10039db0dSBarry Smith #define PETSC_DESIRE_FEATURE_TEST_MACROS /* for popen() */ 2e5c89e4eSSatish Balay /* 34c500f23SPierre Jolivet Some PETSc utility routines to add simple parallel IO capabilities 4e5c89e4eSSatish Balay */ 5c6db04a5SJed Brown #include <petscsys.h> 6e94e781bSJacob Faibussowitsch #include <petsc/private/logimpl.h> 7d0286d30SJed Brown #include <errno.h> 8d0286d30SJed Brown 9e5c89e4eSSatish Balay /*@C 10e5c89e4eSSatish Balay PetscFOpen - Has the first process in the communicator open a file; 11e5c89e4eSSatish Balay all others do nothing. 12e5c89e4eSSatish Balay 13d083f849SBarry Smith Logically Collective 14e5c89e4eSSatish Balay 15e5c89e4eSSatish Balay Input Parameters: 16e5c89e4eSSatish Balay + comm - the communicator 17e5c89e4eSSatish Balay . name - the filename 18e5c89e4eSSatish Balay - mode - the mode for fopen(), usually "w" 19e5c89e4eSSatish Balay 20e5c89e4eSSatish Balay Output Parameter: 21e5c89e4eSSatish Balay . fp - the file pointer 22e5c89e4eSSatish Balay 23e5c89e4eSSatish Balay Level: developer 24e5c89e4eSSatish Balay 25e5c89e4eSSatish Balay Notes: 260298fd71SBarry Smith NULL (0), "stderr" or "stdout" may be passed in as the filename 27e5c89e4eSSatish Balay 28e5c89e4eSSatish Balay Fortran Note: 29e5c89e4eSSatish Balay This routine is not supported in Fortran. 30e5c89e4eSSatish Balay 31d75a2efbSBarry Smith .seealso: PetscFClose(), PetscSynchronizedFGets(), PetscSynchronizedPrintf(), PetscSynchronizedFlush(), 32d75a2efbSBarry Smith PetscFPrintf() 33e5c89e4eSSatish Balay @*/ 347087cfbeSBarry Smith PetscErrorCode PetscFOpen(MPI_Comm comm,const char name[],const char mode[],FILE **fp) 35e5c89e4eSSatish Balay { 36e5c89e4eSSatish Balay PetscMPIInt rank; 37e5c89e4eSSatish Balay FILE *fd; 38e5c89e4eSSatish Balay char fname[PETSC_MAX_PATH_LEN],tname[PETSC_MAX_PATH_LEN]; 39e5c89e4eSSatish Balay 40e5c89e4eSSatish Balay PetscFunctionBegin; 415f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(comm,&rank)); 42dd400576SPatrick Sanan if (rank == 0) { 43ace3abfcSBarry Smith PetscBool isstdout,isstderr; 445f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(name,"stdout",&isstdout)); 455f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(name,"stderr",&isstderr)); 46a297a907SKarl Rupp if (isstdout || !name) fd = PETSC_STDOUT; 47a297a907SKarl Rupp else if (isstderr) fd = PETSC_STDERR; 48a297a907SKarl Rupp else { 49b3f259d6SBarry Smith PetscBool devnull; 505f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrreplace(PETSC_COMM_SELF,name,tname,PETSC_MAX_PATH_LEN)); 515f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFixFilename(tname,fname)); 525f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrbeginswith(fname,"/dev/null",&devnull)); 53b3f259d6SBarry Smith if (devnull) { 545f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcpy(fname,"/dev/null")); 55b3f259d6SBarry Smith } 565f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(0,"Opening file %s\n",fname)); 57e5c89e4eSSatish Balay fd = fopen(fname,mode); 58*28b400f6SJacob Faibussowitsch PetscCheck(fd,PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Unable to open file %s",fname); 59e5c89e4eSSatish Balay } 6002c9f0b5SLisandro Dalcin } else fd = NULL; 61e5c89e4eSSatish Balay *fp = fd; 62e5c89e4eSSatish Balay PetscFunctionReturn(0); 63e5c89e4eSSatish Balay } 64e5c89e4eSSatish Balay 65e8976759SBarry Smith /*@C 66e5c89e4eSSatish Balay PetscFClose - Has the first processor in the communicator close a 67e5c89e4eSSatish Balay file; all others do nothing. 68e5c89e4eSSatish Balay 69d083f849SBarry Smith Logically Collective 70e5c89e4eSSatish Balay 71e5c89e4eSSatish Balay Input Parameters: 72e5c89e4eSSatish Balay + comm - the communicator 73e5c89e4eSSatish Balay - fd - the file, opened with PetscFOpen() 74e5c89e4eSSatish Balay 75e5c89e4eSSatish Balay Level: developer 76e5c89e4eSSatish Balay 77e5c89e4eSSatish Balay Fortran Note: 78e5c89e4eSSatish Balay This routine is not supported in Fortran. 