierre Jolivet for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%" PetscInt_FMT " ", *((PetscInt *)addr) + i)); 3139566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help)); 314dd66f111SBlaise Bourdin } 3159566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBoolArray(NULL, bag->bagprefix, nname, (PetscBool *)addr, &tmp, NULL)); 316dd66f111SBlaise Bourdin 3179566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 318dd66f111SBlaise Bourdin item->dtype = PETSC_BOOL; 3196497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 3205f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 32102c9f0b5SLisandro Dalcin item->next = NULL; 322dd66f111SBlaise Bourdin item->msize = msize; 3239566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 3243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 325dd66f111SBlaise Bourdin } 326dd66f111SBlaise Bourdin 3275c6c1daeSBarry Smith /*@C 328811af0c4SBarry Smith PetscBagRegisterString - add a string value to a `PetscBag` 3295c6c1daeSBarry Smith 330c3339decSBarry Smith Logically Collective 3315c6c1daeSBarry Smith 332d8d19677SJose E. Roman Input Parameters: 3335c6c1daeSBarry Smith + bag - the bag of values 334811af0c4SBarry Smith . addr - location of start of string in struct, for example `¶ms->mystring` 3355c6c1daeSBarry Smith . msize - length of the string space in the struct 3365c6c1daeSBarry Smith . mdefault - the initial value 3375c6c1daeSBarry Smith . name - name of the string 3385c6c1daeSBarry Smith - help - longer string with more information about the value 3395c6c1daeSBarry Smith 3405c6c1daeSBarry Smith Level: beginner 3415c6c1daeSBarry Smith 34209cbc92aSBarry Smith Note: 34309cbc92aSBarry Smith The struct must have the field char mystring[`msize`]; not char *mystring 3445c6c1daeSBarry Smith 345db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 346db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 347c2e3fba1SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 3485c6c1daeSBarry Smith @*/ 349d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterString(PetscBag bag, void *addr, PetscInt msize, const char *mdefault, const char *name, const char *help) 350d71ae5a4SJacob Faibussowitsch { 3515c6c1daeSBarry Smith PetscBagItem item; 3525c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 3535c6c1daeSBarry Smith PetscBool printhelp; 3545c6c1daeSBarry Smith 3555c6c1daeSBarry Smith PetscFunctionBegin; 3564f572ea9SToby Isaac PetscAssertPointer(bag, 1); 3574f572ea9SToby Isaac PetscAssertPointer(addr, 2); 3584f572ea9SToby Isaac PetscAssertPointer(mdefault, 4); 3594f572ea9SToby Isaac PetscAssertPointer(name, 5); 3604f572ea9SToby Isaac PetscAssertPointer(help, 6); 3615c6c1daeSBarry Smith nname[0] = '-'; 3625c6c1daeSBarry Smith nname[1] = 0; 3639566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 3649566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 36548a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%s>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, mdefault, help)); 3665c6c1daeSBarry Smith 3679566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 3685c6c1daeSBarry Smith item->dtype = PETSC_CHAR; 3696497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 3705f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 37102c9f0b5SLisandro Dalcin item->next = NULL; 3725c6c1daeSBarry Smith item->msize = msize; 37348a46eb9SPierre Jolivet if (mdefault != (char *)addr) PetscCall(PetscStrncpy((char *)addr, mdefault, msize - 1)); 3749566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, bag->bagprefix, nname, (char *)addr, msize, NULL)); 3759566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 3763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3775c6c1daeSBarry Smith } 3785c6c1daeSBarry Smith 3795c6c1daeSBarry Smith /*@C 380811af0c4SBarry Smith PetscBagRegisterReal - add a `PetscReal` value to a `PetscBag` 3815c6c1daeSBarry Smith 382c3339decSBarry Smith Logically Collective 3835c6c1daeSBarry Smith 384d8d19677SJose E. Roman Input Parameters: 3855c6c1daeSBarry Smith + bag - the bag of values 38609cbc92aSBarry Smith . addr - location of `PetscReal` in struct, for example `¶ms->r` 3875c6c1daeSBarry Smith . mdefault - the initial value 3885c6c1daeSBarry Smith . name - name of the variable 3895c6c1daeSBarry Smith - help - longer string with more information about the value 3905c6c1daeSBarry Smith 3915c6c1daeSBarry Smith Level: beginner 3925c6c1daeSBarry Smith 393db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 394db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 395db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 3965c6c1daeSBarry Smith @*/ 397d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterReal(PetscBag bag, void *addr, PetscReal mdefault, const char *name, const char *help) 398d71ae5a4SJacob Faibussowitsch { 3995c6c1daeSBarry Smith PetscBagItem item; 4005c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 4015c6c1daeSBarry Smith PetscBool printhelp; 4025c6c1daeSBarry Smith 4035c6c1daeSBarry Smith PetscFunctionBegin; 4044f572ea9SToby Isaac PetscAssertPointer(bag, 1); 4054f572ea9SToby Isaac PetscAssertPointer(addr, 2); 4064f572ea9SToby Isaac PetscAssertPointer(name, 4); 4074f572ea9SToby Isaac PetscAssertPointer(help, 5); 4085c6c1daeSBarry Smith nname[0] = '-'; 4095c6c1daeSBarry Smith nname[1] = 0; 4109566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 4119566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 