1e5c89e4eSSatish Balay 2e5c89e4eSSatish Balay /* 3e5c89e4eSSatish Balay This file contains simple binary read/write routines. 4e5c89e4eSSatish Balay */ 5e5c89e4eSSatish Balay 6c6db04a5SJed Brown #include <petscsys.h> 7e5c89e4eSSatish Balay #include <errno.h> 8e5c89e4eSSatish Balay #include <fcntl.h> 9e5c89e4eSSatish Balay #if defined(PETSC_HAVE_UNISTD_H) 10e5c89e4eSSatish Balay #include <unistd.h> 11e5c89e4eSSatish Balay #endif 12e5c89e4eSSatish Balay #if defined(PETSC_HAVE_IO_H) 13e5c89e4eSSatish Balay #include <io.h> 14e5c89e4eSSatish Balay #endif 15c6db04a5SJed Brown #include <petscbt.h> 16e5c89e4eSSatish Balay 17d6a4318aSJed Brown const char *const PetscFileModes[] = {"READ","WRITE","APPEND","UPDATE","APPEND_UPDATE","PetscFileMode","PETSC_FILE_",0}; 18d6a4318aSJed Brown 196de02169SBarry Smith /* --------------------------------------------------------- */ 20e5c89e4eSSatish Balay #undef __FUNCT__ 216de02169SBarry Smith #define __FUNCT__ "PetscByteSwapEnum" 22e5c89e4eSSatish Balay /* 236de02169SBarry Smith PetscByteSwapEnum - Swap bytes in a PETSc Enum 24e5c89e4eSSatish Balay 25e5c89e4eSSatish Balay */ 267087cfbeSBarry Smith PetscErrorCode PetscByteSwapEnum(PetscEnum *buff,PetscInt n) 27e5c89e4eSSatish Balay { 286de02169SBarry Smith PetscInt i,j; 290b20345dSBarry Smith PetscEnum tmp = ENUM_DUMMY; 30e0890e22SSatish Balay char *ptr1,*ptr2 = (char*)&tmp; 31e5c89e4eSSatish Balay 32e5c89e4eSSatish Balay PetscFunctionBegin; 33e5c89e4eSSatish Balay for (j=0; j<n; j++) { 34e5c89e4eSSatish Balay ptr1 = (char*)(buff + j); 35a297a907SKarl Rupp for (i=0; i<(PetscInt)sizeof(PetscEnum); i++) ptr2[i] = ptr1[sizeof(PetscEnum)-1-i]; 36a297a907SKarl Rupp for (i=0; i<(PetscInt)sizeof(PetscEnum); i++) ptr1[i] = ptr2[i]; 37e5c89e4eSSatish Balay } 38e5c89e4eSSatish Balay PetscFunctionReturn(0); 39e5c89e4eSSatish Balay } 406de02169SBarry Smith 416de02169SBarry Smith #undef __FUNCT__ 42acfcf0e5SJed Brown #define __FUNCT__ "PetscByteSwapBool" 436de02169SBarry Smith /* 44acfcf0e5SJed Brown PetscByteSwapBool - Swap bytes in a PETSc Bool 456de02169SBarry Smith 466de02169SBarry Smith */ 477087cfbeSBarry Smith PetscErrorCode PetscByteSwapBool(PetscBool *buff,PetscInt n) 486de02169SBarry Smith { 496de02169SBarry Smith PetscInt i,j; 50ace3abfcSBarry Smith PetscBool tmp = PETSC_FALSE; 51e0890e22SSatish Balay char *ptr1,*ptr2 = (char*)&tmp; 526de02169SBarry Smith 536de02169SBarry Smith PetscFunctionBegin; 546de02169SBarry Smith for (j=0; j<n; j++) { 556de02169SBarry Smith ptr1 = (char*)(buff + j); 56a297a907SKarl Rupp for (i=0; i<(PetscInt)sizeof(PetscBool); i++) ptr2[i] = ptr1[sizeof(PetscBool)-1-i]; 57a297a907SKarl Rupp for (i=0; i<(PetscInt)sizeof(PetscBool); i++) ptr1[i] = ptr2[i]; 586de02169SBarry Smith } 596de02169SBarry Smith PetscFunctionReturn(0); 606de02169SBarry Smith } 616de02169SBarry Smith 62e5c89e4eSSatish Balay #undef __FUNCT__ 63bd1d2e58SBarry Smith #define __FUNCT__ "PetscByteSwapInt" 64bd1d2e58SBarry Smith /* 656de02169SBarry Smith PetscByteSwapInt - Swap bytes in a PETSc integer (which may be 32 or 64 bits) 66bd1d2e58SBarry Smith 67bd1d2e58SBarry Smith */ 687087cfbeSBarry Smith PetscErrorCode PetscByteSwapInt(PetscInt *buff,PetscInt n) 69bd1d2e58SBarry Smith { 70bd1d2e58SBarry Smith PetscInt i,j,tmp = 0; 71e0890e22SSatish Balay char *ptr1,*ptr2 = (char*)&tmp; 72bd1d2e58SBarry Smith 73bd1d2e58SBarry Smith PetscFunctionBegin; 74bd1d2e58SBarry Smith for (j=0; j<n; j++) { 75bd1d2e58SBarry Smith ptr1 = (char*)(buff + j); 76a297a907SKarl Rupp for (i=0; i<(PetscInt)sizeof(PetscInt); i++) ptr2[i] = ptr1[sizeof(PetscInt)-1-i]; 77a297a907SKarl Rupp for (i=0; i<(PetscInt)sizeof(PetscInt); i++) ptr1[i] = ptr2[i]; 78bd1d2e58SBarry Smith } 79bd1d2e58SBarry Smith PetscFunctionReturn(0); 80bd1d2e58SBarry Smith } 81bd1d2e58SBarry Smith /* --------------------------------------------------------- */ 82bd1d2e58SBarry Smith #undef __FUNCT__ 83e5c89e4eSSatish Balay #define __FUNCT__ "PetscByteSwapShort" 84e5c89e4eSSatish Balay /* 85e5c89e4eSSatish Balay PetscByteSwapShort - Swap bytes in a short 86e5c89e4eSSatish Balay */ 877087cfbeSBarry Smith PetscErrorCode PetscByteSwapShort(short *buff,PetscInt n) 88e5c89e4eSSatish Balay { 89e5c89e4eSSatish Balay PetscInt i,j; 90e5c89e4eSSatish Balay short tmp; 91e5c89e4eSSatish Balay char *ptr1,*ptr2 = (char*)&tmp; 92e5c89e4eSSatish Balay 93e5c89e4eSSatish Balay PetscFunctionBegin; 94e5c89e4eSSatish Balay for (j=0; j<n; j++) { 95e5c89e4eSSatish Balay ptr1 = (char*)(buff + j); 96a297a907SKarl Rupp for (i=0; i<(PetscInt) sizeof(short); i++) ptr2[i] = ptr1[sizeof(short)-1-i]; 97a297a907SKarl Rupp for (i=0; i<(PetscInt) sizeof(short); i++) ptr1[i] = ptr2[i]; 98e5c89e4eSSatish Balay } 99e5c89e4eSSatish Balay PetscFunctionReturn(0); 100e5c89e4eSSatish Balay } 101e5c89e4eSSatish Balay /* --------------------------------------------------------- */ 102e5c89e4eSSatish Balay #undef __FUNCT__ 103e5c89e4eSSatish Balay #define __FUNCT__ "PetscByteSwapScalar" 104e5c89e4eSSatish Balay /* 105e5c89e4eSSatish Balay PetscByteSwapScalar - Swap bytes in a double 106e5c89e4eSSatish Balay Complex is dealt with as if array of double twice as long. 107e5c89e4eSSatish