1e5c89e4eSSatish Balay #define PETSC_DLL 2e5c89e4eSSatish Balay /* 3e5c89e4eSSatish Balay Some PETSc utilites routines to add simple parallel IO capability 4e5c89e4eSSatish Balay */ 5d382aafbSBarry Smith #include "petscsys.h" 6e5c89e4eSSatish Balay #include <stdarg.h> 7e5c89e4eSSatish Balay #if defined(PETSC_HAVE_STDLIB_H) 8e5c89e4eSSatish Balay #include <stdlib.h> 9e5c89e4eSSatish Balay #endif 10e5c89e4eSSatish Balay 11e5c89e4eSSatish Balay #undef __FUNCT__ 12e5c89e4eSSatish Balay #define __FUNCT__ "PetscFOpen" 13e5c89e4eSSatish Balay /*@C 14e5c89e4eSSatish Balay PetscFOpen - Has the first process in the communicator open a file; 15e5c89e4eSSatish Balay all others do nothing. 16e5c89e4eSSatish Balay 17e5c89e4eSSatish Balay Collective on MPI_Comm 18e5c89e4eSSatish Balay 19e5c89e4eSSatish Balay Input Parameters: 20e5c89e4eSSatish Balay + comm - the communicator 21e5c89e4eSSatish Balay . name - the filename 22e5c89e4eSSatish Balay - mode - the mode for fopen(), usually "w" 23e5c89e4eSSatish Balay 24e5c89e4eSSatish Balay Output Parameter: 25e5c89e4eSSatish Balay . fp - the file pointer 26e5c89e4eSSatish Balay 27e5c89e4eSSatish Balay Level: developer 28e5c89e4eSSatish Balay 29e5c89e4eSSatish Balay Notes: 30e5c89e4eSSatish Balay PETSC_NULL (0), "stderr" or "stdout" may be passed in as the filename 31e5c89e4eSSatish Balay 32e5c89e4eSSatish Balay Fortran Note: 33e5c89e4eSSatish Balay This routine is not supported in Fortran. 34e5c89e4eSSatish Balay 35e5c89e4eSSatish Balay Concepts: opening ASCII file 36e5c89e4eSSatish Balay Concepts: files^opening ASCII 37e5c89e4eSSatish Balay 38d75a2efbSBarry Smith .seealso: PetscFClose(), PetscSynchronizedFGets(), PetscSynchronizedPrintf(), PetscSynchronizedFlush(), 39d75a2efbSBarry Smith PetscFPrintf() 40e5c89e4eSSatish Balay @*/ 41e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscFOpen(MPI_Comm comm,const char name[],const char mode[],FILE **fp) 42e5c89e4eSSatish Balay { 43e5c89e4eSSatish Balay PetscErrorCode ierr; 44e5c89e4eSSatish Balay PetscMPIInt rank; 45e5c89e4eSSatish Balay FILE *fd; 46e5c89e4eSSatish Balay char fname[PETSC_MAX_PATH_LEN],tname[PETSC_MAX_PATH_LEN]; 47e5c89e4eSSatish Balay 48e5c89e4eSSatish Balay PetscFunctionBegin; 49e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 50e5c89e4eSSatish Balay if (!rank) { 51e5c89e4eSSatish Balay PetscTruth isstdout,isstderr; 52e5c89e4eSSatish Balay ierr = PetscStrcmp(name,"stdout",&isstdout);CHKERRQ(ierr); 53e5c89e4eSSatish Balay ierr = PetscStrcmp(name,"stderr",&isstderr);CHKERRQ(ierr); 54e5c89e4eSSatish Balay if (isstdout || !name) { 55da9f1d6bSBarry Smith fd = PETSC_STDOUT; 56e5c89e4eSSatish Balay } else if (isstderr) { 57da9f1d6bSBarry Smith fd = PETSC_STDERR; 58e5c89e4eSSatish Balay } else { 59e5c89e4eSSatish Balay ierr = PetscStrreplace(PETSC_COMM_SELF,name,tname,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 60e5c89e4eSSatish Balay ierr = PetscFixFilename(tname,fname);CHKERRQ(ierr); 61ae15b995SBarry Smith ierr = PetscInfo1(0,"Opening file %s\n",fname);CHKERRQ(ierr); 62e5c89e4eSSatish Balay fd = fopen(fname,mode); 63*e32f2f54SBarry Smith if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Unable to open file %s\n",fname); 64e5c89e4eSSatish Balay } 65e5c89e4eSSatish Balay } else fd = 0; 66e5c89e4eSSatish Balay *fp = fd; 67e5c89e4eSSatish Balay PetscFunctionReturn(0); 68e5c89e4eSSatish Balay } 69e5c89e4eSSatish Balay 70e5c89e4eSSatish Balay #undef __FUNCT__ 71e5c89e4eSSatish Balay #define __FUNCT__ "PetscFClose" 72e30d2299SSatish Balay /*@ 73e5c89e4eSSatish Balay PetscFClose - Has the first processor in the communicator close a 74e5c89e4eSSatish Balay file; all others do nothing. 