15f80ce2aSJacob Faibussowitsch #include <petsc/private/petscimpl.h> 2af0996ceSBarry Smith #include <petsc/private/bagimpl.h> /*I "petscbag.h" I*/ 3665c2dedSJed Brown #include <petscviewer.h> 45c6c1daeSBarry Smith 55c6c1daeSBarry Smith /* 65c6c1daeSBarry Smith Adds item to the linked list in a bag 75c6c1daeSBarry Smith */ 8d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscBagRegister_Private(PetscBag bag, PetscBagItem item, const char *name, const char *help) 9d71ae5a4SJacob Faibussowitsch { 105c6c1daeSBarry Smith PetscFunctionBegin; 119566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(item->name, name, PETSC_BAG_NAME_LENGTH - 1)); 129566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(item->help, help, PETSC_BAG_HELP_LENGTH - 1)); 135f80ce2aSJacob Faibussowitsch if (bag->bagitems) { 145c6c1daeSBarry Smith PetscBagItem nitem = bag->bagitems; 155f80ce2aSJacob Faibussowitsch 165f80ce2aSJacob Faibussowitsch while (nitem->next) nitem = nitem->next; 175c6c1daeSBarry Smith nitem->next = item; 185f80ce2aSJacob Faibussowitsch } else bag->bagitems = item; 195c6c1daeSBarry Smith bag->count++; 203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215c6c1daeSBarry Smith } 225c6c1daeSBarry Smith 235c6c1daeSBarry Smith /*@C 24811af0c4SBarry Smith PetscBagRegisterEnum - add an enum value to a `PetscBag` 255c6c1daeSBarry Smith 26c3339decSBarry Smith Logically Collective 275c6c1daeSBarry Smith 28d8d19677SJose E. Roman Input Parameters: 295c6c1daeSBarry Smith + bag - the bag of values 30811af0c4SBarry Smith . addr - location of enum in struct, for example `¶ms->dt` 315c6c1daeSBarry Smith . list - array of strings containing names of enum values followed by enum name followed by enum prefix 32811af0c4SBarry Smith . mdefault - the initial value, cast with (`PetscEnum`) 332fe279fdSBarry Smith . name - the name of the item 345c6c1daeSBarry Smith - help - longer string with more information about the value 355c6c1daeSBarry Smith 365c6c1daeSBarry Smith Level: beginner 375c6c1daeSBarry Smith 38db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 39db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 40db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()` 415c6c1daeSBarry Smith @*/ 42d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterEnum(PetscBag bag, void *addr, const char *const *list, PetscEnum mdefault, const char *name, const char *help) 43d71ae5a4SJacob Faibussowitsch { 445c6c1daeSBarry Smith PetscBagItem item; 455c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 465c6c1daeSBarry Smith PetscBool printhelp; 475c6c1daeSBarry Smith PetscInt i = 0; 485c6c1daeSBarry Smith 495c6c1daeSBarry Smith PetscFunctionBegin; 504f572ea9SToby Isaac PetscAssertPointer(bag, 1); 514f572ea9SToby Isaac PetscAssertPointer(addr, 2); 524f572ea9SToby Isaac PetscAssertPointer(list, 3); 534f572ea9SToby Isaac PetscAssertPointer(name, 5); 544f572ea9SToby Isaac PetscAssertPointer(help, 6); 555c6c1daeSBarry Smith nname[0] = '-'; 565c6c1daeSBarry Smith nname[1] = 0; 579566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 589566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 595c6c1daeSBarry Smith if (printhelp) { 60fbccb6d4SPierre Jolivet while (list[i++]); 619566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%s>: (%s) %s (choose one of) ", bag->bagprefix ? bag->bagprefix : "", name, list[mdefault], list[i - 3], help)); 629566063dSJacob Faibussowitsch for (i = 0; list[i + 2]; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " %s", list[i])); 639566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, "\n")); 645c6c1daeSBarry Smith } 659566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetEnum(NULL, bag->bagprefix, nname, list, &mdefault, NULL)); 665c6c1daeSBarry Smith 679566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 685c6c1daeSBarry Smith item->dtype = PETSC_ENUM; 696497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 705f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 7102c9f0b5SLisandro Dalcin item->next = NULL; 725c6c1daeSBarry Smith item->msize = 1; 73835f2295SStefano Zampini PetscCall(PetscStrArrayallocpy(list, &item->list)); 745c6c1daeSBarry Smith *(PetscEnum *)addr = mdefault; 759566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 775c6c1daeSBarry Smith } 785c6c1daeSBarry Smith 795c6c1daeSBarry Smith /*@C 8009cbc92aSBarry Smith PetscBagRegisterIntArray - add a `PetscInt` array to a `PetscBag` 815c6c1daeSBarry Smith 82c3339decSBarry Smith Logically Collective 835c6c1daeSBarry Smith 84d8d19677SJose E. Roman Input Parameters: 855c6c1daeSBarry Smith + bag - the bag of values 86811af0c4SBarry Smith . addr - location of integer in struct, for example `¶ms->i` 875c6c1daeSBarry Smith . msize - number of entries in array 88811af0c4SBarry Smith . name - name of the array 895c6c1daeSBarry Smith - help - longer string with more information about the value 905c6c1daeSBarry Smith 915c6c1daeSBarry Smith Level: beginner 925c6c1daeSBarry Smith 93db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 94db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 95db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 965c6c1daeSBarry Smith @*/ 97d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterIntArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help) 98d71ae5a4SJacob Faibussowitsch { 995c6c1daeSBarry Smith PetscBagItem item; 1005c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 1015c6c1daeSBarry Smith PetscBool printhelp; 1025c6c1daeSBarry Smith PetscInt i, tmp = msize; 1035c6c1daeSBarry Smith 1045c6c1daeSBarry Smith PetscFunctionBegin; 1054f572ea9SToby Isaac PetscAssertPointer(bag, 1); 1064f572ea9SToby Isaac PetscAssertPointer(addr, 2); 1074f572ea9SToby Isaac PetscAssertPointer(name, 4); 1084f572ea9SToby Isaac PetscAssertPointer(help, 5); 1095c6c1daeSBarry Smith nname[0] = '-'; 1105c6c1daeSBarry Smith nname[1] = 0; 1119566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 1129566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 1135c6c1daeSBarry Smith if (printhelp) { 1149566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <", bag->bagprefix ? bag->bagprefix : "", name)); 11548a46eb9SPierre Jolivet for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%" PetscInt_FMT " ", *((PetscInt *)addr) + i)); 1169566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help)); 1175c6c1daeSBarry Smith } 1189566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(NULL, bag->bagprefix, nname, (PetscInt *)addr, &tmp, NULL)); 1195c6c1daeSBarry Smith 1209566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 1215c6c1daeSBarry Smith item->dtype = PETSC_INT; 1226497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 1235f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 12402c9f0b5SLisandro Dalcin item->next = NULL; 1255c6c1daeSBarry Smith item->msize = msize; 1269566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 1273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1285c6c1daeSBarry Smith } 1295c6c1daeSBarry Smith 1305c6c1daeSBarry Smith /*@C 13109cbc92aSBarry Smith PetscBagRegisterRealArray - add a `PetscReal` array to a `PetscBag` 1325c6c1daeSBarry Smith 133c3339decSBarry Smith Logically Collective 1345c6c1daeSBarry Smith 135d8d19677SJose E. Roman Input Parameters: 1365c6c1daeSBarry Smith + bag - the bag of values 137811af0c4SBarry Smith . addr - location of real array in struct, for example `¶ms->d` 138811af0c4SBarry Smith . msize - number of entries in the array 139811af0c4SBarry Smith . name - name of the array 1405c6c1daeSBarry