1e5c89e4eSSatish Balay #define PETSC_DLL 2e5c89e4eSSatish Balay 3e5c89e4eSSatish Balay /* 4e5c89e4eSSatish Balay This file contains simple binary read/write routines. 5e5c89e4eSSatish Balay */ 6e5c89e4eSSatish Balay 7e30d2299SSatish Balay #include "petsc.h" 8e30d2299SSatish Balay #include "petscsys.h" /*I "petscsys.h" I*/ 9e5c89e4eSSatish Balay 10e5c89e4eSSatish Balay #include <errno.h> 11e5c89e4eSSatish Balay #include <fcntl.h> 12e5c89e4eSSatish Balay #if defined(PETSC_HAVE_UNISTD_H) 13e5c89e4eSSatish Balay #include <unistd.h> 14e5c89e4eSSatish Balay #endif 15e5c89e4eSSatish Balay #if defined (PETSC_HAVE_IO_H) 16e5c89e4eSSatish Balay #include <io.h> 17e5c89e4eSSatish Balay #endif 18e5c89e4eSSatish Balay #include "petscbt.h" 19e5c89e4eSSatish Balay 20e5c89e4eSSatish Balay #if !defined(PETSC_WORDS_BIGENDIAN) 21e5c89e4eSSatish Balay 22*6de02169SBarry Smith /* --------------------------------------------------------- */ 23e5c89e4eSSatish Balay #undef __FUNCT__ 24*6de02169SBarry Smith #define __FUNCT__ "PetscByteSwapEnum" 25e5c89e4eSSatish Balay /* 26*6de02169SBarry Smith PetscByteSwapEnum - Swap bytes in a PETSc Enum 27e5c89e4eSSatish Balay 28e5c89e4eSSatish Balay */ 29*6de02169SBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscByteSwapEnum(PetscEnum *buff,PetscInt n) 30e5c89e4eSSatish Balay { 31*6de02169SBarry Smith PetscInt i,j; 32*6de02169SBarry Smith PetscEnum tmp = 0; 33*6de02169SBarry Smith PetscEnum *tptr = &tmp; /* Need to access tmp indirectly to get */ 34e5c89e4eSSatish Balay char *ptr1,*ptr2 = (char*)&tmp; /* arround the bug in DEC-ALPHA g++ */ 35e5c89e4eSSatish Balay 36e5c89e4eSSatish Balay PetscFunctionBegin; 37e5c89e4eSSatish Balay for (j=0; j<n; j++) { 38e5c89e4eSSatish Balay ptr1 = (char*)(buff + j); 39*6de02169SBarry Smith for (i=0; i<(int)sizeof(PetscEnum); i++) { 40*6de02169SBarry Smith ptr2[i] = ptr1[sizeof(PetscEnum)-1-i]; 41e5c89e4eSSatish Balay } 42e5c89e4eSSatish Balay buff[j] = *tptr; 43e5c89e4eSSatish Balay } 44e5c89e4eSSatish Balay PetscFunctionReturn(0); 45e5c89e4eSSatish Balay } 46*6de02169SBarry Smith 47*6de02169SBarry Smith #undef __FUNCT__ 48*6de02169SBarry Smith #define __FUNCT__ "PetscByteSwapTruth" 49*6de02169SBarry Smith /* 50*6de02169SBarry Smith PetscByteSwapTruth - Swap bytes in a PETSc Truth 51*6de02169SBarry Smith 52*6de02169SBarry Smith */ 53*6de02169SBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscByteSwapTruth(PetscTruth *buff,PetscInt n) 54*6de02169SBarry Smith { 55*6de02169SBarry Smith PetscInt i,j; 56*6de02169SBarry Smith PetscTruth tmp = 0; 57*6de02169SBarry Smith PetscTruth *tptr = &tmp; /* Need to access tmp indirectly to get */ 58*6de02169SBarry Smith char *ptr1,*ptr2 = (char*)&tmp; /* arround the bug in DEC-ALPHA g++ */ 59*6de02169SBarry Smith 60*6de02169SBarry Smith PetscFunctionBegin; 61*6de02169SBarry Smith for (j=0; j<n; j++) { 62*6de02169SBarry Smith ptr1 = (char*)(buff + j); 63*6de02169SBarry Smith for (i=0; i<(int)sizeof(PetscTruth); i++) { 64*6de02169SBarry Smith ptr2[i] = ptr1[sizeof(PetscTruth)-1-i]; 65*6de02169SBarry Smith } 66*6de02169SBarry Smith buff[j] = *tptr; 67*6de02169SBarry Smith } 68*6de02169SBarry Smith PetscFunctionReturn(0); 69*6de02169SBarry Smith } 70*6de02169SBarry Smith 71e5c89e4eSSatish Balay #undef __FUNCT__ 72bd1d2e58SBarry Smith #define __FUNCT__ "PetscByteSwapInt" 73bd1d2e58SBarry Smith /* 74*6de02169SBarry Smith PetscByteSwapInt - Swap bytes in a PETSc integer (which may be 32 or 64 bits) 75bd1d2e58SBarry Smith 76bd1d2e58SBarry Smith */ 77*6de02169SBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscByteSwapInt(PetscInt *buff,PetscInt n) 78bd1d2e58SBarry Smith { 79bd1d2e58SBarry Smith PetscInt i,j,tmp = 0; 80bd1d2e58SBarry Smith PetscInt *tptr = &tmp; /* Need to access tmp indirectly to get */ 81bd1d2e58SBarry Smith char *ptr1,*ptr2 = (char*)&tmp; /* arround the bug in DEC-ALPHA g++ */ 82bd1d2e58SBarry Smith 83bd1d2e58SBarry Smith PetscFunctionBegin; 84bd1d2e58SBarry Smith for (j=0; j<n; j++) { 85bd1d2e58SBarry Smith ptr1 = (char*)(buff + j); 86bd1d2e58SBarry Smith for (i=0; i<(int)sizeof(PetscInt); i++) { 87bd1d2e58SBarry Smith ptr2[i] = ptr1[sizeof(PetscInt)-1-i]; 88bd1d2e58SBarry Smith } 89bd1d2e58SBarry Smith buff[j] = *tptr; 90bd1d2e58SBarry Smith } 91bd1d2e58SBarry Smith PetscFunctionReturn(0); 92bd1d2e58SBarry Smith } 93bd1d2e58SBarry Smith /* --------------------------------------------------------- */ 