75e5c89e4eSSatish Balay 76e5c89e4eSSatish Balay Collective on MPI_Comm 77e5c89e4eSSatish Balay 78e5c89e4eSSatish Balay Input Parameters: 79e5c89e4eSSatish Balay + comm - the communicator 80e5c89e4eSSatish Balay - fd - the file, opened with PetscFOpen() 81e5c89e4eSSatish Balay 82e5c89e4eSSatish Balay Level: developer 83e5c89e4eSSatish Balay 84e5c89e4eSSatish Balay Fortran Note: 85e5c89e4eSSatish Balay This routine is not supported in Fortran. 86e5c89e4eSSatish Balay 87e5c89e4eSSatish Balay Concepts: files^closing ASCII 88e5c89e4eSSatish Balay Concepts: closing file 89e5c89e4eSSatish Balay 90e5c89e4eSSatish Balay .seealso: PetscFOpen() 91e5c89e4eSSatish Balay @*/ 92e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscFClose(MPI_Comm comm,FILE *fd) 93e5c89e4eSSatish Balay { 94e5c89e4eSSatish Balay PetscErrorCode ierr; 95e5c89e4eSSatish Balay PetscMPIInt rank; 96ed9cf6e9SBarry Smith int err; 97e5c89e4eSSatish Balay 98e5c89e4eSSatish Balay PetscFunctionBegin; 99e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 100ed9cf6e9SBarry Smith if (!rank && fd != PETSC_STDOUT && fd != PETSC_STDERR) { 101ed9cf6e9SBarry Smith err = fclose(fd); 102*e32f2f54SBarry Smith if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 103ed9cf6e9SBarry Smith } 104e5c89e4eSSatish Balay PetscFunctionReturn(0); 105e5c89e4eSSatish Balay } 106e5c89e4eSSatish Balay 107e5c89e4eSSatish Balay #if defined(PETSC_HAVE_POPEN) 108e5c89e4eSSatish Balay 109e5c89e4eSSatish Balay #undef __FUNCT__ 110e5c89e4eSSatish Balay #define __FUNCT__ "PetscPClose" 111e5c89e4eSSatish Balay /*@C 112e5c89e4eSSatish Balay PetscPClose - Closes (ends) a program on processor zero run with PetscPOpen() 113e5c89e4eSSatish Balay 114e5c89e4eSSatish Balay Collective on MPI_Comm, but only process 0 runs the command 115e5c89e4eSSatish Balay 116e5c89e4eSSatish Balay Input Parameters: 117e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 118e5c89e4eSSatish Balay - fp - the file pointer where program input or output may be read or PETSC_NULL if don't care 119e5c89e4eSSatish Balay 120e5c89e4eSSatish Balay Level: intermediate 121e5c89e4eSSatish Balay 122e5c89e4eSSatish Balay Notes: 123e5c89e4eSSatish Balay Does not work under Windows 124e5c89e4eSSatish Balay 125e5c89e4eSSatish Balay .seealso: PetscFOpen(), PetscFClose(), PetscPOpen() 126e5c89e4eSSatish Balay 127e5c89e4eSSatish Balay @*/ 128e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscPClose(MPI_Comm comm,FILE *fd) 129e5c89e4eSSatish Balay { 130e5c89e4eSSatish Balay PetscErrorCode ierr; 131e5c89e4eSSatish Balay PetscMPIInt rank; 132ed9cf6e9SBarry Smith int err; 133e5c89e4eSSatish Balay 134e5c89e4eSSatish Balay PetscFunctionBegin; 135e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 136e5c89e4eSSatish Balay if (!rank) { 137e5c89e4eSSatish Balay char buf[1024]; 138e5c89e4eSSatish Balay while (fgets(buf,1024,fd)) {;} /* wait till it prints everything */ 139ed9cf6e9SBarry Smith err = pclose(fd); 140*e32f2f54SBarry Smith if (err) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SYS,"pclose() failed on process %D",err); 141e5c89e4eSSatish Balay } 142e5c89e4eSSatish Balay PetscFunctionReturn(0); 143e5c89e4eSSatish Balay } 144e5c89e4eSSatish Balay 145e5c89e4eSSatish Balay 146e5c89e4eSSatish Balay #undef __FUNCT__ 147e5c89e4eSSatish Balay #define __FUNCT__ "PetscPOpen" 148e5c89e4eSSatish Balay /*@C 149e5c89e4eSSatish Balay PetscPOpen - Runs a program on processor zero and sends either its input or output to 150e5c89e4eSSatish Balay a file. 151e5c89e4eSSatish Balay 152e5c89e4eSSatish Balay Collective on MPI_Comm, but only process 0 runs the command 153e5c89e4eSSatish