41248a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%g>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, (double)mdefault, help)); 4139566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(NULL, bag->bagprefix, nname, &mdefault, NULL)); 4145c6c1daeSBarry Smith 4159566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 4165c6c1daeSBarry Smith item->dtype = PETSC_REAL; 4176497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 4185f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 41902c9f0b5SLisandro Dalcin item->next = NULL; 4205c6c1daeSBarry Smith item->msize = 1; 4215c6c1daeSBarry Smith *(PetscReal *)addr = mdefault; 4229566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 4233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4245c6c1daeSBarry Smith } 4255c6c1daeSBarry Smith 4265c6c1daeSBarry Smith /*@C 427811af0c4SBarry Smith PetscBagRegisterScalar - add a `PetscScalar` value to a `PetscBag` 4285c6c1daeSBarry Smith 429c3339decSBarry Smith Logically Collective 4305c6c1daeSBarry Smith 431d8d19677SJose E. Roman Input Parameters: 4325c6c1daeSBarry Smith + bag - the bag of values 43309cbc92aSBarry Smith . addr - location of `PetscScalar` in struct, for example `¶ms->c` 4345c6c1daeSBarry Smith . mdefault - the initial value 4355c6c1daeSBarry Smith . name - name of the variable 4365c6c1daeSBarry Smith - help - longer string with more information about the value 4375c6c1daeSBarry Smith 4385c6c1daeSBarry Smith Level: beginner 4395c6c1daeSBarry Smith 440db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 44142747ad1SJacob Faibussowitsch `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagSetFromOptions()`, 44242747ad1SJacob Faibussowitsch `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 4435c6c1daeSBarry Smith @*/ 444d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterScalar(PetscBag bag, void *addr, PetscScalar mdefault, const char *name, const char *help) 445d71ae5a4SJacob Faibussowitsch { 4465c6c1daeSBarry Smith PetscBagItem item; 4475c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 4485c6c1daeSBarry Smith PetscBool printhelp; 4495c6c1daeSBarry Smith 4505c6c1daeSBarry Smith PetscFunctionBegin; 4514f572ea9SToby Isaac PetscAssertPointer(bag, 1); 4524f572ea9SToby Isaac PetscAssertPointer(addr, 2); 4534f572ea9SToby Isaac PetscAssertPointer(name, 4); 4544f572ea9SToby Isaac PetscAssertPointer(help, 5); 4555c6c1daeSBarry Smith nname[0] = '-'; 4565c6c1daeSBarry Smith nname[1] = 0; 4579566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 4589566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 45948a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%g + %gi>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, (double)PetscRealPart(mdefault), (double)PetscImaginaryPart(mdefault), help)); 4609566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, bag->bagprefix, nname, &mdefault, NULL)); 4615c6c1daeSBarry Smith 4629566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 4635c6c1daeSBarry Smith item->dtype = PETSC_SCALAR; 4646497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 4655f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 46602c9f0b5SLisandro Dalcin item->next = NULL; 4675c6c1daeSBarry Smith item->msize = 1; 4685c6c1daeSBarry Smith *(PetscScalar *)addr = mdefault; 4699566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 4703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4715c6c1daeSBarry Smith } 4725c6c1daeSBarry Smith 4735c6c1daeSBarry Smith /*@C 474811af0c4SBarry Smith PetscBagRegisterBool - add a `PetscBool` to a `PetscBag` 4755c6c1daeSBarry Smith 476c3339decSBarry Smith Logically Collective 4775c6c1daeSBarry Smith 478d8d19677SJose E. Roman Input Parameters: 4795c6c1daeSBarry Smith + bag - the bag of values 48009cbc92aSBarry Smith . addr - location of `PetscBool` in struct, for example `¶ms->b` 481811af0c4SBarry Smith . mdefault - the initial value, either `PETSC_FALSE` or `PETSC_TRUE` 4825c6c1daeSBarry Smith . name - name of the variable 4835c6c1daeSBarry Smith - help - longer string with more information about the value 4845c6c1daeSBarry Smith 4855c6c1daeSBarry Smith Level: beginner 4865c6c1daeSBarry Smith 487db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 48842747ad1SJacob Faibussowitsch `PetscBagRegisterInt()`, `PetscBagRegisterScalar()` 489db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 4905c6c1daeSBarry Smith @*/ 491d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterBool(PetscBag bag, void *addr, PetscBool mdefault, const char *name, const char *help) 492d71ae5a4SJacob Faibussowitsch { 4935c6c1daeSBarry Smith PetscBagItem item; 4945c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 4955c6c1daeSBarry Smith PetscBool printhelp; 4965c6c1daeSBarry Smith 4975c6c1daeSBarry Smith PetscFunctionBegin; 4984f572ea9SToby Isaac PetscAssertPointer(bag, 1); 4994f572ea9SToby Isaac PetscAssertPointer(addr, 2); 5004f572ea9SToby Isaac PetscAssertPointer(name, 4); 5014f572ea9SToby Isaac PetscAssertPointer(help, 5); 5025c6c1daeSBarry Smith /* the checks here with != PETSC_FALSE and PETSC_TRUE is a special case; here we truly demand that the value be 0 or 1 */ 5035f80ce2aSJacob Faibussowitsch PetscCheck(mdefault == PETSC_FALSE || mdefault == PETSC_TRUE, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Boolean %s %s must be boolean; integer value %d", name, help, (int)mdefault); 5045c6c1daeSBarry Smith nname[0] = '-'; 5055c6c1daeSBarry Smith nname[1] = 0; 5069566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 