94bd1d2e58SBarry Smith #undef __FUNCT__ 95e5c89e4eSSatish Balay #define __FUNCT__ "PetscByteSwapShort" 96e5c89e4eSSatish Balay /* 97e5c89e4eSSatish Balay PetscByteSwapShort - Swap bytes in a short 98e5c89e4eSSatish Balay */ 99e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscByteSwapShort(short *buff,PetscInt n) 100e5c89e4eSSatish Balay { 101e5c89e4eSSatish Balay PetscInt i,j; 102e5c89e4eSSatish Balay short tmp; 103e5c89e4eSSatish Balay short *tptr = &tmp; /* take care pf bug in DEC-ALPHA g++ */ 104e5c89e4eSSatish Balay char *ptr1,*ptr2 = (char*)&tmp; 105e5c89e4eSSatish Balay 106e5c89e4eSSatish Balay PetscFunctionBegin; 107e5c89e4eSSatish Balay for (j=0; j<n; j++) { 108e5c89e4eSSatish Balay ptr1 = (char*)(buff + j); 109e5c89e4eSSatish Balay for (i=0; i<(int) sizeof(short); i++) { 110e5c89e4eSSatish Balay ptr2[i] = ptr1[sizeof(int)-1-i]; 111e5c89e4eSSatish Balay } 112e5c89e4eSSatish Balay buff[j] = *tptr; 113e5c89e4eSSatish Balay } 114e5c89e4eSSatish Balay PetscFunctionReturn(0); 115e5c89e4eSSatish Balay } 116e5c89e4eSSatish Balay /* --------------------------------------------------------- */ 117e5c89e4eSSatish Balay #undef __FUNCT__ 118e5c89e4eSSatish Balay #define __FUNCT__ "PetscByteSwapScalar" 119e5c89e4eSSatish Balay /* 120e5c89e4eSSatish Balay PetscByteSwapScalar - Swap bytes in a double 121e5c89e4eSSatish Balay Complex is dealt with as if array of double twice as long. 122e5c89e4eSSatish Balay */ 123e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscByteSwapScalar(PetscScalar *buff,PetscInt n) 124e5c89e4eSSatish Balay { 125e5c89e4eSSatish Balay PetscInt i,j; 126e5c89e4eSSatish Balay PetscReal tmp,*buff1 = (PetscReal*)buff; 127e5c89e4eSSatish Balay PetscReal *tptr = &tmp; /* take care pf bug in DEC-ALPHA g++ */ 128e5c89e4eSSatish Balay char *ptr1,*ptr2 = (char*)&tmp; 129e5c89e4eSSatish Balay 130e5c89e4eSSatish Balay PetscFunctionBegin; 131e5c89e4eSSatish Balay #if defined(PETSC_USE_COMPLEX) 132e5c89e4eSSatish Balay n *= 2; 133e5c89e4eSSatish Balay #endif 134e5c89e4eSSatish Balay for (j=0; j<n; j++) { 135e5c89e4eSSatish Balay ptr1 = (char*)(buff1 + j); 136e5c89e4eSSatish Balay for (i=0; i<(int) sizeof(PetscReal); i++) { 137e5c89e4eSSatish Balay ptr2[i] = ptr1[sizeof(PetscReal)-1-i]; 138e5c89e4eSSatish Balay } 139e5c89e4eSSatish Balay buff1[j] = *tptr; 140e5c89e4eSSatish Balay } 141e5c89e4eSSatish Balay PetscFunctionReturn(0); 142e5c89e4eSSatish Balay } 143e5c89e4eSSatish Balay /* --------------------------------------------------------- */ 144e5c89e4eSSatish Balay #undef __FUNCT__ 145e5c89e4eSSatish Balay #define __FUNCT__ "PetscByteSwapDouble" 146e5c89e4eSSatish Balay /* 147e5c89e4eSSatish Balay PetscByteSwapDouble - Swap bytes in a double 148e5c89e4eSSatish Balay */ 149e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscByteSwapDouble(double *buff,PetscInt n) 150e5c89e4eSSatish Balay { 151e5c89e4eSSatish Balay PetscInt i,j; 152e5c89e4eSSatish Balay double tmp,*buff1 = (double*)buff; 153e5c89e4eSSatish Balay double *tptr = &tmp; /* take care pf bug in DEC-ALPHA g++ */ 154e5c89e4eSSatish Balay char *ptr1,*ptr2 = (char*)&tmp; 155e5c89e4eSSatish Balay 156e5c89e4eSSatish Balay PetscFunctionBegin; 157e5c89e4eSSatish Balay for (j=0; j<n; j++) { 158e5c89e4eSSatish Balay ptr1 = (char*)(buff1 + j); 159e5c89e4eSSatish Balay for (i=0; i<(int) sizeof(double); i++) { 160e5c89e4eSSatish Balay ptr2[i] = ptr1[sizeof(double)-1-i]; 161e5c89e4eSSatish Balay } 162e5c89e4eSSatish Balay buff1[j] = *tptr; 163e5c89e4eSSatish Balay } 164e5c89e4eSSatish Balay PetscFunctionReturn(0); 165e5c89e4eSSatish Balay } 166e5c89e4eSSatish Balay #endif 167e5c89e4eSSatish Balay /* --------------------------------------------------------- */ 168e5c89e4eSSatish Balay #undef __FUNCT__ 169e5c89e4eSSatish Balay #define __FUNCT__ "PetscBinaryRead" 170e30d2299SSatish Balay /*@ 171e5c89e4eSSatish Balay PetscBinaryRead - Reads from a binary file. 172e5c89e4eSSatish Balay 173e5c89e4eSSatish Balay Not Collective 174e5c89e4eSSatish Balay 175e5c89e4eSSatish Balay Input Parameters: 176e5c89e4eSSatish Balay + fd - the file 177e5c89e4eSSatish Balay . n - the number of items to read 178e5c89e4eSSatish Balay - type - the type of items to read (PETSC_INT, PETSC_DOUBLE or PETSC_SCALAR) 179e5c89e4eSSatish Balay 180e5c89e4eSSatish Balay Output Parameters: 181e5c89e4eSSatish Balay . p - the buffer 182e5c89e4eSSatish