1e5c89e4eSSatish Balay #define PETSC_DLL 2e5c89e4eSSatish Balay /* 3e5c89e4eSSatish Balay Some PETSc utilites routines to add simple parallel IO capability 4e5c89e4eSSatish Balay */ 5e5c89e4eSSatish Balay #include "petsc.h" 6e5c89e4eSSatish Balay #include "petscsys.h" 7e5c89e4eSSatish Balay #include <stdarg.h> 8e5c89e4eSSatish Balay #if defined(PETSC_HAVE_STDLIB_H) 9e5c89e4eSSatish Balay #include <stdlib.h> 10e5c89e4eSSatish Balay #endif 11e5c89e4eSSatish Balay #include "petscfix.h" 12e5c89e4eSSatish Balay 13e5c89e4eSSatish Balay #undef __FUNCT__ 14e5c89e4eSSatish Balay #define __FUNCT__ "PetscFOpen" 15e5c89e4eSSatish Balay /*@C 16e5c89e4eSSatish Balay PetscFOpen - Has the first process in the communicator open a file; 17e5c89e4eSSatish Balay all others do nothing. 18e5c89e4eSSatish Balay 19e5c89e4eSSatish Balay Collective on MPI_Comm 20e5c89e4eSSatish Balay 21e5c89e4eSSatish Balay Input Parameters: 22e5c89e4eSSatish Balay + comm - the communicator 23e5c89e4eSSatish Balay . name - the filename 24e5c89e4eSSatish Balay - mode - the mode for fopen(), usually "w" 25e5c89e4eSSatish Balay 26e5c89e4eSSatish Balay Output Parameter: 27e5c89e4eSSatish Balay . fp - the file pointer 28e5c89e4eSSatish Balay 29e5c89e4eSSatish Balay Level: developer 30e5c89e4eSSatish Balay 31e5c89e4eSSatish Balay Notes: 32e5c89e4eSSatish Balay PETSC_NULL (0), "stderr" or "stdout" may be passed in as the filename 33e5c89e4eSSatish Balay 34e5c89e4eSSatish Balay Fortran Note: 35e5c89e4eSSatish Balay This routine is not supported in Fortran. 36e5c89e4eSSatish Balay 37e5c89e4eSSatish Balay Concepts: opening ASCII file 38e5c89e4eSSatish Balay Concepts: files^opening ASCII 39e5c89e4eSSatish Balay 40d75a2efbSBarry Smith .seealso: PetscFClose(), PetscSynchronizedFGets(), PetscSynchronizedPrintf(), PetscSynchronizedFlush(), 41d75a2efbSBarry Smith PetscFPrintf() 42e5c89e4eSSatish Balay @*/ 43e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscFOpen(MPI_Comm comm,const char name[],const char mode[],FILE **fp) 44e5c89e4eSSatish Balay { 45e5c89e4eSSatish Balay PetscErrorCode ierr; 46e5c89e4eSSatish Balay PetscMPIInt rank; 47e5c89e4eSSatish Balay FILE *fd; 48e5c89e4eSSatish Balay char fname[PETSC_MAX_PATH_LEN],tname[PETSC_MAX_PATH_LEN]; 49e5c89e4eSSatish Balay 50e5c89e4eSSatish Balay PetscFunctionBegin; 51e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 52e5c89e4eSSatish Balay if (!rank) { 53e5c89e4eSSatish Balay PetscTruth isstdout,isstderr; 54e5c89e4eSSatish Balay ierr = PetscStrcmp(name,"stdout",&isstdout);CHKERRQ(ierr); 55e5c89e4eSSatish Balay ierr = PetscStrcmp(name,"stderr",&isstderr);CHKERRQ(ierr); 56e5c89e4eSSatish Balay if (isstdout || !name) { 57*da9f1d6bSBarry Smith fd = PETSC_STDOUT; 58e5c89e4eSSatish Balay } else if (isstderr) { 59*da9f1d6bSBarry Smith fd = PETSC_STDERR; 60e5c89e4eSSatish Balay } else { 61e5c89e4eSSatish Balay ierr = PetscStrreplace(PETSC_COMM_SELF,name,tname,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 62e5c89e4eSSatish Balay ierr = PetscFixFilename(tname,fname);CHKERRQ(ierr); 63ae15b995SBarry Smith ierr = PetscInfo1(0,"Opening file %s\n",fname);CHKERRQ(ierr); 64e5c89e4eSSatish Balay fd = fopen(fname,mode); 65e5c89e4eSSatish Balay if (!fd) SETERRQ1(PETSC_ERR_FILE_OPEN,"Unable to open file %s\n",fname); 66e5c89e4eSSatish Balay } 67e5c89e4eSSatish Balay } else fd = 0; 68e5c89e4eSSatish Balay *fp = fd; 69e5c89e4eSSatish Balay PetscFunctionReturn(0); 70e5c89e4eSSatish Balay } 71e5c89e4eSSatish Balay 72e5c89e4eSSatish Balay #undef __FUNCT__ 73e5c89e4eSSatish Balay #define __FUNCT__ "PetscFClose" 74e30d2299SSatish Balay /*@ 75e5c89e4eSSatish Balay PetscFClose - Has the first processor in the communicator close a 76e5c89e4eSSatish Balay file; all others do nothing. 