5079566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 50848a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%s>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, PetscBools[mdefault], help)); 5099566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, bag->bagprefix, nname, &mdefault, NULL)); 5105c6c1daeSBarry Smith 5119566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 5125c6c1daeSBarry Smith item->dtype = PETSC_BOOL; 5136497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 5145f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 51502c9f0b5SLisandro Dalcin item->next = NULL; 5165c6c1daeSBarry Smith item->msize = 1; 5175c6c1daeSBarry Smith *(PetscBool *)addr = mdefault; 5189566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 5193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5205c6c1daeSBarry Smith } 5215c6c1daeSBarry Smith 5220764c050SBarry Smith /*@ 523811af0c4SBarry Smith PetscBagDestroy - Destroys a `PetscBag` 5245c6c1daeSBarry Smith 525c3339decSBarry Smith Collective 5265c6c1daeSBarry Smith 5275c6c1daeSBarry Smith Input Parameter: 5285c6c1daeSBarry Smith . bag - the bag of values 5295c6c1daeSBarry Smith 5305c6c1daeSBarry Smith Level: beginner 5315c6c1daeSBarry Smith 532db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 533db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 534db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 5355c6c1daeSBarry Smith @*/ 536d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagDestroy(PetscBag *bag) 537d71ae5a4SJacob Faibussowitsch { 5385f80ce2aSJacob Faibussowitsch PetscBagItem nitem; 5395c6c1daeSBarry Smith 5405c6c1daeSBarry Smith PetscFunctionBegin; 5413ba16761SJacob Faibussowitsch if (!*bag) PetscFunctionReturn(PETSC_SUCCESS); 5424f572ea9SToby Isaac PetscAssertPointer(*bag, 1); 5435f80ce2aSJacob Faibussowitsch nitem = (*bag)->bagitems; 5445c6c1daeSBarry Smith while (nitem) { 5455f80ce2aSJacob Faibussowitsch PetscBagItem item = nitem->next; 5465f80ce2aSJacob Faibussowitsch 5479566063dSJacob Faibussowitsch if (nitem->list) PetscCall(PetscStrArrayDestroy(&nitem->list)); 5489566063dSJacob Faibussowitsch PetscCall(PetscFree(nitem)); 5495c6c1daeSBarry Smith nitem = item; 5505c6c1daeSBarry Smith } 5519566063dSJacob Faibussowitsch if ((*bag)->bagprefix) PetscCall(PetscFree((*bag)->bagprefix)); 5529566063dSJacob Faibussowitsch PetscCall(PetscFree(*bag)); 5533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5545c6c1daeSBarry Smith } 5555c6c1daeSBarry Smith 5565c6c1daeSBarry Smith /*@ 557811af0c4SBarry Smith PetscBagSetFromOptions - Allows setting entries to a `PetscBag` using the options database 5585c6c1daeSBarry Smith 559c3339decSBarry Smith Collective 5605c6c1daeSBarry Smith 5615c6c1daeSBarry Smith Input Parameter: 5625c6c1daeSBarry Smith . bag - the bag of values 5635c6c1daeSBarry Smith 5645c6c1daeSBarry Smith Level: beginner 5655c6c1daeSBarry Smith 566811af0c4SBarry Smith Note: 567811af0c4SBarry Smith The options database keys for the entries are of the form `-[bagprefix]_name value` 568811af0c4SBarry Smith 569db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagLoad()`, `PetscBagGetData()` 570db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 57142747ad1SJacob Faibussowitsch `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagRegisterEnum()` 5725c6c1daeSBarry Smith @*/ 573d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagSetFromOptions(PetscBag bag) 574d71ae5a4SJacob Faibussowitsch { 5755c6c1daeSBarry Smith PetscBagItem nitem = bag->bagitems; 5765c6c1daeSBarry Smith char name[PETSC_BAG_NAME_LENGTH + 1], helpname[PETSC_BAG_NAME_LENGTH + PETSC_BAG_HELP_LENGTH + 3]; 5775c6c1daeSBarry Smith PetscInt n; 5785c6c1daeSBarry Smith 5795c6c1daeSBarry Smith PetscFunctionBegin; 5804f572ea9SToby Isaac PetscAssertPointer(bag, 1); 5819566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(helpname, bag->bagname, sizeof(helpname))); 5829566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(helpname, " ", sizeof(helpname))); 5839566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(helpname, bag->baghelp, sizeof(helpname))); 584d0609cedSBarry Smith PetscOptionsBegin(bag->bagcomm, bag->bagprefix, helpname, NULL); 5855c6c1daeSBarry Smith while (nitem) { 5865c6c1daeSBarry Smith name[0] = '-'; 5875c6c1daeSBarry Smith name[1] = 0; 5889566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(name, nitem->name, sizeof(name))); 5895c6c1daeSBarry Smith if (nitem->dtype == PETSC_CHAR) { /* special handling for fortran required? [due to space padding vs null termination] */ 590*835f2295SStefano Zampini char *value = ((char *)bag) + nitem->offset; 5919566063dSJacob Faibussowitsch PetscCall(PetscOptionsString(name, nitem->help, "", value, value, nitem->msize, NULL)); 5925c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_REAL) { 5935c6c1daeSBarry Smith PetscReal *value = (PetscReal *)(((char *)bag) + nitem->offset); 5945c6c1daeSBarry Smith if (nitem->msize == 1) { 5959566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal(name, nitem->help, "", *value, value, NULL)); 5965c6c1daeSBarry Smith } else { 5975c6c1daeSBarry Smith n = nitem->msize; 5989566063dSJacob Faibussowitsch PetscCall(PetscOptionsRealArray(name, nitem->help, "", value, &n, NULL)); 5995c6c1daeSBarry Smith } 6005c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_SCALAR) { 6015c6c1daeSBarry Smith PetscScalar *value = (PetscScalar *)(((char *)bag) + nitem->offset); 6029566063dSJacob Faibussowitsch