xref: /petsc/src/sys/classes/viewer/impls/cgns/cgnsv.c (revision 4c155f2832907eedb79560d62e55bc8b687c7ec6)
15f34f2dcSJed Brown #include <petsc/private/viewercgnsimpl.h> /*I "petscviewer.h" I*/
2472b9844SJames Wright #include <petsc/private/dmpleximpl.h>     /*I   "petscdmplex.h"   I*/
35f34f2dcSJed Brown #if defined(PETSC_HDF5_HAVE_PARALLEL)
45f34f2dcSJed Brown   #include <pcgnslib.h>
55f34f2dcSJed Brown #else
65f34f2dcSJed Brown   #include <cgnslib.h>
75f34f2dcSJed Brown #endif
8472b9844SJames Wright #include <cgns_io.h>
9472b9844SJames Wright #include <ctype.h>
105f34f2dcSJed Brown 
115582b114SJames Wright PetscLogEvent PETSC_VIEWER_CGNS_Open, PETSC_VIEWER_CGNS_Close, PETSC_VIEWER_CGNS_ReadMeta, PETSC_VIEWER_CGNS_WriteMeta, PETSC_VIEWER_CGNS_ReadData, PETSC_VIEWER_CGNS_WriteData;
125582b114SJames Wright 
135582b114SJames Wright PetscErrorCode PetscViewerCGNSRegisterLogEvents_Internal()
145582b114SJames Wright {
155582b114SJames Wright   static PetscBool is_initialized = PETSC_FALSE;
165582b114SJames Wright 
175582b114SJames Wright   PetscFunctionBeginUser;
185582b114SJames Wright   if (is_initialized) PetscFunctionReturn(PETSC_SUCCESS);
195582b114SJames Wright   PetscCall(PetscLogEventRegister("CGNSOpen", PETSC_VIEWER_CLASSID, &PETSC_VIEWER_CGNS_Open));
205582b114SJames Wright   PetscCall(PetscLogEventRegister("CGNSClose", PETSC_VIEWER_CLASSID, &PETSC_VIEWER_CGNS_Close));
215582b114SJames Wright   PetscCall(PetscLogEventRegister("CGNSReadMeta", PETSC_VIEWER_CLASSID, &PETSC_VIEWER_CGNS_ReadMeta));
225582b114SJames Wright   PetscCall(PetscLogEventRegister("CGNSReadData", PETSC_VIEWER_CLASSID, &PETSC_VIEWER_CGNS_ReadData));
235582b114SJames Wright   PetscCall(PetscLogEventRegister("CGNSWriteMeta", PETSC_VIEWER_CLASSID, &PETSC_VIEWER_CGNS_WriteMeta));
245582b114SJames Wright   PetscCall(PetscLogEventRegister("CGNSWriteData", PETSC_VIEWER_CLASSID, &PETSC_VIEWER_CGNS_WriteData));
255582b114SJames Wright   is_initialized = PETSC_TRUE;
265582b114SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
275582b114SJames Wright }
285582b114SJames Wright 
29d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscViewerSetFromOptions_CGNS(PetscViewer v, PetscOptionItems *PetscOptionsObject)
30d71ae5a4SJacob Faibussowitsch {
3125760affSJed Brown   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)v->data;
324d86920dSPierre Jolivet 
335f34f2dcSJed Brown   PetscFunctionBegin;
345f34f2dcSJed Brown   PetscOptionsHeadBegin(PetscOptionsObject, "CGNS Viewer Options");
35da0802e2SStefano Zampini   PetscCall(PetscOptionsInt("-viewer_cgns_batch_size", "Max number of steps to store in single file when using a template cgns:name-\%d.cgns", "", cgv->batch_size, &cgv->batch_size, NULL));
365f34f2dcSJed Brown   PetscOptionsHeadEnd();
373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
385f34f2dcSJed Brown }
395f34f2dcSJed Brown 
40d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscViewerView_CGNS(PetscViewer v, PetscViewer viewer)
41d71ae5a4SJacob Faibussowitsch {
425f34f2dcSJed Brown   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)v->data;
435f34f2dcSJed Brown 
445f34f2dcSJed Brown   PetscFunctionBegin;
4548a46eb9SPierre Jolivet   if (cgv->filename) PetscCall(PetscViewerASCIIPrintf(viewer, "Filename: %s\n", cgv->filename));
463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
475f34f2dcSJed Brown }
485f34f2dcSJed Brown 
49d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscViewerFileClose_CGNS(PetscViewer viewer)
50d71ae5a4SJacob Faibussowitsch {
515f34f2dcSJed Brown   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
525f34f2dcSJed Brown 
535f34f2dcSJed Brown   PetscFunctionBegin;
545f34f2dcSJed Brown   if (cgv->output_times) {
556497c311SBarry Smith     PetscCount size, width = 32, *steps;
565f34f2dcSJed Brown     char      *solnames;
