1783b601eSJed Brown #define PETSC_DESIRE_FEATURE_TEST_MACROS /* for popen */ 2e5c89e4eSSatish Balay /* 3e5c89e4eSSatish Balay Some PETSc utilites routines to add simple parallel IO capability 4e5c89e4eSSatish Balay */ 5c6db04a5SJed Brown #include <petscsys.h> 6e5c89e4eSSatish Balay #include <stdarg.h> 7e5c89e4eSSatish Balay #if defined(PETSC_HAVE_STDLIB_H) 8e5c89e4eSSatish Balay #include <stdlib.h> 9e5c89e4eSSatish Balay #endif 10e5c89e4eSSatish Balay 11e5c89e4eSSatish Balay #undef __FUNCT__ 12e5c89e4eSSatish Balay #define __FUNCT__ "PetscFOpen" 13e5c89e4eSSatish Balay /*@C 14e5c89e4eSSatish Balay PetscFOpen - Has the first process in the communicator open a file; 15e5c89e4eSSatish Balay all others do nothing. 16e5c89e4eSSatish Balay 173f9fe445SBarry Smith Logically Collective on MPI_Comm 18e5c89e4eSSatish Balay 19e5c89e4eSSatish Balay Input Parameters: 20e5c89e4eSSatish Balay + comm - the communicator 21e5c89e4eSSatish Balay . name - the filename 22e5c89e4eSSatish Balay - mode - the mode for fopen(), usually "w" 23e5c89e4eSSatish Balay 24e5c89e4eSSatish Balay Output Parameter: 25e5c89e4eSSatish Balay . fp - the file pointer 26e5c89e4eSSatish Balay 27e5c89e4eSSatish Balay Level: developer 28e5c89e4eSSatish Balay 29e5c89e4eSSatish Balay Notes: 30*0298fd71SBarry Smith NULL (0), "stderr" or "stdout" may be passed in as the filename 31e5c89e4eSSatish Balay 32e5c89e4eSSatish Balay Fortran Note: 33e5c89e4eSSatish Balay This routine is not supported in Fortran. 34e5c89e4eSSatish Balay 35e5c89e4eSSatish Balay Concepts: opening ASCII file 36e5c89e4eSSatish Balay Concepts: files^opening ASCII 37e5c89e4eSSatish Balay 38d75a2efbSBarry Smith .seealso: PetscFClose(), PetscSynchronizedFGets(), PetscSynchronizedPrintf(), PetscSynchronizedFlush(), 39d75a2efbSBarry Smith PetscFPrintf() 40e5c89e4eSSatish Balay @*/ 417087cfbeSBarry Smith PetscErrorCode PetscFOpen(MPI_Comm comm,const char name[],const char mode[],FILE **fp) 42e5c89e4eSSatish Balay { 43e5c89e4eSSatish Balay PetscErrorCode ierr; 44e5c89e4eSSatish Balay PetscMPIInt rank; 45e5c89e4eSSatish Balay FILE *fd; 46e5c89e4eSSatish Balay char fname[PETSC_MAX_PATH_LEN],tname[PETSC_MAX_PATH_LEN]; 47e5c89e4eSSatish Balay 48e5c89e4eSSatish Balay PetscFunctionBegin; 49e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 50e5c89e4eSSatish Balay if (!rank) { 51ace3abfcSBarry Smith PetscBool isstdout,isstderr; 52e5c89e4eSSatish Balay ierr = PetscStrcmp(name,"stdout",&isstdout);CHKERRQ(ierr); 53e5c89e4eSSatish Balay ierr = PetscStrcmp(name,"stderr",&isstderr);CHKERRQ(ierr); 54a297a907SKarl Rupp if (isstdout || !name) fd = PETSC_STDOUT; 55a297a907SKarl Rupp else if (isstderr) fd = PETSC_STDERR; 56a297a907SKarl Rupp else { 57e5c89e4eSSatish Balay ierr = PetscStrreplace(PETSC_COMM_SELF,name,tname,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 58e5c89e4eSSatish Balay ierr = PetscFixFilename(tname,fname);CHKERRQ(ierr); 59ae15b995SBarry Smith ierr = PetscInfo1(0,"Opening file %s\n",fname);CHKERRQ(ierr); 60e5c89e4eSSatish Balay fd = fopen(fname,mode); 61e32f2f54SBarry Smith if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Unable to open file %s\n",fname); 62e5c89e4eSSatish Balay } 63e5c89e4eSSatish Balay } else fd = 0; 64e5c89e4eSSatish Balay *fp = fd; 65e5c89e4eSSatish Balay PetscFunctionReturn(0); 66e5c89e4eSSatish Balay } 67e5c89e4eSSatish Balay 68e5c89e4eSSatish Balay #undef __FUNCT__ 69e5c89e4eSSatish Balay #define __FUNCT__ "PetscFClose" 70e30d2299SSatish Balay /*@ 71e5c89e4eSSatish Balay PetscFClose - Has the first processor in the communicator close a 72e5c89e4eSSatish Balay file; all others do nothing. 