PetscCall(PetscOptionsScalar(name, nitem->help, "", *value, value, NULL)); 6035c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_INT) { 6045c6c1daeSBarry Smith PetscInt *value = (PetscInt *)(((char *)bag) + nitem->offset); 6055c6c1daeSBarry Smith if (nitem->msize == 1) { 6069566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt(name, nitem->help, "", *value, value, NULL)); 6075c6c1daeSBarry Smith } else { 6085c6c1daeSBarry Smith n = nitem->msize; 6099566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray(name, nitem->help, "", value, &n, NULL)); 6105c6c1daeSBarry Smith } 6115c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_ENUM) { 6125c6c1daeSBarry Smith PetscEnum *value = (PetscEnum *)(((char *)bag) + nitem->offset); 6135c6c1daeSBarry Smith PetscInt i = 0; 614fbccb6d4SPierre Jolivet while (nitem->list[i++]); 6159566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum(name, nitem->help, nitem->list[i - 3], (const char *const *)nitem->list, *value, value, NULL)); 6165c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_BOOL) { 6175c6c1daeSBarry Smith PetscBool *value = (PetscBool *)(((char *)bag) + nitem->offset); 618dd66f111SBlaise Bourdin if (nitem->msize == 1) { 6199566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool(name, nitem->help, "", *value, value, NULL)); 620dd66f111SBlaise Bourdin } else { 621dd66f111SBlaise Bourdin n = nitem->msize; 6229566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoolArray(name, nitem->help, "", value, &n, NULL)); 623dd66f111SBlaise Bourdin } 6245c6c1daeSBarry Smith } 6255c6c1daeSBarry Smith nitem = nitem->next; 6265c6c1daeSBarry Smith } 627d0609cedSBarry Smith PetscOptionsEnd(); 6283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6295c6c1daeSBarry Smith } 6305c6c1daeSBarry Smith 631ffeef943SBarry Smith /*@ 6325c6c1daeSBarry Smith PetscBagView - Views a bag of values as either ASCII text or a binary file 6335c6c1daeSBarry Smith 634c3339decSBarry Smith Collective 6355c6c1daeSBarry Smith 636d8d19677SJose E. Roman Input Parameters: 6375c6c1daeSBarry Smith + bag - the bag of values 638aec76313SJacob Faibussowitsch - view - location to view the values 6395c6c1daeSBarry Smith 6405c6c1daeSBarry Smith Level: beginner 6415c6c1daeSBarry Smith 642811af0c4SBarry Smith Note: 643811af0c4SBarry Smith Currently PETSc bags saved in a binary file can only be read back 64409cbc92aSBarry Smith in on a machine with the same binary format. 6455c6c1daeSBarry Smith 646db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagLoad()`, `PetscBagGetData()` 647db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`, `PetscBagRegisterEnum()` 648db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()` 6495c6c1daeSBarry Smith @*/ 650d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagView(PetscBag bag, PetscViewer view) 651d71ae5a4SJacob Faibussowitsch { 6525c6c1daeSBarry Smith PetscBool isascii, isbinary; 6535c6c1daeSBarry Smith PetscBagItem nitem = bag->bagitems; 6545c6c1daeSBarry Smith 6555c6c1daeSBarry Smith PetscFunctionBegin; 6564f572ea9SToby Isaac PetscAssertPointer(bag, 1); 6575f80ce2aSJacob Faibussowitsch PetscValidHeaderSpecific(view, PETSC_VIEWER_CLASSID, 2); 6589566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERASCII, &isascii)); 6599566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERBINARY, &isbinary)); 6605c6c1daeSBarry Smith if (isascii) { 6613ffde785SBarry Smith if (bag->bagprefix) { 6629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "PetscBag Object: %s (%s) %s\n", bag->bagname, bag->bagprefix, bag->baghelp)); 6633ffde785SBarry Smith } else { 6649566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "PetscBag Object: %s %s\n", bag->bagname, bag->baghelp)); 6653ffde785SBarry Smith } 6665c6c1daeSBarry Smith while (nitem) { 6675c6c1daeSBarry Smith if (nitem->dtype == PETSC_CHAR) { 668*835f2295SStefano Zampini char *value = ((char *)bag) + nitem->offset; 669da81f932SPierre Jolivet char tmp = value[nitem->msize - 1]; /* special handling for fortran chars without null terminator */ 6705c6c1daeSBarry Smith value[nitem->msize - 1] = 0; 6719566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %s; %s\n", nitem->name, value, nitem->help)); 6725c6c1daeSBarry Smith value[nitem->msize - 1] = tmp; 6735c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_REAL) { 6745c6c1daeSBarry Smith PetscReal *value = (PetscReal *)(((char *)bag) + nitem->offset); 6755c6c1daeSBarry Smith PetscInt i; 6769566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = ", nitem->name)); 67748a46eb9SPierre Jolivet for (i = 0; i < nitem->msize; i++) PetscCall(PetscViewerASCIIPrintf(view, "%g ", (double)value[i])); 6789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help)); 6795c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_SCALAR) { 6805c6c1daeSBarry Smith PetscScalar value = *(PetscScalar *)(((char *)bag) + nitem->offset); 6815c6c1daeSBarry Smith #if defined(PETSC_USE_COMPLEX) 6828627564fSBarry Smith if ((double)PetscImaginaryPart(value)) { 6839566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %g + %gi; %s\n", nitem->name, (double)PetscRealPart(value), (double)PetscImaginaryPart(value), nitem->help)); 6848627564fSBarry Smith } else { 6859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %g; %s\n", nitem->name, (double)PetscRealPart(value), nitem->help)); 6868627564fSBarry Smith } 6875c6c1daeSBarry Smith #else 6889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %g; %s\n", nitem->name, (double)value, nitem->help)); 