xref: /petsc/src/sys/classes/matlabengine/matlab.c (revision e0f5bfbec699682fa3e8b8532b1176849ea4e12a)

#include <engine.h> /* MATLAB include file */
#include <petscsys.h>
#include <petscmatlab.h> /*I   "petscmatlab.h"  I*/
#include <petsc/private/petscimpl.h>

struct _p_PetscMatlabEngine {
  PETSCHEADER(int);
  Engine *ep;
  char    buffer[1024];
};

PetscClassId MATLABENGINE_CLASSID = -1;

/*@C
    PetscMatlabEngineCreate - Creates a MATLAB engine object

    Not Collective

    Input Parameters:
+   comm - a separate MATLAB engine is started for each process in the communicator
-   host - name of machine where MATLAB engine is to be run (usually NULL)

    Output Parameter:
.   mengine - the resulting object

   Options Database Keys:
+    -matlab_engine_graphics - allow the MATLAB engine to display graphics
.    -matlab_engine_host - hostname, machine to run the MATLAB engine on
-    -info - print out all requests to MATLAB and all if its responses (for debugging)

   Note:
   If a host string is passed in, any MATLAB scripts that need to run in the
   engine must be available via MATLABPATH on that machine.

   Level: advanced

.seealso: `PetscMatlabEngineDestroy()`, `PetscMatlabEnginePut()`, `PetscMatlabEngineGet()`,
          `PetscMatlabEngineEvaluate()`, `PetscMatlabEngineGetOutput()`, `PetscMatlabEnginePrintOutput()`,
          `PETSC_MATLAB_ENGINE_()`, `PetscMatlabEnginePutArray()`, `PetscMatlabEngineGetArray()`, `PetscMatlabEngine`
@*/
PetscErrorCode PetscMatlabEngineCreate(MPI_Comm comm, const char host[], PetscMatlabEngine *mengine) {
  PetscMPIInt       rank, size;
  char              buffer[256];
  PetscMatlabEngine e;
  PetscBool         flg = PETSC_FALSE;
  char              lhost[64];
  PetscFunctionBegin;
  if (MATLABENGINE_CLASSID == -1) PetscCall(PetscClassIdRegister("MATLAB Engine", &MATLABENGINE_CLASSID));
  PetscCall(PetscHeaderCreate(e, MATLABENGINE_CLASSID, "MatlabEngine", "MATLAB Engine", "Sys", comm, PetscMatlabEngineDestroy, NULL));

  if (!host) {
    PetscCall(PetscOptionsGetString(NULL, NULL, "-matlab_engine_host", lhost, sizeof(lhost), &flg));
    if (flg) host = lhost;
  }
  flg = PETSC_FALSE;
  PetscCall(PetscOptionsGetBool(NULL, NULL, "-matlab_engine_graphics", &flg, NULL));

  if (host) {
    PetscCall(PetscInfo(0, "Starting MATLAB engine on %s\n", host));
    PetscCall(PetscStrcpy(buffer, "ssh "));
    PetscCall(PetscStrcat(buffer, host));
    PetscCall(PetscStrcat(buffer, " \""));
    PetscCall(PetscStrlcat(buffer, PETSC_MATLAB_COMMAND, sizeof(buffer)));
    if (!flg) PetscCall(PetscStrlcat(buffer, " -nodisplay ", sizeof(buffer)));
    PetscCall(PetscStrlcat(buffer, " -nosplash ", sizeof(buffer)));
    PetscCall(PetscStrcat(buffer, "\""));
  } else {
    PetscCall(PetscStrncpy(buffer, PETSC_MATLAB_COMMAND, sizeof(buffer)));
    if (!flg) PetscCall(PetscStrlcat(buffer, " -nodisplay ", sizeof(buffer)));
    PetscCall(PetscStrlcat(buffer, " -nosplash ", sizeof(buffer)));
  }
  PetscCall(PetscInfo(0, "Starting MATLAB engine with command %s\n", buffer));
  e->ep = engOpen(buffer);
  PetscCheck(e->ep, PETSC_COMM_SELF, PETSC_ERR_LIB, "Unable to start MATLAB engine with %s", buffer);
  engOutputBuffer(e->ep, e->buffer, sizeof(e->buffer));
  if (host) PetscCall(PetscInfo(0, "Started MATLAB engine on %s\n", host));
  else PetscCall(PetscInfo(0, "Started MATLAB engine\n"));