Smith - help - longer string with more information about the value 1415c6c1daeSBarry Smith 1425c6c1daeSBarry Smith Level: beginner 1435c6c1daeSBarry Smith 144db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 145db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 146db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 1475c6c1daeSBarry Smith @*/ 148d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterRealArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help) 149d71ae5a4SJacob Faibussowitsch { 1505c6c1daeSBarry Smith PetscBagItem item; 1515c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 1525c6c1daeSBarry Smith PetscBool printhelp; 1535c6c1daeSBarry Smith PetscInt i, tmp = msize; 1545c6c1daeSBarry Smith 1555c6c1daeSBarry Smith PetscFunctionBegin; 1564f572ea9SToby Isaac PetscAssertPointer(bag, 1); 1574f572ea9SToby Isaac PetscAssertPointer(addr, 2); 1584f572ea9SToby Isaac PetscAssertPointer(name, 4); 1594f572ea9SToby Isaac PetscAssertPointer(help, 5); 1605c6c1daeSBarry Smith nname[0] = '-'; 1615c6c1daeSBarry Smith nname[1] = 0; 1629566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 1639566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 1645c6c1daeSBarry Smith if (printhelp) { 1659566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <", bag->bagprefix ? bag->bagprefix : "", name)); 1666497c311SBarry Smith for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%g ", (double)(*((PetscReal *)addr) + i))); 1679566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help)); 1685c6c1daeSBarry Smith } 1699566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetRealArray(NULL, bag->bagprefix, nname, (PetscReal *)addr, &tmp, NULL)); 1705c6c1daeSBarry Smith 1719566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 1725c6c1daeSBarry Smith item->dtype = PETSC_REAL; 1736497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 1745f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 17502c9f0b5SLisandro Dalcin item->next = NULL; 1765c6c1daeSBarry Smith item->msize = msize; 1779566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1795c6c1daeSBarry Smith } 1805c6c1daeSBarry Smith 1815c6c1daeSBarry Smith /*@C 18209cbc92aSBarry Smith PetscBagRegisterInt - add a `PetscInt` value to a `PetscBag` 1835c6c1daeSBarry Smith 184c3339decSBarry Smith Logically Collective 1855c6c1daeSBarry Smith 186d8d19677SJose E. Roman Input Parameters: 1875c6c1daeSBarry Smith + bag - the bag of values 188811af0c4SBarry Smith . addr - location of integer in struct, for example `¶ms->i` 1895c6c1daeSBarry Smith . mdefault - the initial value 1905c6c1daeSBarry Smith . name - name of the integer 1915c6c1daeSBarry Smith - help - longer string with more information about the value 1925c6c1daeSBarry Smith 1935c6c1daeSBarry Smith Level: beginner 1945c6c1daeSBarry Smith 195db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 196db781477SPatrick Sanan `PetscBagRegisterInt64()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 197db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 1985c6c1daeSBarry Smith @*/ 199d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterInt(PetscBag bag, void *addr, PetscInt mdefault, const char *name, const char *help) 200d71ae5a4SJacob Faibussowitsch { 2015c6c1daeSBarry Smith PetscBagItem item; 2025c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 2035c6c1daeSBarry Smith PetscBool printhelp; 2045c6c1daeSBarry Smith 2055c6c1daeSBarry Smith PetscFunctionBegin; 2064f572ea9SToby Isaac PetscAssertPointer(bag, 1); 2074f572ea9SToby Isaac PetscAssertPointer(addr, 2); 2084f572ea9SToby Isaac PetscAssertPointer(name, 4); 2094f572ea9SToby Isaac PetscAssertPointer(help, 5); 2105c6c1daeSBarry Smith nname[0] = '-'; 2115c6c1daeSBarry Smith nname[1] = 0; 2129566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 2139566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 21448a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%" PetscInt_FMT ">: %s \n", bag->bagprefix ? bag->bagprefix : "", name, mdefault, help)); 2159566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, bag->bagprefix, nname, &mdefault, NULL)); 2165c6c1daeSBarry Smith 2179566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 2185c6c1daeSBarry Smith item->dtype = PETSC_INT; 2196497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 2205f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 22102c9f0b5SLisandro Dalcin item->next = NULL; 2225c6c1daeSBarry Smith item->msize = 1; 2235c6c1daeSBarry Smith *(PetscInt *)addr = mdefault; 2249566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 2253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2265c6c1daeSBarry Smith } 2275c6c1daeSBarry Smith 2280d349d43SBarry Smith /*@C 229811af0c4SBarry Smith PetscBagRegisterInt64 - add a `PetscInt64` value to a `PetscBag` 2300d349d43SBarry Smith 231c3339decSBarry Smith Logically Collective 2320d349d43SBarry Smith 233d8d19677SJose E. Roman Input Parameters: 2340d349d43SBarry Smith + bag - the bag of values 235811af0c4SBarry Smith . addr - location of integer in struct, for example `¶ms->i` 2360d349d43SBarry Smith . mdefault - the initial value 2370d349d43SBarry Smith . name - name of the integer 2380d349d43SBarry Smith - help - longer string with more information about the value 2390d349d43SBarry Smith 2400d349d43SBarry Smith Level: beginner 2410d349d43SBarry Smith 242db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 243db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 244db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 2450d349d43SBarry Smith @*/ 246d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterInt64(PetscBag bag, void *addr, PetscInt64 mdefault, const char *name, const char *help) 247d71ae5a4SJacob Faibussowitsch { 2480d349d43SBarry Smith PetscBagItem item; 2490d349d43SBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 2500d349d43SBarry Smith PetscBool printhelp; 251835f2295SStefano Zampini PetscInt odefault; 2520d349d43SBarry Smith PetscBool flg; 2530d349d43SBarry Smith 2540d349d43SBarry Smith PetscFunctionBegin; 2550d349d43SBarry Smith nname[0] = '-'; 2560d349d43SBarry Smith nname[1] = 0; 257835f2295SStefano Zampini 258835f2295SStefano Zampini PetscCall(PetscIntCast(mdefault, &odefault)); 2599566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 2609566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 26148a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%" PetscInt_FMT ">: %s \n", bag->bagprefix ? bag->bagprefix : "", name, odefault, help)); 2629566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, bag->bagprefix, nname, &odefault, &flg)); 263835f2295SStefano Zampini if (flg) mdefault = odefault; 2640d349d43SBarry Smith 2659566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 2660d349d43SBarry Smith item->dtype = PETSC_INT; 2676497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 2685f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 26902c9f0b5SLisandro Dalcin item->next = NULL; 2700d349d43SBarry Smith item->msize = 1; 271bafee8b4SSatish Balay *(PetscInt64 *)addr = mdefault; 2729566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 2733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2740d349d43SBarry Smith } 2750d349d43SBarry Smith 276dd66f111SBlaise Bourdin /*@C 277811af0c4SBarry Smith PetscBagRegisterBoolArray - add a n `PetscBool` values to a `PetscBag` 278dd66f111SBlaise Bourdin 279c3339decSBarry Smith Logically Collective 280dd66f111SBlaise Bourdin 281d8d19677SJose E. Roman Input Parameters: 282dd66f111SBlaise Bourdin + bag - the bag of values 283811af0c4SBarry Smith . addr - location of boolean array in struct, for example `¶ms->b` 284dd66f111SBlaise Bourdin . msize - number of entries in array 285dd66f111SBlaise Bourdin . name - name of the boolean array 286dd66f111SBlaise Bourdin - help - longer string with more information about the value 287dd66f111SBlaise Bourdin 288dd66f111SBlaise Bourdin Level: beginner 289dd66f111SBlaise Bourdin 290db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 291db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 292db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 293dd66f111SBlaise Bourdin @*/ 294d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterBoolArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help) 295d71ae5a4SJacob Faibussowitsch { 296dd66f111SBlaise Bourdin PetscBagItem item; 297dd66f111SBlaise Bourdin char nname[PETSC_BAG_NAME_LENGTH + 1]; 298dd66f111SBlaise Bourdin PetscBool printhelp; 299dd66f111SBlaise Bourdin PetscInt i, tmp = msize; 300dd66f111SBlaise Bourdin 301dd66f111SBlaise Bourdin PetscFunctionBegin; 3024f572ea9SToby Isaac PetscAssertPointer(bag, 1); 3034f572ea9SToby Isaac PetscAssertPointer(addr, 2); 3044f572ea9SToby Isaac PetscAssertPointer(name, 4); 3054f572ea9SToby Isaac PetscAssertPointer(help, 5); 306dd66f111SBlaise Bourdin nname[0] = '-'; 307dd66f111SBlaise Bourdin nname[1] = 0; 3089566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 3099566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 310dd66f111SBlaise Bourdin if (printhelp) { 3119566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <", bag->bagprefix ? bag->bagprefix : "", name)); 31248a46eb9SPierre Jolivet for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%" PetscInt_FMT " ", *((PetscInt *)addr) + i)); 3139566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help)); 314dd66f111SBlaise Bourdin } 3159566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBoolArray(NULL, bag->bagprefix, nname, (PetscBool *)addr, &tmp, NULL)); 316dd66f111SBlaise Bourdin 3179566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 318dd66f111SBlaise Bourdin item->dtype = PETSC_BOOL; 3196497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 3205f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 32102c9f0b5SLisandro Dalcin item->next = NULL; 322dd66f111SBlaise Bourdin item->msize = msize; 3239566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 3243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 325dd66f111SBlaise Bourdin } 326dd66f111SBlaise Bourdin 3275c6c1daeSBarry Smith /*@C 328811af0c4SBarry Smith PetscBagRegisterString - add a string value to a `PetscBag` 3295c6c1daeSBarry Smith 330c3339decSBarry Smith Logically Collective 3315c6c1daeSBarry Smith 332d8d19677SJose E. Roman Input Parameters: 3335c6c1daeSBarry Smith + bag - the bag of values 334811af0c4SBarry Smith . addr - location of start of string in struct, for example `¶ms->mystring` 3355c6c1daeSBarry Smith . msize - length of the string space in the struct 3365c6c1daeSBarry Smith . mdefault - the initial value 3375c6c1daeSBarry Smith . name - name of the string 3385c6c1daeSBarry Smith - help - longer string with more information about the value 3395c6c1daeSBarry Smith 3405c6c1daeSBarry Smith Level: beginner 3415c6c1daeSBarry Smith 34209cbc92aSBarry Smith Note: 34309cbc92aSBarry Smith The struct must have the field char mystring[`msize`]; not char *mystring 3445c6c1daeSBarry Smith 345db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 346db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 347c2e3fba1SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 3485c6c1daeSBarry Smith @*/ 349*ce78bad3SBarry Smith PetscErrorCode PetscBagRegisterString(PetscBag bag, void *addr, PetscInt msize, const char *mdefault, const char *name, const char *help) PeNS 350d71ae5a4SJacob Faibussowitsch { 3515c6c1daeSBarry Smith PetscBagItem item; 3525c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 3535c6c1daeSBarry Smith PetscBool printhelp; 3545c6c1daeSBarry Smith 3555c6c1daeSBarry Smith PetscFunctionBegin; 3564f572ea9SToby Isaac PetscAssertPointer(bag, 1); 3574f572ea9SToby Isaac PetscAssertPointer(addr, 2); 3584f572ea9SToby Isaac PetscAssertPointer(mdefault, 4); 3594f572ea9SToby Isaac PetscAssertPointer(name, 5); 3604f572ea9SToby Isaac PetscAssertPointer(help, 6); 3615c6c1daeSBarry Smith nname[0] = '-'; 3625c6c1daeSBarry Smith nname[1] = 0; 3639566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 3649566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 36548a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%s>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, mdefault, help)); 3665c6c1daeSBarry Smith 3679566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 3685c6c1daeSBarry Smith item->dtype = PETSC_CHAR; 3696497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 3705f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 37102c9f0b5SLisandro Dalcin item->next = NULL; 3725c6c1daeSBarry Smith item->msize = msize; 37348a46eb9SPierre Jolivet if (mdefault != (char *)addr) PetscCall(PetscStrncpy((char *)addr, mdefault, msize - 1)); 3749566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, bag->bagprefix, nname, (char *)addr, msize, NULL)); 3759566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 3763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3775c6c1daeSBarry Smith } 3785c6c1daeSBarry Smith 3795c6c1daeSBarry Smith /*@C 380811af0c4SBarry Smith PetscBagRegisterReal - add a `PetscReal` value to a `PetscBag` 3815c6c1daeSBarry Smith 382c3339decSBarry Smith Logically Collective 3835c6c1daeSBarry Smith 384d8d19677SJose E. Roman Input Parameters: 3855c6c1daeSBarry Smith + bag - the bag of values 38609cbc92aSBarry Smith . addr - location of `PetscReal` in struct, for example `¶ms->r` 3875c6c1daeSBarry Smith . mdefault - the initial value 3885c6c1daeSBarry Smith . name - name of the variable 3895c6c1daeSBarry Smith - help - longer string with more information about the value 3905c6c1daeSBarry Smith 3915c6c1daeSBarry Smith Level: beginner 3925c6c1daeSBarry Smith 393db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 394db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 395db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 3965c6c1daeSBarry Smith @*/ 397d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterReal(PetscBag bag, void *addr, PetscReal mdefault, const char *name, const char *help) 398d71ae5a4SJacob Faibussowitsch { 3995c6c1daeSBarry Smith PetscBagItem item; 4005c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 4015c6c1daeSBarry Smith PetscBool printhelp; 4025c6c1daeSBarry Smith 4035c6c1daeSBarry Smith PetscFunctionBegin; 4044f572ea9SToby Isaac PetscAssertPointer(bag, 1); 4054f572ea9SToby Isaac PetscAssertPointer(addr, 2); 4064f572ea9SToby Isaac PetscAssertPointer(name, 4); 4074f572ea9SToby Isaac PetscAssertPointer(help, 5); 4085c6c1daeSBarry Smith nname[0] = '-'; 4095c6c1daeSBarry Smith nname[1] = 0; 4109566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 4119566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 41248a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%g>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, (double)mdefault, help)); 4139566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(NULL, bag->bagprefix, nname, &mdefault, NULL)); 4145c6c1daeSBarry Smith 4159566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 4165c6c1daeSBarry Smith item->dtype = PETSC_REAL; 4176497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 