Balay 183e5c89e4eSSatish Balay 184e5c89e4eSSatish Balay 185e5c89e4eSSatish Balay Level: developer 186e5c89e4eSSatish Balay 187e5c89e4eSSatish Balay Notes: 188e5c89e4eSSatish Balay PetscBinaryRead() uses byte swapping to work on all machines; the files 189e5c89e4eSSatish Balay are written to file ALWAYS using big-endian ordering. On small-endian machines the numbers 190e5c89e4eSSatish Balay are converted to the small-endian format when they are read in from the file. 191e5c89e4eSSatish Balay Integers are stored on the file as 32 bits long, regardless of whether 192e5c89e4eSSatish Balay they are stored in the machine as 32 bits or 64 bits, this means the same 193e5c89e4eSSatish Balay binary file may be read on any machine. 194e5c89e4eSSatish Balay 195e5c89e4eSSatish Balay Concepts: files^reading binary 196e5c89e4eSSatish Balay Concepts: binary files^reading 197e5c89e4eSSatish Balay 1984ebed01fSBarry Smith .seealso: PetscBinaryWrite(), PetscBinaryOpen(), PetscBinaryClose(), PetscViewerBinaryGetDescriptor(), PetscBinarySynchronizedWrite(), 1994ebed01fSBarry Smith PetscBinarySynchronizedRead(), PetscBinarySynchronizedSeek() 200e5c89e4eSSatish Balay @*/ 201e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscBinaryRead(int fd,void *p,PetscInt n,PetscDataType type) 202e5c89e4eSSatish Balay { 203e5c89e4eSSatish Balay int wsize,err; 204e5c89e4eSSatish Balay size_t m = (size_t) n,maxblock = 65536; 205e5c89e4eSSatish Balay char *pp = (char*)p; 206*6de02169SBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 207*6de02169SBarry Smith PetscErrorCode ierr; 208e5c89e4eSSatish Balay void *ptmp = p; 209e5c89e4eSSatish Balay #endif 210e5c89e4eSSatish Balay 211e5c89e4eSSatish Balay PetscFunctionBegin; 212e5c89e4eSSatish Balay if (!n) PetscFunctionReturn(0); 213e5c89e4eSSatish Balay 214*6de02169SBarry Smith if (type == PETSC_INT) m *= sizeof(PetscInt); 215e5c89e4eSSatish Balay else if (type == PETSC_SCALAR) m *= sizeof(PetscScalar); 216e5c89e4eSSatish Balay else if (type == PETSC_DOUBLE) m *= sizeof(double); 217e5c89e4eSSatish Balay else if (type == PETSC_SHORT) m *= sizeof(short); 218e5c89e4eSSatish Balay else if (type == PETSC_CHAR) m *= sizeof(char); 219e5c89e4eSSatish Balay else if (type == PETSC_ENUM) m *= sizeof(PetscEnum); 220e5c89e4eSSatish Balay else if (type == PETSC_TRUTH) m *= sizeof(PetscTruth); 221e5c89e4eSSatish Balay else if (type == PETSC_LOGICAL) m = PetscBTLength(m)*sizeof(char); 222e5c89e4eSSatish Balay else SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Unknown type"); 223e5c89e4eSSatish Balay 224e5c89e4eSSatish Balay while (m) { 225e5c89e4eSSatish Balay wsize = (m < maxblock) ? m : maxblock; 226e5c89e4eSSatish Balay err = read(fd,pp,wsize); 227e5c89e4eSSatish Balay if (err < 0 && errno == EINTR) continue; 228e5c89e4eSSatish Balay if (!err && wsize > 0) SETERRQ(PETSC_ERR_FILE_READ,"Read past end of file"); 229a1f04975SBarry Smith if (err < 0) SETERRQ1(PETSC_ERR_FILE_READ,"Error reading from file, errno %d",errno); 230e5c89e4eSSatish Balay m -= err; 231e5c89e4eSSatish Balay pp += err; 232e5c89e4eSSatish Balay } 233e5c89e4eSSatish Balay #if !defined(PETSC_WORDS_BIGENDIAN) 234*6de02169SBarry Smith if (type == PETSC_INT) {ierr = PetscByteSwapInt((PetscInt*)ptmp,n);CHKERRQ(ierr);} 235*6de02169SBarry Smith else if (type == PETSC_ENUM) {ierr = PetscByteSwapEnum((PetscEnum*)ptmp,n);CHKERRQ(ierr);} 236*6de02169SBarry Smith else if (type == PETSC_TRUTH) {ierr = PetscByteSwapTruth((PetscTruth*)ptmp,n);CHKERRQ(ierr);} 237e5c89e4eSSatish Balay else if (type == PETSC_SCALAR) {ierr = PetscByteSwapScalar((PetscScalar*)ptmp,n);CHKERRQ(ierr);} 238e5c89e4eSSatish Balay else if (type == PETSC_DOUBLE) {ierr = PetscByteSwapDouble((double*)ptmp,n);CHKERRQ(ierr);} 239e5c89e4eSSatish Balay else if (type == PETSC_SHORT) {ierr = PetscByteSwapShort((short*)ptmp,n);CHKERRQ(ierr);} 240e5c89e4eSSatish Balay #endif 241e5c89e4eSSatish Balay 242e5c89e4eSSatish Balay PetscFunctionReturn(0); 243e5c89e4eSSatish Balay } 244e5c89e4eSSatish Balay /* --------------------------------------------------------- */ 245e5c89e4eSSatish Balay #undef __FUNCT__ 246e5c89e4eSSatish Balay #define __FUNCT__ "PetscBinaryWrite" 247e30d2299SSatish Balay /*@ 248e5c89e4eSSatish Balay PetscBinaryWrite - Writes to a binary file. 249e5c89e4eSSatish Balay 250e5c89e4eSSatish Balay Not Collective 251e5c89e4eSSatish Balay 252e5c89e4eSSatish Balay Input Parameters: 253e5c89e4eSSatish Balay + fd - the file 254e5c89e4eSSatish Balay . p - the buffer 255e5c89e4eSSatish Balay . n - the number of items to write 256e5c89e4eSSatish Balay . type - the type of items to read (PETSC_INT, PETSC_DOUBLE or PETSC_SCALAR) 257e5c89e4eSSatish Balay - istemp - PETSC_FALSE if buffer data should be preserved, PETSC_TRUE otherwise. 