Balay */ 1087087cfbeSBarry Smith PetscErrorCode PetscByteSwapScalar(PetscScalar *buff,PetscInt n) 109e5c89e4eSSatish Balay { 110e5c89e4eSSatish Balay PetscInt i,j; 111e5c89e4eSSatish Balay PetscReal tmp,*buff1 = (PetscReal*)buff; 112e5c89e4eSSatish Balay char *ptr1,*ptr2 = (char*)&tmp; 113e5c89e4eSSatish Balay 114e5c89e4eSSatish Balay PetscFunctionBegin; 115e5c89e4eSSatish Balay #if defined(PETSC_USE_COMPLEX) 116e5c89e4eSSatish Balay n *= 2; 117e5c89e4eSSatish Balay #endif 118e5c89e4eSSatish Balay for (j=0; j<n; j++) { 119e5c89e4eSSatish Balay ptr1 = (char*)(buff1 + j); 120a297a907SKarl Rupp for (i=0; i<(PetscInt) sizeof(PetscReal); i++) ptr2[i] = ptr1[sizeof(PetscReal)-1-i]; 121a297a907SKarl Rupp for (i=0; i<(PetscInt) sizeof(PetscReal); i++) ptr1[i] = ptr2[i]; 122e5c89e4eSSatish Balay } 123e5c89e4eSSatish Balay PetscFunctionReturn(0); 124e5c89e4eSSatish Balay } 125e5c89e4eSSatish Balay /* --------------------------------------------------------- */ 126e5c89e4eSSatish Balay #undef __FUNCT__ 127e5c89e4eSSatish Balay #define __FUNCT__ "PetscByteSwapDouble" 128e5c89e4eSSatish Balay /* 129e5c89e4eSSatish Balay PetscByteSwapDouble - Swap bytes in a double 130e5c89e4eSSatish Balay */ 1317087cfbeSBarry Smith PetscErrorCode PetscByteSwapDouble(double *buff,PetscInt n) 132e5c89e4eSSatish Balay { 133e5c89e4eSSatish Balay PetscInt i,j; 134e5c89e4eSSatish Balay double tmp,*buff1 = (double*)buff; 135e5c89e4eSSatish Balay char *ptr1,*ptr2 = (char*)&tmp; 136e5c89e4eSSatish Balay 137e5c89e4eSSatish Balay PetscFunctionBegin; 138e5c89e4eSSatish Balay for (j=0; j<n; j++) { 139e5c89e4eSSatish Balay ptr1 = (char*)(buff1 + j); 140a297a907SKarl Rupp for (i=0; i<(PetscInt) sizeof(double); i++) ptr2[i] = ptr1[sizeof(double)-1-i]; 141a297a907SKarl Rupp for (i=0; i<(PetscInt) sizeof(double); i++) ptr1[i] = ptr2[i]; 142e5c89e4eSSatish Balay } 143e5c89e4eSSatish Balay PetscFunctionReturn(0); 144e5c89e4eSSatish Balay } 145e39fd77fSBarry Smith 146e39fd77fSBarry Smith #undef __FUNCT__ 147e95bf02fSSatish Balay #define __FUNCT__ "PetscByteSwapFloat" 148e95bf02fSSatish Balay /* 149e95bf02fSSatish Balay PetscByteSwapFloat - Swap bytes in a float 150e95bf02fSSatish Balay */ 151e95bf02fSSatish Balay PetscErrorCode PetscByteSwapFloat(float *buff,PetscInt n) 152e95bf02fSSatish Balay { 153e95bf02fSSatish Balay PetscInt i,j; 154e95bf02fSSatish Balay float tmp,*buff1 = (float*)buff; 155e95bf02fSSatish Balay char *ptr1,*ptr2 = (char*)&tmp; 156e95bf02fSSatish Balay 157e95bf02fSSatish Balay PetscFunctionBegin; 158e95bf02fSSatish Balay for (j=0; j<n; j++) { 159e95bf02fSSatish Balay ptr1 = (char*)(buff1 + j); 160a297a907SKarl Rupp for (i=0; i<(PetscInt) sizeof(float); i++) ptr2[i] = ptr1[sizeof(float)-1-i]; 161a297a907SKarl Rupp for (i=0; i<(PetscInt) sizeof(float); i++) ptr1[i] = ptr2[i]; 162e95bf02fSSatish Balay } 163e95bf02fSSatish Balay PetscFunctionReturn(0); 164e95bf02fSSatish Balay } 165e95bf02fSSatish Balay 166e95bf02fSSatish Balay #undef __FUNCT__ 167e39fd77fSBarry Smith #define __FUNCT__ "PetscByteSwap" 168e39fd77fSBarry Smith PetscErrorCode PetscByteSwap(void *data,PetscDataType pdtype,PetscInt count) 169e39fd77fSBarry Smith { 170e39fd77fSBarry Smith PetscErrorCode ierr; 171e39fd77fSBarry Smith 172e39fd77fSBarry Smith PetscFunctionBegin; 173e39fd77fSBarry Smith if (pdtype == PETSC_INT) {ierr = PetscByteSwapInt((PetscInt*)data,count);CHKERRQ(ierr);} 174e39fd77fSBarry Smith else if (pdtype == PETSC_ENUM) {ierr = PetscByteSwapEnum((PetscEnum*)data,count);CHKERRQ(ierr);} 175acfcf0e5SJed Brown else if (pdtype == PETSC_BOOL) {ierr = PetscByteSwapBool((PetscBool*)data,count);CHKERRQ(ierr);} 176e39fd77fSBarry Smith else if (pdtype == PETSC_SCALAR) {ierr = PetscByteSwapScalar((PetscScalar*)data,count);CHKERRQ(ierr);} 177e39fd77fSBarry Smith else if (pdtype == PETSC_DOUBLE) {ierr = PetscByteSwapDouble((double*)data,count);CHKERRQ(ierr);} 178e95bf02fSSatish Balay else if (pdtype == PETSC_FLOAT) {ierr = PetscByteSwapFloat((float*)data,count);CHKERRQ(ierr);} 179e39fd77fSBarry Smith else if (pdtype == PETSC_SHORT) {ierr = PetscByteSwapShort((short*)data,count);CHKERRQ(ierr);} 180e39fd77fSBarry Smith PetscFunctionReturn(0); 181e39fd77fSBarry Smith } 182e39fd77fSBarry Smith 183e5c89e4eSSatish Balay /* --------------------------------------------------------- */ 184e5c89e4eSSatish Balay #undef __FUNCT__ 185e5c89e4eSSatish Balay #define __FUNCT__ "PetscBinaryRead" 186e30d2299SSatish Balay /*@ 187e5c89e4eSSatish Balay PetscBinaryRead - Reads from a binary file. 188e5c89e4eSSatish Balay 189e5c89e4eSSatish Balay Not Collective 190e5c89e4eSSatish Balay 191e5c89e4eSSatish Balay Input Parameters: 192e5c89e4eSSatish Balay + fd - the file 193e5c89e4eSSatish Balay . n - the number of items to read 194e5c89e4eSSatish Balay - type - the type of items to read (PETSC_INT, PETSC_DOUBLE or PETSC_SCALAR) 195e5c89e4eSSatish Balay 196e5c89e4eSSatish Balay Output Parameters: 197e5c89e4eSSatish Balay . p - the buffer 198e5c89e4eSSatish Balay 199e5c89e4eSSatish Balay 200e5c89e4eSSatish Balay 201e5c89e4eSSatish Balay Level: developer 202e5c89e4eSSatish Balay 203e5c89e4eSSatish Balay Notes: 204e5c89e4eSSatish