6895c6c1daeSBarry Smith #endif 6905c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_INT) { 6915c6c1daeSBarry Smith PetscInt i, *value = (PetscInt *)(((char *)bag) + nitem->offset); 6929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = ", nitem->name)); 69348a46eb9SPierre Jolivet for (i = 0; i < nitem->msize; i++) PetscCall(PetscViewerASCIIPrintf(view, "%" PetscInt_FMT " ", value[i])); 6949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help)); 6955c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_BOOL) { 696dd66f111SBlaise Bourdin PetscBool *value = (PetscBool *)(((char *)bag) + nitem->offset); 697dd66f111SBlaise Bourdin PetscInt i; 6985c6c1daeSBarry Smith /* some Fortran compilers use -1 as boolean */ 6999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = ", nitem->name)); 700dd66f111SBlaise Bourdin for (i = 0; i < nitem->msize; i++) { 701dd66f111SBlaise Bourdin if (((int)value[i]) == -1) value[i] = PETSC_TRUE; 7025c6c1daeSBarry Smith /* the checks here with != PETSC_FALSE and PETSC_TRUE is a special case; here we truly demand that the value be 0 or 1 */ 703f4f49eeaSPierre Jolivet PetscCheck(value[i] == PETSC_FALSE || value[i] == PETSC_TRUE, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Boolean value for %s %s is corrupt; integer value %" PetscInt_FMT, nitem->name, nitem->help, (PetscInt)value[i]); 7049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s", PetscBools[value[i]])); 705dd66f111SBlaise Bourdin } 7069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help)); 7075c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_ENUM) { 7085c6c1daeSBarry Smith PetscEnum value = *(PetscEnum *)(((char *)bag) + nitem->offset); 7095c6c1daeSBarry Smith PetscInt i = 0; 710fbccb6d4SPierre Jolivet while (nitem->list[i++]); 7119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %s; (%s) %s\n", nitem->name, nitem->list[value], nitem->list[i - 3], nitem->help)); 7125c6c1daeSBarry Smith } 7135c6c1daeSBarry Smith nitem = nitem->next; 7145c6c1daeSBarry Smith } 7155c6c1daeSBarry Smith } else if (isbinary) { 7165c6c1daeSBarry Smith PetscInt classid = PETSC_BAG_FILE_CLASSID, dtype; 7175c6c1daeSBarry Smith PetscInt deprecatedbagsize = 0; 718a261c58fSBarry Smith PetscViewerFormat format; 7199566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &classid, 1, PETSC_INT)); 7209566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &deprecatedbagsize, 1, PETSC_INT)); 7219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &bag->count, 1, PETSC_INT)); 7229566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, bag->bagname, PETSC_BAG_NAME_LENGTH, PETSC_CHAR)); 7239566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, bag->baghelp, PETSC_BAG_HELP_LENGTH, PETSC_CHAR)); 7245c6c1daeSBarry Smith while (nitem) { 7259566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &nitem->offset, 1, PETSC_INT)); 7265c6c1daeSBarry Smith dtype = (PetscInt)nitem->dtype; 7279566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &dtype, 1, PETSC_INT)); 7289566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, nitem->name, PETSC_BAG_NAME_LENGTH, PETSC_CHAR)); 7299566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, nitem->help, PETSC_BAG_HELP_LENGTH, PETSC_CHAR)); 7309566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &nitem->msize, 1, PETSC_INT)); 7315c6c1daeSBarry Smith /* some Fortran compilers use -1 as boolean */ 732f4f49eeaSPierre Jolivet if (dtype == PETSC_BOOL && (*(int *)(((char *)bag) + nitem->offset) == -1)) *(int *)(((char *)bag) + nitem->offset) = PETSC_TRUE; 7335c6c1daeSBarry Smith 73457508eceSPierre Jolivet PetscCall(PetscViewerBinaryWrite(view, (char *)bag + nitem->offset, nitem->msize, nitem->dtype)); 73548a46eb9SPierre Jolivet if (dtype == PETSC_ENUM) PetscCall(PetscViewerBinaryWriteStringArray(view, (const char *const *)nitem->list)); 7365c6c1daeSBarry Smith nitem = nitem->next; 7375c6c1daeSBarry Smith } 7389566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(view, &format)); 739a261c58fSBarry Smith if (format == PETSC_VIEWER_BINARY_MATLAB) { 740a261c58fSBarry Smith MPI_Comm comm; 741a261c58fSBarry Smith FILE *info; 7429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)view, &comm)); 7439566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetInfoPointer(view, &info)); 7449566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(comm, info, "#--- begin code written by PetscViewerBinary for MATLAB format ---#\n")); 7459566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(comm, info, "#$$ Set.%s = PetscBinaryRead(fd);\n", bag->bagname)); 7469566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(comm, info, "#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n")); 747a261c58fSBarry Smith } 748a261c58fSBarry Smith } 7493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7505c6c1daeSBarry Smith } 7515c6c1daeSBarry Smith 752ffeef943SBarry Smith /*@ 75309cbc92aSBarry Smith PetscBagViewFromOptions - Processes command line options to determine if/how a `PetscBag` is to be viewed. 