1e5c89e4eSSatish Balay #define PETSC_DLL 2e5c89e4eSSatish Balay /* 3e5c89e4eSSatish Balay Some PETSc utilites routines to add simple parallel IO capability 4e5c89e4eSSatish Balay */ 5e5c89e4eSSatish Balay #include "petsc.h" 6e5c89e4eSSatish Balay #include "petscsys.h" 7e5c89e4eSSatish Balay #include <stdarg.h> 8e5c89e4eSSatish Balay #if defined(PETSC_HAVE_STDLIB_H) 9e5c89e4eSSatish Balay #include <stdlib.h> 10e5c89e4eSSatish Balay #endif 11e5c89e4eSSatish Balay #include "petscfix.h" 12e5c89e4eSSatish Balay 13e5c89e4eSSatish Balay #undef __FUNCT__ 14e5c89e4eSSatish Balay #define __FUNCT__ "PetscFOpen" 15e5c89e4eSSatish Balay /*@C 16e5c89e4eSSatish Balay PetscFOpen - Has the first process in the communicator open a file; 17e5c89e4eSSatish Balay all others do nothing. 18e5c89e4eSSatish Balay 19e5c89e4eSSatish Balay Collective on MPI_Comm 20e5c89e4eSSatish Balay 21e5c89e4eSSatish Balay Input Parameters: 22e5c89e4eSSatish Balay + comm - the communicator 23e5c89e4eSSatish Balay . name - the filename 24e5c89e4eSSatish Balay - mode - the mode for fopen(), usually "w" 25e5c89e4eSSatish Balay 26e5c89e4eSSatish Balay Output Parameter: 27e5c89e4eSSatish Balay . fp - the file pointer 28e5c89e4eSSatish Balay 29e5c89e4eSSatish Balay Level: developer 30e5c89e4eSSatish Balay 31e5c89e4eSSatish Balay Notes: 32e5c89e4eSSatish Balay PETSC_NULL (0), "stderr" or "stdout" may be passed in as the filename 33e5c89e4eSSatish Balay 34e5c89e4eSSatish Balay Fortran Note: 35e5c89e4eSSatish Balay This routine is not supported in Fortran. 36e5c89e4eSSatish Balay 37e5c89e4eSSatish Balay Concepts: opening ASCII file 38e5c89e4eSSatish Balay Concepts: files^opening ASCII 39e5c89e4eSSatish Balay 40d75a2efbSBarry Smith .seealso: PetscFClose(), PetscSynchronizedFGets(), PetscSynchronizedPrintf(), PetscSynchronizedFlush(), 41d75a2efbSBarry Smith PetscFPrintf() 42e5c89e4eSSatish Balay @*/ 43e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscFOpen(MPI_Comm comm,const char name[],const char mode[],FILE **fp) 44e5c89e4eSSatish Balay { 45e5c89e4eSSatish Balay PetscErrorCode ierr; 46e5c89e4eSSatish Balay PetscMPIInt rank; 47e5c89e4eSSatish Balay FILE *fd; 48e5c89e4eSSatish Balay char fname[PETSC_MAX_PATH_LEN],tname[PETSC_MAX_PATH_LEN]; 49e5c89e4eSSatish Balay 50e5c89e4eSSatish Balay PetscFunctionBegin; 51e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 52e5c89e4eSSatish Balay if (!rank) { 53e5c89e4eSSatish Balay PetscTruth isstdout,isstderr; 54e5c89e4eSSatish Balay ierr = PetscStrcmp(name,"stdout",&isstdout);CHKERRQ(ierr); 55e5c89e4eSSatish Balay ierr = PetscStrcmp(name,"stderr",&isstderr);CHKERRQ(ierr); 56e5c89e4eSSatish Balay if (isstdout || !name) { 57da9f1d6bSBarry Smith fd = PETSC_STDOUT; 58e5c89e4eSSatish Balay } else if (isstderr) { 59da9f1d6bSBarry Smith fd = PETSC_STDERR; 60e5c89e4eSSatish Balay } else { 61e5c89e4eSSatish Balay ierr = PetscStrreplace(PETSC_COMM_SELF,name,tname,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 62e5c89e4eSSatish Balay ierr = PetscFixFilename(tname,fname);CHKERRQ(ierr); 63ae15b995SBarry Smith ierr = PetscInfo1(0,"Opening file %s\n",fname);CHKERRQ(ierr); 64e5c89e4eSSatish Balay fd = fopen(fname,mode); 65e5c89e4eSSatish Balay if (!fd) SETERRQ1(PETSC_ERR_FILE_OPEN,"Unable to open file %s\n",fname); 66e5c89e4eSSatish Balay } 67e5c89e4eSSatish Balay } else fd = 0; 68e5c89e4eSSatish Balay *fp = fd; 69e5c89e4eSSatish Balay PetscFunctionReturn(0); 70e5c89e4eSSatish Balay } 71e5c89e4eSSatish Balay 72e5c89e4eSSatish Balay #undef __FUNCT__ 73e5c89e4eSSatish Balay #define __FUNCT__ "PetscFClose" 74e30d2299SSatish Balay /*@ 75e5c89e4eSSatish Balay PetscFClose - Has the first processor in the communicator close a 76e5c89e4eSSatish Balay file; all others do nothing. 