258e5c89e4eSSatish Balay 259e5c89e4eSSatish Balay Level: advanced 260e5c89e4eSSatish Balay 261e5c89e4eSSatish Balay Notes: 262e5c89e4eSSatish Balay PetscBinaryWrite() uses byte swapping to work on all machines; the files 263e5c89e4eSSatish Balay are written using big-endian ordering to the file. On small-endian machines the numbers 264e5c89e4eSSatish Balay are converted to the big-endian format when they are written to disk. 265e5c89e4eSSatish Balay Integers are stored on the file as 32 bits long, regardless of whether 266e5c89e4eSSatish Balay they are stored in the machine as 32 bits or 64 bits, this means the same 267e5c89e4eSSatish Balay binary file may be read on any machine. It also means that 64 bit integers larger than 268e5c89e4eSSatish Balay roughly 2 billion are TRUNCATED/WRONG when written to the file. 269e5c89e4eSSatish Balay 270e5c89e4eSSatish Balay The Buffer p should be read-write buffer, and not static data. 271e5c89e4eSSatish Balay This way, byte-swapping is done in-place, and then the buffer is 272e5c89e4eSSatish Balay written to the file. 273e5c89e4eSSatish Balay 274e5c89e4eSSatish Balay This routine restores the original contents of the buffer, after 275e5c89e4eSSatish Balay it is written to the file. This is done by byte-swapping in-place 276e5c89e4eSSatish Balay the second time. If the flag istemp is set to PETSC_TRUE, the second 277e5c89e4eSSatish Balay byte-swapping operation is not done, thus saving some computation, 278e5c89e4eSSatish Balay but the buffer corrupted is corrupted. 279e5c89e4eSSatish Balay 280e5c89e4eSSatish Balay Concepts: files^writing binary 281e5c89e4eSSatish Balay Concepts: binary files^writing 282e5c89e4eSSatish Balay 2834ebed01fSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryOpen(), PetscBinaryClose(), PetscViewerBinaryGetDescriptor(), PetscBinarySynchronizedWrite(), 2844ebed01fSBarry Smith PetscBinarySynchronizedRead(), PetscBinarySynchronizedSeek() 285e5c89e4eSSatish Balay @*/ 286e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscBinaryWrite(int fd,void *p,PetscInt n,PetscDataType type,PetscTruth istemp) 287e5c89e4eSSatish Balay { 288e5c89e4eSSatish Balay char *pp = (char*)p; 289e5c89e4eSSatish Balay int err,wsize; 290e5c89e4eSSatish Balay size_t m = (size_t)n,maxblock=65536; 291*6de02169SBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 292e5c89e4eSSatish Balay PetscErrorCode ierr; 293e5c89e4eSSatish Balay void *ptmp = p; 294e5c89e4eSSatish Balay #endif 295e5c89e4eSSatish Balay 296e5c89e4eSSatish Balay PetscFunctionBegin; 297e5c89e4eSSatish Balay if (n < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Trying to write a negative amount of data %D",n); 298e5c89e4eSSatish Balay if (!n) PetscFunctionReturn(0); 299e5c89e4eSSatish Balay 300*6de02169SBarry Smith if (type == PETSC_INT) m *= sizeof(PetscInt); 301e5c89e4eSSatish Balay else if (type == PETSC_SCALAR) m *= sizeof(PetscScalar); 302e5c89e4eSSatish Balay else if (type == PETSC_DOUBLE) m *= sizeof(double); 303e5c89e4eSSatish Balay else if (type == PETSC_SHORT) m *= sizeof(short); 304e5c89e4eSSatish Balay else if (type == PETSC_CHAR) m *= sizeof(char); 305e5c89e4eSSatish Balay else if (type == PETSC_ENUM) m *= sizeof(PetscEnum); 306e5c89e4eSSatish Balay else if (type == PETSC_TRUTH) m *= sizeof(PetscTruth); 307e5c89e4eSSatish Balay else if (type == PETSC_LOGICAL) m = PetscBTLength(m)*sizeof(char); 308e5c89e4eSSatish Balay else SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Unknown type"); 309e5c89e4eSSatish Balay 310e5c89e4eSSatish Balay #if !defined(PETSC_WORDS_BIGENDIAN) 311*6de02169SBarry Smith if (type == PETSC_INT) {ierr = PetscByteSwapInt((PetscInt*)ptmp,n);CHKERRQ(ierr);} 312*6de02169SBarry Smith else if (type == PETSC_ENUM) {ierr = PetscByteSwapEnum((PetscEnum*)ptmp,n);CHKERRQ(ierr);} 313*6de02169SBarry Smith else if (type == PETSC_TRUTH) {ierr = PetscByteSwapTruth((PetscTruth*)ptmp,n);CHKERRQ(ierr);} 314e5c89e4eSSatish Balay else if (type == PETSC_SCALAR) {ierr = PetscByteSwapScalar((PetscScalar*)ptmp,n);CHKERRQ(ierr);} 315e5c89e4eSSatish Balay else if (type == PETSC_DOUBLE) {ierr = PetscByteSwapDouble((double*)ptmp,n);CHKERRQ(ierr);} 316e5c89e4eSSatish Balay else if (type == PETSC_SHORT) {ierr = PetscByteSwapShort((short*)ptmp,n);CHKERRQ(ierr);} 317e5c89e4eSSatish Balay #endif 318e5c89e4eSSatish Balay 319e5c89e4eSSatish Balay while (m) { 320e5c89e4eSSatish Balay wsize = (m < maxblock) ? m : maxblock; 321e5c89e4eSSatish Balay err = write(fd,pp,wsize); 322e5c89e4eSSatish Balay if (err < 0 && errno == EINTR) continue; 323e5c89e4eSSatish Balay if (err != wsize) SETERRQ(PETSC_ERR_FILE_WRITE,"Error writing to file."); 324e5c89e4eSSatish Balay m -= wsize; 325e5c89e4eSSatish Balay pp += wsize; 326e5c89e4eSSatish Balay } 327e5c89e4eSSatish Balay 328b659c0ceSSatish Balay #if !defined(PETSC_WORDS_BIGENDIAN) 329e5c89e4eSSatish Balay if (!istemp) { 330*6de02169SBarry Smith if (type == PETSC_INT) {ierr = PetscByteSwapInt((PetscInt*)ptmp,n);CHKERRQ(ierr);} 331*6de02169SBarry Smith else if (type == PETSC_SCALAR) {ierr = PetscByteSwapScalar((PetscScalar*)ptmp,n);CHKERRQ(ierr);} 332b63245c5SSatish Balay else if (type == PETSC_DOUBLE) {ierr = PetscByteSwapDouble((double*)ptmp,n);CHKERRQ(ierr);} 333e5c89e4eSSatish Balay else if (type == PETSC_SHORT) {ierr = PetscByteSwapShort((short*)ptmp,n);CHKERRQ(ierr);} 334*6de02169SBarry Smith else if (type == PETSC_ENUM) {ierr = PetscByteSwapEnum((PetscEnum*)ptmp,n);CHKERRQ(ierr);} 335*6de02169SBarry Smith else if (type == PETSC_TRUTH) {ierr = PetscByteSwapTruth((PetscTruth*)ptmp,n);CHKERRQ(ierr);} 336e5c89e4eSSatish Balay } 337e5c89e4eSSatish Balay #endif 338e5c89e4eSSatish Balay PetscFunctionReturn(0); 339e5c89e4eSSatish Balay } 340e5c89e4eSSatish Balay 341e5c89e4eSSatish Balay #undef __FUNCT__ 342e5c89e4eSSatish Balay #define __FUNCT__ "PetscBinaryOpen" 343e5c89e4eSSatish Balay /*@C 344e5c89e4eSSatish Balay PetscBinaryOpen - Opens a PETSc binary file. 345e5c89e4eSSatish Balay 346e5c89e4eSSatish Balay Not Collective 347e5c89e4eSSatish Balay 348e5c89e4eSSatish Balay Input Parameters: 349e5c89e4eSSatish Balay + name - filename 35045c64e65SBarry Smith - type - type of binary file, one of FILE_MODE_READ, FILE_MODE_APPEND, FILE_MODE_WRITE 351e5c89e4eSSatish Balay 352e5c89e4eSSatish Balay Output Parameter: 353e5c89e4eSSatish Balay . fd - the file 354e5c89e4eSSatish Balay 355e5c89e4eSSatish Balay Level: advanced 356e5c89e4eSSatish Balay 357e5c89e4eSSatish Balay Concepts: files^opening binary 358e5c89e4eSSatish Balay Concepts: binary files^opening 359e5c89e4eSSatish Balay 360e5c89e4eSSatish Balay Notes: Files access with PetscBinaryRead() and PetscBinaryWrite() are ALWAYS written in 361e5c89e4eSSatish Balay big-endian format. This means the file can be accessed using PetscBinaryOpen() and 362e5c89e4eSSatish Balay PetscBinaryRead() and PetscBinaryWrite() on any machine. 363e5c89e4eSSatish Balay 3644ebed01fSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscFileMode, PetscViewerFileSetMode(), PetscViewerBinaryGetDescriptor(), 3654ebed01fSBarry Smith PetscBinarySynchronizedWrite(), PetscBinarySynchronizedRead(), PetscBinarySynchronizedSeek() 36645c64e65SBarry Smith 367e5c89e4eSSatish Balay @*/ 36845c64e65SBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscBinaryOpen(const char name[],PetscFileMode mode,int *fd) 369e5c89e4eSSatish Balay { 370e5c89e4eSSatish Balay PetscFunctionBegin; 371e5c89e4eSSatish Balay #if defined(PETSC_HAVE_O_BINARY) 37245c64e65SBarry Smith if (mode == FILE_MODE_WRITE) { 373e5c89e4eSSatish Balay if ((*fd = open(name,O_WRONLY|O_CREAT|O_TRUNC|O_BINARY,0666)) == -1) { 374e5c89e4eSSatish Balay SETERRQ1(PETSC_ERR_FILE_OPEN,"Cannot create file for writing: %s",name); 375e5c89e4eSSatish Balay } 37645c64e65SBarry Smith } else if (mode == FILE_MODE_READ) { 377e5c89e4eSSatish Balay if ((*fd = open(name,O_RDONLY|O_BINARY,0)) == -1) { 378e5c89e4eSSatish Balay SETERRQ1(PETSC_ERR_FILE_OPEN,"Cannot open file for reading: %s",name); 379e5c89e4eSSatish Balay } 38045c64e65SBarry Smith } else if (mode == FILE_MODE_APPEND) { 381e5c89e4eSSatish Balay if ((*fd = open(name,O_WRONLY|O_BINARY,0)) == -1) { 382e5c89e4eSSatish Balay SETERRQ1(PETSC_ERR_FILE_OPEN,"Cannot open file for writing: %s",name); 383e5c89e4eSSatish Balay } 384e5c89e4eSSatish Balay #else 38545c64e65SBarry Smith if (mode == FILE_MODE_WRITE) { 386e5c89e4eSSatish Balay if ((*fd = creat(name,0666)) == -1) { 387e5c89e4eSSatish Balay SETERRQ1(PETSC_ERR_FILE_OPEN,"Cannot create file for writing: %s",name); 388e5c89e4eSSatish Balay } 38945c64e65SBarry Smith } else if (mode == FILE_MODE_READ) { 390e5c89e4eSSatish Balay if ((*fd = open(name,O_RDONLY,0)) == -1) { 391e5c89e4eSSatish Balay SETERRQ1(PETSC_ERR_FILE_OPEN,"Cannot open file for reading: %s",name); 392e5c89e4eSSatish Balay } 393e5c89e4eSSatish Balay } 39445c64e65SBarry Smith else if (mode == FILE_MODE_APPEND) { 395e5c89e4eSSatish Balay if ((*fd = open(name,O_WRONLY,0)) == -1) { 396e5c89e4eSSatish Balay SETERRQ1(PETSC_ERR_FILE_OPEN,"Cannot open file for writing: %s",name); 397e5c89e4eSSatish Balay } 398e5c89e4eSSatish Balay #endif 39945c64e65SBarry Smith } else SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Unknown file mode"); 400e5c89e4eSSatish Balay PetscFunctionReturn(0); 401e5c89e4eSSatish Balay } 402e5c89e4eSSatish Balay 403e5c89e4eSSatish Balay #undef __FUNCT__ 404e5c89e4eSSatish Balay #define __FUNCT__ "PetscBinaryClose" 405e30d2299SSatish Balay /*@ 406e5c89e4eSSatish Balay PetscBinaryClose - Closes a PETSc binary file. 407e5c89e4eSSatish Balay 408e5c89e4eSSatish Balay Not Collective 409e5c89e4eSSatish Balay 410e5c89e4eSSatish Balay Output Parameter: 411e5c89e4eSSatish Balay . fd - the file 412e5c89e4eSSatish Balay 413e5c89e4eSSatish Balay Level: advanced 414e5c89e4eSSatish Balay 4154ebed01fSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscBinaryOpen(), PetscBinarySynchronizedWrite(), PetscBinarySynchronizedRead(), 4164ebed01fSBarry Smith PetscBinarySynchronizedSeek() 417e5c89e4eSSatish Balay @*/ 418e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscBinaryClose(int fd) 419e5c89e4eSSatish Balay { 420e5c89e4eSSatish Balay PetscFunctionBegin; 421e5c89e4eSSatish Balay close(fd); 422e5c89e4eSSatish Balay PetscFunctionReturn(0); 423e5c89e4eSSatish Balay } 424e5c89e4eSSatish Balay 425e5c89e4eSSatish Balay 426e5c89e4eSSatish Balay #undef __FUNCT__ 427e5c89e4eSSatish Balay #define __FUNCT__ "PetscBinarySeek" 428e30d2299SSatish Balay /*@ 429e5c89e4eSSatish Balay PetscBinarySeek - Moves the file pointer on a PETSc binary file. 430e5c89e4eSSatish Balay 431e5c89e4eSSatish Balay Not Collective 432e5c89e4eSSatish Balay 433e5c89e4eSSatish Balay Input Parameters: 434e5c89e4eSSatish Balay + fd - the file 435ff553b35SMatthew Knepley . off - number of bytes to move. Use PETSC_BINARY_INT_SIZE, PETSC_BINARY_SCALAR_SIZE, 436e5c89e4eSSatish Balay etc. in your calculation rather than sizeof() to compute byte lengths. 437ff553b35SMatthew Knepley - whence - if PETSC_BINARY_SEEK_SET then off is an absolute location in the file 438ff553b35SMatthew Knepley if PETSC_BINARY_SEEK_CUR then off is an offset from the current location 439ff553b35SMatthew Knepley if PETSC_BINARY_SEEK_END then off is an offset from the end of file 440e5c89e4eSSatish Balay 441e5c89e4eSSatish Balay Output Parameter: 442e5c89e4eSSatish Balay . offset - new offset in file 443e5c89e4eSSatish Balay 444e5c89e4eSSatish Balay Level: developer 445e5c89e4eSSatish Balay 446e5c89e4eSSatish Balay Notes: 447e5c89e4eSSatish Balay Integers are stored on the file as 32 long, regardless of whether 448e5c89e4eSSatish Balay they are stored in the machine as 32 or 64, this means the same 449e5c89e4eSSatish Balay binary file may be read on any machine. Hence you CANNOT use sizeof() 450e5c89e4eSSatish Balay to determine the offset or location. 451e5c89e4eSSatish Balay 452e5c89e4eSSatish Balay Concepts: files^binary seeking 453e5c89e4eSSatish Balay Concepts: binary files^seeking 454e5c89e4eSSatish Balay 4554ebed01fSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscBinaryOpen(), PetscBinarySynchronizedWrite(), PetscBinarySynchronizedRead(), 4564ebed01fSBarry Smith PetscBinarySynchronizedSeek() 457e5c89e4eSSatish Balay @*/ 458e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscBinarySeek(int fd,off_t off,PetscBinarySeekType whence,off_t *offset) 459e5c89e4eSSatish Balay { 460e5c89e4eSSatish Balay int iwhence = 0; 461e5c89e4eSSatish Balay 462e5c89e4eSSatish Balay PetscFunctionBegin; 463e5c89e4eSSatish Balay if (whence == PETSC_BINARY_SEEK_SET) { 464e5c89e4eSSatish Balay iwhence = SEEK_SET; 465e5c89e4eSSatish Balay } else if (whence == PETSC_BINARY_SEEK_CUR) { 466e5c89e4eSSatish Balay iwhence = SEEK_CUR; 467e5c89e4eSSatish Balay } else if (whence == PETSC_BINARY_SEEK_END) { 