4185f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 41902c9f0b5SLisandro Dalcin item->next = NULL; 4205c6c1daeSBarry Smith item->msize = 1; 4215c6c1daeSBarry Smith *(PetscReal *)addr = mdefault; 4229566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 4233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4245c6c1daeSBarry Smith } 4255c6c1daeSBarry Smith 4265c6c1daeSBarry Smith /*@C 427811af0c4SBarry Smith PetscBagRegisterScalar - add a `PetscScalar` value to a `PetscBag` 4285c6c1daeSBarry Smith 429c3339decSBarry Smith Logically Collective 4305c6c1daeSBarry Smith 431d8d19677SJose E. Roman Input Parameters: 4325c6c1daeSBarry Smith + bag - the bag of values 43309cbc92aSBarry Smith . addr - location of `PetscScalar` in struct, for example `¶ms->c` 4345c6c1daeSBarry Smith . mdefault - the initial value 4355c6c1daeSBarry Smith . name - name of the variable 4365c6c1daeSBarry Smith - help - longer string with more information about the value 4375c6c1daeSBarry Smith 4385c6c1daeSBarry Smith Level: beginner 4395c6c1daeSBarry Smith 440db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 44142747ad1SJacob Faibussowitsch `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagSetFromOptions()`, 44242747ad1SJacob Faibussowitsch `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 4435c6c1daeSBarry Smith @*/ 444d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterScalar(PetscBag bag, void *addr, PetscScalar mdefault, const char *name, const char *help) 445d71ae5a4SJacob Faibussowitsch { 4465c6c1daeSBarry Smith PetscBagItem item; 4475c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 4485c6c1daeSBarry Smith PetscBool printhelp; 4495c6c1daeSBarry Smith 4505c6c1daeSBarry Smith PetscFunctionBegin; 4514f572ea9SToby Isaac PetscAssertPointer(bag, 1); 4524f572ea9SToby Isaac PetscAssertPointer(addr, 2); 4534f572ea9SToby Isaac PetscAssertPointer(name, 4); 4544f572ea9SToby Isaac PetscAssertPointer(help, 5); 4555c6c1daeSBarry Smith nname[0] = '-'; 4565c6c1daeSBarry Smith nname[1] = 0; 4579566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 4589566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 45948a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%g + %gi>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, (double)PetscRealPart(mdefault), (double)PetscImaginaryPart(mdefault), help)); 4609566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, bag->bagprefix, nname, &mdefault, NULL)); 4615c6c1daeSBarry Smith 4629566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 4635c6c1daeSBarry Smith item->dtype = PETSC_SCALAR; 4646497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 4655f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 46602c9f0b5SLisandro Dalcin item->next = NULL; 4675c6c1daeSBarry Smith item->msize = 1; 4685c6c1daeSBarry Smith *(PetscScalar *)addr = mdefault; 4699566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 4703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4715c6c1daeSBarry Smith } 4725c6c1daeSBarry Smith 4735c6c1daeSBarry Smith /*@C 474811af0c4SBarry Smith PetscBagRegisterBool - add a `PetscBool` to a `PetscBag` 4755c6c1daeSBarry Smith 476c3339decSBarry Smith Logically Collective 4775c6c1daeSBarry Smith 478d8d19677SJose E. Roman Input Parameters: 4795c6c1daeSBarry Smith + bag - the bag of values 48009cbc92aSBarry Smith . addr - location of `PetscBool` in struct, for example `¶ms->b` 481811af0c4SBarry Smith . mdefault - the initial value, either `PETSC_FALSE` or `PETSC_TRUE` 4825c6c1daeSBarry Smith . name - name of the variable 4835c6c1daeSBarry Smith - help - longer string with more information about the value 4845c6c1daeSBarry Smith 4855c6c1daeSBarry Smith Level: beginner 4865c6c1daeSBarry Smith 487db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 48842747ad1SJacob Faibussowitsch `PetscBagRegisterInt()`, `PetscBagRegisterScalar()` 489db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 4905c6c1daeSBarry Smith @*/ 491d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterBool(PetscBag bag, void *addr, PetscBool mdefault, const char *name, const char *help) 492d71ae5a4SJacob Faibussowitsch { 4935c6c1daeSBarry Smith PetscBagItem item; 4945c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 4955c6c1daeSBarry Smith PetscBool printhelp; 4965c6c1daeSBarry Smith 4975c6c1daeSBarry Smith PetscFunctionBegin; 4984f572ea9SToby Isaac PetscAssertPointer(bag, 1); 4994f572ea9SToby Isaac PetscAssertPointer(addr, 2); 5004f572ea9SToby Isaac PetscAssertPointer(name, 4); 5014f572ea9SToby Isaac PetscAssertPointer(help, 5); 5025c6c1daeSBarry Smith nname[0] = '-'; 5035c6c1daeSBarry Smith nname[1] = 0; 5049566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 5059566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 50648a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%s>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, PetscBools[mdefault], help)); 5079566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, bag->bagprefix, nname, &mdefault, NULL)); 5085c6c1daeSBarry Smith 5099566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 5105c6c1daeSBarry Smith item->dtype = PETSC_BOOL; 5116497c311SBarry Smith item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag)); 5125f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 51302c9f0b5SLisandro Dalcin item->next = NULL; 5145c6c1daeSBarry Smith item->msize = 1; 5155c6c1daeSBarry Smith *(PetscBool *)addr = mdefault; 5169566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 5173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5185c6c1daeSBarry Smith } 5195c6c1daeSBarry Smith 5200764c050SBarry Smith /*@ 521811af0c4SBarry Smith PetscBagDestroy - Destroys a `PetscBag` 5225c6c1daeSBarry Smith 523c3339decSBarry Smith Collective 5245c6c1daeSBarry Smith 5255c6c1daeSBarry Smith Input Parameter: 5265c6c1daeSBarry Smith . bag - the bag of values 5275c6c1daeSBarry Smith 5285c6c1daeSBarry Smith Level: beginner 5295c6c1daeSBarry Smith 530db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 531db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 532db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 5335c6c1daeSBarry Smith @*/ 534d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagDestroy(PetscBag *bag) 535d71ae5a4SJacob Faibussowitsch { 5365f80ce2aSJacob Faibussowitsch PetscBagItem nitem; 5375c6c1daeSBarry Smith 5385c6c1daeSBarry Smith PetscFunctionBegin; 5393ba16761SJacob Faibussowitsch if (!