  PetscCallMPI(MPI_Comm_rank(comm, &rank));
  PetscCallMPI(MPI_Comm_size(comm, &size));
  PetscCall(PetscMatlabEngineEvaluate(e, "MPI_Comm_rank = %d; MPI_Comm_size = %d;\n", rank, size));
  /* work around bug in MATLAB R2021b https://www.mathworks.com/matlabcentral/answers/1566246-got-error-using-exit-in-nodesktop-mode */
  PetscCall(PetscMatlabEngineEvaluate(e, "settings"));
  *mengine = e;
  PetscFunctionReturn(0);
}

/*@
   PetscMatlabEngineDestroy - Shuts down a MATLAB engine.

   Collective on v

   Input Parameters:
.  e  - the engine

   Level: advanced

.seealso: `PetscMatlabEngineCreate()`, `PetscMatlabEnginePut()`, `PetscMatlabEngineGet()`,
          `PetscMatlabEngineEvaluate()`, `PetscMatlabEngineGetOutput()`, `PetscMatlabEnginePrintOutput()`,
          `PETSC_MATLAB_ENGINE_()`, `PetscMatlabEnginePutArray()`, `PetscMatlabEngineGetArray()`, `PetscMatlabEngine`
@*/
PetscErrorCode PetscMatlabEngineDestroy(PetscMatlabEngine *v) {
  int err;

  PetscFunctionBegin;
  if (!*v) PetscFunctionReturn(0);
  PetscValidHeaderSpecific(*v, MATLABENGINE_CLASSID, 1);
  if (--((PetscObject)(*v))->refct > 0) PetscFunctionReturn(0);
  PetscCall(PetscInfo(0, "Stopping MATLAB engine\n"));
  err = engClose((*v)->ep);
  PetscCheck(!err, PETSC_COMM_SELF, PETSC_ERR_LIB, "Error closing Matlab engine");
  PetscCall(PetscInfo(0, "MATLAB engine stopped\n"));
  PetscCall(PetscHeaderDestroy(v));
  PetscFunctionReturn(0);
}

/*@C
    PetscMatlabEngineEvaluate - Evaluates a string in MATLAB

    Not Collective

    Input Parameters:
+   mengine - the MATLAB engine
-   string - format as in a printf()

   Notes:
   Run the PETSc program with -info to always have printed back MATLAB's response to the string evaluation

   If the string utilizes a MATLAB script that needs to run in the engine, the script must be available via MATLABPATH on that machine.

   Level: advanced

.seealso: `PetscMatlabEngineDestroy()`, `PetscMatlabEnginePut()`, `PetscMatlabEngineGet()`,
          `PetscMatlabEngineCreate()`, `PetscMatlabEngineGetOutput()`, `PetscMatlabEnginePrintOutput()`,
          `PETSC_MATLAB_ENGINE_()`, `PetscMatlabEnginePutArray()`, `PetscMatlabEngineGetArray()`, `PetscMatlabEngine`
@*/
PetscErrorCode PetscMatlabEngineEvaluate(PetscMatlabEngine mengine, const char string[], ...) {
  va_list Argp;
  char    buffer[1024];
  size_t  fullLength;

  PetscFunctionBegin;
  va_start(Argp, string);
  PetscCall(PetscVSNPrintf(buffer, sizeof(buffer) - 9 - 5, string, &fullLength, Argp));
  va_end(Argp);

  PetscCall(PetscInfo(0, "Evaluating MATLAB string: %s\n", buffer));
  engEvalString(mengine->ep, buffer);
  PetscCall(PetscInfo(0, "Done evaluating MATLAB string: %s\n", buffer));
  PetscCall(PetscInfo(0, "  MATLAB output message: %s\n", mengine->buffer));

  /*
     Check for error in MATLAB: indicated by ? as first character in engine->buffer
  */
  PetscCheck(mengine->buffer[4] != '?', PETSC_COMM_SELF, PETSC_ERR_LIB, "Error in evaluating MATLAB command:%s\n%s", string, mengine->buffer);
  PetscFunctionReturn(0);
}

/*@C
    PetscMatlabEngineGetOutput - Gets a string buffer where the MATLAB output is
          printed