468e5c89e4eSSatish Balay iwhence = SEEK_END; 469e5c89e4eSSatish Balay } else { 470e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Unknown seek location"); 471e5c89e4eSSatish Balay } 472e5c89e4eSSatish Balay #if defined(PETSC_HAVE_LSEEK) 473e5c89e4eSSatish Balay *offset = lseek(fd,off,iwhence); 474e5c89e4eSSatish Balay #elif defined(PETSC_HAVE__LSEEK) 475e5c89e4eSSatish Balay *offset = _lseek(fd,(long)off,iwhence); 476e5c89e4eSSatish Balay #else 477e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_SUP_SYS,"System does not have a way of seeking on a file"); 478e5c89e4eSSatish Balay #endif 479e5c89e4eSSatish Balay PetscFunctionReturn(0); 480e5c89e4eSSatish Balay } 481e5c89e4eSSatish Balay 482e5c89e4eSSatish Balay #undef __FUNCT__ 4831d280d73SBarry Smith #define __FUNCT__ "PetscBinarySynchronizedRead" 484e5c89e4eSSatish Balay /*@C 4851d280d73SBarry Smith PetscBinarySynchronizedRead - Reads from a binary file. 486e5c89e4eSSatish Balay 487e5c89e4eSSatish Balay Collective on MPI_Comm 488e5c89e4eSSatish Balay 489e5c89e4eSSatish Balay Input Parameters: 490e5c89e4eSSatish Balay + comm - the MPI communicator 491e5c89e4eSSatish Balay . fd - the file 492e5c89e4eSSatish Balay . n - the number of items to read 493e5c89e4eSSatish Balay - type - the type of items to read (PETSC_INT, PETSC_DOUBLE or PETSC_SCALAR) 494e5c89e4eSSatish Balay 495e5c89e4eSSatish Balay Output Parameters: 496e5c89e4eSSatish Balay . p - the buffer 497e5c89e4eSSatish Balay 498e5c89e4eSSatish Balay Options Database Key: 499e5c89e4eSSatish Balay . -binary_longints - indicates the file was generated on a Cray vector 500e5c89e4eSSatish Balay machine (not the T3E/D) and the ints are stored as 64 bit 501e5c89e4eSSatish Balay quantities, otherwise they are stored as 32 bit 502e5c89e4eSSatish Balay 503e5c89e4eSSatish Balay Level: developer 504e5c89e4eSSatish Balay 505e5c89e4eSSatish Balay Notes: 506e5c89e4eSSatish Balay Does a PetscBinaryRead() followed by an MPI_Bcast() 507e5c89e4eSSatish Balay 5081d280d73SBarry Smith PetscBinarySynchronizedRead() uses byte swapping to work on all machines. 509e5c89e4eSSatish Balay Integers are stored on the file as 32 long, regardless of whether 510e5c89e4eSSatish Balay they are stored in the machine as 32 or 64, this means the same 511e5c89e4eSSatish Balay binary file may be read on any machine. 512e5c89e4eSSatish Balay 513e5c89e4eSSatish Balay Concepts: files^synchronized reading of binary files 514e5c89e4eSSatish Balay Concepts: binary files^reading, synchronized 515e5c89e4eSSatish Balay 5164ebed01fSBarry Smith .seealso: PetscBinaryWrite(), PetscBinaryOpen(), PetscBinaryClose(), PetscBinaryRead(), PetscBinarySynchronizedWrite(), 5174ebed01fSBarry Smith PetscBinarySynchronizedSeek() 518e5c89e4eSSatish Balay @*/ 5191d280d73SBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscBinarySynchronizedRead(MPI_Comm comm,int fd,void *p,PetscInt n,PetscDataType type) 520e5c89e4eSSatish Balay { 521e5c89e4eSSatish Balay PetscErrorCode ierr; 522e5c89e4eSSatish Balay PetscMPIInt rank; 523e5c89e4eSSatish Balay MPI_Datatype mtype; 524e5c89e4eSSatish Balay 525e5c89e4eSSatish Balay PetscFunctionBegin; 526e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 527e5c89e4eSSatish Balay if (!rank) { 528e5c89e4eSSatish Balay ierr = PetscBinaryRead(fd,p,n,type);CHKERRQ(ierr); 529e5c89e4eSSatish Balay } 530e5c89e4eSSatish Balay ierr = PetscDataTypeToMPIDataType(type,&mtype);CHKERRQ(ierr); 531e5c89e4eSSatish Balay ierr = MPI_Bcast(p,n,mtype,0,comm);CHKERRQ(ierr); 532e5c89e4eSSatish Balay PetscFunctionReturn(0); 533e5c89e4eSSatish Balay } 534e5c89e4eSSatish Balay 535e5c89e4eSSatish Balay #undef __FUNCT__ 5361d280d73SBarry Smith #define __FUNCT__ "PetscBinarySynchronizedWrite" 537e5c89e4eSSatish Balay /*@C 5381d280d73SBarry Smith PetscBinarySynchronizedWrite - writes to a binary file. 539e5c89e4eSSatish Balay 540e5c89e4eSSatish Balay Collective on MPI_Comm 541e5c89e4eSSatish Balay 542e5c89e4eSSatish Balay Input Parameters: 543e5c89e4eSSatish Balay + comm - the MPI communicator 544e5c89e4eSSatish Balay . fd - the file 545e5c89e4eSSatish Balay . n - the number of items to write 546e5c89e4eSSatish Balay . p - the buffer 547e5c89e4eSSatish Balay . istemp - the buffer may be changed 548e5c89e4eSSatish Balay - type - the type of items to write (PETSC_INT, PETSC_DOUBLE or PETSC_SCALAR) 549e5c89e4eSSatish Balay 550e5c89e4eSSatish Balay Level: developer 551e5c89e4eSSatish Balay 552e5c89e4eSSatish Balay Notes: 553e5c89e4eSSatish Balay Process 0 does a PetscBinaryWrite() 554e5c89e4eSSatish Balay 5551d280d73SBarry Smith PetscBinarySynchronizedWrite() uses byte swapping to work on all machines. 