754173f9484SMatthew G. Knepley 755c3339decSBarry Smith Collective 756173f9484SMatthew G. Knepley 757173f9484SMatthew G. Knepley Input Parameters: 758aec76313SJacob Faibussowitsch + bag - the object 75909cbc92aSBarry Smith . bobj - optional other object that provides prefix (if `NULL` then the prefix in obj is used) 760173f9484SMatthew G. Knepley - optionname - option to activate viewing 761478db826SMatthew G. Knepley 762173f9484SMatthew G. Knepley Level: intermediate 763478db826SMatthew G. Knepley 764db781477SPatrick Sanan .seealso: `PetscBagCreate()`, `PetscBag`, `PetscViewer` 765173f9484SMatthew G. Knepley @*/ 766d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagViewFromOptions(PetscBag bag, PetscObject bobj, const char optionname[]) 767d71ae5a4SJacob Faibussowitsch { 768173f9484SMatthew G. Knepley static PetscBool incall = PETSC_FALSE; 769173f9484SMatthew G. Knepley PetscViewer viewer; 770173f9484SMatthew G. Knepley PetscViewerFormat format; 771173f9484SMatthew G. Knepley const char *prefix, *bprefix = NULL; 772173f9484SMatthew G. Knepley PetscBool flg; 773173f9484SMatthew G. Knepley 774173f9484SMatthew G. Knepley PetscFunctionBegin; 7753ba16761SJacob Faibussowitsch if (incall) PetscFunctionReturn(PETSC_SUCCESS); 776173f9484SMatthew G. Knepley incall = PETSC_TRUE; 7774f572ea9SToby Isaac PetscAssertPointer(bag, 1); 7789566063dSJacob Faibussowitsch if (bobj) PetscCall(PetscObjectGetOptionsPrefix(bobj, &bprefix)); 779173f9484SMatthew G. Knepley prefix = bobj ? bprefix : bag->bagprefix; 780648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(bag->bagcomm, NULL, prefix, optionname, &viewer, &format, &flg)); 781173f9484SMatthew G. Knepley if (flg) { 7829566063dSJacob Faibussowitsch PetscCall(PetscViewerPushFormat(viewer, format)); 7839566063dSJacob Faibussowitsch PetscCall(PetscBagView(bag, viewer)); 7849566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7859566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 786648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 787173f9484SMatthew G. Knepley } 788173f9484SMatthew G. Knepley incall = PETSC_FALSE; 7893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 790173f9484SMatthew G. Knepley } 791173f9484SMatthew G. Knepley 792ffeef943SBarry Smith /*@ 7935c6c1daeSBarry Smith PetscBagLoad - Loads a bag of values from a binary file 7945c6c1daeSBarry Smith 795c3339decSBarry Smith Collective 7965c6c1daeSBarry Smith 797d8d19677SJose E. Roman Input Parameters: 798aec76313SJacob Faibussowitsch + view - file to load values from 7995c6c1daeSBarry Smith - bag - the bag of values 8005c6c1daeSBarry Smith 8015c6c1daeSBarry Smith Level: beginner 8025c6c1daeSBarry Smith 80309cbc92aSBarry Smith Note: 80409cbc92aSBarry Smith You must have created and registered all the fields in the bag before loading into it. This only loads values. 80509cbc92aSBarry Smith 806db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagView()`, `PetscBagGetData()` 807db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 808db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 8095c6c1daeSBarry Smith @*/ 810d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagLoad(PetscViewer view, PetscBag bag) 811d71ae5a4SJacob Faibussowitsch { 8125c6c1daeSBarry Smith PetscBool isbinary; 8135f80ce2aSJacob Faibussowitsch PetscInt classid, bagcount, dtype, msize, offset, deprecatedbagsize; 8145c6c1daeSBarry Smith char name[PETSC_BAG_NAME_LENGTH], help[PETSC_BAG_HELP_LENGTH], **list; 8155c6c1daeSBarry Smith PetscBagItem nitem; 8165c6c1daeSBarry Smith MPI_Comm comm; 8175c6c1daeSBarry Smith PetscMPIInt flag; 8185c6c1daeSBarry Smith 8195c6c1daeSBarry Smith PetscFunctionBegin; 8205f80ce2aSJacob Faibussowitsch PetscValidHeaderSpecific(view, PETSC_VIEWER_CLASSID, 1); 8214f572ea9SToby Isaac PetscAssertPointer(bag, 2); 8229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)view, &comm)); 8239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(comm, bag->bagcomm, &flag)); 8245f80ce2aSJacob Faibussowitsch PetscCheck(flag == MPI_CONGRUENT || flag == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "Different communicators in the viewer and bag"); 8259566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERBINARY, &isbinary)); 8265f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this viewer type"); 8275c6c1daeSBarry Smith 8289566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &classid, 1, NULL, PETSC_INT)); 8295f80ce2aSJacob Faibussowitsch PetscCheck(classid == PETSC_BAG_FILE_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not PetscBag next in binary file"); 8309566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &deprecatedbagsize, 1, NULL, PETSC_INT)); 8319566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &bagcount, 1, NULL, PETSC_INT)); 832*835f2295SStefano Zampini PetscCheck(bagcount == bag->count, comm, PETSC_ERR_ARG_INCOMP, "Bag in file has different number of entries %" PetscInt_FMT " then passed in bag %" PetscInt_FMT, bagcount, bag->count); 8339566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, bag->bagname, PETSC_BAG_NAME_LENGTH, NULL, PETSC_CHAR)); 8349566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, bag->baghelp, PETSC_BAG_HELP_LENGTH, NULL, PETSC_CHAR)); 8355c6c1daeSBarry Smith 8365c6c1daeSBarry Smith nitem = bag->bagitems; 8375f80ce2aSJacob Faibussowitsch for (PetscInt i = 0; i < bagcount; i++) { 8389566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &offset, 1, NULL, PETSC_INT)); 8395c6c1daeSBarry Smith /* ignore the offset in the file */ 8409566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &dtype, 1, NULL, PETSC_INT)); 8419566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, name, PETSC_BAG_NAME_LENGTH, NULL, PETSC_CHAR)); 8429566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, help, PETSC_BAG_HELP_LENGTH, NULL, PETSC_CHAR)); 8439566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &msize, 1, NULL, PETSC_INT)); 8445c6c1daeSBarry Smith 