    Not Collective

    Input Parameter:
.   mengine - the MATLAB engine

    Output Parameter:
.   string - buffer where MATLAB output is printed

   Level: advanced

.seealso: `PetscMatlabEngineDestroy()`, `PetscMatlabEnginePut()`, `PetscMatlabEngineGet()`,
          `PetscMatlabEngineEvaluate()`, `PetscMatlabEngineCreate()`, `PetscMatlabEnginePrintOutput()`,
          `PETSC_MATLAB_ENGINE_()`, `PetscMatlabEnginePutArray()`, `PetscMatlabEngineGetArray()`, `PetscMatlabEngine`
@*/
PetscErrorCode PetscMatlabEngineGetOutput(PetscMatlabEngine mengine, char **string) {
  PetscFunctionBegin;
  PetscCheck(mengine, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "Null argument: probably PETSC_MATLAB_ENGINE_() failed");
  *string = mengine->buffer;
  PetscFunctionReturn(0);
}

/*@C
    PetscMatlabEnginePrintOutput - prints the output from MATLAB to an ASCII file

    Collective on mengine

    Input Parameters:
+    mengine - the MATLAB engine
-    fd - the file

   Level: advanced

.seealso: `PetscMatlabEngineDestroy()`, `PetscMatlabEnginePut()`, `PetscMatlabEngineGet()`,
          `PetscMatlabEngineEvaluate()`, `PetscMatlabEngineGetOutput()`, `PetscMatlabEngineCreate()`,
          `PETSC_MATLAB_ENGINE_()`, `PetscMatlabEnginePutArray()`, `PetscMatlabEngineGetArray()`, `PetscMatlabEngine`
@*/
PetscErrorCode PetscMatlabEnginePrintOutput(PetscMatlabEngine mengine, FILE *fd) {
  PetscMPIInt rank;

  PetscFunctionBegin;
  PetscCheck(mengine, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "Null argument: probably PETSC_MATLAB_ENGINE_() failed");
  PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mengine), &rank));
  PetscCall(PetscSynchronizedFPrintf(PetscObjectComm((PetscObject)mengine), fd, "[%d]%s", rank, mengine->buffer));
  PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject)mengine), fd));
  PetscFunctionReturn(0);
}

/*@
    PetscMatlabEnginePut - Puts a Petsc object, such as a `Mat` or `Vec` into the MATLAB space. For parallel objects,
      each processor's part is put in a separate  MATLAB process.

    Collective on mengine

    Input Parameters:
+    mengine - the MATLAB engine
-    object - the PETSc object, for example Vec

   Level: advanced

   Note:
   `Mat`s transferred between PETSc and MATLAB and vis versa are transposed in the other space
   (this is because MATLAB uses compressed column format and PETSc uses compressed row format)

.seealso: `PetscMatlabEngineDestroy()`, `PetscMatlabEngineCreate()`, `PetscMatlabEngineGet()`,
          `PetscMatlabEngineEvaluate()`, `PetscMatlabEngineGetOutput()`, `PetscMatlabEnginePrintOutput()`,
          `PETSC_MATLAB_ENGINE_()`, `PetscMatlabEnginePutArray()`, `PetscMatlabEngineGetArray()`, `PetscMatlabEngine`
@*/
PetscErrorCode PetscMatlabEnginePut(PetscMatlabEngine mengine, PetscObject obj) {
  PetscErrorCode (*put)(PetscObject, void *);

  PetscFunctionBegin;
  PetscCheck(mengine, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "Null argument: probably PETSC_MATLAB_ENGINE_() failed");
  PetscCall(PetscObjectQueryFunction(obj, "PetscMatlabEnginePut_C", &put));
  PetscCheck(put, PETSC_COMM_SELF, PETSC_ERR_SUP, "Object %s cannot be put into MATLAB engine", obj->class_name);
  PetscCall(PetscInfo(0, "Putting MATLAB object\n"));
  PetscCall((*put)(obj, mengine->ep));
  PetscCall(PetscInfo(0, "Put MATLAB object: %s\n", obj->name));
  PetscFunctionReturn(0);
}

/*@
    PetscMatlabEngineGet - Gets a variable from MATLAB into a PETSc object.