556e5c89e4eSSatish Balay Integers are stored on the file as 32 long, regardless of whether 557e5c89e4eSSatish Balay they are stored in the machine as 32 or 64, this means the same 558e5c89e4eSSatish Balay binary file may be read on any machine. 559e5c89e4eSSatish Balay 5601d280d73SBarry Smith WARNING: This is NOT like PetscSynchronizedFPrintf()! This routine ignores calls on all but process 0, 5611d280d73SBarry Smith while PetscSynchronizedFPrintf() has all processes print their strings in order. 5621d280d73SBarry Smith 563e5c89e4eSSatish Balay Concepts: files^synchronized writing of binary files 564e5c89e4eSSatish Balay Concepts: binary files^reading, synchronized 565e5c89e4eSSatish Balay 5664ebed01fSBarry Smith .seealso: PetscBinaryWrite(), PetscBinaryOpen(), PetscBinaryClose(), PetscBinaryRead(), PetscBinarySynchronizedRead(), 5674ebed01fSBarry Smith PetscBinarySynchronizedSeek() 568e5c89e4eSSatish Balay @*/ 5691d280d73SBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscBinarySynchronizedWrite(MPI_Comm comm,int fd,void *p,PetscInt n,PetscDataType type,PetscTruth istemp) 570e5c89e4eSSatish Balay { 571e5c89e4eSSatish Balay PetscErrorCode ierr; 572e5c89e4eSSatish Balay PetscMPIInt rank; 573e5c89e4eSSatish Balay 574e5c89e4eSSatish Balay PetscFunctionBegin; 575e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 576e5c89e4eSSatish Balay if (!rank) { 577e5c89e4eSSatish Balay ierr = PetscBinaryWrite(fd,p,n,type,istemp);CHKERRQ(ierr); 578e5c89e4eSSatish Balay } 579e5c89e4eSSatish Balay PetscFunctionReturn(0); 580e5c89e4eSSatish Balay } 581e5c89e4eSSatish Balay 582e5c89e4eSSatish Balay #undef __FUNCT__ 5831d280d73SBarry Smith #define __FUNCT__ "PetscBinarySynchronizedSeek" 584e5c89e4eSSatish Balay /*@C 5851d280d73SBarry Smith PetscBinarySynchronizedSeek - Moves the file pointer on a PETSc binary file. 586e5c89e4eSSatish Balay 587e5c89e4eSSatish Balay 588e5c89e4eSSatish Balay Input Parameters: 589e5c89e4eSSatish Balay + fd - the file 590e5c89e4eSSatish Balay . whence - if PETSC_BINARY_SEEK_SET then size is an absolute location in the file 591e5c89e4eSSatish Balay if PETSC_BINARY_SEEK_CUR then size is offset from current location 592e5c89e4eSSatish Balay if PETSC_BINARY_SEEK_END then size is offset from end of file 593e5c89e4eSSatish Balay - off - number of bytes to move. Use PETSC_BINARY_INT_SIZE, PETSC_BINARY_SCALAR_SIZE, 594e5c89e4eSSatish Balay etc. in your calculation rather than sizeof() to compute byte lengths. 595e5c89e4eSSatish Balay 596e5c89e4eSSatish Balay Output Parameter: 597e5c89e4eSSatish Balay . offset - new offset in file 598e5c89e4eSSatish Balay 599e5c89e4eSSatish Balay Level: developer 600e5c89e4eSSatish Balay 601e5c89e4eSSatish Balay Notes: 602e5c89e4eSSatish Balay Integers are stored on the file as 32 long, regardless of whether 603e5c89e4eSSatish Balay they are stored in the machine as 32 or 64, this means the same 604e5c89e4eSSatish Balay binary file may be read on any machine. Hence you CANNOT use sizeof() 605e5c89e4eSSatish Balay to determine the offset or location. 606e5c89e4eSSatish Balay 607e5c89e4eSSatish Balay Concepts: binary files^seeking 608e5c89e4eSSatish Balay Concepts: files^seeking in binary 609e5c89e4eSSatish Balay 6104ebed01fSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscBinaryOpen(), PetscBinarySynchronizedWrite(), PetscBinarySynchronizedRead(), 6114ebed01fSBarry Smith PetscBinarySynchronizedSeek() 612e5c89e4eSSatish Balay @*/ 6131d280d73SBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscBinarySynchronizedSeek(MPI_Comm comm,int fd,off_t off,PetscBinarySeekType whence,off_t *offset) 614e5c89e4eSSatish Balay { 615e5c89e4eSSatish Balay PetscErrorCode ierr; 616e5c89e4eSSatish Balay PetscMPIInt rank; 617e5c89e4eSSatish Balay 618e5c89e4eSSatish Balay PetscFunctionBegin; 619e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 620e5c89e4eSSatish Balay if (!rank) { 621e5c89e4eSSatish Balay ierr = PetscBinarySeek(fd,off,whence,offset);CHKERRQ(ierr); 622e5c89e4eSSatish Balay } 623e5c89e4eSSatish Balay PetscFunctionReturn(0); 624e5c89e4eSSatish Balay } 625e5c89e4eSSatish Balay 626