575f34f2dcSJed Brown     PetscReal *times;
585f34f2dcSJed Brown     cgsize_t   num_times;
595f34f2dcSJed Brown     PetscCall(PetscSegBufferGetSize(cgv->output_times, &size));
605f34f2dcSJed Brown     PetscCall(PetscSegBufferExtractInPlace(cgv->output_times, &times));
615f34f2dcSJed Brown     num_times = size;
62*4c155f28SJames Wright     PetscCallCGNSWrite(cg_biter_write(cgv->file_num, cgv->base, "TimeIterValues", num_times), viewer, 0);
635f34f2dcSJed Brown     PetscCallCGNS(cg_goto(cgv->file_num, cgv->base, "BaseIterativeData_t", 1, NULL));
64*4c155f28SJames Wright     PetscCallCGNSWrite(cg_array_write("TimeValues", CGNS_ENUMV(RealDouble), 1, &num_times, times), viewer, 0);
655f34f2dcSJed Brown     PetscCall(PetscSegBufferDestroy(&cgv->output_times));
66*4c155f28SJames Wright     PetscCallCGNSWrite(cg_ziter_write(cgv->file_num, cgv->base, cgv->zone, "ZoneIterativeData"), viewer, 0);
675f34f2dcSJed Brown     PetscCallCGNS(cg_goto(cgv->file_num, cgv->base, "Zone_t", cgv->zone, "ZoneIterativeData_t", 1, NULL));
685f34f2dcSJed Brown     PetscCall(PetscMalloc(size * width + 1, &solnames));
699812b6beSJed Brown     PetscCall(PetscSegBufferExtractInPlace(cgv->output_steps, &steps));
706497c311SBarry Smith     for (PetscCount i = 0; i < size; i++) PetscCall(PetscSNPrintf(&solnames[i * width], width + 1, "FlowSolution%-20zu", (size_t)steps[i]));
719812b6beSJed Brown     PetscCall(PetscSegBufferDestroy(&cgv->output_steps));
725f34f2dcSJed Brown     cgsize_t shape[2] = {(cgsize_t)width, (cgsize_t)size};
73*4c155f28SJames Wright     PetscCallCGNSWrite(cg_array_write("FlowSolutionPointers", CGNS_ENUMV(Character), 2, shape, solnames), viewer, 0);
745f34f2dcSJed Brown     // The VTK reader looks for names like FlowSolution*Pointers.
756497c311SBarry Smith     for (PetscCount i = 0; i < size; i++) PetscCall(PetscSNPrintf(&solnames[i * width], width + 1, "%-32s", "CellInfo"));
76*4c155f28SJames Wright     PetscCallCGNSWrite(cg_array_write("FlowSolutionCellInfoPointers", CGNS_ENUMV(Character), 2, shape, solnames), viewer, 0);
775f34f2dcSJed Brown     PetscCall(PetscFree(solnames));
785f34f2dcSJed Brown 
79*4c155f28SJames Wright     PetscCallCGNSWrite(cg_simulation_type_write(cgv->file_num, cgv->base, CGNS_ENUMV(TimeAccurate)), viewer, 0);
805f34f2dcSJed Brown   }
815f34f2dcSJed Brown   PetscCall(PetscFree(cgv->filename));
825f34f2dcSJed Brown #if defined(PETSC_HDF5_HAVE_PARALLEL)
83*4c155f28SJames Wright   if (cgv->file_num) PetscCallCGNSClose(cgp_close(cgv->file_num), viewer, 0);
845f34f2dcSJed Brown #else
85*4c155f28SJames Wright   if (cgv->file_num) PetscCallCGNSClose(cg_close(cgv->file_num), viewer, 0);
865f34f2dcSJed Brown #endif
875f34f2dcSJed Brown   cgv->file_num = 0;
8825760affSJed Brown   PetscCall(PetscFree(cgv->node_l2g));
8925760affSJed Brown   PetscCall(PetscFree(cgv->nodal_field));
903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9125760affSJed Brown }
9225760affSJed Brown 
9325760affSJed Brown PetscErrorCode PetscViewerCGNSFileOpen_Internal(PetscViewer viewer, PetscInt sequence_number)
9425760affSJed Brown {
9525760affSJed Brown   PetscViewer_CGNS *cgv          = (PetscViewer_CGNS *)viewer->data;
96ec76947aSJames Wright   int               cg_file_mode = -1;
974d86920dSPierre Jolivet 
9825760affSJed Brown   PetscFunctionBegin;
9925760affSJed Brown   PetscCheck((cgv->filename == NULL) ^ (sequence_number < 0), PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Expect either a template filename or non-negative sequence number");
10025760affSJed Brown   if (!cgv->filename) {
10125760affSJed Brown     char filename_numbered[PETSC_MAX_PATH_LEN];
10225760affSJed Brown     // Cast sequence_number so %d can be used also when PetscInt is 64-bit. We could upgrade the format string if users
10325760affSJed Brown     // run more than 2B time steps.