    Collective on mengine

    Input Parameters:
+    mengine - the MATLAB engine
-    object - the PETSc object, for example a `Vec`

   Level: advanced

   Note:
   `Mat`s transferred between PETSc and MATLAB and vis versa are transposed in the other space
   (this is because MATLAB uses compressed column format and PETSc uses compressed row format)

.seealso: `PetscMatlabEngineDestroy()`, `PetscMatlabEnginePut()`, `PetscMatlabEngineCreate()`,
          `PetscMatlabEngineEvaluate()`, `PetscMatlabEngineGetOutput()`, `PetscMatlabEnginePrintOutput()`,
          `PETSC_MATLAB_ENGINE_()`, `PetscMatlabEnginePutArray()`, `PetscMatlabEngineGetArray()`, `PetscMatlabEngine`
@*/
PetscErrorCode PetscMatlabEngineGet(PetscMatlabEngine mengine, PetscObject obj) {
  PetscErrorCode (*get)(PetscObject, void *);

  PetscFunctionBegin;
  PetscCheck(mengine, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "Null argument: probably PETSC_MATLAB_ENGINE_() failed");
  PetscCheck(obj->name, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot get object that has no name");
  PetscCall(PetscObjectQueryFunction(obj, "PetscMatlabEngineGet_C", &get));
  PetscCheck(get, PETSC_COMM_SELF, PETSC_ERR_SUP, "Object %s cannot be gotten from MATLAB engine", obj->class_name);
  PetscCall(PetscInfo(0, "Getting MATLAB object\n"));
  PetscCall((*get)(obj, mengine->ep));
  PetscCall(PetscInfo(0, "Got MATLAB object: %s\n", obj->name));
  PetscFunctionReturn(0);
}

/*
    The variable Petsc_Matlab_Engine_keyval is used to indicate an MPI attribute that
  is attached to a communicator, in this case the attribute is a PetscMatlabEngine
*/
static PetscMPIInt Petsc_Matlab_Engine_keyval = MPI_KEYVAL_INVALID;

/*@C
   PETSC_MATLAB_ENGINE_ - Creates a MATLAB engine on each process in a communicator.

   Not Collective

   Input Parameter:
.  comm - the MPI communicator to share the engine

   Options Database Key:
.  -matlab_engine_host - hostname on which to run MATLAB, one must be able to ssh to this host

   Level: developer

   Note:
   Unlike almost all other PETSc routines, this does not return
   an error code. Usually used in the form
$      PetscMatlabEngineYYY(XXX object,PETSC_MATLAB_ENGINE_(comm));

.seealso: `PetscMatlabEngineDestroy()`, `PetscMatlabEnginePut()`, `PetscMatlabEngineGet()`,
          `PetscMatlabEngineEvaluate()`, `PetscMatlabEngineGetOutput()`, `PetscMatlabEnginePrintOutput()`,
          `PetscMatlabEngineCreate()`, `PetscMatlabEnginePutArray()`, `PetscMatlabEngineGetArray()`, `PetscMatlabEngine`,
          `PETSC_MATLAB_ENGINE_WORLD`, `PETSC_MATLAB_ENGINE_SELF`
@*/
PetscMatlabEngine PETSC_MATLAB_ENGINE_(MPI_Comm comm) {
  PetscErrorCode    ierr;
  PetscBool         flg;
  PetscMatlabEngine mengine;

  PetscFunctionBegin;
  if (Petsc_Matlab_Engine_keyval == MPI_KEYVAL_INVALID) {
    ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, MPI_COMM_NULL_DELETE_FN, &Petsc_Matlab_Engine_keyval, 0);
    if (ierr) {
      PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_MATLAB_ENGINE_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_INITIAL, " ");
      PetscFunctionReturn(NULL);
    }
  }
  ierr = MPI_Comm_get_attr(comm, Petsc_Matlab_Engine_keyval, (void **)&mengine, (int *)&flg);
  if (ierr) {
    PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_MATLAB_ENGINE_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_INITIAL, " ");
    PetscFunctionReturn(NULL);
  }
  if (!flg) { /* viewer not yet created */
    ierr = PetscMatlabEngineCreate(comm, NULL, &mengine);
    if (ierr) {
      PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_MATLAB_ENGINE_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " ");
      PetscFunctionReturn(NULL);
    }
    ierr = PetscObjectRegisterDestroy((PetscObject)mengine);
    if (ierr) {
      PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_MATLAB_ENGINE_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " ");
      PetscFunctionReturn(NULL);
    }
    ierr = MPI_Comm_set_attr(comm, Petsc_Matlab_Engine_keyval, mengine);
    if (ierr) {
      PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_MATLAB_ENGINE_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_INITIAL, " ");
      PetscFunctionReturn(NULL);
    }
  }
  PetscFunctionReturn(mengine);
}