*bag) PetscFunctionReturn(PETSC_SUCCESS); 5404f572ea9SToby Isaac PetscAssertPointer(*bag, 1); 5415f80ce2aSJacob Faibussowitsch nitem = (*bag)->bagitems; 5425c6c1daeSBarry Smith while (nitem) { 5435f80ce2aSJacob Faibussowitsch PetscBagItem item = nitem->next; 5445f80ce2aSJacob Faibussowitsch 5459566063dSJacob Faibussowitsch if (nitem->list) PetscCall(PetscStrArrayDestroy(&nitem->list)); 5469566063dSJacob Faibussowitsch PetscCall(PetscFree(nitem)); 5475c6c1daeSBarry Smith nitem = item; 5485c6c1daeSBarry Smith } 5499566063dSJacob Faibussowitsch if ((*bag)->bagprefix) PetscCall(PetscFree((*bag)->bagprefix)); 5509566063dSJacob Faibussowitsch PetscCall(PetscFree(*bag)); 5513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5525c6c1daeSBarry Smith } 5535c6c1daeSBarry Smith 5545c6c1daeSBarry Smith /*@ 555811af0c4SBarry Smith PetscBagSetFromOptions - Allows setting entries to a `PetscBag` using the options database 5565c6c1daeSBarry Smith 557c3339decSBarry Smith Collective 5585c6c1daeSBarry Smith 5595c6c1daeSBarry Smith Input Parameter: 5605c6c1daeSBarry Smith . bag - the bag of values 5615c6c1daeSBarry Smith 5625c6c1daeSBarry Smith Level: beginner 5635c6c1daeSBarry Smith 564811af0c4SBarry Smith Note: 565811af0c4SBarry Smith The options database keys for the entries are of the form `-[bagprefix]_name value` 566811af0c4SBarry Smith 567db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagLoad()`, `PetscBagGetData()` 568db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 56942747ad1SJacob Faibussowitsch `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagRegisterEnum()` 5705c6c1daeSBarry Smith @*/ 571d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagSetFromOptions(PetscBag bag) 572d71ae5a4SJacob Faibussowitsch { 5735c6c1daeSBarry Smith PetscBagItem nitem = bag->bagitems; 5745c6c1daeSBarry Smith char name[PETSC_BAG_NAME_LENGTH + 1], helpname[PETSC_BAG_NAME_LENGTH + PETSC_BAG_HELP_LENGTH + 3]; 5755c6c1daeSBarry Smith PetscInt n; 5765c6c1daeSBarry Smith 5775c6c1daeSBarry Smith PetscFunctionBegin; 5784f572ea9SToby Isaac PetscAssertPointer(bag, 1); 5799566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(helpname, bag->bagname, sizeof(helpname))); 5809566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(helpname, " ", sizeof(helpname))); 5819566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(helpname, bag->baghelp, sizeof(helpname))); 582d0609cedSBarry Smith PetscOptionsBegin(bag->bagcomm, bag->bagprefix, helpname, NULL); 5835c6c1daeSBarry Smith while (nitem) { 5845c6c1daeSBarry Smith name[0] = '-'; 5855c6c1daeSBarry Smith name[1] = 0; 5869566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(name, nitem->name, sizeof(name))); 5875c6c1daeSBarry Smith if (nitem->dtype == PETSC_CHAR) { /* special handling for fortran required? [due to space padding vs null termination] */ 588835f2295SStefano Zampini char *value = ((char *)bag) + nitem->offset; 5899566063dSJacob Faibussowitsch PetscCall(PetscOptionsString(name, nitem->help, "", value, value, nitem->msize, NULL)); 5905c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_REAL) { 5915c6c1daeSBarry Smith PetscReal *value = (PetscReal *)(((char *)bag) + nitem->offset); 5925c6c1daeSBarry Smith if (nitem->msize == 1) { 5939566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal(name, nitem->help, "", *value, value, NULL)); 5945c6c1daeSBarry Smith } else { 5955c6c1daeSBarry Smith n = nitem->msize; 5969566063dSJacob Faibussowitsch PetscCall(PetscOptionsRealArray(name, nitem->help, "", value, &n, NULL)); 5975c6c1daeSBarry Smith } 5985c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_SCALAR) { 5995c6c1daeSBarry Smith PetscScalar *value = (PetscScalar *)(((char *)bag) + nitem->offset); 6009566063dSJacob Faibussowitsch PetscCall(PetscOptionsScalar(name, nitem->help, "", *value, value, NULL)); 6015c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_INT) { 6025c6c1daeSBarry Smith PetscInt *value = (PetscInt *)(((char *)bag) + nitem->offset); 6035c6c1daeSBarry Smith if (nitem->msize == 1) { 6049566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt(name, nitem->help, "", *value, value, NULL)); 6055c6c1daeSBarry Smith } else { 6065c6c1daeSBarry Smith n = nitem->msize; 6079566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray(name, nitem->help, "", value, &n, NULL)); 6085c6c1daeSBarry Smith } 6095c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_ENUM) { 6105c6c1daeSBarry Smith PetscEnum *value = (PetscEnum *)(((char *)bag) + nitem->offset); 6115c6c1daeSBarry Smith PetscInt i = 0; 612fbccb6d4SPierre Jolivet while (nitem->list[i++]); 6139566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum(name, nitem->help, nitem->list[i - 3], (const char *const *)nitem->list, *value, value, NULL)); 6145c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_BOOL) { 6155c6c1daeSBarry Smith PetscBool *value = (PetscBool *)(((char *)bag) + nitem->offset); 616dd66f111SBlaise Bourdin if (nitem->msize == 1) { 6179566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool(name, nitem->help, "", *value, value, NULL)); 618dd66f111SBlaise Bourdin } else { 619dd66f111SBlaise Bourdin n = nitem->msize; 6209566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoolArray(name, nitem->help, "", value, &n, NULL)); 621dd66f111SBlaise Bourdin } 6225c6c1daeSBarry Smith } 6235c6c1daeSBarry Smith nitem = nitem->next; 6245c6c1daeSBarry Smith } 625d0609cedSBarry Smith PetscOptionsEnd(); 6263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6275c6c1daeSBarry Smith } 6285c6c1daeSBarry Smith 629ffeef943SBarry Smith /*@ 6305c6c1daeSBarry Smith PetscBagView - Views a bag of values as either ASCII text or a binary file 6315c6c1daeSBarry Smith 632c3339decSBarry Smith Collective 6335c6c1daeSBarry Smith 634d8d19677SJose E. Roman Input Parameters: 6355c6c1daeSBarry Smith + bag - the bag of values 636aec76313SJacob Faibussowitsch - view - location to view the values 6375c6c1daeSBarry Smith 6385c6c1daeSBarry Smith Level: beginner 6395c6c1daeSBarry Smith 640811af0c4SBarry Smith Note: 641811af0c4SBarry Smith Currently PETSc bags saved in a binary file can only be read back 64209cbc92aSBarry Smith in on a machine with the same binary format. 6435c6c1daeSBarry Smith 644db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagLoad()`, `PetscBagGetData()` 645db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`, `PetscBagRegisterEnum()` 646db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()` 6475c6c1daeSBarry Smith @*/ 648d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagView(PetscBag bag, PetscViewer view) 649d71ae5a4SJacob Faibussowitsch { 6505c6c1daeSBarry Smith PetscBool isascii, isbinary; 6515c6c1daeSBarry Smith PetscBagItem nitem = bag->bagitems; 6525c6c1daeSBarry Smith 6535c6c1daeSBarry Smith PetscFunctionBegin; 6544f572ea9SToby Isaac PetscAssertPointer(bag, 1); 6555f80ce2aSJacob Faibussowitsch PetscValidHeaderSpecific(view, PETSC_VIEWER_CLASSID, 2); 6569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERASCII, &isascii)); 6579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERBINARY, &isbinary)); 6585c6c1daeSBarry Smith if (isascii) { 6593ffde785SBarry Smith if (bag->bagprefix) { 6609566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "PetscBag Object: %s (%s) %s\n", bag->bagname, bag->bagprefix, bag->baghelp)); 6613ffde785SBarry Smith } else { 6629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "PetscBag Object: %s %s\n", bag->bagname, bag->baghelp)); 6633ffde785SBarry Smith } 6645c6c1daeSBarry Smith while (nitem) { 6655c6c1daeSBarry Smith if (nitem->dtype == PETSC_CHAR) { 666835f2295SStefano Zampini char *value = ((char *)bag) + nitem->offset; 667da81f932SPierre Jolivet char tmp = value[nitem->msize - 1]; /* special handling for fortran chars without null terminator */ 6685c6c1daeSBarry Smith value[nitem->msize - 1] = 0; 6699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %s; %s\n", nitem->name, value, nitem->help)); 6705c6c1daeSBarry Smith value[nitem->msize - 1] = tmp; 6715c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_REAL) { 6725c6c1daeSBarry Smith PetscReal *value = (PetscReal *)(((char *)bag) + nitem->offset); 6735c6c1daeSBarry Smith PetscInt i; 6749566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = ", nitem->name)); 67548a46eb9SPierre Jolivet for (i = 0; i < nitem->msize; i++) PetscCall(PetscViewerASCIIPrintf(view, "%g ", (double)value[i])); 6769566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help)); 6775c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_SCALAR) { 6785c6c1daeSBarry Smith PetscScalar value = *(PetscScalar *)(((char *)bag) + nitem->offset); 