10425760affSJed Brown     PetscCall(PetscSNPrintf(filename_numbered, sizeof filename_numbered, cgv->filename_template, (int)sequence_number));
10525760affSJed Brown     PetscCall(PetscStrallocpy(filename_numbered, &cgv->filename));
10625760affSJed Brown   }
10725760affSJed Brown   switch (cgv->btype) {
10825760affSJed Brown   case FILE_MODE_READ:
109ec76947aSJames Wright     cg_file_mode = CG_MODE_READ;
11025760affSJed Brown     break;
11125760affSJed Brown   case FILE_MODE_WRITE:
112ec76947aSJames Wright     cg_file_mode = CG_MODE_WRITE;
11325760affSJed Brown     break;
11425760affSJed Brown   case FILE_MODE_UNDEFINED:
11525760affSJed Brown     SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_ORDER, "Must call PetscViewerFileSetMode() before PetscViewerFileSetName()");
11625760affSJed Brown   default:
11725760affSJed Brown     SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Unsupported file mode %s", PetscFileModes[cgv->btype]);
11825760affSJed Brown   }
119ec76947aSJames Wright #if defined(PETSC_HDF5_HAVE_PARALLEL)
120ec76947aSJames Wright   PetscCallCGNS(cgp_mpi_comm(PetscObjectComm((PetscObject)viewer)));
121*4c155f28SJames Wright   PetscCallCGNSOpen(cgp_open(cgv->filename, cg_file_mode, &cgv->file_num), viewer, 0);
122ec76947aSJames Wright #else
123*4c155f28SJames Wright   PetscCallCGNSOpen(cg_open(filename, cg_file_mode, &cgv->file_num), viewer, 0);
124ec76947aSJames Wright #endif
1253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12625760affSJed Brown }
12725760affSJed Brown 
12825760affSJed Brown PetscErrorCode PetscViewerCGNSCheckBatch_Internal(PetscViewer viewer)
12925760affSJed Brown {
13025760affSJed Brown   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
1316497c311SBarry Smith   PetscCount        num_steps;
13225760affSJed Brown 
13325760affSJed Brown   PetscFunctionBegin;
1343ba16761SJacob Faibussowitsch   if (!cgv->filename_template) PetscFunctionReturn(PETSC_SUCCESS); // Batches are closed when viewer is destroyed
13525760affSJed Brown   PetscCall(PetscSegBufferGetSize(cgv->output_times, &num_steps));
1366497c311SBarry Smith   if (num_steps >= (PetscCount)cgv->batch_size) PetscCall(PetscViewerFileClose_CGNS(viewer));
1373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1385f34f2dcSJed Brown }
1395f34f2dcSJed Brown 
140d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscViewerDestroy_CGNS(PetscViewer viewer)
141d71ae5a4SJacob Faibussowitsch {
1425f34f2dcSJed Brown   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
1435f34f2dcSJed Brown 
1445f34f2dcSJed Brown   PetscFunctionBegin;
1455f34f2dcSJed Brown   PetscCall(PetscViewerFileClose_CGNS(viewer));
146472b9844SJames Wright   PetscCall(PetscFree(cgv->solution_name));
1475f34f2dcSJed Brown   PetscCall(PetscFree(cgv));
1485f34f2dcSJed Brown   PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileSetName_C", NULL));
1495f34f2dcSJed Brown   PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileGetName_C", NULL));
1505f34f2dcSJed Brown   PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileSetMode_C", NULL));
1515f34f2dcSJed Brown   PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileGetMode_C", NULL));
1523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1535f34f2dcSJed Brown }
1545f34f2dcSJed Brown 
155d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscViewerFileSetMode_CGNS(PetscViewer viewer, PetscFileMode type)
156d71ae5a4SJacob Faibussowitsch {
1575f34f2dcSJed Brown   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
1585f34f2dcSJed Brown 
1595f34f2dcSJed Brown   PetscFunctionBegin;
1605f34f2dcSJed Brown   cgv->btype = type;
1613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1625f34f2dcSJed Brown }
1635f34f2dcSJed Brown 
164d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscViewerFileGetMode_CGNS(PetscViewer viewer, PetscFileMode *type)
165d71ae5a4SJacob Faibussowitsch {
1665f34f2dcSJed Brown   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
1675f34f2dcSJed Brown 
1685f34f2dcSJed Brown   PetscFunctionBegin;
1695f34f2dcSJed Brown   *type = cgv->btype;
1703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1715f34f2dcSJed Brown }
1725f34f2dcSJed Brown 
173d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscViewerFileSetName_CGNS(PetscViewer viewer, const char *filename)
174d71ae5a4SJacob Faibussowitsch {
1755f34f2dcSJed Brown   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
17625760affSJed Brown   char             *has_pattern;
1775f34f2dcSJed Brown 
1785f34f2dcSJed Brown   PetscFunctionBegin;
1795582b114SJames Wright #if defined(PETSC_HDF5_HAVE_PARALLEL)