73e5c89e4eSSatish Balay 743f9fe445SBarry Smith Logically Collective on MPI_Comm 75e5c89e4eSSatish Balay 76e5c89e4eSSatish Balay Input Parameters: 77e5c89e4eSSatish Balay + comm - the communicator 78e5c89e4eSSatish Balay - fd - the file, opened with PetscFOpen() 79e5c89e4eSSatish Balay 80e5c89e4eSSatish Balay Level: developer 81e5c89e4eSSatish Balay 82e5c89e4eSSatish Balay Fortran Note: 83e5c89e4eSSatish Balay This routine is not supported in Fortran. 84e5c89e4eSSatish Balay 85e5c89e4eSSatish Balay Concepts: files^closing ASCII 86e5c89e4eSSatish Balay Concepts: closing file 87e5c89e4eSSatish Balay 88e5c89e4eSSatish Balay .seealso: PetscFOpen() 89e5c89e4eSSatish Balay @*/ 907087cfbeSBarry Smith PetscErrorCode PetscFClose(MPI_Comm comm,FILE *fd) 91e5c89e4eSSatish Balay { 92e5c89e4eSSatish Balay PetscErrorCode ierr; 93e5c89e4eSSatish Balay PetscMPIInt rank; 94ed9cf6e9SBarry Smith int err; 95e5c89e4eSSatish Balay 96e5c89e4eSSatish Balay PetscFunctionBegin; 97e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 98ed9cf6e9SBarry Smith if (!rank && fd != PETSC_STDOUT && fd != PETSC_STDERR) { 99ed9cf6e9SBarry Smith err = fclose(fd); 100e32f2f54SBarry Smith if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 101ed9cf6e9SBarry Smith } 102e5c89e4eSSatish Balay PetscFunctionReturn(0); 103e5c89e4eSSatish Balay } 104e5c89e4eSSatish Balay 105e5c89e4eSSatish Balay #if defined(PETSC_HAVE_POPEN) 106e5c89e4eSSatish Balay 107e5c89e4eSSatish Balay #undef __FUNCT__ 108e5c89e4eSSatish Balay #define __FUNCT__ "PetscPClose" 109e5c89e4eSSatish Balay /*@C 110e5c89e4eSSatish Balay PetscPClose - Closes (ends) a program on processor zero run with PetscPOpen() 111e5c89e4eSSatish Balay 112e5c89e4eSSatish Balay Collective on MPI_Comm, but only process 0 runs the command 113e5c89e4eSSatish Balay 114e5c89e4eSSatish Balay Input Parameters: 115e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 116*0298fd71SBarry Smith - fp - the file pointer where program input or output may be read or NULL if don't care 117e5c89e4eSSatish Balay 118784ad74dSJed Brown Output Parameters: 119*0298fd71SBarry Smith . rval - return value from pclose() or NULL to raise an error on failure 120784ad74dSJed Brown 121e5c89e4eSSatish Balay Level: intermediate 122e5c89e4eSSatish Balay 123e5c89e4eSSatish Balay Notes: 124e5c89e4eSSatish Balay Does not work under Windows 125e5c89e4eSSatish Balay 126e5c89e4eSSatish Balay .seealso: PetscFOpen(), PetscFClose(), PetscPOpen() 127e5c89e4eSSatish Balay 128e5c89e4eSSatish Balay @*/ 129784ad74dSJed Brown PetscErrorCode PetscPClose(MPI_Comm comm,FILE *fd,PetscInt *rval) 130e5c89e4eSSatish Balay { 131e5c89e4eSSatish Balay PetscErrorCode ierr; 132e5c89e4eSSatish Balay PetscMPIInt rank; 133ed9cf6e9SBarry Smith int err; 134e5c89e4eSSatish Balay 135e5c89e4eSSatish Balay PetscFunctionBegin; 136e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 137e5c89e4eSSatish Balay if (!rank) { 138e5c89e4eSSatish Balay char buf[1024]; 139a297a907SKarl Rupp while (fgets(buf,1024,fd)) ; /* wait till it prints everything */ 140ed9cf6e9SBarry Smith err = pclose(fd); 141784ad74dSJed Brown if (rval) *rval = err; 142784ad74dSJed Brown else if (err) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SYS,"pclose() failed with error code %D",err); 143e5c89e4eSSatish Balay } 144e5c89e4eSSatish Balay PetscFunctionReturn(0); 145e5c89e4eSSatish Balay } 146e5c89e4eSSatish Balay 147e5c89e4eSSatish Balay 148e5c89e4eSSatish Balay #undef __FUNCT__ 149e5c89e4eSSatish Balay #define __FUNCT__ "PetscPOpen" 150e5c89e4eSSatish Balay /*@C 151e5c89e4eSSatish Balay PetscPOpen - Runs a program on processor zero and sends either its input or output to 152e5c89e4eSSatish Balay a file. 