8455c6c1daeSBarry Smith if (dtype == (PetscInt)PETSC_CHAR) { 8469566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_CHAR)); 8475c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_REAL) { 8489566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_REAL)); 8495c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_SCALAR) { 8509566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, 1, NULL, PETSC_SCALAR)); 8515c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_INT) { 8529566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_INT)); 8535c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_BOOL) { 8549566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_BOOL)); 8555c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_ENUM) { 8569566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, 1, NULL, PETSC_ENUM)); 8579566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadStringArray(view, &list)); 8585c6c1daeSBarry Smith /* don't need to save list because it is already registered in the bag */ 8599566063dSJacob Faibussowitsch PetscCall(PetscFree(list)); 8605c6c1daeSBarry Smith } 8615c6c1daeSBarry Smith nitem = nitem->next; 8625c6c1daeSBarry Smith } 8633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8645c6c1daeSBarry Smith } 8655c6c1daeSBarry Smith 866e8976759SBarry Smith /*@C 86709cbc92aSBarry Smith PetscBagCreate - Create a bag of values. A `PetscBag` is a representation of a C struct that can be saved to and read from files, 86809cbc92aSBarry Smith can have values set from the options database 8695c6c1daeSBarry Smith 870d083f849SBarry Smith Collective 8715c6c1daeSBarry Smith 8725c6c1daeSBarry Smith Input Parameters: 8735c6c1daeSBarry Smith + comm - communicator to share bag 874811af0c4SBarry Smith - bagsize - size of the C structure holding the values, for example sizeof(mystruct) 8755c6c1daeSBarry Smith 8765c6c1daeSBarry Smith Output Parameter: 8775c6c1daeSBarry Smith . bag - the bag of values 8785c6c1daeSBarry Smith 879aec76313SJacob Faibussowitsch Level: intermediate 88009cbc92aSBarry Smith 8815c6c1daeSBarry Smith Notes: 882811af0c4SBarry Smith After creating the bag, for each entry in the C struct call the appropriate `PetscBagRegisterInt()` etc to define the C structs layout 883811af0c4SBarry Smith 884377f809aSBarry Smith The size of the struct must be small enough to fit in a `PetscInt`; by default 885811af0c4SBarry Smith `PetscInt` is 4 bytes; this means a bag cannot be larger than 2 gigabytes in length. 886377f809aSBarry Smith The warning about casting to a shorter length can be ignored below unless your struct is too large 8875c6c1daeSBarry Smith 888db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 889db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 89042747ad1SJacob Faibussowitsch `PetscBagSetFromOptions()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 8915c6c1daeSBarry Smith @*/ 892d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagCreate(MPI_Comm comm, size_t bagsize, PetscBag *bag) 893d71ae5a4SJacob Faibussowitsch { 8945f80ce2aSJacob Faibussowitsch const size_t totalsize = bagsize + sizeof(struct _n_PetscBag) + sizeof(PetscScalar); 8955c6c1daeSBarry Smith 8965c6c1daeSBarry Smith PetscFunctionBegin; 8974f572ea9SToby Isaac PetscAssertPointer(bag, 3); 898377f809aSBarry Smith 8999566063dSJacob Faibussowitsch PetscCall(PetscInfo(NULL, "Creating Bag with total size %d\n", (int)totalsize)); 9009566063dSJacob Faibussowitsch PetscCall(PetscCalloc(totalsize, bag)); 9016497c311SBarry Smith PetscCall(PetscIntCast(totalsize, &(*bag)->bagsize)); 9025c6c1daeSBarry Smith (*bag)->bagcomm = comm; 9030298fd71SBarry Smith (*bag)->bagprefix = NULL; 9045c6c1daeSBarry Smith (*bag)->structlocation = (void *)(((char *)(*bag)) + sizeof(PetscScalar) * (sizeof(struct _n_PetscBag) / sizeof(PetscScalar)) + sizeof(PetscScalar)); 9053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9065c6c1daeSBarry Smith } 9075c6c1daeSBarry Smith 908cc4c1da9SBarry Smith /*@ 9095c6c1daeSBarry Smith PetscBagSetName - Sets the name of a bag of values 9105c6c1daeSBarry Smith 9115c6c1daeSBarry Smith Not Collective 9125c6c1daeSBarry Smith 913aec76313SJacob Faibussowitsch Level: intermediate 9145c6c1daeSBarry Smith 9155c6c1daeSBarry Smith Input Parameters: 9165c6c1daeSBarry Smith + bag - the bag of values 9175c6c1daeSBarry Smith . name - the name assigned to the bag 9185c6c1daeSBarry Smith - help - help message for bag 9195c6c1daeSBarry Smith 920db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 921db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 922db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 9235c6c1daeSBarry Smith @*/ 924d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagSetName(PetscBag bag, const char *name, const char *help) 925d71ae5a4SJacob Faibussowitsch { 9265c6c1daeSBarry Smith PetscFunctionBegin; 9274f572ea9SToby Isaac PetscAssertPointer(bag, 1); 9284f572ea9SToby Isaac PetscAssertPointer(name, 2); 9294f572ea9SToby Isaac PetscAssertPointer(help, 3); 9309566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(bag->bagname, name, PETSC_BAG_NAME_LENGTH - 1)); 9319566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(bag->baghelp, help, PETSC_BAG_HELP_LENGTH - 1)); 9323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9335c6c1daeSBarry Smith } 9345c6c1daeSBarry Smith 9355c6c1daeSBarry Smith /*@C 9365c6c1daeSBarry Smith PetscBagGetName - Gets the name of a bag of values 9375c6c1daeSBarry Smith 9385c6c1daeSBarry Smith Not