180*4c155f28SJames Wright   if (cgv->file_num) PetscCallCGNSClose(cgp_close(cgv->file_num), viewer, 0);
1815582b114SJames Wright #else
182*4c155f28SJames Wright   if (cgv->file_num) PetscCallCGNSClose(cg_close(cgv->file_num), viewer, 0);
1835582b114SJames Wright #endif
1845f34f2dcSJed Brown   PetscCall(PetscFree(cgv->filename));
18525760affSJed Brown   PetscCall(PetscFree(cgv->filename_template));
18625760affSJed Brown   PetscCall(PetscStrchr(filename, '%', &has_pattern));
18725760affSJed Brown   if (has_pattern) {
18825760affSJed Brown     PetscCall(PetscStrallocpy(filename, &cgv->filename_template));
18925760affSJed Brown     // Templated file names open lazily, once we know DMGetOutputSequenceNumber()
19025760affSJed Brown   } else {
1915f34f2dcSJed Brown     PetscCall(PetscStrallocpy(filename, &cgv->filename));
19225760affSJed Brown     PetscCall(PetscViewerCGNSFileOpen_Internal(viewer, -1));
1935f34f2dcSJed Brown   }
1943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1955f34f2dcSJed Brown }
1965f34f2dcSJed Brown 
197d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscViewerFileGetName_CGNS(PetscViewer viewer, const char **filename)
198d71ae5a4SJacob Faibussowitsch {
1995f34f2dcSJed Brown   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
2005f34f2dcSJed Brown 
2015f34f2dcSJed Brown   PetscFunctionBegin;
2025f34f2dcSJed Brown   *filename = cgv->filename;
2033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2045f34f2dcSJed Brown }
2055f34f2dcSJed Brown 
2065f34f2dcSJed Brown /*MC
2075f34f2dcSJed Brown    PETSCVIEWERCGNS - A viewer for CGNS files
2085f34f2dcSJed Brown 
2095f34f2dcSJed Brown   Level: beginner
210811af0c4SBarry Smith 
2113f423023SBarry Smith   Options Database Key:
2123f423023SBarry Smith . -viewer_cgns_batch_size SIZE - set max number of output sequence times to write per batch
21325760affSJed Brown 
2143f423023SBarry Smith   Note:
21525760affSJed Brown   If the filename contains an integer format character, the CGNS viewer will created a batched output sequence. For
21625760affSJed Brown   example, one could use `-ts_monitor_solution cgns:flow-%d.cgns`. This is desirable if one wants to limit file sizes or
21725760affSJed Brown   if the job might crash/be killed by a resource manager before exiting cleanly.
21825760affSJed Brown 
21925760affSJed Brown .seealso: [](sec_viewers), `PetscViewer`, `PetscViewerCreate()`, `VecView()`, `DMView()`, `PetscViewerFileSetName()`, `PetscViewerFileSetMode()`, `TSSetFromOptions()`
2205f34f2dcSJed Brown M*/
22114640894SJames Wright PetscErrorCode PetscViewerCreate_CGNS(PetscViewer v)
222d71ae5a4SJacob Faibussowitsch {
2235f34f2dcSJed Brown   PetscViewer_CGNS *cgv;
2245f34f2dcSJed Brown 
2255f34f2dcSJed Brown   PetscFunctionBegin;
2265582b114SJames Wright   PetscCall(PetscViewerCGNSRegisterLogEvents_Internal());
2274dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&cgv));
2285f34f2dcSJed Brown 
2295f34f2dcSJed Brown   v->data                = cgv;
2305f34f2dcSJed Brown   v->ops->destroy        = PetscViewerDestroy_CGNS;
2315f34f2dcSJed Brown   v->ops->setfromoptions = PetscViewerSetFromOptions_CGNS;
2325f34f2dcSJed Brown   v->ops->view           = PetscViewerView_CGNS;
2335f34f2dcSJed Brown   cgv->btype             = FILE_MODE_UNDEFINED;
2345f34f2dcSJed Brown   cgv->filename          = NULL;
23525760affSJed Brown   cgv->batch_size        = 20;
236472b9844SJames Wright   cgv->solution_index    = -1; // Default to use the "last" solution
237472b9844SJames Wright   cgv->base              = 1;
238472b9844SJames Wright   cgv->zone              = 1;
2395f34f2dcSJed Brown 
2405f34f2dcSJed Brown   PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetName_C", PetscViewerFileSetName_CGNS));
2415f34f2dcSJed Brown   PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetName_C", PetscViewerFileGetName_CGNS));
2425f34f2dcSJed Brown   PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetMode_C", PetscViewerFileSetMode_CGNS));
2435f34f2dcSJed Brown   PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetMode_C", PetscViewerFileGetMode_CGNS));
2443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2455f34f2dcSJed Brown }
246472b9844SJames Wright 
247472b9844SJames Wright // Find DataArray_t node under the current node (determined by `cg_goto` and friends) that matches `name`
248472b9844SJames Wright // Return the index of that array and (optionally) other data about the array
249472b9844SJames Wright static inline PetscErrorCode CGNS_Find_Array(MPI_Comm comm, const char name[], int *A_index, CGNS_ENUMT(DataType_t) * data_type, int *dim, cgsize_t size[])