6795c6c1daeSBarry Smith #if defined(PETSC_USE_COMPLEX) 6808627564fSBarry Smith if ((double)PetscImaginaryPart(value)) { 6819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %g + %gi; %s\n", nitem->name, (double)PetscRealPart(value), (double)PetscImaginaryPart(value), nitem->help)); 6828627564fSBarry Smith } else { 6839566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %g; %s\n", nitem->name, (double)PetscRealPart(value), nitem->help)); 6848627564fSBarry Smith } 6855c6c1daeSBarry Smith #else 6869566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %g; %s\n", nitem->name, (double)value, nitem->help)); 6875c6c1daeSBarry Smith #endif 6885c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_INT) { 6895c6c1daeSBarry Smith PetscInt i, *value = (PetscInt *)(((char *)bag) + nitem->offset); 6909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = ", nitem->name)); 69148a46eb9SPierre Jolivet for (i = 0; i < nitem->msize; i++) PetscCall(PetscViewerASCIIPrintf(view, "%" PetscInt_FMT " ", value[i])); 6929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help)); 6935c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_BOOL) { 694dd66f111SBlaise Bourdin PetscBool *value = (PetscBool *)(((char *)bag) + nitem->offset); 695dd66f111SBlaise Bourdin PetscInt i; 6965c6c1daeSBarry Smith /* some Fortran compilers use -1 as boolean */ 6979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = ", nitem->name)); 698dd66f111SBlaise Bourdin for (i = 0; i < nitem->msize; i++) { 699dd66f111SBlaise Bourdin if (((int)value[i]) == -1) value[i] = PETSC_TRUE; 7005c6c1daeSBarry Smith /* the checks here with != PETSC_FALSE and PETSC_TRUE is a special case; here we truly demand that the value be 0 or 1 */ 701f4f49eeaSPierre Jolivet PetscCheck(value[i] == PETSC_FALSE || value[i] == PETSC_TRUE, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Boolean value for %s %s is corrupt; integer value %" PetscInt_FMT, nitem->name, nitem->help, (PetscInt)value[i]); 7029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s", PetscBools[value[i]])); 703dd66f111SBlaise Bourdin } 7049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help)); 7055c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_ENUM) { 7065c6c1daeSBarry Smith PetscEnum value = *(PetscEnum *)(((char *)bag) + nitem->offset); 7075c6c1daeSBarry Smith PetscInt i = 0; 708fbccb6d4SPierre Jolivet while (nitem->list[i++]); 7099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %s; (%s) %s\n", nitem->name, nitem->list[value], nitem->list[i - 3], nitem->help)); 7105c6c1daeSBarry Smith } 7115c6c1daeSBarry Smith nitem = nitem->next; 7125c6c1daeSBarry Smith } 7135c6c1daeSBarry Smith } else if (isbinary) { 7145c6c1daeSBarry Smith PetscInt classid = PETSC_BAG_FILE_CLASSID, dtype; 7155c6c1daeSBarry Smith PetscInt deprecatedbagsize = 0; 716a261c58fSBarry Smith PetscViewerFormat format; 7179566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &classid, 1, PETSC_INT)); 7189566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &deprecatedbagsize, 1, PETSC_INT)); 7199566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &bag->count, 1, PETSC_INT)); 7209566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, bag->bagname, PETSC_BAG_NAME_LENGTH, PETSC_CHAR)); 7219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, bag->baghelp, PETSC_BAG_HELP_LENGTH, PETSC_CHAR)); 7225c6c1daeSBarry Smith while (nitem) { 7239566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &nitem->offset, 1, PETSC_INT)); 7245c6c1daeSBarry Smith dtype = (PetscInt)nitem->dtype; 7259566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &dtype, 1, PETSC_INT)); 7269566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, nitem->name, PETSC_BAG_NAME_LENGTH, PETSC_CHAR)); 7279566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, nitem->help, PETSC_BAG_HELP_LENGTH, PETSC_CHAR)); 7289566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &nitem->msize, 1, PETSC_INT)); 7295c6c1daeSBarry Smith /* some Fortran compilers use -1 as boolean */ 730f4f49eeaSPierre Jolivet if (dtype == PETSC_BOOL && (*(int *)(((char *)bag) + nitem->offset) == -1)) *(int *)(((char *)bag) + nitem->offset) = PETSC_TRUE; 7315c6c1daeSBarry Smith 73257508eceSPierre Jolivet PetscCall(PetscViewerBinaryWrite(view, (char *)bag + nitem->offset, nitem->msize, nitem->dtype)); 73348a46eb9SPierre Jolivet if (dtype == PETSC_ENUM) PetscCall(PetscViewerBinaryWriteStringArray(view, (const char *const *)nitem->list)); 7345c6c1daeSBarry Smith nitem = nitem->next; 7355c6c1daeSBarry Smith } 7369566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(view, &format)); 737a261c58fSBarry Smith if (format == PETSC_VIEWER_BINARY_MATLAB) { 738a261c58fSBarry Smith MPI_Comm comm; 739a261c58fSBarry Smith FILE *info; 7409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)view, &comm)); 7419566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetInfoPointer(view, &info)); 7429566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(comm, info, "#--- begin code written by PetscViewerBinary for MATLAB format ---#\n")); 7439566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(comm, info, "#$$ Set.%s = PetscBinaryRead(fd);\n", bag->bagname)); 7449566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(comm, info, "#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n")); 745a261c58fSBarry Smith } 746a261c58fSBarry Smith } 7473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7485c6c1daeSBarry Smith } 7495c6c1daeSBarry Smith 750ffeef943SBarry Smith /*@ 75109cbc92aSBarry Smith PetscBagViewFromOptions - Processes command line options to determine if/how a `PetscBag` is to be viewed. 752173f9484SMatthew G. Knepley 753c3339decSBarry Smith Collective 754173f9484SMatthew G. Knepley 755173f9484SMatthew G. Knepley Input Parameters: 756aec76313SJacob Faibussowitsch + bag - the object 75709cbc92aSBarry Smith . bobj - optional other object that provides prefix (if `NULL` then the prefix in obj is used) 758173f9484SMatthew G. Knepley - optionname - option to activate viewing 759478db826SMatthew G. Knepley 760173f9484SMatthew G. Knepley Level: intermediate 761478db826SMatthew G. Knepley 762db781477SPatrick Sanan .seealso: `PetscBagCreate()`, `PetscBag`, `PetscViewer` 763173f9484SMatthew G. Knepley @*/ 764d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagViewFromOptions(PetscBag bag, PetscObject bobj, const char optionname[]) 765d71ae5a4SJacob Faibussowitsch { 766173f9484SMatthew G. Knepley static PetscBool incall = PETSC_FALSE; 767173f9484SMatthew G. Knepley PetscViewer viewer; 768173f9484SMatthew G. Knepley PetscViewerFormat format; 769173f9484SMatthew G. Knepley const char *prefix, *bprefix = NULL; 770173f9484SMatthew G. Knepley PetscBool flg; 771173f9484SMatthew G. Knepley 772173f9484SMatthew G. Knepley PetscFunctionBegin; 7733ba16761SJacob Faibussowitsch if (incall) PetscFunctionReturn(PETSC_SUCCESS); 774173f9484SMatthew G. Knepley incall = PETSC_TRUE; 7754f572ea9SToby Isaac PetscAssertPointer(bag, 1); 7769566063dSJacob Faibussowitsch if (bobj) PetscCall(PetscObjectGetOptionsPrefix(bobj, &bprefix)); 777173f9484SMatthew G. Knepley prefix = bobj ? bprefix : bag->bagprefix; 778648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(bag->bagcomm, NULL, prefix, optionname, &viewer, &format, &flg)); 779173f9484SMatthew G. Knepley if (flg) { 7809566063dSJacob Faibussowitsch PetscCall(PetscViewerPushFormat(viewer, format)); 7819566063dSJacob Faibussowitsch PetscCall(PetscBagView(bag, viewer)); 7829566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7839566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 784648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 785173f9484SMatthew G. Knepley } 786173f9484SMatthew G. Knepley incall = PETSC_FALSE; 7873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 788173f9484SMatthew G. Knepley } 789173f9484SMatthew G. Knepley 790ffeef943SBarry Smith /*@ 7915c6c1daeSBarry Smith PetscBagLoad - Loads a bag of values from a binary file 7925c6c1daeSBarry Smith 793c3339decSBarry Smith Collective 7945c6c1daeSBarry Smith 795d8d19677SJose E. Roman Input Parameters: 796aec76313SJacob Faibussowitsch + view - file to load values from 7975c6c1daeSBarry Smith - bag - the bag of values 7985c6c1daeSBarry Smith 7995c6c1daeSBarry Smith Level: beginner 8005c6c1daeSBarry Smith 80109cbc92aSBarry Smith Note: 80209cbc92aSBarry Smith You must have created and registered all the fields in the bag before loading into it. This only loads values. 