Balay PetscBinaryRead() uses byte swapping to work on all machines; the files 205e5c89e4eSSatish Balay are written to file ALWAYS using big-endian ordering. On small-endian machines the numbers 206e5c89e4eSSatish Balay are converted to the small-endian format when they are read in from the file. 207e2e64c6bSBarry Smith When PETSc is ./configure with --with-64bit-indices the integers are written to the 20854f21887SBarry Smith file as 64 bit integers, this means they can only be read back in when the option --with-64bit-indices 20954f21887SBarry Smith is used. 210e5c89e4eSSatish Balay 211e5c89e4eSSatish Balay Concepts: files^reading binary 212e5c89e4eSSatish Balay Concepts: binary files^reading 213e5c89e4eSSatish Balay 2144ebed01fSBarry Smith .seealso: PetscBinaryWrite(), PetscBinaryOpen(), PetscBinaryClose(), PetscViewerBinaryGetDescriptor(), PetscBinarySynchronizedWrite(), 2154ebed01fSBarry Smith PetscBinarySynchronizedRead(), PetscBinarySynchronizedSeek() 216e5c89e4eSSatish Balay @*/ 2177087cfbeSBarry Smith PetscErrorCode PetscBinaryRead(int fd,void *p,PetscInt n,PetscDataType type) 218e5c89e4eSSatish Balay { 219e5c89e4eSSatish Balay int wsize,err; 220e5c89e4eSSatish Balay size_t m = (size_t) n,maxblock = 65536; 221e5c89e4eSSatish Balay char *pp = (char*)p; 2227a881295SBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) 2237a881295SBarry Smith double *ppp; 2247a881295SBarry Smith #endif 2257a881295SBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) || defined(PETSC_USE_REAL___FLOAT128) 2266de02169SBarry Smith PetscErrorCode ierr; 2277a881295SBarry Smith #endif 2287a881295SBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 229e5c89e4eSSatish Balay void *ptmp = p; 230e5c89e4eSSatish Balay #endif 2312d53ad75SBarry Smith char fname[64]; 2322d53ad75SBarry Smith PetscBool functionload = PETSC_FALSE; 233e5c89e4eSSatish Balay 234e5c89e4eSSatish Balay PetscFunctionBegin; 2352d53ad75SBarry Smith if (n < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to write a negative amount of data %D",n); 236e5c89e4eSSatish Balay if (!n) PetscFunctionReturn(0); 237e5c89e4eSSatish Balay 2382d53ad75SBarry Smith if (type == PETSC_FUNCTION) { 2392d53ad75SBarry Smith functionload = PETSC_TRUE; 2402d53ad75SBarry Smith m = 64; 2412d53ad75SBarry Smith type = PETSC_CHAR; 2422d53ad75SBarry Smith pp = (char*)fname; 2432d53ad75SBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2442d53ad75SBarry Smith ptmp = (void*)fname; 2452d53ad75SBarry Smith #endif 2462d53ad75SBarry Smith } 2472d53ad75SBarry Smith 2486de02169SBarry Smith if (type == PETSC_INT) m *= sizeof(PetscInt); 249e5c89e4eSSatish Balay else if (type == PETSC_SCALAR) m *= sizeof(PetscScalar); 250e5c89e4eSSatish Balay else if (type == PETSC_DOUBLE) m *= sizeof(double); 251e95bf02fSSatish Balay else if (type == PETSC_FLOAT) m *= sizeof(float); 252e5c89e4eSSatish Balay else if (type == PETSC_SHORT) m *= sizeof(short); 253e5c89e4eSSatish Balay else if (type == PETSC_CHAR) m *= sizeof(char); 254e5c89e4eSSatish Balay else if (type == PETSC_ENUM) m *= sizeof(PetscEnum); 255ace3abfcSBarry Smith else if (type == PETSC_BOOL) m *= sizeof(PetscBool); 2569f7b6320SBarry Smith else if (type == PETSC_BIT_LOGICAL) m = PetscBTLength(m)*sizeof(char); 257e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Unknown type"); 258e5c89e4eSSatish Balay 2597a881295SBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) 2607a881295SBarry Smith /* If using __float128 precision we still read in doubles from file */ 2617a881295SBarry Smith if (type == PETSC_SCALAR) { 2627a881295SBarry Smith m = m/2; 263*785e854fSJed Brown ierr = PetscMalloc1(n,&ppp);CHKERRQ(ierr); 2647a881295SBarry Smith pp = (char*)ppp; 2657a881295SBarry Smith } 2667a881295SBarry Smith #endif 2677a881295SBarry Smith 268e5c89e4eSSatish Balay while (m) { 269e5c89e4eSSatish Balay wsize = (m < maxblock) ? m : maxblock; 270e5c89e4eSSatish Balay err = read(fd,pp,wsize); 271e5c89e4eSSatish Balay if (err < 0 && errno == EINTR) continue; 272e32f2f54SBarry Smith if (!err && wsize > 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_READ,"Read past end of file"); 273e32f2f54SBarry Smith if (err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_READ,"Error reading from file, errno %d",errno); 274e5c89e4eSSatish Balay m -= err; 275e5c89e4eSSatish Balay pp += err; 276e5c89e4eSSatish Balay } 2777a881295SBarry Smith 2787a881295SBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) 2797a881295SBarry Smith if (type == PETSC_SCALAR) { 2807a881295SBarry Smith PetscScalar *pv = (PetscScalar*) p; 2817a881295SBarry Smith PetscInt i; 2827a881295SBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2837a881295SBarry Smith ierr = PetscByteSwapDouble(ppp,n);CHKERRQ(ierr); 2847a881295SBarry Smith #endif 285a297a907SKarl Rupp for (i=0; i<n; i++) pv[i] = ppp[i]; 2867a881295SBarry Smith ierr = PetscFree(ppp);CHKERRQ(ierr); 2877a881295SBarry Smith PetscFunctionReturn(0); 2887a881295SBarry Smith } 2897a881295SBarry Smith #endif 2907a881295SBarry Smith 291e5c89e4eSSatish Balay #if !defined(PETSC_WORDS_BIGENDIAN) 292e39fd77fSBarry Smith ierr = PetscByteSwap(ptmp,type,n);CHKERRQ(ierr); 