250472b9844SJames Wright {
251472b9844SJames Wright   int  narrays; // number of arrays under the current node
252472b9844SJames Wright   char array_name[CGIO_MAX_NAME_LENGTH + 1];
253472b9844SJames Wright   CGNS_ENUMT(DataType_t) data_type_local;
254472b9844SJames Wright   int       _dim;
255472b9844SJames Wright   cgsize_t  _size[12];
256472b9844SJames Wright   PetscBool matches_name = PETSC_FALSE;
257472b9844SJames Wright 
258472b9844SJames Wright   PetscFunctionBeginUser;
259*4c155f28SJames Wright   PetscCallCGNSRead(cg_narrays(&narrays), 0, 0);
260472b9844SJames Wright   for (int i = 1; i <= narrays; i++) {
261*4c155f28SJames Wright     PetscCallCGNSRead(cg_array_info(i, array_name, &data_type_local, &_dim, _size), 0, 0);
262472b9844SJames Wright     PetscCall(PetscStrcmp(name, array_name, &matches_name));
263472b9844SJames Wright     if (matches_name) {
264472b9844SJames Wright       *A_index = i;
265472b9844SJames Wright       if (data_type) *data_type = data_type_local;
266472b9844SJames Wright       if (dim) *dim = _dim;
267472b9844SJames Wright       if (size) PetscArraycpy(size, _size, _dim);
268472b9844SJames Wright       PetscFunctionReturn(PETSC_SUCCESS);
269472b9844SJames Wright     }
270472b9844SJames Wright   }
271472b9844SJames Wright   SETERRQ(comm, PETSC_ERR_SUP, "Cannot find %s array under current CGNS node", name);
272472b9844SJames Wright }
273472b9844SJames Wright 
274472b9844SJames Wright /*@
275472b9844SJames Wright   PetscViewerCGNSOpen - Opens a file for CGNS input/output.
276472b9844SJames Wright 
277472b9844SJames Wright   Collective
278472b9844SJames Wright 
279472b9844SJames Wright   Input Parameters:
280472b9844SJames Wright + comm - MPI communicator
281472b9844SJames Wright . name - name of file
282472b9844SJames Wright - type - type of file
283472b9844SJames Wright .vb
284472b9844SJames Wright     FILE_MODE_WRITE - create new file for binary output
285472b9844SJames Wright     FILE_MODE_READ - open existing file for binary input
286472b9844SJames Wright     FILE_MODE_APPEND - open existing file for binary output
287472b9844SJames Wright .ve
288472b9844SJames Wright 
289472b9844SJames Wright   Output Parameter:
290472b9844SJames Wright . viewer - `PETSCVIEWERCGNS` `PetscViewer` for CGNS input/output to use with the specified file
291472b9844SJames Wright 
292472b9844SJames Wright   Level: beginner
293472b9844SJames Wright 
294472b9844SJames Wright .seealso: `PETSCVIEWERCGNS`, `PetscViewer`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`,
295472b9844SJames Wright           `DMLoad()`, `PetscFileMode`, `PetscViewerSetType()`, `PetscViewerFileSetMode()`, `PetscViewerFileSetName()`
296472b9844SJames Wright @*/
297472b9844SJames Wright PetscErrorCode PetscViewerCGNSOpen(MPI_Comm comm, const char name[], PetscFileMode type, PetscViewer *viewer)
298472b9844SJames Wright {
299472b9844SJames Wright   PetscFunctionBegin;
30014640894SJames Wright   PetscAssertPointer(name, 2);
30114640894SJames Wright   PetscAssertPointer(viewer, 4);
302472b9844SJames Wright   PetscCall(PetscViewerCreate(comm, viewer));
303472b9844SJames Wright   PetscCall(PetscViewerSetType(*viewer, PETSCVIEWERCGNS));
304472b9844SJames Wright   PetscCall(PetscViewerFileSetMode(*viewer, type));
305472b9844SJames Wright   PetscCall(PetscViewerFileSetName(*viewer, name));
306472b9844SJames Wright   PetscCall(PetscViewerSetFromOptions(*viewer));
307472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
308472b9844SJames Wright }
309472b9844SJames Wright 
310472b9844SJames Wright /*@
311472b9844SJames Wright   PetscViewerCGNSSetSolutionIndex - Set index of solution
312472b9844SJames Wright 
313472b9844SJames Wright   Not Collective
314472b9844SJames Wright 
315472b9844SJames Wright   Input Parameters:
316472b9844SJames Wright + viewer      - `PETSCVIEWERCGNS` `PetscViewer` for CGNS input/output to use with the specified file
317472b9844SJames Wright - solution_id - Index of the solution id, or `-1` for the last solution on the file
318472b9844SJames Wright 
319472b9844SJames Wright   Level: intermediate
320472b9844SJames Wright 
321472b9844SJames Wright   Notes:
322472b9844SJames Wright   By default, `solution_id` is set to `-1` to mean the last solution available in the file.
323472b9844SJames Wright   If the file contains a FlowSolutionPointers node, then that array is indexed to determine which FlowSolution_t node to read from.
324472b9844SJames Wright   Otherwise, `solution_id` indexes the total available FlowSolution_t nodes in the file.