77e5c89e4eSSatish Balay 78e5c89e4eSSatish Balay Collective on MPI_Comm 79e5c89e4eSSatish Balay 80e5c89e4eSSatish Balay Input Parameters: 81e5c89e4eSSatish Balay + comm - the communicator 82e5c89e4eSSatish Balay - fd - the file, opened with PetscFOpen() 83e5c89e4eSSatish Balay 84e5c89e4eSSatish Balay Level: developer 85e5c89e4eSSatish Balay 86e5c89e4eSSatish Balay Fortran Note: 87e5c89e4eSSatish Balay This routine is not supported in Fortran. 88e5c89e4eSSatish Balay 89e5c89e4eSSatish Balay Concepts: files^closing ASCII 90e5c89e4eSSatish Balay Concepts: closing file 91e5c89e4eSSatish Balay 92e5c89e4eSSatish Balay .seealso: PetscFOpen() 93e5c89e4eSSatish Balay @*/ 94e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscFClose(MPI_Comm comm,FILE *fd) 95e5c89e4eSSatish Balay { 96e5c89e4eSSatish Balay PetscErrorCode ierr; 97e5c89e4eSSatish Balay PetscMPIInt rank; 98*ed9cf6e9SBarry Smith int err; 99e5c89e4eSSatish Balay 100e5c89e4eSSatish Balay PetscFunctionBegin; 101e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 102*ed9cf6e9SBarry Smith if (!rank && fd != PETSC_STDOUT && fd != PETSC_STDERR) { 103*ed9cf6e9SBarry Smith err = fclose(fd); 104*ed9cf6e9SBarry Smith if (err) SETERRQ(PETSC_ERR_SYS,"fclose() failed on file"); 105*ed9cf6e9SBarry Smith } 106e5c89e4eSSatish Balay PetscFunctionReturn(0); 107e5c89e4eSSatish Balay } 108e5c89e4eSSatish Balay 109e5c89e4eSSatish Balay #if defined(PETSC_HAVE_POPEN) 110e5c89e4eSSatish Balay 111e5c89e4eSSatish Balay #undef __FUNCT__ 112e5c89e4eSSatish Balay #define __FUNCT__ "PetscPClose" 113e5c89e4eSSatish Balay /*@C 114e5c89e4eSSatish Balay PetscPClose - Closes (ends) a program on processor zero run with PetscPOpen() 115e5c89e4eSSatish Balay 116e5c89e4eSSatish Balay Collective on MPI_Comm, but only process 0 runs the command 117e5c89e4eSSatish Balay 118e5c89e4eSSatish Balay Input Parameters: 119e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 120e5c89e4eSSatish Balay - fp - the file pointer where program input or output may be read or PETSC_NULL if don't care 121e5c89e4eSSatish Balay 122e5c89e4eSSatish Balay Level: intermediate 123e5c89e4eSSatish Balay 124e5c89e4eSSatish Balay Notes: 125e5c89e4eSSatish Balay Does not work under Windows 126e5c89e4eSSatish Balay 127e5c89e4eSSatish Balay .seealso: PetscFOpen(), PetscFClose(), PetscPOpen() 128e5c89e4eSSatish Balay 129e5c89e4eSSatish Balay @*/ 130e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscPClose(MPI_Comm comm,FILE *fd) 131e5c89e4eSSatish Balay { 132e5c89e4eSSatish Balay PetscErrorCode ierr; 133e5c89e4eSSatish Balay PetscMPIInt rank; 134*ed9cf6e9SBarry Smith int err; 135e5c89e4eSSatish Balay 136e5c89e4eSSatish Balay PetscFunctionBegin; 137e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 138e5c89e4eSSatish Balay if (!rank) { 139e5c89e4eSSatish Balay char buf[1024]; 140e5c89e4eSSatish Balay while (fgets(buf,1024,fd)) {;} /* wait till it prints everything */ 141*ed9cf6e9SBarry Smith err = pclose(fd); 142*ed9cf6e9SBarry Smith if (err) SETERRQ(PETSC_ERR_SYS,"pclose() failed on process"); 143e5c89e4eSSatish Balay } 144e5c89e4eSSatish Balay PetscFunctionReturn(0); 145e5c89e4eSSatish Balay } 146e5c89e4eSSatish Balay 147e5c89e4eSSatish Balay 148e5c89e4eSSatish Balay #undef __FUNCT__ 149e5c89e4eSSatish Balay #define __FUNCT__ "PetscPOpen" 150e5c89e4eSSatish Balay /*@C 151e5c89e4eSSatish Balay PetscPOpen - Runs a program on processor zero and sends either its input or output to 152e5c89e4eSSatish Balay a file. 153e5c89e4eSSatish Balay 154e5c89e4eSSatish Balay Collective on MPI_Comm, but only process 0 runs the command 155e5c89e4eSSatish