293e5c89e4eSSatish Balay #endif 294e5c89e4eSSatish Balay 2952d53ad75SBarry Smith if (functionload) { 2962d53ad75SBarry Smith #if defined(PETSC_SERIALIZE_FUNCTIONS) 2970298fd71SBarry Smith ierr = PetscDLSym(NULL,fname,(void**)p);CHKERRQ(ierr); 2982d53ad75SBarry Smith #else 2990298fd71SBarry Smith *(void**)p = NULL; 3002d53ad75SBarry Smith #endif 3012d53ad75SBarry Smith } 302e5c89e4eSSatish Balay PetscFunctionReturn(0); 303e5c89e4eSSatish Balay } 304e5c89e4eSSatish Balay /* --------------------------------------------------------- */ 305e5c89e4eSSatish Balay #undef __FUNCT__ 306e5c89e4eSSatish Balay #define __FUNCT__ "PetscBinaryWrite" 307e30d2299SSatish Balay /*@ 308e5c89e4eSSatish Balay PetscBinaryWrite - Writes to a binary file. 309e5c89e4eSSatish Balay 310e5c89e4eSSatish Balay Not Collective 311e5c89e4eSSatish Balay 312e5c89e4eSSatish Balay Input Parameters: 313e5c89e4eSSatish Balay + fd - the file 314e5c89e4eSSatish Balay . p - the buffer 315e5c89e4eSSatish Balay . n - the number of items to write 316e5c89e4eSSatish Balay . type - the type of items to read (PETSC_INT, PETSC_DOUBLE or PETSC_SCALAR) 317e5c89e4eSSatish Balay - istemp - PETSC_FALSE if buffer data should be preserved, PETSC_TRUE otherwise. 318e5c89e4eSSatish Balay 319e5c89e4eSSatish Balay Level: advanced 320e5c89e4eSSatish Balay 321e5c89e4eSSatish Balay Notes: 322e5c89e4eSSatish Balay PetscBinaryWrite() uses byte swapping to work on all machines; the files 323e5c89e4eSSatish Balay are written using big-endian ordering to the file. On small-endian machines the numbers 324e5c89e4eSSatish Balay are converted to the big-endian format when they are written to disk. 325e2e64c6bSBarry Smith When PETSc is ./configure with --with-64bit-indices the integers are written to the 32654f21887SBarry Smith file as 64 bit integers, this means they can only be read back in when the option --with-64bit-indices 32754f21887SBarry Smith is used. 328e5c89e4eSSatish Balay 329e5c89e4eSSatish Balay The Buffer p should be read-write buffer, and not static data. 330e5c89e4eSSatish Balay This way, byte-swapping is done in-place, and then the buffer is 331e5c89e4eSSatish Balay written to the file. 332e5c89e4eSSatish Balay 333e5c89e4eSSatish Balay This routine restores the original contents of the buffer, after 334e5c89e4eSSatish Balay it is written to the file. This is done by byte-swapping in-place 335e5c89e4eSSatish Balay the second time. If the flag istemp is set to PETSC_TRUE, the second 336e5c89e4eSSatish Balay byte-swapping operation is not done, thus saving some computation, 337e5f36e38SBarry Smith but the buffer is left corrupted. 338e5c89e4eSSatish Balay 339300a7f5bSBarry Smith Because byte-swapping may be done on the values in data it cannot be declared const 340300a7f5bSBarry Smith 341e5c89e4eSSatish Balay Concepts: files^writing binary 342e5c89e4eSSatish Balay Concepts: binary files^writing 343e5c89e4eSSatish Balay 3444ebed01fSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryOpen(), PetscBinaryClose(), PetscViewerBinaryGetDescriptor(), PetscBinarySynchronizedWrite(), 3454ebed01fSBarry Smith PetscBinarySynchronizedRead(), PetscBinarySynchronizedSeek() 346e5c89e4eSSatish Balay @*/ 3477087cfbeSBarry Smith PetscErrorCode PetscBinaryWrite(int fd,void *p,PetscInt n,PetscDataType type,PetscBool istemp) 348e5c89e4eSSatish Balay { 349e5c89e4eSSatish Balay char *pp = (char*)p; 350e5c89e4eSSatish Balay int err,wsize; 351e5c89e4eSSatish Balay size_t m = (size_t)n,maxblock=65536; 352e5c89e4eSSatish Balay PetscErrorCode ierr; 353f5351476SHong Zhang #if !defined(PETSC_WORDS_BIGENDIAN) 354e5c89e4eSSatish Balay void *ptmp = p; 355e5c89e4eSSatish Balay #endif 3562d53ad75SBarry Smith char fname[64]; 357e5c89e4eSSatish Balay 358e5c89e4eSSatish Balay PetscFunctionBegin; 359e32f2f54SBarry Smith if (n < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to write a negative amount of data %D",n); 360e5c89e4eSSatish Balay if (!n) PetscFunctionReturn(0); 361e5c89e4eSSatish Balay 3622d53ad75SBarry Smith if (type == PETSC_FUNCTION) { 3632d53ad75SBarry Smith #if defined(PETSC_SERIALIZE_FUNCTIONS) 3642d53ad75SBarry Smith const char *fnametmp; 3652d53ad75SBarry Smith 3662d53ad75SBarry Smith if (n > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only binary view a single function at a time"); 3679200755eSBarry Smith ierr = PetscFPTFind(*(void**)p,&fnametmp);CHKERRQ(ierr); 3682d53ad75SBarry Smith ierr = PetscStrncpy(fname,fnametmp,64);CHKERRQ(ierr); 3692d53ad75SBarry Smith #else 3702d53ad75SBarry Smith ierr = PetscStrncpy(fname,"",64);CHKERRQ(ierr); 3712d53ad75SBarry Smith #endif 3722d53ad75SBarry Smith m = 64; 3732d53ad75SBarry Smith type = PETSC_CHAR; 3742d53ad75SBarry Smith pp = (char*)fname; 3752d53ad75SBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 3762d53ad75SBarry Smith ptmp = (void*)fname; 3772d53ad75SBarry Smith #endif 3782d53ad75SBarry Smith } 3792d53ad75SBarry Smith 3806de02169SBarry Smith if (type == PETSC_INT) m *= sizeof(PetscInt); 381e5c89e4eSSatish Balay else if (type == PETSC_SCALAR) m *= sizeof(PetscScalar); 382e5c89e4eSSatish Balay else if (type == PETSC_DOUBLE) m *= sizeof(double); 