79e5c89e4eSSatish Balay 80e5c89e4eSSatish Balay .seealso: PetscFOpen() 81e5c89e4eSSatish Balay @*/ 827087cfbeSBarry Smith PetscErrorCode PetscFClose(MPI_Comm comm,FILE *fd) 83e5c89e4eSSatish Balay { 84e5c89e4eSSatish Balay PetscMPIInt rank; 85ed9cf6e9SBarry Smith int err; 86e5c89e4eSSatish Balay 87e5c89e4eSSatish Balay PetscFunctionBegin; 885f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(comm,&rank)); 89dd400576SPatrick Sanan if (rank == 0 && fd != PETSC_STDOUT && fd != PETSC_STDERR) { 90ed9cf6e9SBarry Smith err = fclose(fd); 91*28b400f6SJacob Faibussowitsch PetscCheck(!err,PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 92ed9cf6e9SBarry Smith } 93e5c89e4eSSatish Balay PetscFunctionReturn(0); 94e5c89e4eSSatish Balay } 95e5c89e4eSSatish Balay 96e5c89e4eSSatish Balay #if defined(PETSC_HAVE_POPEN) 9774ba8654SBarry Smith static char PetscPOpenMachine[128] = ""; 98e5c89e4eSSatish Balay 99e5c89e4eSSatish Balay /*@C 100e5c89e4eSSatish Balay PetscPClose - Closes (ends) a program on processor zero run with PetscPOpen() 101e5c89e4eSSatish Balay 102d083f849SBarry Smith Collective, but only process 0 runs the command 103e5c89e4eSSatish Balay 104e5c89e4eSSatish Balay Input Parameters: 105e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 1060298fd71SBarry Smith - fp - the file pointer where program input or output may be read or NULL if don't care 107e5c89e4eSSatish Balay 108e5c89e4eSSatish Balay Level: intermediate 109e5c89e4eSSatish Balay 110e5c89e4eSSatish Balay Notes: 111e5c89e4eSSatish Balay Does not work under Windows 112e5c89e4eSSatish Balay 113e5c89e4eSSatish Balay .seealso: PetscFOpen(), PetscFClose(), PetscPOpen() 114e5c89e4eSSatish Balay 115e5c89e4eSSatish Balay @*/ 116016831caSBarry Smith PetscErrorCode PetscPClose(MPI_Comm comm,FILE *fd) 117e5c89e4eSSatish Balay { 118e5c89e4eSSatish Balay PetscMPIInt rank; 119e5c89e4eSSatish Balay 120e5c89e4eSSatish Balay PetscFunctionBegin; 1215f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(comm,&rank)); 122dd400576SPatrick Sanan if (rank == 0) { 123e5c89e4eSSatish Balay char buf[1024]; 124a297a907SKarl Rupp while (fgets(buf,1024,fd)) ; /* wait till it prints everything */ 125016831caSBarry Smith (void) pclose(fd); 126e5c89e4eSSatish Balay } 127e5c89e4eSSatish Balay PetscFunctionReturn(0); 128e5c89e4eSSatish Balay } 129e5c89e4eSSatish Balay 130e5c89e4eSSatish Balay /*@C 131e5c89e4eSSatish Balay PetscPOpen - Runs a program on processor zero and sends either its input or output to 132e5c89e4eSSatish Balay a file. 133e5c89e4eSSatish Balay 134d083f849SBarry Smith Logically Collective, but only process 0 runs the command 135e5c89e4eSSatish Balay 136e5c89e4eSSatish Balay Input Parameters: 137e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 1380298fd71SBarry Smith . machine - machine to run command on or NULL, or string with 0 in first location 139e5c89e4eSSatish Balay . program - name of program to run 140e5c89e4eSSatish Balay - mode - either r or w 141e5c89e4eSSatish Balay 142e5c89e4eSSatish Balay Output Parameter: 1430298fd71SBarry Smith . fp - the file pointer where program input or output may be read or NULL if don't care 144e5c89e4eSSatish Balay 145e5c89e4eSSatish Balay Level: intermediate 146e5c89e4eSSatish Balay 147e5c89e4eSSatish Balay Notes: 148e5c89e4eSSatish Balay Use PetscPClose() to close the file pointer when you are finished with it 149e5c89e4eSSatish Balay Does not work under Windows 150e5c89e4eSSatish Balay 15174ba8654SBarry Smith If machine is not provided will use the value set with PetsPOpenSetMachine() if that was provided, otherwise 15274ba8654SBarry Smith will use the machine running node zero of the communicator 15374ba8654SBarry Smith 154e5c89e4eSSatish Balay The program string may contain ${DISPLAY}, ${HOMEDIRECTORY} or ${WORKINGDIRECTORY}; these 155a5b23f4aSJose E. Roman will be replaced with relevant values. 