80309cbc92aSBarry Smith 804db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagView()`, `PetscBagGetData()` 805db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 806db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 8075c6c1daeSBarry Smith @*/ 808d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagLoad(PetscViewer view, PetscBag bag) 809d71ae5a4SJacob Faibussowitsch { 8105c6c1daeSBarry Smith PetscBool isbinary; 8115f80ce2aSJacob Faibussowitsch PetscInt classid, bagcount, dtype, msize, offset, deprecatedbagsize; 8125c6c1daeSBarry Smith char name[PETSC_BAG_NAME_LENGTH], help[PETSC_BAG_HELP_LENGTH], **list; 8135c6c1daeSBarry Smith PetscBagItem nitem; 8145c6c1daeSBarry Smith MPI_Comm comm; 8155c6c1daeSBarry Smith PetscMPIInt flag; 8165c6c1daeSBarry Smith 8175c6c1daeSBarry Smith PetscFunctionBegin; 8185f80ce2aSJacob Faibussowitsch PetscValidHeaderSpecific(view, PETSC_VIEWER_CLASSID, 1); 8194f572ea9SToby Isaac PetscAssertPointer(bag, 2); 8209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)view, &comm)); 8219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(comm, bag->bagcomm, &flag)); 8225f80ce2aSJacob Faibussowitsch PetscCheck(flag == MPI_CONGRUENT || flag == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "Different communicators in the viewer and bag"); 8239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERBINARY, &isbinary)); 8245f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this viewer type"); 8255c6c1daeSBarry Smith 8269566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &classid, 1, NULL, PETSC_INT)); 8275f80ce2aSJacob Faibussowitsch PetscCheck(classid == PETSC_BAG_FILE_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not PetscBag next in binary file"); 8289566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &deprecatedbagsize, 1, NULL, PETSC_INT)); 8299566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &bagcount, 1, NULL, PETSC_INT)); 830835f2295SStefano Zampini PetscCheck(bagcount == bag->count, comm, PETSC_ERR_ARG_INCOMP, "Bag in file has different number of entries %" PetscInt_FMT " then passed in bag %" PetscInt_FMT, bagcount, bag->count); 8319566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, bag->bagname, PETSC_BAG_NAME_LENGTH, NULL, PETSC_CHAR)); 8329566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, bag->baghelp, PETSC_BAG_HELP_LENGTH, NULL, PETSC_CHAR)); 8335c6c1daeSBarry Smith 8345c6c1daeSBarry Smith nitem = bag->bagitems; 8355f80ce2aSJacob Faibussowitsch for (PetscInt i = 0; i < bagcount; i++) { 8369566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &offset, 1, NULL, PETSC_INT)); 8375c6c1daeSBarry Smith /* ignore the offset in the file */ 8389566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &dtype, 1, NULL, PETSC_INT)); 8399566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, name, PETSC_BAG_NAME_LENGTH, NULL, PETSC_CHAR)); 8409566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, help, PETSC_BAG_HELP_LENGTH, NULL, PETSC_CHAR)); 8419566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &msize, 1, NULL, PETSC_INT)); 8425c6c1daeSBarry Smith 8435c6c1daeSBarry Smith if (dtype == (PetscInt)PETSC_CHAR) { 8449566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_CHAR)); 8455c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_REAL) { 8469566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_REAL)); 8475c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_SCALAR) { 8489566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, 1, NULL, PETSC_SCALAR)); 8495c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_INT) { 8509566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_INT)); 8515c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_BOOL) { 8529566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_BOOL)); 8535c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_ENUM) { 8549566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, 1, NULL, PETSC_ENUM)); 8559566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadStringArray(view, &list)); 8565c6c1daeSBarry Smith /* don't need to save list because it is already registered in the bag */ 8579566063dSJacob Faibussowitsch PetscCall(PetscFree(list)); 8585c6c1daeSBarry Smith } 8595c6c1daeSBarry Smith nitem = nitem->next; 8605c6c1daeSBarry Smith } 8613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8625c6c1daeSBarry Smith } 8635c6c1daeSBarry Smith 864e8976759SBarry Smith /*@C 86509cbc92aSBarry Smith PetscBagCreate - Create a bag of values. A `PetscBag` is a representation of a C struct that can be saved to and read from files, 86609cbc92aSBarry Smith can have values set from the options database 8675c6c1daeSBarry Smith 868d083f849SBarry Smith Collective 8695c6c1daeSBarry Smith 8705c6c1daeSBarry Smith Input Parameters: 8715c6c1daeSBarry Smith + comm - communicator to share bag 872*ce78bad3SBarry Smith - bagsize - size of the C structure holding the values, for example `sizeof(mystruct)` 8735c6c1daeSBarry Smith 8745c6c1daeSBarry Smith Output Parameter: 8755c6c1daeSBarry Smith . bag - the bag of values 8765c6c1daeSBarry Smith 877aec76313SJacob Faibussowitsch Level: intermediate 87809cbc92aSBarry Smith 8795c6c1daeSBarry Smith Notes: 880811af0c4SBarry Smith After creating the bag, for each entry in the C struct call the appropriate `PetscBagRegisterInt()` etc to define the C structs layout 881811af0c4SBarry Smith 882377f809aSBarry Smith The size of the struct must be small enough to fit in a `PetscInt`; by default 883811af0c4SBarry Smith `PetscInt` is 4 bytes; this means a bag cannot be larger than 2 gigabytes in length. 