383e95bf02fSSatish Balay else if (type == PETSC_FLOAT) m *= sizeof(float); 384e5c89e4eSSatish Balay else if (type == PETSC_SHORT) m *= sizeof(short); 385e5c89e4eSSatish Balay else if (type == PETSC_CHAR) m *= sizeof(char); 386e5c89e4eSSatish Balay else if (type == PETSC_ENUM) m *= sizeof(PetscEnum); 387ace3abfcSBarry Smith else if (type == PETSC_BOOL) m *= sizeof(PetscBool); 3889f7b6320SBarry Smith else if (type == PETSC_BIT_LOGICAL) m = PetscBTLength(m)*sizeof(char); 389e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Unknown type"); 390e5c89e4eSSatish Balay 391e5c89e4eSSatish Balay #if !defined(PETSC_WORDS_BIGENDIAN) 392e39fd77fSBarry Smith ierr = PetscByteSwap(ptmp,type,n);CHKERRQ(ierr); 393e5c89e4eSSatish Balay #endif 394e5c89e4eSSatish Balay 395e5c89e4eSSatish Balay while (m) { 396e5c89e4eSSatish Balay wsize = (m < maxblock) ? m : maxblock; 397e5c89e4eSSatish Balay err = write(fd,pp,wsize); 398e5c89e4eSSatish Balay if (err < 0 && errno == EINTR) continue; 399e32f2f54SBarry Smith if (err != wsize) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_WRITE,"Error writing to file."); 400e5c89e4eSSatish Balay m -= wsize; 401e5c89e4eSSatish Balay pp += wsize; 402e5c89e4eSSatish Balay } 403e5c89e4eSSatish Balay 404b659c0ceSSatish Balay #if !defined(PETSC_WORDS_BIGENDIAN) 405e5c89e4eSSatish Balay if (!istemp) { 406e39fd77fSBarry Smith ierr = PetscByteSwap(ptmp,type,n);CHKERRQ(ierr); 407e5c89e4eSSatish Balay } 408e5c89e4eSSatish Balay #endif 409e5c89e4eSSatish Balay PetscFunctionReturn(0); 410e5c89e4eSSatish Balay } 411e5c89e4eSSatish Balay 412e5c89e4eSSatish Balay #undef __FUNCT__ 413e5c89e4eSSatish Balay #define __FUNCT__ "PetscBinaryOpen" 414e5c89e4eSSatish Balay /*@C 415e5c89e4eSSatish Balay PetscBinaryOpen - Opens a PETSc binary file. 416e5c89e4eSSatish Balay 417e5c89e4eSSatish Balay Not Collective 418e5c89e4eSSatish Balay 419e5c89e4eSSatish Balay Input Parameters: 420e5c89e4eSSatish Balay + name - filename 42145c64e65SBarry Smith - type - type of binary file, one of FILE_MODE_READ, FILE_MODE_APPEND, FILE_MODE_WRITE 422e5c89e4eSSatish Balay 423e5c89e4eSSatish Balay Output Parameter: 424e5c89e4eSSatish Balay . fd - the file 425e5c89e4eSSatish Balay 426e5c89e4eSSatish Balay Level: advanced 427e5c89e4eSSatish Balay 428e5c89e4eSSatish Balay Concepts: files^opening binary 429e5c89e4eSSatish Balay Concepts: binary files^opening 430e5c89e4eSSatish Balay 431e5c89e4eSSatish Balay Notes: Files access with PetscBinaryRead() and PetscBinaryWrite() are ALWAYS written in 432e5c89e4eSSatish Balay big-endian format. This means the file can be accessed using PetscBinaryOpen() and 433e5c89e4eSSatish Balay PetscBinaryRead() and PetscBinaryWrite() on any machine. 434e5c89e4eSSatish Balay 4354ebed01fSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscFileMode, PetscViewerFileSetMode(), PetscViewerBinaryGetDescriptor(), 4364ebed01fSBarry Smith PetscBinarySynchronizedWrite(), PetscBinarySynchronizedRead(), PetscBinarySynchronizedSeek() 43745c64e65SBarry Smith 438e5c89e4eSSatish Balay @*/ 4397087cfbeSBarry Smith PetscErrorCode PetscBinaryOpen(const char name[],PetscFileMode mode,int *fd) 440e5c89e4eSSatish Balay { 441e5c89e4eSSatish Balay PetscFunctionBegin; 442e5c89e4eSSatish Balay #if defined(PETSC_HAVE_O_BINARY) 44345c64e65SBarry Smith if (mode == FILE_MODE_WRITE) { 444a297a907SKarl Rupp if ((*fd = open(name,O_WRONLY|O_CREAT|O_TRUNC|O_BINARY,0666)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot create file for writing: %s",name); 44545c64e65SBarry Smith } else if (mode == FILE_MODE_READ) { 446a297a907SKarl Rupp if ((*fd = open(name,O_RDONLY|O_BINARY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file for reading: %s",name); 44745c64e65SBarry Smith } else if (mode == FILE_MODE_APPEND) { 448a297a907SKarl Rupp if ((*fd = open(name,O_WRONLY|O_BINARY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file for writing: %s",name); 449e5c89e4eSSatish Balay #else 45045c64e65SBarry Smith if (mode == FILE_MODE_WRITE) { 451a297a907SKarl Rupp if ((*fd = creat(name,0666)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot create file for writing: %s",name); 45245c64e65SBarry Smith } else if (mode == FILE_MODE_READ) { 453a297a907SKarl Rupp if ((*fd = open(name,O_RDONLY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file for reading: %s",name); 454e5c89e4eSSatish Balay } 45545c64e65SBarry Smith else if (mode == FILE_MODE_APPEND) { 456a297a907SKarl Rupp if ((*fd = open(name,O_WRONLY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file for writing: %s",name); 457e5c89e4eSSatish Balay #endif 458e32f2f54SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Unknown file mode"); 459e5c89e4eSSatish Balay PetscFunctionReturn(0); 460e5c89e4eSSatish Balay } 461e5c89e4eSSatish Balay 462e5c89e4eSSatish Balay #undef __FUNCT__ 463e5c89e4eSSatish Balay #define __FUNCT__ "PetscBinaryClose" 464e30d2299SSatish Balay /*@ 465e5c89e4eSSatish Balay PetscBinaryClose - Closes a PETSc binary file. 466e5c89e4eSSatish Balay 467e5c89e4eSSatish Balay Not Collective 468e5c89e4eSSatish Balay 469e5c89e4eSSatish Balay Output Parameter: 470e5c89e4eSSatish Balay . fd - the