Collective 9395c6c1daeSBarry Smith 940aec76313SJacob Faibussowitsch Level: intermediate 9415c6c1daeSBarry Smith 9425c6c1daeSBarry Smith Input Parameter: 9435c6c1daeSBarry Smith . bag - the bag of values 9445c6c1daeSBarry Smith 9455c6c1daeSBarry Smith Output Parameter: 9465c6c1daeSBarry Smith . name - the name assigned to the bag 9475c6c1daeSBarry Smith 948db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 949db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 950db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 9515c6c1daeSBarry Smith @*/ 952cc4c1da9SBarry Smith PetscErrorCode PetscBagGetName(PetscBag bag, const char **name) 953d71ae5a4SJacob Faibussowitsch { 9545c6c1daeSBarry Smith PetscFunctionBegin; 9554f572ea9SToby Isaac PetscAssertPointer(bag, 1); 9564f572ea9SToby Isaac PetscAssertPointer(name, 2); 9575c6c1daeSBarry Smith *name = bag->bagname; 9583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9595c6c1daeSBarry Smith } 9605c6c1daeSBarry Smith 9615c6c1daeSBarry Smith /*@C 9625c6c1daeSBarry Smith PetscBagGetData - Gives back the user - access to memory that 963811af0c4SBarry Smith can be used for storing user-data-structure 9645c6c1daeSBarry Smith 9655c6c1daeSBarry Smith Not Collective 9665c6c1daeSBarry Smith 9675c6c1daeSBarry Smith Input Parameter: 9685c6c1daeSBarry Smith . bag - the bag of values 9695c6c1daeSBarry Smith 9705c6c1daeSBarry Smith Output Parameter: 97109cbc92aSBarry Smith . data - pointer to memory that will have user-data-structure, this can be cast to a pointer of the type the C struct used in 97209cbc92aSBarry Smith defining the bag 97309cbc92aSBarry Smith 974aec76313SJacob Faibussowitsch Level: intermediate 9755c6c1daeSBarry Smith 976db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()` 977db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 978db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 9795c6c1daeSBarry Smith @*/ 980d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagGetData(PetscBag bag, void **data) 981d71ae5a4SJacob Faibussowitsch { 9825c6c1daeSBarry Smith PetscFunctionBegin; 9834f572ea9SToby Isaac PetscAssertPointer(bag, 1); 9844f572ea9SToby Isaac PetscAssertPointer(data, 2); 9855c6c1daeSBarry Smith *data = bag->structlocation; 9863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9875c6c1daeSBarry Smith } 9885c6c1daeSBarry Smith 989cc4c1da9SBarry Smith /*@ 9905c6c1daeSBarry Smith PetscBagSetOptionsPrefix - Sets the prefix used for searching for all 991811af0c4SBarry Smith `PetscBag` items in the options database. 9925c6c1daeSBarry Smith 99309cbc92aSBarry Smith Logically Collective 9945c6c1daeSBarry Smith 995aec76313SJacob Faibussowitsch Level: intermediate 9965c6c1daeSBarry Smith 9975c6c1daeSBarry Smith Input Parameters: 9985c6c1daeSBarry Smith + bag - the bag of values 999aec76313SJacob Faibussowitsch - pre - the prefix to prepend all Bag item names with. 10005c6c1daeSBarry Smith 100109cbc92aSBarry Smith Note: 100209cbc92aSBarry Smith Must be called prior to registering any of the bag items. 10035c6c1daeSBarry Smith 1004db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 1005db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 10065c6c1daeSBarry Smith @*/ 1007d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagSetOptionsPrefix(PetscBag bag, const char pre[]) 1008d71ae5a4SJacob Faibussowitsch { 10095c6c1daeSBarry Smith PetscFunctionBegin; 10104f572ea9SToby Isaac PetscAssertPointer(bag, 1); 10115f80ce2aSJacob Faibussowitsch if (pre) { 10124f572ea9SToby Isaac PetscAssertPointer(pre, 2); 10135f80ce2aSJacob Faibussowitsch PetscCheck(pre[0] != '-', PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Options prefix should not begin with a hyphen"); 10149566063dSJacob Faibussowitsch PetscCall(PetscFree(bag->bagprefix)); 1015f4f49eeaSPierre Jolivet PetscCall(PetscStrallocpy(pre, &bag->bagprefix)); 10169566063dSJacob Faibussowitsch } else PetscCall(PetscFree(bag->bagprefix)); 10173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10185c6c1daeSBarry Smith } 1019ffb7e86cSMatthew G. Knepley 1020ffb7e86cSMatthew G. Knepley /*@C 1021ffb7e86cSMatthew G. Knepley PetscBagGetNames - Get the names of all entries in the bag 1022ffb7e86cSMatthew G. Knepley 102309cbc92aSBarry Smith Not Collective 1024ffb7e86cSMatthew G. Knepley 10252fe279fdSBarry Smith Input Parameter: 10262fe279fdSBarry Smith . bag - the bag of values 1027ffb7e86cSMatthew G. Knepley 1028ffb7e86cSMatthew G. Knepley Output Parameter: 1029ffb7e86cSMatthew G. Knepley . names - array of char pointers for names 1030ffb7e86cSMatthew G. Knepley 1031ffb7e86cSMatthew G. Knepley Level: intermediate 1032ffb7e86cSMatthew G. Knepley 1033db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagSetName()`, `PetscBagCreate()`, `PetscBagGetData()` 1034db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`, `PetscBagRegisterEnum()` 1035ffb7e86cSMatthew G. Knepley @*/ 1036d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagGetNames(PetscBag bag, const char *names[]) 1037d71ae5a4SJacob Faibussowitsch { 1038ffb7e86cSMatthew G. Knepley PetscBagItem nitem = bag->bagitems; 1039ffb7e86cSMatthew G. Knepley 1040ffb7e86cSMatthew G. Knepley PetscFunctionBegin; 10414f572ea9SToby Isaac PetscAssertPointer(bag, 1); 10424f572ea9SToby Isaac PetscAssertPointer(names, 2); 10435f80ce2aSJacob Faibussowitsch for (PetscInt n = 0; nitem; ++n, nitem = nitem->next) names[n] = nitem->name; 10443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1045ffb7e86cSMatthew G. Knepley } 1046