153e5c89e4eSSatish Balay 1543f9fe445SBarry Smith Logically Collective on MPI_Comm, but only process 0 runs the command 155e5c89e4eSSatish Balay 156e5c89e4eSSatish Balay Input Parameters: 157e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 158*0298fd71SBarry Smith . machine - machine to run command on or NULL, or string with 0 in first location 159e5c89e4eSSatish Balay . program - name of program to run 160e5c89e4eSSatish Balay - mode - either r or w 161e5c89e4eSSatish Balay 162e5c89e4eSSatish Balay Output Parameter: 163*0298fd71SBarry Smith . fp - the file pointer where program input or output may be read or NULL if don't care 164e5c89e4eSSatish Balay 165e5c89e4eSSatish Balay Level: intermediate 166e5c89e4eSSatish Balay 167e5c89e4eSSatish Balay Notes: 168e5c89e4eSSatish Balay Use PetscPClose() to close the file pointer when you are finished with it 169e5c89e4eSSatish Balay Does not work under Windows 170e5c89e4eSSatish Balay 171e5c89e4eSSatish Balay The program string may contain ${DISPLAY}, ${HOMEDIRECTORY} or ${WORKINGDIRECTORY}; these 172e5c89e4eSSatish Balay will be replaced with relevent values. 173e5c89e4eSSatish Balay 174e5c89e4eSSatish Balay .seealso: PetscFOpen(), PetscFClose(), PetscPClose() 175e5c89e4eSSatish Balay 176e5c89e4eSSatish Balay @*/ 1777087cfbeSBarry Smith PetscErrorCode PetscPOpen(MPI_Comm comm,const char machine[],const char program[],const char mode[],FILE **fp) 178e5c89e4eSSatish Balay { 179e5c89e4eSSatish Balay PetscErrorCode ierr; 180e5c89e4eSSatish Balay PetscMPIInt rank; 181e5c89e4eSSatish Balay size_t i,len,cnt; 182e5c89e4eSSatish Balay char commandt[PETSC_MAX_PATH_LEN],command[PETSC_MAX_PATH_LEN]; 183e5c89e4eSSatish Balay FILE *fd; 184e5c89e4eSSatish Balay 185e5c89e4eSSatish Balay PetscFunctionBegin; 186e5c89e4eSSatish Balay /* all processors have to do the string manipulation because PetscStrreplace() is a collective operation */ 187e5c89e4eSSatish Balay if (machine && machine[0]) { 188e5c89e4eSSatish Balay ierr = PetscStrcpy(command,"ssh ");CHKERRQ(ierr); 189e5c89e4eSSatish Balay ierr = PetscStrcat(command,machine);CHKERRQ(ierr); 190d5649816SBarry Smith ierr = PetscStrcat(command," \" export DISPLAY=${DISPLAY}; ");CHKERRQ(ierr); 191e5c89e4eSSatish Balay /* 192e5c89e4eSSatish Balay Copy program into command but protect the " with a \ in front of it 193e5c89e4eSSatish Balay */ 194e5c89e4eSSatish Balay ierr = PetscStrlen(command,&cnt);CHKERRQ(ierr); 195e5c89e4eSSatish Balay ierr = PetscStrlen(program,&len);CHKERRQ(ierr); 196e5c89e4eSSatish Balay for (i=0; i<len; i++) { 197a297a907SKarl Rupp if (program[i] == '\"') command[cnt++] = '\\'; 198e5c89e4eSSatish Balay command[cnt++] = program[i]; 199e5c89e4eSSatish Balay } 200e5c89e4eSSatish Balay command[cnt] = 0; 201a297a907SKarl Rupp 202e5c89e4eSSatish Balay ierr = PetscStrcat(command,"\"");CHKERRQ(ierr); 203e5c89e4eSSatish Balay } else { 204e5c89e4eSSatish Balay ierr = PetscStrcpy(command,program);CHKERRQ(ierr); 205e5c89e4eSSatish Balay } 206e5c89e4eSSatish Balay 207e5c89e4eSSatish Balay ierr = PetscStrreplace(comm,command,commandt,1024);CHKERRQ(ierr); 208e5c89e4eSSatish Balay 209e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 210e5c89e4eSSatish Balay if (!rank) { 211ae15b995SBarry Smith ierr = PetscInfo1(0,"Running command :%s\n",commandt);CHKERRQ(ierr); 212f23aa3ddSBarry Smith if (!(fd = popen(commandt,mode))) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Cannot run command %s",commandt); 213e5c89e4eSSatish Balay if (fp) *fp = fd; 214e5c89e4eSSatish Balay } 215e5c89e4eSSatish Balay PetscFunctionReturn(0); 216e5c89e4eSSatish Balay } 217e5c89e4eSSatish Balay 218e5c89e4eSSatish Balay #endif 219