325472b9844SJames Wright 
326472b9844SJames Wright   This solution index is used by `VecLoad()` to determine which solution to load from the file
327472b9844SJames Wright 
328472b9844SJames Wright .seealso: `PETSCVIEWERCGNS`, `PetscViewerCGNSGetSolutionIndex()`, `PetscViewerCGNSGetSolutionInfo()`
329472b9844SJames Wright 
330472b9844SJames Wright @*/
331472b9844SJames Wright PetscErrorCode PetscViewerCGNSSetSolutionIndex(PetscViewer viewer, PetscInt solution_id)
332472b9844SJames Wright {
333472b9844SJames Wright   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
334472b9844SJames Wright 
335472b9844SJames Wright   PetscFunctionBeginUser;
33614640894SJames Wright   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1);
33714640894SJames Wright   PetscValidLogicalCollectiveInt(viewer, solution_id, 2);
338472b9844SJames Wright   PetscCheck((solution_id != 0) && (solution_id > -2), PetscObjectComm((PetscObject)viewer), PETSC_ERR_USER_INPUT, "Solution index must be either -1 or greater than 0, not %" PetscInt_FMT, solution_id);
339472b9844SJames Wright   cgv->solution_index      = solution_id;
340472b9844SJames Wright   cgv->solution_file_index = 0; // Reset sol_index when solution_id changes (0 is invalid)
341472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
342472b9844SJames Wright }
343472b9844SJames Wright 
344472b9844SJames Wright /*@
345472b9844SJames Wright   PetscViewerCGNSGetSolutionIndex - Get index of solution
346472b9844SJames Wright 
347472b9844SJames Wright   Not Collective
348472b9844SJames Wright 
349472b9844SJames Wright   Input Parameter:
350472b9844SJames Wright . viewer - `PETSCVIEWERCGNS` `PetscViewer` for CGNS input/output to use with the specified file
351472b9844SJames Wright 
352472b9844SJames Wright   Output Parameter:
353472b9844SJames Wright . solution_id - Index of the solution id
354472b9844SJames Wright 
355472b9844SJames Wright   Level: intermediate
356472b9844SJames Wright 
357472b9844SJames Wright   Notes:
358472b9844SJames Wright   By default, solution_id is set to `-1` to mean the last solution available in the file
359472b9844SJames Wright 
360472b9844SJames Wright .seealso: `PETSCVIEWERCGNS`, `PetscViewerCGNSSetSolutionIndex()`, `PetscViewerCGNSGetSolutionInfo()`
361472b9844SJames Wright 
362472b9844SJames Wright @*/
363472b9844SJames Wright PetscErrorCode PetscViewerCGNSGetSolutionIndex(PetscViewer viewer, PetscInt *solution_id)
364472b9844SJames Wright {
365472b9844SJames Wright   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
366472b9844SJames Wright 
367472b9844SJames Wright   PetscFunctionBeginUser;
36814640894SJames Wright   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1);
36914640894SJames Wright   PetscAssertPointer(solution_id, 2);
370472b9844SJames Wright   *solution_id = cgv->solution_index;
371472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
372472b9844SJames Wright }
373472b9844SJames Wright 
374472b9844SJames Wright // Gets the index for the solution in this CGNS file
375472b9844SJames Wright PetscErrorCode PetscViewerCGNSGetSolutionFileIndex_Internal(PetscViewer viewer, int *sol_index)
376472b9844SJames Wright {
377472b9844SJames Wright   PetscViewer_CGNS *cgv  = (PetscViewer_CGNS *)viewer->data;
378472b9844SJames Wright   MPI_Comm          comm = PetscObjectComm((PetscObject)viewer);
379472b9844SJames Wright   int               nsols, cgns_ier;
380472b9844SJames Wright   char              buffer[CGIO_MAX_NAME_LENGTH + 1];
381472b9844SJames Wright   CGNS_ENUMT(GridLocation_t) gridloc; // Throwaway
382472b9844SJames Wright 
383472b9844SJames Wright   PetscFunctionBeginUser;
384472b9844SJames Wright   if (cgv->solution_file_index > 0) {
385472b9844SJames Wright     *sol_index = cgv->solution_file_index;
386472b9844SJames Wright     PetscFunctionReturn(PETSC_SUCCESS);
387472b9844SJames Wright   }
388472b9844SJames Wright 
389*4c155f28SJames Wright   PetscCallCGNSRead(cg_nsols(cgv->file_num, cgv->base, cgv->zone, &nsols), viewer, 0);
390472b9844SJames Wright   cgns_ier = cg_goto(cgv->file_num, cgv->base, "Zone_t", cgv->zone, "ZoneIterativeData_t", 1, "FlowSolutionPointers", 0, NULL);
391472b9844SJames Wright   if (cgns_ier == CG_NODE_NOT_FOUND) {
392472b9844SJames Wright     // If FlowSolutionPointers does not exist, then just index off of nsols (which can include non-solution data)