Balay 156e5c89e4eSSatish Balay Input Parameters: 157e5c89e4eSSatish Balay + comm - MPI communicator, only processor zero runs the program 158e5c89e4eSSatish Balay . machine - machine to run command on or PETSC_NULL, or string with 0 in first location 159e5c89e4eSSatish Balay . program - name of program to run 160e5c89e4eSSatish Balay - mode - either r or w 161e5c89e4eSSatish Balay 162e5c89e4eSSatish Balay Output Parameter: 163e5c89e4eSSatish Balay . fp - the file pointer where program input or output may be read or PETSC_NULL if don't care 164e5c89e4eSSatish Balay 165e5c89e4eSSatish Balay Level: intermediate 166e5c89e4eSSatish Balay 167e5c89e4eSSatish Balay Notes: 168e5c89e4eSSatish Balay Use PetscPClose() to close the file pointer when you are finished with it 169e5c89e4eSSatish Balay Does not work under Windows 170e5c89e4eSSatish Balay 171e5c89e4eSSatish Balay The program string may contain ${DISPLAY}, ${HOMEDIRECTORY} or ${WORKINGDIRECTORY}; these 172e5c89e4eSSatish Balay will be replaced with relevent values. 173e5c89e4eSSatish Balay 174e5c89e4eSSatish Balay .seealso: PetscFOpen(), PetscFClose(), PetscPClose() 175e5c89e4eSSatish Balay 176e5c89e4eSSatish Balay @*/ 177e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscPOpen(MPI_Comm comm,const char machine[],const char program[],const char mode[],FILE **fp) 178e5c89e4eSSatish Balay { 179e5c89e4eSSatish Balay PetscErrorCode ierr; 180e5c89e4eSSatish Balay PetscMPIInt rank; 181e5c89e4eSSatish Balay size_t i,len,cnt; 182e5c89e4eSSatish Balay char commandt[PETSC_MAX_PATH_LEN],command[PETSC_MAX_PATH_LEN]; 183e5c89e4eSSatish Balay FILE *fd; 184e5c89e4eSSatish Balay 185e5c89e4eSSatish Balay PetscFunctionBegin; 186e5c89e4eSSatish Balay 187e5c89e4eSSatish Balay /* all processors have to do the string manipulation because PetscStrreplace() is a collective operation */ 188e5c89e4eSSatish Balay if (machine && machine[0]) { 189e5c89e4eSSatish Balay ierr = PetscStrcpy(command,"ssh ");CHKERRQ(ierr); 190e5c89e4eSSatish Balay ierr = PetscStrcat(command,machine);CHKERRQ(ierr); 191e5c89e4eSSatish Balay ierr = PetscStrcat(command," \" setenv DISPLAY ${DISPLAY}; ");CHKERRQ(ierr); 192e5c89e4eSSatish Balay /* 193e5c89e4eSSatish Balay Copy program into command but protect the " with a \ in front of it 194e5c89e4eSSatish Balay */ 195e5c89e4eSSatish Balay ierr = PetscStrlen(command,&cnt);CHKERRQ(ierr); 196e5c89e4eSSatish Balay ierr = PetscStrlen(program,&len);CHKERRQ(ierr); 197e5c89e4eSSatish Balay for (i=0; i<len; i++) { 198e5c89e4eSSatish Balay if (program[i] == '\"') { 199e5c89e4eSSatish Balay command[cnt++] = '\\'; 200e5c89e4eSSatish Balay } 201e5c89e4eSSatish Balay command[cnt++] = program[i]; 202e5c89e4eSSatish Balay } 203e5c89e4eSSatish Balay command[cnt] = 0; 204e5c89e4eSSatish Balay ierr = PetscStrcat(command,"\"");CHKERRQ(ierr); 205e5c89e4eSSatish Balay } else { 206e5c89e4eSSatish Balay ierr = PetscStrcpy(command,program);CHKERRQ(ierr); 207e5c89e4eSSatish Balay } 208e5c89e4eSSatish Balay 209e5c89e4eSSatish Balay ierr = PetscStrreplace(comm,command,commandt,1024);CHKERRQ(ierr); 210e5c89e4eSSatish Balay 211e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 212e5c89e4eSSatish Balay if (!rank) { 213ae15b995SBarry Smith ierr = PetscInfo1(0,"Running command :%s\n",commandt);CHKERRQ(ierr); 214e5c89e4eSSatish Balay if (!(fd = popen(commandt,mode))) { 215e5c89e4eSSatish Balay SETERRQ1(PETSC_ERR_LIB,"Cannot run command %s",commandt); 216e5c89e4eSSatish Balay } 217e5c89e4eSSatish Balay if (fp) *fp = fd; 218e5c89e4eSSatish Balay } 219e5c89e4eSSatish Balay PetscFunctionReturn(0); 220e5c89e4eSSatish Balay } 221e5c89e4eSSatish Balay 222e5c89e4eSSatish Balay #endif 223