1e5c89e4eSSatish Balay #define PETSC_DLL 2e5c89e4eSSatish Balay /* 3e5c89e4eSSatish Balay Some PETSc utilites routines to add simple parallel IO capability 4e5c89e4eSSatish Balay */ 5e5c89e4eSSatish Balay #include "petsc.h" 6e5c89e4eSSatish Balay #include "petscsys.h" 7e5c89e4eSSatish Balay #include <stdarg.h> 8e5c89e4eSSatish Balay #if defined(PETSC_HAVE_STDLIB_H) 9e5c89e4eSSatish Balay #include <stdlib.h> 10e5c89e4eSSatish Balay #endif 11e5c89e4eSSatish Balay #include "petscfix.h" 12e5c89e4eSSatish Balay 13e5c89e4eSSatish Balay #undef __FUNCT__ 14e5c89e4eSSatish Balay #define __FUNCT__ "PetscFOpen" 15e5c89e4eSSatish Balay /*@C 16e5c89e4eSSatish Balay PetscFOpen - Has the first process in the communicator open a file; 17e5c89e4eSSatish Balay all others do nothing. 18e5c89e4eSSatish Balay 19e5c89e4eSSatish Balay Collective on MPI_Comm 20e5c89e4eSSatish Balay 21e5c89e4eSSatish Balay Input Parameters: 22e5c89e4eSSatish Balay + comm - the communicator 23e5c89e4eSSatish Balay . name - the filename 24e5c89e4eSSatish Balay - mode - the mode for fopen(), usually "w" 25e5c89e4eSSatish Balay 26e5c89e4eSSatish Balay Output Parameter: 27e5c89e4eSSatish Balay . fp - the file pointer 28e5c89e4eSSatish Balay 29e5c89e4eSSatish Balay Level: developer 30e5c89e4eSSatish Balay 31e5c89e4eSSatish Balay Notes: 32e5c89e4eSSatish Balay PETSC_NULL (0), "stderr" or "stdout" may be passed in as the filename 33e5c89e4eSSatish Balay 34e5c89e4eSSatish Balay Fortran Note: 35e5c89e4eSSatish Balay This routine is not supported in Fortran. 36e5c89e4eSSatish Balay 37e5c89e4eSSatish Balay Concepts: opening ASCII file 38e5c89e4eSSatish Balay Concepts: files^opening ASCII 39e5c89e4eSSatish Balay 40e5c89e4eSSatish Balay .seealso: PetscFClose() 41e5c89e4eSSatish Balay @*/ 42e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscFOpen(MPI_Comm comm,const char name[],const char mode[],FILE **fp) 43e5c89e4eSSatish Balay { 44e5c89e4eSSatish Balay PetscErrorCode ierr; 45e5c89e4eSSatish Balay PetscMPIInt rank; 46e5c89e4eSSatish Balay FILE *fd; 47e5c89e4eSSatish Balay char fname[PETSC_MAX_PATH_LEN],tname[PETSC_MAX_PATH_LEN]; 48e5c89e4eSSatish Balay 49e5c89e4eSSatish Balay PetscFunctionBegin; 50e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 51e5c89e4eSSatish Balay if (!rank) { 52e5c89e4eSSatish Balay PetscTruth isstdout,isstderr; 53e5c89e4eSSatish Balay ierr = PetscStrcmp(name,"stdout",&isstdout);CHKERRQ(ierr); 54e5c89e4eSSatish Balay ierr = PetscStrcmp(name,"stderr",&isstderr);CHKERRQ(ierr); 55e5c89e4eSSatish Balay if (isstdout || !name) { 56e5c89e4eSSatish Balay fd = stdout; 57e5c89e4eSSatish Balay } else if (isstderr) { 58e5c89e4eSSatish Balay fd = stderr; 59e5c89e4eSSatish Balay } else { 60e5c89e4eSSatish Balay ierr = PetscStrreplace(PETSC_COMM_SELF,name,tname,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 61e5c89e4eSSatish Balay ierr = PetscFixFilename(tname,fname);CHKERRQ(ierr); 62*ae15b995SBarry Smith ierr = PetscInfo1(0,"Opening file %s\n",fname);CHKERRQ(ierr); 63e5c89e4eSSatish Balay fd = fopen(fname,mode); 64e5c89e4eSSatish Balay if (!fd) SETERRQ1(PETSC_ERR_FILE_OPEN,"Unable to open file %s\n",fname); 65e5c89e4eSSatish Balay } 66e5c89e4eSSatish Balay } else fd = 0; 67e5c89e4eSSatish Balay *fp = fd; 68e5c89e4eSSatish Balay PetscFunctionReturn(0); 69e5c89e4eSSatish Balay } 70e5c89e4eSSatish Balay 71e5c89e4eSSatish Balay #undef __FUNCT__ 72e5c89e4eSSatish Balay #define __FUNCT__ "PetscFClose" 73e30d2299SSatish Balay /*@ 74e5c89e4eSSatish Balay PetscFClose - Has the first processor in the communicator close a 75e5c89e4eSSatish Balay file; all others do nothing. 