156e5c89e4eSSatish Balay 15774ba8654SBarry Smith .seealso: PetscFOpen(), PetscFClose(), PetscPClose(), PetscPOpenSetMachine() 158e5c89e4eSSatish Balay 159e5c89e4eSSatish Balay @*/ 1607087cfbeSBarry Smith PetscErrorCode PetscPOpen(MPI_Comm comm,const char machine[],const char program[],const char mode[],FILE **fp) 161e5c89e4eSSatish Balay { 162e5c89e4eSSatish Balay PetscMPIInt rank; 163e5c89e4eSSatish Balay size_t i,len,cnt; 164e5c89e4eSSatish Balay char commandt[PETSC_MAX_PATH_LEN],command[PETSC_MAX_PATH_LEN]; 165e5c89e4eSSatish Balay FILE *fd; 166e5c89e4eSSatish Balay 167e5c89e4eSSatish Balay PetscFunctionBegin; 168e5c89e4eSSatish Balay /* all processors have to do the string manipulation because PetscStrreplace() is a collective operation */ 16974ba8654SBarry Smith if (PetscPOpenMachine[0] || (machine && machine[0])) { 1705f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcpy(command,"ssh ")); 17174ba8654SBarry Smith if (PetscPOpenMachine[0]) { 1725f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcat(command,PetscPOpenMachine)); 17374ba8654SBarry Smith } else { 1745f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcat(command,machine)); 17574ba8654SBarry Smith } 1765f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcat(command," \" export DISPLAY=${DISPLAY}; ")); 177e5c89e4eSSatish Balay /* 178e5c89e4eSSatish Balay Copy program into command but protect the " with a \ in front of it 179e5c89e4eSSatish Balay */ 1805f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrlen(command,&cnt)); 1815f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrlen(program,&len)); 182e5c89e4eSSatish Balay for (i=0; i<len; i++) { 183a297a907SKarl Rupp if (program[i] == '\"') command[cnt++] = '\\'; 184e5c89e4eSSatish Balay command[cnt++] = program[i]; 185e5c89e4eSSatish Balay } 186e5c89e4eSSatish Balay command[cnt] = 0; 187a297a907SKarl Rupp 1885f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcat(command,"\"")); 189e5c89e4eSSatish Balay } else { 1905f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcpy(command,program)); 191e5c89e4eSSatish Balay } 192e5c89e4eSSatish Balay 1935f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrreplace(comm,command,commandt,1024)); 194e5c89e4eSSatish Balay 1955f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(comm,&rank)); 196dd400576SPatrick Sanan if (rank == 0) { 1975f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(NULL,"Running command :%s\n",commandt)); 1982c71b3e2SJacob Faibussowitsch PetscCheckFalse(!(fd = popen(commandt,mode)),PETSC_COMM_SELF,PETSC_ERR_LIB,"Cannot run command %s",commandt); 199e5c89e4eSSatish Balay if (fp) *fp = fd; 200e5c89e4eSSatish Balay } 201e5c89e4eSSatish Balay PetscFunctionReturn(0); 202e5c89e4eSSatish Balay } 203e5c89e4eSSatish Balay 20474ba8654SBarry Smith /*@C 20574ba8654SBarry Smith PetscPOpenSetMachine - Sets the name of the default machine to run PetscPOpen() calls on 20674ba8654SBarry Smith 207d083f849SBarry Smith Logically Collective, but only process 0 runs the command 20874ba8654SBarry Smith 20974ba8654SBarry Smith Input Parameter: 21010699b91SBarry Smith . machine - machine to run command on or NULL for the current machine 21174ba8654SBarry Smith 21274ba8654SBarry Smith Options Database: 21310699b91SBarry Smith . -popen_machine <machine> - run the process on this machine 21474ba8654SBarry Smith 21574ba8654SBarry Smith Level: intermediate 21674ba8654SBarry Smith 21774ba8654SBarry Smith .seealso: PetscFOpen(), PetscFClose(), PetscPClose(), PetscPOpen() 21874ba8654SBarry Smith @*/ 21974ba8654SBarry Smith PetscErrorCode PetscPOpenSetMachine(const char machine[]) 22074ba8654SBarry Smith { 22174ba8654SBarry Smith PetscFunctionBegin; 22274ba8654SBarry Smith if (machine) { 2235f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcpy(PetscPOpenMachine,machine)); 22474ba8654SBarry Smith } else { 22574ba8654SBarry Smith PetscPOpenMachine[0] = 0; 22674ba8654SBarry Smith } 22774ba8654SBarry Smith PetscFunctionReturn(0); 22874ba8654SBarry Smith } 22974ba8654SBarry Smith 230e5c89e4eSSatish Balay #endif 231