file 471e5c89e4eSSatish Balay 472e5c89e4eSSatish Balay Level: advanced 473e5c89e4eSSatish Balay 4744ebed01fSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscBinaryOpen(), PetscBinarySynchronizedWrite(), PetscBinarySynchronizedRead(), 4754ebed01fSBarry Smith PetscBinarySynchronizedSeek() 476e5c89e4eSSatish Balay @*/ 4777087cfbeSBarry Smith PetscErrorCode PetscBinaryClose(int fd) 478e5c89e4eSSatish Balay { 479e5c89e4eSSatish Balay PetscFunctionBegin; 480e5c89e4eSSatish Balay close(fd); 481e5c89e4eSSatish Balay PetscFunctionReturn(0); 482e5c89e4eSSatish Balay } 483e5c89e4eSSatish Balay 484e5c89e4eSSatish Balay 485e5c89e4eSSatish Balay #undef __FUNCT__ 486e5c89e4eSSatish Balay #define __FUNCT__ "PetscBinarySeek" 487e30d2299SSatish Balay /*@ 488e5c89e4eSSatish Balay PetscBinarySeek - Moves the file pointer on a PETSc binary file. 489e5c89e4eSSatish Balay 490e5c89e4eSSatish Balay Not Collective 491e5c89e4eSSatish Balay 492e5c89e4eSSatish Balay Input Parameters: 493e5c89e4eSSatish Balay + fd - the file 494ff553b35SMatthew Knepley . off - number of bytes to move. Use PETSC_BINARY_INT_SIZE, PETSC_BINARY_SCALAR_SIZE, 495e5c89e4eSSatish Balay etc. in your calculation rather than sizeof() to compute byte lengths. 496ff553b35SMatthew Knepley - whence - if PETSC_BINARY_SEEK_SET then off is an absolute location in the file 497ff553b35SMatthew Knepley if PETSC_BINARY_SEEK_CUR then off is an offset from the current location 498ff553b35SMatthew Knepley if PETSC_BINARY_SEEK_END then off is an offset from the end of file 499e5c89e4eSSatish Balay 500e5c89e4eSSatish Balay Output Parameter: 501e5c89e4eSSatish Balay . offset - new offset in file 502e5c89e4eSSatish Balay 503e5c89e4eSSatish Balay Level: developer 504e5c89e4eSSatish Balay 505e5c89e4eSSatish Balay Notes: 506e5c89e4eSSatish Balay Integers are stored on the file as 32 long, regardless of whether 507e5c89e4eSSatish Balay they are stored in the machine as 32 or 64, this means the same 508e5c89e4eSSatish Balay binary file may be read on any machine. Hence you CANNOT use sizeof() 509e5c89e4eSSatish Balay to determine the offset or location. 510e5c89e4eSSatish Balay 511e5c89e4eSSatish Balay Concepts: files^binary seeking 512e5c89e4eSSatish Balay Concepts: binary files^seeking 513e5c89e4eSSatish Balay 5144ebed01fSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscBinaryOpen(), PetscBinarySynchronizedWrite(), PetscBinarySynchronizedRead(), 5154ebed01fSBarry Smith PetscBinarySynchronizedSeek() 516e5c89e4eSSatish Balay @*/ 5177087cfbeSBarry Smith PetscErrorCode PetscBinarySeek(int fd,off_t off,PetscBinarySeekType whence,off_t *offset) 518e5c89e4eSSatish Balay { 519e5c89e4eSSatish Balay int iwhence = 0; 520e5c89e4eSSatish Balay 521e5c89e4eSSatish Balay PetscFunctionBegin; 522a297a907SKarl Rupp if (whence == PETSC_BINARY_SEEK_SET) iwhence = SEEK_SET; 523a297a907SKarl Rupp else if (whence == PETSC_BINARY_SEEK_CUR) iwhence = SEEK_CUR; 524a297a907SKarl Rupp else if (whence == PETSC_BINARY_SEEK_END) iwhence = SEEK_END; 525a297a907SKarl Rupp else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Unknown seek location"); 526e5c89e4eSSatish Balay #if defined(PETSC_HAVE_LSEEK) 527e5c89e4eSSatish Balay *offset = lseek(fd,off,iwhence); 528e5c89e4eSSatish Balay #elif defined(PETSC_HAVE__LSEEK) 529e5c89e4eSSatish Balay *offset = _lseek(fd,(long)off,iwhence); 530e5c89e4eSSatish Balay #else 531e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP_SYS,"System does not have a way of seeking on a file"); 532e5c89e4eSSatish Balay #endif 533e5c89e4eSSatish Balay PetscFunctionReturn(0); 534e5c89e4eSSatish Balay } 535e5c89e4eSSatish Balay 536e5c89e4eSSatish Balay #undef __FUNCT__ 5371d280d73SBarry Smith #define __FUNCT__ "PetscBinarySynchronizedRead" 538e5c89e4eSSatish Balay /*@C 5391d280d73SBarry Smith PetscBinarySynchronizedRead - Reads from a binary file. 540e5c89e4eSSatish Balay 541e5c89e4eSSatish Balay Collective on MPI_Comm 542e5c89e4eSSatish Balay 543e5c89e4eSSatish Balay Input Parameters: 544e5c89e4eSSatish Balay + comm - the MPI communicator 545e5c89e4eSSatish Balay . fd - the file 546e5c89e4eSSatish Balay . n - the number of items to read 547e5c89e4eSSatish Balay - type - the type of items to read (PETSC_INT, PETSC_DOUBLE or PETSC_SCALAR) 548e5c89e4eSSatish Balay 549e5c89e4eSSatish Balay Output Parameters: 550e5c89e4eSSatish Balay . p - the buffer 551e5c89e4eSSatish Balay 552e5c89e4eSSatish Balay Options Database Key: 553e5c89e4eSSatish Balay . -binary_longints - indicates the file was generated on a Cray vector 554e5c89e4eSSatish Balay machine (not the T3E/D) and the ints are stored as 64 bit 555e5c89e4eSSatish Balay quantities, otherwise they are stored as 32 bit 556e5c89e4eSSatish Balay 557e5c89e4eSSatish Balay Level: developer 558e5c89e4eSSatish Balay 559e5c89e4eSSatish Balay Notes: 560e5c89e4eSSatish Balay Does a PetscBinaryRead() followed by an MPI_Bcast() 561e5c89e4eSSatish Balay 5621d280d73SBarry Smith PetscBinarySynchronizedRead() uses byte swapping to work on all machines. 563e5c89e4eSSatish Balay Integers are stored on the file as 32 long, regardless of whether 564e5c89e4eSSatish Balay they are stored in the machine as 32 or 64, this means the same 565e5c89e4eSSatish Balay binary file may be read on any machine. 