884377f809aSBarry Smith The warning about casting to a shorter length can be ignored below unless your struct is too large 8855c6c1daeSBarry Smith 886db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 887db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 88842747ad1SJacob Faibussowitsch `PetscBagSetFromOptions()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 8895c6c1daeSBarry Smith @*/ 890d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagCreate(MPI_Comm comm, size_t bagsize, PetscBag *bag) 891d71ae5a4SJacob Faibussowitsch { 8925f80ce2aSJacob Faibussowitsch const size_t totalsize = bagsize + sizeof(struct _n_PetscBag) + sizeof(PetscScalar); 8935c6c1daeSBarry Smith 8945c6c1daeSBarry Smith PetscFunctionBegin; 8954f572ea9SToby Isaac PetscAssertPointer(bag, 3); 896377f809aSBarry Smith 8979566063dSJacob Faibussowitsch PetscCall(PetscInfo(NULL, "Creating Bag with total size %d\n", (int)totalsize)); 8989566063dSJacob Faibussowitsch PetscCall(PetscCalloc(totalsize, bag)); 8996497c311SBarry Smith PetscCall(PetscIntCast(totalsize, &(*bag)->bagsize)); 9005c6c1daeSBarry Smith (*bag)->bagcomm = comm; 9010298fd71SBarry Smith (*bag)->bagprefix = NULL; 9025c6c1daeSBarry Smith (*bag)->structlocation = (void *)(((char *)(*bag)) + sizeof(PetscScalar) * (sizeof(struct _n_PetscBag) / sizeof(PetscScalar)) + sizeof(PetscScalar)); 9033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9045c6c1daeSBarry Smith } 9055c6c1daeSBarry Smith 906cc4c1da9SBarry Smith /*@ 9075c6c1daeSBarry Smith PetscBagSetName - Sets the name of a bag of values 9085c6c1daeSBarry Smith 9095c6c1daeSBarry Smith Not Collective 9105c6c1daeSBarry Smith 911aec76313SJacob Faibussowitsch Level: intermediate 9125c6c1daeSBarry Smith 9135c6c1daeSBarry Smith Input Parameters: 9145c6c1daeSBarry Smith + bag - the bag of values 9155c6c1daeSBarry Smith . name - the name assigned to the bag 9165c6c1daeSBarry Smith - help - help message for bag 9175c6c1daeSBarry Smith 918db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 919db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 920db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 9215c6c1daeSBarry Smith @*/ 922*ce78bad3SBarry Smith PetscErrorCode PetscBagSetName(PetscBag bag, const char name[], const char help[]) 923d71ae5a4SJacob Faibussowitsch { 9245c6c1daeSBarry Smith PetscFunctionBegin; 9254f572ea9SToby Isaac PetscAssertPointer(bag, 1); 9264f572ea9SToby Isaac PetscAssertPointer(name, 2); 9274f572ea9SToby Isaac PetscAssertPointer(help, 3); 9289566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(bag->bagname, name, PETSC_BAG_NAME_LENGTH - 1)); 9299566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(bag->baghelp, help, PETSC_BAG_HELP_LENGTH - 1)); 9303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9315c6c1daeSBarry Smith } 9325c6c1daeSBarry Smith 9335c6c1daeSBarry Smith /*@C 9345c6c1daeSBarry Smith PetscBagGetName - Gets the name of a bag of values 9355c6c1daeSBarry Smith 9365c6c1daeSBarry Smith Not Collective 9375c6c1daeSBarry Smith 938aec76313SJacob Faibussowitsch Level: intermediate 9395c6c1daeSBarry Smith 9405c6c1daeSBarry Smith Input Parameter: 9415c6c1daeSBarry Smith . bag - the bag of values 9425c6c1daeSBarry Smith 9435c6c1daeSBarry Smith Output Parameter: 9445c6c1daeSBarry Smith . name - the name assigned to the bag 9455c6c1daeSBarry Smith 946db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 947db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 948db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 9495c6c1daeSBarry Smith @*/ 950cc4c1da9SBarry Smith PetscErrorCode PetscBagGetName(PetscBag bag, const char **name) 951d71ae5a4SJacob Faibussowitsch { 9525c6c1daeSBarry Smith PetscFunctionBegin; 9534f572ea9SToby Isaac PetscAssertPointer(bag, 1); 9544f572ea9SToby Isaac PetscAssertPointer(name, 2); 9555c6c1daeSBarry Smith *name = bag->bagname; 9563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9575c6c1daeSBarry Smith } 9585c6c1daeSBarry Smith 9595c6c1daeSBarry Smith /*@C 9605c6c1daeSBarry Smith PetscBagGetData - Gives back the user - access to memory that 961811af0c4SBarry Smith can be used for storing user-data-structure 9625c6c1daeSBarry Smith 9635c6c1daeSBarry Smith Not Collective 9645c6c1daeSBarry Smith 9655c6c1daeSBarry Smith Input Parameter: 9665c6c1daeSBarry Smith . bag - the bag of values 9675c6c1daeSBarry Smith 9685c6c1daeSBarry Smith Output Parameter: 96909cbc92aSBarry Smith . data - pointer to memory that will have user-data-structure, this can be cast to a pointer of the type the C struct used in 97009cbc92aSBarry Smith defining the bag 97109cbc92aSBarry Smith 972aec76313SJacob Faibussowitsch Level: intermediate 9735c6c1daeSBarry Smith 974db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()` 975db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 976db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 9775c6c1daeSBarry Smith @*/ 978*ce78bad3SBarry Smith PetscErrorCode PetscBagGetData(PetscBag bag, PeCtx data) 979d71ae5a4SJacob Faibussowitsch { 9805c6c1daeSBarry Smith PetscFunctionBegin; 9814f572ea9SToby Isaac PetscAssertPointer(bag, 1); 9824f572ea9SToby Isaac PetscAssertPointer(data, 2); 983*ce78bad3SBarry Smith *(void **)data = bag->structlocation; 9843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9855c6c1daeSBarry Smith } 9865c6c1daeSBarry Smith 987cc4c1da9SBarry Smith /*@ 9885c6c1daeSBarry Smith PetscBagSetOptionsPrefix - Sets the prefix used for searching for all 989811af0c4SBarry Smith `PetscBag` items in the options database. 9905c6c1daeSBarry Smith 99109cbc92aSBarry Smith Logically Collective 9925c6c1daeSBarry Smith 993aec76313SJacob Faibussowitsch Level: intermediate 9945c6c1daeSBarry Smith 9955c6c1daeSBarry Smith Input Parameters: 9965c6c1daeSBarry Smith + bag - the bag of values 997aec76313SJacob Faibussowitsch - pre - the prefix to prepend all Bag item names with. 9985c6c1daeSBarry Smith 99909cbc92aSBarry Smith Note: 100009cbc92aSBarry Smith Must be called prior to registering any of the bag items. 10015c6c1daeSBarry Smith 1002db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 1003db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 10045c6c1daeSBarry Smith @*/ 1005d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagSetOptionsPrefix(PetscBag bag, const char pre[]) 1006d71ae5a4SJacob Faibussowitsch { 10075c6c1daeSBarry Smith PetscFunctionBegin; 10084f572ea9SToby Isaac PetscAssertPointer(bag, 1); 10095f80ce2aSJacob Faibussowitsch if (pre) { 10104f572ea9SToby Isaac PetscAssertPointer(pre, 2); 10115f80ce2aSJacob Faibussowitsch PetscCheck(pre[0] != '-', PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Options prefix should not begin with a hyphen"); 10129566063dSJacob Faibussowitsch PetscCall(PetscFree(bag->bagprefix)); 1013f4f49eeaSPierre Jolivet PetscCall(PetscStrallocpy(pre, &bag->bagprefix)); 10149566063dSJacob Faibussowitsch } else PetscCall(PetscFree(bag->bagprefix)); 10153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10165c6c1daeSBarry Smith } 1017ffb7e86cSMatthew G. Knepley 1018ffb7e86cSMatthew G. Knepley /*@C 1019ffb7e86cSMatthew G. Knepley PetscBagGetNames - Get the names of all entries in the bag 1020ffb7e86cSMatthew G. Knepley 102109cbc92aSBarry Smith Not Collective 1022ffb7e86cSMatthew G. Knepley 10232fe279fdSBarry Smith Input Parameter: 10242fe279fdSBarry Smith . bag - the bag of values 1025ffb7e86cSMatthew G. Knepley 1026ffb7e86cSMatthew G. Knepley Output Parameter: 102726a11704SBarry Smith . names - pass in an array of char pointers to hold the names. The array must be as long as the number of items in the bag. 1028ffb7e86cSMatthew G. Knepley 1029ffb7e86cSMatthew G. Knepley Level: intermediate 1030ffb7e86cSMatthew G. Knepley 1031db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagSetName()`, `PetscBagCreate()`, `PetscBagGetData()` 1032db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`, `PetscBagRegisterEnum()` 1033ffb7e86cSMatthew G. Knepley @*/ 1034d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagGetNames(PetscBag bag, const char *names[]) 1035d71ae5a4SJacob Faibussowitsch { 1036ffb7e86cSMatthew G. Knepley PetscBagItem nitem = bag->bagitems; 1037ffb7e86cSMatthew G. Knepley 1038ffb7e86cSMatthew G. Knepley PetscFunctionBegin; 10394f572ea9SToby Isaac PetscAssertPointer(bag, 1); 10404f572ea9SToby Isaac PetscAssertPointer(names, 2); 10415f80ce2aSJacob Faibussowitsch for (PetscInt n = 0; nitem; ++n, nitem = nitem->next) names[n] = nitem->name; 10423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1043ffb7e86cSMatthew G. Knepley } 1044