Balay 154e5c89e4eSSatish Balay Input Parameters: 155e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 156e5c89e4eSSatish Balay . machine - machine to run command on or PETSC_NULL, or string with 0 in first location 157e5c89e4eSSatish Balay . program - name of program to run 158e5c89e4eSSatish Balay - mode - either r or w 159e5c89e4eSSatish Balay 160e5c89e4eSSatish Balay Output Parameter: 161e5c89e4eSSatish Balay . fp - the file pointer where program input or output may be read or PETSC_NULL if don't care 162e5c89e4eSSatish Balay 163e5c89e4eSSatish Balay Level: intermediate 164e5c89e4eSSatish Balay 165e5c89e4eSSatish Balay Notes: 166e5c89e4eSSatish Balay Use PetscPClose() to close the file pointer when you are finished with it 167e5c89e4eSSatish Balay Does not work under Windows 168e5c89e4eSSatish Balay 169e5c89e4eSSatish Balay The program string may contain ${DISPLAY}, ${HOMEDIRECTORY} or ${WORKINGDIRECTORY}; these 170e5c89e4eSSatish Balay will be replaced with relevent values. 171e5c89e4eSSatish Balay 172e5c89e4eSSatish Balay .seealso: PetscFOpen(), PetscFClose(), PetscPClose() 173e5c89e4eSSatish Balay 174e5c89e4eSSatish Balay @*/ 175e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscPOpen(MPI_Comm comm,const char machine[],const char program[],const char mode[],FILE **fp) 176e5c89e4eSSatish Balay { 177e5c89e4eSSatish Balay PetscErrorCode ierr; 178e5c89e4eSSatish Balay PetscMPIInt rank; 179e5c89e4eSSatish Balay size_t i,len,cnt; 180e5c89e4eSSatish Balay char commandt[PETSC_MAX_PATH_LEN],command[PETSC_MAX_PATH_LEN]; 181e5c89e4eSSatish Balay FILE *fd; 182e5c89e4eSSatish Balay 183e5c89e4eSSatish Balay PetscFunctionBegin; 184e5c89e4eSSatish Balay 185e5c89e4eSSatish Balay /* all processors have to do the string manipulation because PetscStrreplace() is a collective operation */ 186e5c89e4eSSatish Balay if (machine && machine[0]) { 187e5c89e4eSSatish Balay ierr = PetscStrcpy(command,"ssh ");CHKERRQ(ierr); 188e5c89e4eSSatish Balay ierr = PetscStrcat(command,machine);CHKERRQ(ierr); 189e5c89e4eSSatish Balay ierr = PetscStrcat(command," \" setenv DISPLAY ${DISPLAY}; ");CHKERRQ(ierr); 190e5c89e4eSSatish Balay /* 191e5c89e4eSSatish Balay Copy program into command but protect the " with a \ in front of it 192e5c89e4eSSatish Balay */ 193e5c89e4eSSatish Balay ierr = PetscStrlen(command,&cnt);CHKERRQ(ierr); 194e5c89e4eSSatish Balay ierr = PetscStrlen(program,&len);CHKERRQ(ierr); 195e5c89e4eSSatish Balay for (i=0; i<len; i++) { 196e5c89e4eSSatish Balay if (program[i] == '\"') { 197e5c89e4eSSatish Balay command[cnt++] = '\\'; 198e5c89e4eSSatish Balay } 199e5c89e4eSSatish Balay command[cnt++] = program[i]; 200e5c89e4eSSatish Balay } 201e5c89e4eSSatish Balay command[cnt] = 0; 202e5c89e4eSSatish Balay ierr = PetscStrcat(command,"\"");CHKERRQ(ierr); 203e5c89e4eSSatish Balay } else { 204e5c89e4eSSatish Balay ierr = PetscStrcpy(command,program);CHKERRQ(ierr); 205e5c89e4eSSatish Balay } 206e5c89e4eSSatish Balay 207e5c89e4eSSatish Balay ierr = PetscStrreplace(comm,command,commandt,1024);CHKERRQ(ierr); 208e5c89e4eSSatish Balay 209e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 210e5c89e4eSSatish Balay if (!rank) { 211ae15b995SBarry Smith ierr = PetscInfo1(0,"Running command :%s\n",commandt);CHKERRQ(ierr); 212e5c89e4eSSatish Balay if (!(fd = popen(commandt,mode))) { 213*e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Cannot run command %s",commandt); 214e5c89e4eSSatish Balay } 215e5c89e4eSSatish Balay if (fp) *fp = fd; 216e5c89e4eSSatish Balay } 217e5c89e4eSSatish Balay PetscFunctionReturn(0); 218e5c89e4eSSatish Balay } 219e5c89e4eSSatish Balay 220e5c89e4eSSatish Balay #endif 221