/*@C
    PetscMatlabEnginePutArray - Puts an array into the MATLAB space, treating it as a Fortran style (column major ordering) array. For parallel objects,
      each processors part is put in a separate  MATLAB process.

    Collective on mengine

    Input Parameters:
+    mengine - the MATLAB engine
.    m,n - the dimensions of the array
.    array - the array (represented in one dimension)
-    name - the name of the array

   Level: advanced

.seealso: `PetscMatlabEngineDestroy()`, `PetscMatlabEngineCreate()`, `PetscMatlabEngineGet()`,
          `PetscMatlabEngineEvaluate()`, `PetscMatlabEngineGetOutput()`, `PetscMatlabEnginePrintOutput()`,
          `PETSC_MATLAB_ENGINE_()`, `PetscMatlabEnginePut()`, `PetscMatlabEngineGetArray()`, `PetscMatlabEngine`
@*/
PetscErrorCode PetscMatlabEnginePutArray(PetscMatlabEngine mengine, int m, int n, const PetscScalar *array, const char name[]) {
  mxArray *mat;

  PetscFunctionBegin;
  PetscCheck(mengine, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "Null argument: probably PETSC_MATLAB_ENGINE_() failed");
  PetscCall(PetscInfo(0, "Putting MATLAB array %s\n", name));
#if !defined(PETSC_USE_COMPLEX)
  mat = mxCreateDoubleMatrix(m, n, mxREAL);
#else
  mat = mxCreateDoubleMatrix(m, n, mxCOMPLEX);
#endif
  PetscCall(PetscArraycpy(mxGetPr(mat), array, m * n));
  engPutVariable(mengine->ep, name, mat);

  PetscCall(PetscInfo(0, "Put MATLAB array %s\n", name));
  PetscFunctionReturn(0);
}

/*@C
    PetscMatlabEngineGetArray - Gets a variable from MATLAB into an array

    Not Collective

    Input Parameters:
+    mengine - the MATLAB engine
.    m,n - the dimensions of the array
.    array - the array (represented in one dimension)
-    name - the name of the array

   Level: advanced

.seealso: `PetscMatlabEngineDestroy()`, `PetscMatlabEnginePut()`, `PetscMatlabEngineCreate()`,
          `PetscMatlabEngineEvaluate()`, `PetscMatlabEngineGetOutput()`, `PetscMatlabEnginePrintOutput()`,
          `PETSC_MATLAB_ENGINE_()`, `PetscMatlabEnginePutArray()`, `PetscMatlabEngineGet()`, `PetscMatlabEngine`
@*/
PetscErrorCode PetscMatlabEngineGetArray(PetscMatlabEngine mengine, int m, int n, PetscScalar *array, const char name[]) {
  mxArray *mat;

  PetscFunctionBegin;
  PetscCheck(mengine, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "Null argument: probably PETSC_MATLAB_ENGINE_() failed");
  PetscCall(PetscInfo(0, "Getting MATLAB array %s\n", name));
  mat = engGetVariable(mengine->ep, name);
  PetscCheck(mat, PETSC_COMM_SELF, PETSC_ERR_LIB, "Unable to get array %s from matlab", name);
  PetscCheck(mxGetM(mat) == (size_t)m, PETSC_COMM_SELF, PETSC_ERR_LIB, "Array %s in MATLAB first dimension %d does not match requested size %d", name, (int)mxGetM(mat), m);
  PetscCheck(mxGetN(mat) == (size_t)n, PETSC_COMM_SELF, PETSC_ERR_LIB, "Array %s in MATLAB second dimension %d does not match requested size %d", name, (int)mxGetN(mat), m);
  PetscCall(PetscArraycpy(array, mxGetPr(mat), m * n));
  PetscCall(PetscInfo(0, "Got MATLAB array %s\n", name));
  PetscFunctionReturn(0);
}