77e5c89e4eSSatish Balay 78e5c89e4eSSatish Balay Collective on MPI_Comm 79e5c89e4eSSatish Balay 80e5c89e4eSSatish Balay Input Parameters: 81e5c89e4eSSatish Balay + comm - the communicator 82e5c89e4eSSatish Balay - fd - the file, opened with PetscFOpen() 83e5c89e4eSSatish Balay 84e5c89e4eSSatish Balay Level: developer 85e5c89e4eSSatish Balay 86e5c89e4eSSatish Balay Fortran Note: 87e5c89e4eSSatish Balay This routine is not supported in Fortran. 88e5c89e4eSSatish Balay 89e5c89e4eSSatish Balay Concepts: files^closing ASCII 90e5c89e4eSSatish Balay Concepts: closing file 91e5c89e4eSSatish Balay 92e5c89e4eSSatish Balay .seealso: PetscFOpen() 93e5c89e4eSSatish Balay @*/ 94e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscFClose(MPI_Comm comm,FILE *fd) 95e5c89e4eSSatish Balay { 96e5c89e4eSSatish Balay PetscErrorCode ierr; 97e5c89e4eSSatish Balay PetscMPIInt rank; 98e5c89e4eSSatish Balay 99e5c89e4eSSatish Balay PetscFunctionBegin; 100e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 101*da9f1d6bSBarry Smith if (!rank && fd != PETSC_STDOUT && fd != PETSC_STDERR) fclose(fd); 102e5c89e4eSSatish Balay PetscFunctionReturn(0); 103e5c89e4eSSatish Balay } 104e5c89e4eSSatish Balay 105e5c89e4eSSatish Balay #if defined(PETSC_HAVE_POPEN) 106e5c89e4eSSatish Balay 107e5c89e4eSSatish Balay #undef __FUNCT__ 108e5c89e4eSSatish Balay #define __FUNCT__ "PetscPClose" 109e5c89e4eSSatish Balay /*@C 110e5c89e4eSSatish Balay PetscPClose - Closes (ends) a program on processor zero run with PetscPOpen() 111e5c89e4eSSatish Balay 112e5c89e4eSSatish Balay Collective on MPI_Comm, but only process 0 runs the command 113e5c89e4eSSatish Balay 114e5c89e4eSSatish Balay Input Parameters: 115e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 116e5c89e4eSSatish Balay - fp - the file pointer where program input or output may be read or PETSC_NULL if don't care 117e5c89e4eSSatish Balay 118e5c89e4eSSatish Balay Level: intermediate 119e5c89e4eSSatish Balay 120e5c89e4eSSatish Balay Notes: 121e5c89e4eSSatish Balay Does not work under Windows 122e5c89e4eSSatish Balay 123e5c89e4eSSatish Balay .seealso: PetscFOpen(), PetscFClose(), PetscPOpen() 124e5c89e4eSSatish Balay 125e5c89e4eSSatish Balay @*/ 126e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscPClose(MPI_Comm comm,FILE *fd) 127e5c89e4eSSatish Balay { 128e5c89e4eSSatish Balay PetscErrorCode ierr; 129e5c89e4eSSatish Balay PetscMPIInt rank; 130e5c89e4eSSatish Balay 131e5c89e4eSSatish Balay PetscFunctionBegin; 132e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 133e5c89e4eSSatish Balay if (!rank) { 134e5c89e4eSSatish Balay char buf[1024]; 135e5c89e4eSSatish Balay while (fgets(buf,1024,fd)) {;} /* wait till it prints everything */ 136e5c89e4eSSatish Balay pclose(fd); 137e5c89e4eSSatish Balay } 138e5c89e4eSSatish Balay PetscFunctionReturn(0); 139e5c89e4eSSatish Balay } 140e5c89e4eSSatish Balay 141e5c89e4eSSatish Balay 142e5c89e4eSSatish Balay #undef __FUNCT__ 143e5c89e4eSSatish Balay #define __FUNCT__ "PetscPOpen" 144e5c89e4eSSatish Balay /*@C 145e5c89e4eSSatish Balay PetscPOpen - Runs a program on processor zero and sends either its input or output to 146e5c89e4eSSatish Balay a file. 147e5c89e4eSSatish Balay 148e5c89e4eSSatish Balay Collective on MPI_Comm, but only process 0 runs the command 149e5c89e4eSSatish Balay 150e5c89e4eSSatish Balay Input Parameters: 151e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 