76e5c89e4eSSatish Balay 77e5c89e4eSSatish Balay Collective on MPI_Comm 78e5c89e4eSSatish Balay 79e5c89e4eSSatish Balay Input Parameters: 80e5c89e4eSSatish Balay + comm - the communicator 81e5c89e4eSSatish Balay - fd - the file, opened with PetscFOpen() 82e5c89e4eSSatish Balay 83e5c89e4eSSatish Balay Level: developer 84e5c89e4eSSatish Balay 85e5c89e4eSSatish Balay Fortran Note: 86e5c89e4eSSatish Balay This routine is not supported in Fortran. 87e5c89e4eSSatish Balay 88e5c89e4eSSatish Balay Concepts: files^closing ASCII 89e5c89e4eSSatish Balay Concepts: closing file 90e5c89e4eSSatish Balay 91e5c89e4eSSatish Balay .seealso: PetscFOpen() 92e5c89e4eSSatish Balay @*/ 93e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscFClose(MPI_Comm comm,FILE *fd) 94e5c89e4eSSatish Balay { 95e5c89e4eSSatish Balay PetscErrorCode ierr; 96e5c89e4eSSatish Balay PetscMPIInt rank; 97e5c89e4eSSatish Balay 98e5c89e4eSSatish Balay PetscFunctionBegin; 99e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 100e5c89e4eSSatish Balay if (!rank && fd != stdout && fd != stderr) fclose(fd); 101e5c89e4eSSatish Balay PetscFunctionReturn(0); 102e5c89e4eSSatish Balay } 103e5c89e4eSSatish Balay 104e5c89e4eSSatish Balay #if defined(PETSC_HAVE_POPEN) 105e5c89e4eSSatish Balay 106e5c89e4eSSatish Balay #undef __FUNCT__ 107e5c89e4eSSatish Balay #define __FUNCT__ "PetscPClose" 108e5c89e4eSSatish Balay /*@C 109e5c89e4eSSatish Balay PetscPClose - Closes (ends) a program on processor zero run with PetscPOpen() 110e5c89e4eSSatish Balay 111e5c89e4eSSatish Balay Collective on MPI_Comm, but only process 0 runs the command 112e5c89e4eSSatish Balay 113e5c89e4eSSatish Balay Input Parameters: 114e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 115e5c89e4eSSatish Balay - fp - the file pointer where program input or output may be read or PETSC_NULL if don't care 116e5c89e4eSSatish Balay 117e5c89e4eSSatish Balay Level: intermediate 118e5c89e4eSSatish Balay 119e5c89e4eSSatish Balay Notes: 120e5c89e4eSSatish Balay Does not work under Windows 121e5c89e4eSSatish Balay 122e5c89e4eSSatish Balay .seealso: PetscFOpen(), PetscFClose(), PetscPOpen() 123e5c89e4eSSatish Balay 124e5c89e4eSSatish Balay @*/ 125e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscPClose(MPI_Comm comm,FILE *fd) 126e5c89e4eSSatish Balay { 127e5c89e4eSSatish Balay PetscErrorCode ierr; 128e5c89e4eSSatish Balay PetscMPIInt rank; 129e5c89e4eSSatish Balay 130e5c89e4eSSatish Balay PetscFunctionBegin; 131e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 132e5c89e4eSSatish Balay if (!rank) { 133e5c89e4eSSatish Balay char buf[1024]; 134e5c89e4eSSatish Balay while (fgets(buf,1024,fd)) {;} /* wait till it prints everything */ 135e5c89e4eSSatish Balay pclose(fd); 136e5c89e4eSSatish Balay } 137e5c89e4eSSatish Balay PetscFunctionReturn(0); 138e5c89e4eSSatish Balay } 139e5c89e4eSSatish Balay 140e5c89e4eSSatish Balay 141e5c89e4eSSatish Balay #undef __FUNCT__ 142e5c89e4eSSatish Balay #define __FUNCT__ "PetscPOpen" 143e5c89e4eSSatish Balay /*@C 144e5c89e4eSSatish Balay PetscPOpen - Runs a program on processor zero and sends either its input or output to 145e5c89e4eSSatish Balay a file. 146e5c89e4eSSatish Balay 147e5c89e4eSSatish Balay Collective on MPI_Comm, but only process 0 runs the command 148e5c89e4eSSatish Balay 149e5c89e4eSSatish Balay Input Parameters: 150e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 151e5c89e4eSSatish Balay . machine - machine to run command on or PETSC_NULL, or string with 0 in first location 152e5c89e4eSSatish Balay . program - name of program to run 153e5c89e4eSSatish Balay - mode - either r or w 154e5c89e4eSSatish Balay 155e5c89e4eSSatish Balay Output Parameter: 156e5c89e4eSSatish Balay . fp - the file pointer where program input or output may be read or PETSC_NULL if don't care 157e5c89e4eSSatish Balay 158e5c89e4eSSatish Balay Level: intermediate 159e5c89e4eSSatish Balay 160e5c89e4eSSatish Balay Notes: 161e5c89e4eSSatish Balay Use PetscPClose() to close the file pointer when you are finished with it 162e5c89e4eSSatish Balay Does not work under Windows 163e5c89e4eSSatish Balay 164e5c89e4eSSatish Balay The program string may contain ${DISPLAY}, ${HOMEDIRECTORY} or ${WORKINGDIRECTORY}; these 165e5c89e4eSSatish Balay will be replaced with relevent values. 166e5c89e4eSSatish Balay 167e5c89e4eSSatish Balay .seealso: PetscFOpen(), PetscFClose(), PetscPClose() 168e5c89e4eSSatish Balay 169e5c89e4eSSatish Balay @*/ 170e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscPOpen(MPI_Comm comm,const char machine[],const char program[],const char mode[],FILE **fp) 171e5c89e4eSSatish Balay { 172e5c89e4eSSatish Balay PetscErrorCode ierr; 173e5c89e4eSSatish Balay PetscMPIInt rank; 174e5c89e4eSSatish Balay size_t i,len,cnt; 175e5c89e4eSSatish Balay char commandt[PETSC_MAX_PATH_LEN],command[PETSC_MAX_PATH_LEN]; 176e5c89e4eSSatish Balay FILE *fd; 177e5c89e4eSSatish Balay 178e5c89e4eSSatish Balay PetscFunctionBegin; 179e5c89e4eSSatish Balay 180e5c89e4eSSatish Balay /* all processors have to do the string manipulation because PetscStrreplace() is a collective operation */ 181e5c89e4eSSatish Balay if (machine && machine[0]) { 182e5c89e4eSSatish Balay ierr = PetscStrcpy(command,"ssh ");CHKERRQ(ierr); 183e5c89e4eSSatish Balay ierr = PetscStrcat(command,machine);CHKERRQ(ierr); 184e5c89e4eSSatish Balay ierr = PetscStrcat(command," \" setenv DISPLAY ${DISPLAY}; ");CHKERRQ(ierr); 185e5c89e4eSSatish Balay /* 186e5c89e4eSSatish Balay Copy program into command but protect the " with a \ in front of it 187e5c89e4eSSatish Balay */ 188e5c89e4eSSatish Balay ierr = PetscStrlen(command,&cnt);CHKERRQ(ierr); 189e5c89e4eSSatish Balay ierr = PetscStrlen(program,&len);CHKERRQ(ierr); 190e5c89e4eSSatish Balay for (i=0; i<len; i++) { 191e5c89e4eSSatish Balay if (program[i] == '\"') { 192e5c89e4eSSatish Balay command[cnt++] = '\\'; 193e5c89e4eSSatish Balay } 194e5c89e4eSSatish Balay command[cnt++] = program[i]; 195e5c89e4eSSatish Balay } 196e5c89e4eSSatish Balay command[cnt] = 0; 197e5c89e4eSSatish Balay ierr = PetscStrcat(command,"\"");CHKERRQ(ierr); 198e5c89e4eSSatish Balay } else { 199e5c89e4eSSatish Balay ierr = PetscStrcpy(command,program);CHKERRQ(ierr); 200e5c89e4eSSatish Balay } 201e5c89e4eSSatish Balay 202e5c89e4eSSatish Balay ierr = PetscStrreplace(comm,command,commandt,1024);CHKERRQ(ierr); 203e5c89e4eSSatish Balay 204e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 205e5c89e4eSSatish Balay if (!rank) { 206*ae15b995SBarry Smith ierr = PetscInfo1(0,"Running command :%s\n",commandt);CHKERRQ(ierr); 207e5c89e4eSSatish Balay if (!(fd = popen(commandt,mode))) { 208e5c89e4eSSatish Balay SETERRQ1(PETSC_ERR_LIB,"Cannot run command %s",commandt); 209e5c89e4eSSatish Balay } 210e5c89e4eSSatish Balay if (fp) *fp = fd; 211e5c89e4eSSatish Balay } 212e5c89e4eSSatish Balay PetscFunctionReturn(0); 213e5c89e4eSSatish Balay } 214e5c89e4eSSatish Balay 215e5c89e4eSSatish Balay #endif 216