393472b9844SJames Wright     PetscCheck(cgv->solution_index == -1 || cgv->solution_index <= nsols, comm, PETSC_ERR_ARG_OUTOFRANGE, "CGNS Solution index (%" PetscInt_FMT ") not in [1, %d]", cgv->solution_index, nsols);
394472b9844SJames Wright 
395472b9844SJames Wright     cgv->solution_file_index = cgv->solution_index == -1 ? nsols : cgv->solution_index;
396472b9844SJames Wright   } else {
397472b9844SJames Wright     // If FlowSolutionPointers exists, then solution_id should index that array of FlowSolutions
398472b9844SJames Wright     char     *pointer_id_name;
399472b9844SJames Wright     PetscBool matches_name = PETSC_FALSE;
400472b9844SJames Wright     int       sol_id;
401472b9844SJames Wright 
402472b9844SJames Wright     PetscCheck(cgns_ier == CG_OK, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS error %d %s", cgns_ier, cg_get_error());
403472b9844SJames Wright     cgns_ier = cg_goto(cgv->file_num, cgv->base, "Zone_t", cgv->zone, "ZoneIterativeData_t", 1, NULL);
404472b9844SJames Wright 
405472b9844SJames Wright     { // Get FlowSolutionPointer name corresponding to solution_id
406472b9844SJames Wright       cgsize_t size[12];
407472b9844SJames Wright       int      dim, A_index, pointer_id;
408472b9844SJames Wright       char    *pointer_names, *pointer_id_name_ref;
409472b9844SJames Wright 
410472b9844SJames Wright       PetscCall(CGNS_Find_Array(comm, "FlowSolutionPointers", &A_index, NULL, &dim, size));
411472b9844SJames Wright       PetscCheck(cgv->solution_index == -1 || cgv->solution_index <= size[1], comm, PETSC_ERR_ARG_OUTOFRANGE, "CGNS Solution index (%" PetscInt_FMT ") not in range of FlowSolutionPointers [1, %" PRIdCGSIZE "]", cgv->solution_index, size[1]);
412472b9844SJames Wright       PetscCall(PetscCalloc1(size[0] * size[1] + 1, &pointer_names)); // Need the +1 for (possibly) setting \0 for the last pointer name if it's full
413*4c155f28SJames Wright       PetscCallCGNSRead(cg_array_read_as(1, CGNS_ENUMV(Character), pointer_names), viewer, 0);
414472b9844SJames Wright       pointer_id          = cgv->solution_index == -1 ? size[1] : cgv->solution_index;
415472b9844SJames Wright       pointer_id_name_ref = &pointer_names[size[0] * (pointer_id - 1)];
416472b9844SJames Wright       { // Set last non-whitespace character of the pointer name to \0 (CGNS pads with spaces)
417472b9844SJames Wright         int str_idx;
418472b9844SJames Wright         for (str_idx = size[0] - 1; str_idx > 0; str_idx--) {
419472b9844SJames Wright           if (!isspace((unsigned char)pointer_id_name_ref[str_idx])) break;
420472b9844SJames Wright         }
421472b9844SJames Wright         pointer_id_name_ref[str_idx + 1] = '\0';
422472b9844SJames Wright       }
423472b9844SJames Wright       PetscCall(PetscStrallocpy(pointer_id_name_ref, &pointer_id_name));
424472b9844SJames Wright       PetscCall(PetscFree(pointer_names));
425472b9844SJames Wright     }
426472b9844SJames Wright 
427472b9844SJames Wright     // Find FlowSolution_t node that matches pointer_id_name
428472b9844SJames Wright     for (sol_id = 1; sol_id <= nsols; sol_id++) {
429*4c155f28SJames Wright       PetscCallCGNSRead(cg_sol_info(cgv->file_num, cgv->base, cgv->zone, sol_id, buffer, &gridloc), viewer, 0);
430472b9844SJames Wright       PetscCall(PetscStrcmp(pointer_id_name, buffer, &matches_name));
431472b9844SJames Wright       if (matches_name) break;
432472b9844SJames Wright     }
433472b9844SJames Wright     PetscCheck(matches_name, comm, PETSC_ERR_LIB, "Cannot find FlowSolution_t node %s in file", pointer_id_name);
434472b9844SJames Wright     cgv->solution_file_index = sol_id;
435472b9844SJames Wright     PetscCall(PetscFree(pointer_id_name));
436472b9844SJames Wright   }
437472b9844SJames Wright 
438472b9844SJames Wright   *sol_index = cgv->solution_file_index;
439472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
440472b9844SJames Wright }
441472b9844SJames Wright 
442472b9844SJames Wright /*@
443472b9844SJames Wright   PetscViewerCGNSGetSolutionTime - Gets the solution time for the FlowSolution of the viewer
444472b9844SJames Wright 
445472b9844SJames Wright   Collective
446472b9844SJames Wright 
447472b9844SJames Wright   Input Parameter:
448472b9844SJames Wright . viewer - `PETSCVIEWERCGNS` `PetscViewer` for CGNS input/output to use with the specified file
449472b9844SJames Wright 
4507dcfde4dSJose E. Roman   Output Parameters:
451472b9844SJames Wright + time - Solution time of the FlowSolution_t node