152e5c89e4eSSatish Balay . machine - machine to run command on or PETSC_NULL, or string with 0 in first location 153e5c89e4eSSatish Balay . program - name of program to run 154e5c89e4eSSatish Balay - mode - either r or w 155e5c89e4eSSatish Balay 156e5c89e4eSSatish Balay Output Parameter: 157e5c89e4eSSatish Balay . fp - the file pointer where program input or output may be read or PETSC_NULL if don't care 158e5c89e4eSSatish Balay 159e5c89e4eSSatish Balay Level: intermediate 160e5c89e4eSSatish Balay 161e5c89e4eSSatish Balay Notes: 162e5c89e4eSSatish Balay Use PetscPClose() to close the file pointer when you are finished with it 163e5c89e4eSSatish Balay Does not work under Windows 164e5c89e4eSSatish Balay 165e5c89e4eSSatish Balay The program string may contain ${DISPLAY}, ${HOMEDIRECTORY} or ${WORKINGDIRECTORY}; these 166e5c89e4eSSatish Balay will be replaced with relevent values. 167e5c89e4eSSatish Balay 168e5c89e4eSSatish Balay .seealso: PetscFOpen(), PetscFClose(), PetscPClose() 169e5c89e4eSSatish Balay 170e5c89e4eSSatish Balay @*/ 171e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscPOpen(MPI_Comm comm,const char machine[],const char program[],const char mode[],FILE **fp) 172e5c89e4eSSatish Balay { 173e5c89e4eSSatish Balay PetscErrorCode ierr; 174e5c89e4eSSatish Balay PetscMPIInt rank; 175e5c89e4eSSatish Balay size_t i,len,cnt; 176e5c89e4eSSatish Balay char commandt[PETSC_MAX_PATH_LEN],command[PETSC_MAX_PATH_LEN]; 177e5c89e4eSSatish Balay FILE *fd; 178e5c89e4eSSatish Balay 179e5c89e4eSSatish Balay PetscFunctionBegin; 180e5c89e4eSSatish Balay 181e5c89e4eSSatish Balay /* all processors have to do the string manipulation because PetscStrreplace() is a collective operation */ 182e5c89e4eSSatish Balay if (machine && machine[0]) { 183e5c89e4eSSatish Balay ierr = PetscStrcpy(command,"ssh ");CHKERRQ(ierr); 184e5c89e4eSSatish Balay ierr = PetscStrcat(command,machine);CHKERRQ(ierr); 185e5c89e4eSSatish Balay ierr = PetscStrcat(command," \" setenv DISPLAY ${DISPLAY}; ");CHKERRQ(ierr); 186e5c89e4eSSatish Balay /* 187e5c89e4eSSatish Balay Copy program into command but protect the " with a \ in front of it 188e5c89e4eSSatish Balay */ 189e5c89e4eSSatish Balay ierr = PetscStrlen(command,&cnt);CHKERRQ(ierr); 190e5c89e4eSSatish Balay ierr = PetscStrlen(program,&len);CHKERRQ(ierr); 191e5c89e4eSSatish Balay for (i=0; i<len; i++) { 192e5c89e4eSSatish Balay if (program[i] == '\"') { 193e5c89e4eSSatish Balay command[cnt++] = '\\'; 194e5c89e4eSSatish Balay } 195e5c89e4eSSatish Balay command[cnt++] = program[i]; 196e5c89e4eSSatish Balay } 197e5c89e4eSSatish Balay command[cnt] = 0; 198e5c89e4eSSatish Balay ierr = PetscStrcat(command,"\"");CHKERRQ(ierr); 199e5c89e4eSSatish Balay } else { 200e5c89e4eSSatish Balay ierr = PetscStrcpy(command,program);CHKERRQ(ierr); 201e5c89e4eSSatish Balay } 202e5c89e4eSSatish Balay 203e5c89e4eSSatish Balay ierr = PetscStrreplace(comm,command,commandt,1024);CHKERRQ(ierr); 204e5c89e4eSSatish Balay 205e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 206e5c89e4eSSatish Balay if (!rank) { 207ae15b995SBarry Smith ierr = PetscInfo1(0,"Running command :%s\n",commandt);CHKERRQ(ierr); 208e5c89e4eSSatish Balay if (!(fd = popen(commandt,mode))) { 209e5c89e4eSSatish Balay SETERRQ1(PETSC_ERR_LIB,"Cannot run command %s",commandt); 210e5c89e4eSSatish Balay } 211e5c89e4eSSatish Balay if (fp) *fp = fd; 212e5c89e4eSSatish Balay } 213e5c89e4eSSatish Balay PetscFunctionReturn(0); 214e5c89e4eSSatish Balay } 215e5c89e4eSSatish Balay 216e5c89e4eSSatish Balay #endif 217