452472b9844SJames Wright - set  - Whether the time data is in the file
453472b9844SJames Wright 
454472b9844SJames Wright   Level: intermediate
455472b9844SJames Wright 
456472b9844SJames Wright   Notes:
457472b9844SJames Wright   Reads data from a DataArray named `TimeValues` under a `BaseIterativeData_t` node
458472b9844SJames Wright 
459472b9844SJames Wright .seealso: `PETSCVIEWERCGNS`, `PetscViewer`, `PetscViewerCGNSSetSolutionIndex()`, `PetscViewerCGNSGetSolutionIndex()`, `PetscViewerCGNSGetSolutionName()`
460472b9844SJames Wright @*/
461472b9844SJames Wright PetscErrorCode PetscViewerCGNSGetSolutionTime(PetscViewer viewer, PetscReal *time, PetscBool *set)
462472b9844SJames Wright {
463472b9844SJames Wright   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
464472b9844SJames Wright   int               cgns_ier, A_index = 0;
465472b9844SJames Wright   PetscReal        *times;
466472b9844SJames Wright   cgsize_t          size[12];
467472b9844SJames Wright 
468472b9844SJames Wright   PetscFunctionBeginUser;
46914640894SJames Wright   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1);
47014640894SJames Wright   PetscAssertPointer(time, 2);
47114640894SJames Wright   PetscAssertPointer(set, 3);
472472b9844SJames Wright   cgns_ier = cg_goto(cgv->file_num, cgv->base, "BaseIterativeData_t", 1, NULL);
473472b9844SJames Wright   if (cgns_ier == CG_NODE_NOT_FOUND) {
474472b9844SJames Wright     *set = PETSC_FALSE;
475472b9844SJames Wright     PetscFunctionReturn(PETSC_SUCCESS);
476472b9844SJames Wright   } else PetscCallCGNS(cgns_ier);
477472b9844SJames Wright   PetscCall(CGNS_Find_Array(PetscObjectComm((PetscObject)viewer), "TimeValues", &A_index, NULL, NULL, size));
478472b9844SJames Wright   PetscCall(PetscMalloc1(size[0], &times));
479*4c155f28SJames Wright   PetscCallCGNSRead(cg_array_read_as(A_index, CGNS_ENUMV(RealDouble), times), viewer, 0);
480472b9844SJames Wright   *time = times[cgv->solution_index - 1];
481472b9844SJames Wright   *set  = PETSC_TRUE;
482472b9844SJames Wright   PetscCall(PetscFree(times));
483472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
484472b9844SJames Wright }
485472b9844SJames Wright 
486472b9844SJames Wright /*@
487472b9844SJames Wright   PetscViewerCGNSGetSolutionName - Gets name of FlowSolution of the viewer
488472b9844SJames Wright 
489472b9844SJames Wright   Collective
490472b9844SJames Wright 
491472b9844SJames Wright   Input Parameter:
492472b9844SJames Wright . viewer - `PETSCVIEWERCGNS` `PetscViewer` for CGNS input/output to use with the specified file
493472b9844SJames Wright 
494472b9844SJames Wright   Output Parameter:
495472b9844SJames Wright . name - Name of the FlowSolution_t node corresponding to the solution index
496472b9844SJames Wright 
497472b9844SJames Wright   Level: intermediate
498472b9844SJames Wright 
499472b9844SJames Wright   Notes:
500472b9844SJames Wright   Currently assumes there is only one Zone in the CGNS file
501472b9844SJames Wright 
502472b9844SJames Wright .seealso: `PETSCVIEWERCGNS`, `PetscViewer`, `PetscViewerCGNSSetSolutionIndex()`, `PetscViewerCGNSGetSolutionIndex()`, `PetscViewerCGNSGetSolutionTime()`
503472b9844SJames Wright @*/
504472b9844SJames Wright PetscErrorCode PetscViewerCGNSGetSolutionName(PetscViewer viewer, const char *name[])
505472b9844SJames Wright {
506472b9844SJames Wright   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
507472b9844SJames Wright   int               sol_id;
508472b9844SJames Wright   char              buffer[CGIO_MAX_NAME_LENGTH + 1];
509472b9844SJames Wright   CGNS_ENUMT(GridLocation_t) gridloc; // Throwaway
510472b9844SJames Wright 
511472b9844SJames Wright   PetscFunctionBeginUser;
51214640894SJames Wright   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1);
51314640894SJames Wright   PetscAssertPointer(name, 2);
514472b9844SJames Wright   PetscCall(PetscViewerCGNSGetSolutionFileIndex_Internal(viewer, &sol_id));
515472b9844SJames Wright 
516*4c155f28SJames Wright   PetscCallCGNSRead(cg_sol_info(cgv->file_num, cgv->base, cgv->zone, sol_id, buffer, &gridloc), viewer, 0);
517472b9844SJames Wright   if (cgv->solution_name) PetscCall(PetscFree(cgv->solution_name));
518472b9844SJames Wright   PetscCall(PetscStrallocpy(buffer, &cgv->solution_name));
519472b9844SJames Wright   *name = cgv->solution_name;
520472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
521472b9844SJames Wright }
522