566e5c89e4eSSatish Balay 567e5c89e4eSSatish Balay Concepts: files^synchronized reading of binary files 568e5c89e4eSSatish Balay Concepts: binary files^reading, synchronized 569e5c89e4eSSatish Balay 5704ebed01fSBarry Smith .seealso: PetscBinaryWrite(), PetscBinaryOpen(), PetscBinaryClose(), PetscBinaryRead(), PetscBinarySynchronizedWrite(), 5714ebed01fSBarry Smith PetscBinarySynchronizedSeek() 572e5c89e4eSSatish Balay @*/ 5737087cfbeSBarry Smith PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm comm,int fd,void *p,PetscInt n,PetscDataType type) 574e5c89e4eSSatish Balay { 575e5c89e4eSSatish Balay PetscErrorCode ierr; 576e5c89e4eSSatish Balay PetscMPIInt rank; 577e5c89e4eSSatish Balay MPI_Datatype mtype; 5782d53ad75SBarry Smith char *fname; 5792d53ad75SBarry Smith PetscBool functionload = PETSC_FALSE; 5800298fd71SBarry Smith void *ptmp = NULL; 581e5c89e4eSSatish Balay 582e5c89e4eSSatish Balay PetscFunctionBegin; 5832d53ad75SBarry Smith if (type == PETSC_FUNCTION) { 5842d53ad75SBarry Smith functionload = PETSC_TRUE; 5852d53ad75SBarry Smith n = 64; 5862d53ad75SBarry Smith type = PETSC_CHAR; 5872d53ad75SBarry Smith ptmp = p; 5882d53ad75SBarry Smith /* warning memory leak */ 58998da9c48SSatish Balay fname = (char*)malloc(64*sizeof(char)); 5902d53ad75SBarry Smith p = (void*)fname; 5912d53ad75SBarry Smith } 5922d53ad75SBarry Smith 593e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 594e5c89e4eSSatish Balay if (!rank) { 595e5c89e4eSSatish Balay ierr = PetscBinaryRead(fd,p,n,type);CHKERRQ(ierr); 596e5c89e4eSSatish Balay } 597e5c89e4eSSatish Balay ierr = PetscDataTypeToMPIDataType(type,&mtype);CHKERRQ(ierr); 598e5c89e4eSSatish Balay ierr = MPI_Bcast(p,n,mtype,0,comm);CHKERRQ(ierr); 5992d53ad75SBarry Smith 6002d53ad75SBarry Smith if (functionload) { 6012d53ad75SBarry Smith #if defined(PETSC_SERIALIZE_FUNCTIONS) 6020298fd71SBarry Smith ierr = PetscDLLibrarySym(PETSC_COMM_SELF,&PetscDLLibrariesLoaded,NULL,fname,(void**)ptmp);CHKERRQ(ierr); 6032d53ad75SBarry Smith #else 6040298fd71SBarry Smith *(void**)ptmp = NULL; 6052d53ad75SBarry Smith #endif 6062d53ad75SBarry Smith } 607e5c89e4eSSatish Balay PetscFunctionReturn(0); 608e5c89e4eSSatish Balay } 609e5c89e4eSSatish Balay 610e5c89e4eSSatish Balay #undef __FUNCT__ 6111d280d73SBarry Smith #define __FUNCT__ "PetscBinarySynchronizedWrite" 612e5c89e4eSSatish Balay /*@C 6131d280d73SBarry Smith PetscBinarySynchronizedWrite - writes to a binary file. 614e5c89e4eSSatish Balay 615e5c89e4eSSatish Balay Collective on MPI_Comm 616e5c89e4eSSatish Balay 617e5c89e4eSSatish Balay Input Parameters: 618e5c89e4eSSatish Balay + comm - the MPI communicator 619e5c89e4eSSatish Balay . fd - the file 620e5c89e4eSSatish Balay . n - the number of items to write 621e5c89e4eSSatish Balay . p - the buffer 622e5c89e4eSSatish Balay . istemp - the buffer may be changed 623e5c89e4eSSatish Balay - type - the type of items to write (PETSC_INT, PETSC_DOUBLE or PETSC_SCALAR) 624e5c89e4eSSatish Balay 625e5c89e4eSSatish Balay Level: developer 626e5c89e4eSSatish Balay 627e5c89e4eSSatish Balay Notes: 628e5c89e4eSSatish Balay Process 0 does a PetscBinaryWrite() 629e5c89e4eSSatish Balay 6301d280d73SBarry Smith PetscBinarySynchronizedWrite() uses byte swapping to work on all machines. 631e5c89e4eSSatish Balay Integers are stored on the file as 32 long, regardless of whether 632e5c89e4eSSatish Balay they are stored in the machine as 32 or 64, this means the same 633e5c89e4eSSatish Balay binary file may be read on any machine. 634e5c89e4eSSatish Balay 635300a7f5bSBarry Smith Notes: because byte-swapping may be done on the values in data it cannot be declared const 636300a7f5bSBarry Smith 6371d280d73SBarry Smith WARNING: This is NOT like PetscSynchronizedFPrintf()! This routine ignores calls on all but process 0, 6381d280d73SBarry Smith while PetscSynchronizedFPrintf() has all processes print their strings in order. 6391d280d73SBarry Smith 640e5c89e4eSSatish Balay Concepts: files^synchronized writing of binary files 641e5c89e4eSSatish Balay Concepts: binary files^reading, synchronized 642e5c89e4eSSatish Balay 6434ebed01fSBarry Smith .seealso: PetscBinaryWrite(), PetscBinaryOpen(), PetscBinaryClose(), PetscBinaryRead(), PetscBinarySynchronizedRead(), 6444ebed01fSBarry Smith PetscBinarySynchronizedSeek() 645e5c89e4eSSatish Balay @*/ 6467087cfbeSBarry Smith PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm comm,int fd,void *p,PetscInt n,PetscDataType type,PetscBool istemp) 647e5c89e4eSSatish Balay { 648e5c89e4eSSatish Balay PetscErrorCode ierr; 649e5c89e4eSSatish Balay PetscMPIInt rank; 650e5c89e4eSSatish Balay 651e5c89e4eSSatish Balay PetscFunctionBegin; 652e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 653e5c89e4eSSatish Balay if (!rank) { 654e5c89e4eSSatish Balay ierr = PetscBinaryWrite(fd,p,n,type,istemp);CHKERRQ(ierr); 655e5c89e4eSSatish Balay } 656e5c89e4eSSatish Balay PetscFunctionReturn(0); 657e5c89e4eSSatish Balay } 658e5c89e4eSSatish Balay 659e5c89e4eSSatish Balay #undef __FUNCT__ 6601d280d73SBarry Smith #define __FUNCT__ "PetscBinarySynchronizedSeek" 661e5c89e4eSSatish Balay /*@C 6621d280d73SBarry Smith PetscBinarySynchronizedSeek - Moves the file pointer on a PETSc binary file. 663e5c89e4eSSatish Balay 664e5c89e4eSSatish Balay 665e5c89e4eSSatish Balay Input Parameters: 666e5c89e4eSSatish Balay + fd - the file 667e5c89e4eSSatish Balay . whence - if PETSC_BINARY_SEEK_SET then size is an absolute location in the file 668e5c89e4eSSatish Balay if PETSC_BINARY_SEEK_CUR then size is offset from current location 669e5c89e4eSSatish Balay if PETSC_BINARY_SEEK_END then size is offset from end of file 670e5c89e4eSSatish Balay - off - number of bytes to move. Use PETSC_BINARY_INT_SIZE, PETSC_BINARY_SCALAR_SIZE, 671e5c89e4eSSatish Balay etc. in your calculation rather than sizeof() to compute byte lengths. 672e5c89e4eSSatish Balay 673e5c89e4eSSatish Balay Output Parameter: 674e5c89e4eSSatish Balay . offset - new offset in file 675e5c89e4eSSatish Balay 676e5c89e4eSSatish Balay Level: developer 677e5c89e4eSSatish Balay 678e5c89e4eSSatish Balay Notes: 679e5c89e4eSSatish Balay Integers are stored on the file as 32 long, regardless of whether 680e5c89e4eSSatish Balay they are stored in the machine as 32 or 64, this means the same 681e5c89e4eSSatish Balay binary file may be read on any machine. Hence you CANNOT use sizeof() 682e5c89e4eSSatish Balay to determine the offset or location. 683e5c89e4eSSatish Balay 684e5c89e4eSSatish Balay Concepts: binary files^seeking 685e5c89e4eSSatish Balay Concepts: files^seeking in binary 686e5c89e4eSSatish Balay 6874ebed01fSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscBinaryOpen(), PetscBinarySynchronizedWrite(), PetscBinarySynchronizedRead(), 6884ebed01fSBarry Smith PetscBinarySynchronizedSeek() 689e5c89e4eSSatish Balay @*/ 6907087cfbeSBarry Smith PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm comm,int fd,off_t off,PetscBinarySeekType whence,off_t *offset) 691e5c89e4eSSatish Balay { 692e5c89e4eSSatish Balay PetscErrorCode ierr; 693e5c89e4eSSatish Balay PetscMPIInt rank; 694e5c89e4eSSatish Balay 695e5c89e4eSSatish Balay PetscFunctionBegin; 696e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 697e5c89e4eSSatish Balay if (!rank) { 698e5c89e4eSSatish Balay ierr = PetscBinarySeek(fd,off,whence,offset);CHKERRQ(ierr); 699e5c89e4eSSatish Balay } 700e5c89e4eSSatish Balay PetscFunctionReturn(0); 701e5c89e4eSSatish Balay } 702e5c89e4eSSatish Balay 7030fc9d207SBarry Smith #if defined(PETSC_HAVE_MPIIO) 704e39fd77fSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 705e39fd77fSBarry Smith 706951e3c8eSBarry Smith #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 707e39fd77fSBarry Smith /* 708e39fd77fSBarry Smith MPICH does not provide the external32 representation for MPI_File_set_view() so we need to provide the functions. 709e39fd77fSBarry Smith These are set into MPI in PetscInitialize() via MPI_Register_datarep() 710e39fd77fSBarry Smith 711e39fd77fSBarry Smith Note I use PetscMPIInt for the MPI error codes since that is what MPI uses (instead of the standard PetscErrorCode) 712e39fd77fSBarry Smith 713951e3c8eSBarry Smith The next three routines are not used because MPICH does not support their use 714e39fd77fSBarry Smith 715e39fd77fSBarry Smith */ 7168cc058d9SJed Brown PETSC_EXTERN PetscMPIInt PetscDataRep_extent_fn(MPI_Datatype datatype,MPI_Aint *file_extent,void *extra_state) 717e39fd77fSBarry Smith { 718e39fd77fSBarry Smith MPI_Aint ub; 719e39fd77fSBarry Smith PetscMPIInt ierr; 720e39fd77fSBarry Smith 721e39fd77fSBarry Smith ierr = MPI_Type_get_extent(datatype,&ub,file_extent); 722e39fd77fSBarry Smith return ierr; 723e39fd77fSBarry Smith } 724e39fd77fSBarry Smith 7258cc058d9SJed Brown PETSC_EXTERN PetscMPIInt PetscDataRep_read_conv_fn(void *userbuf, MPI_Datatype datatype,PetscMPIInt count,void *filebuf, MPI_Offset position,void *extra_state) 726e39fd77fSBarry Smith { 727e39fd77fSBarry Smith PetscDataType pdtype; 728e39fd77fSBarry Smith PetscMPIInt ierr; 729e39fd77fSBarry Smith size_t dsize; 730e39fd77fSBarry Smith 731e39fd77fSBarry Smith ierr = PetscMPIDataTypeToPetscDataType(datatype,&pdtype);CHKERRQ(ierr); 732e39fd77fSBarry Smith ierr = PetscDataTypeGetSize(pdtype,&dsize);CHKERRQ(ierr); 733e39fd77fSBarry Smith 734e39fd77fSBarry Smith /* offset is given in units of MPI_Datatype */ 735e39fd77fSBarry Smith userbuf = ((char*)userbuf) + dsize*position; 736e39fd77fSBarry Smith 737e39fd77fSBarry Smith ierr = PetscMemcpy(userbuf,filebuf,count*dsize);CHKERRQ(ierr); 738e39fd77fSBarry Smith ierr = PetscByteSwap(userbuf,pdtype,count);CHKERRQ(ierr); 739e39fd77fSBarry Smith return ierr; 740e39fd77fSBarry Smith } 741e39fd77fSBarry Smith 742e39fd77fSBarry Smith PetscMPIInt PetscDataRep_write_conv_fn(void *userbuf, MPI_Datatype datatype,PetscMPIInt count,void *filebuf, MPI_Offset position,void *extra_state) 743e39fd77fSBarry Smith { 744e39fd77fSBarry Smith PetscDataType pdtype; 745e39fd77fSBarry Smith PetscMPIInt ierr; 746e39fd77fSBarry Smith size_t dsize; 747e39fd77fSBarry Smith 748e39fd77fSBarry Smith ierr = PetscMPIDataTypeToPetscDataType(datatype,&pdtype);CHKERRQ(ierr); 749e39fd77fSBarry Smith ierr = PetscDataTypeGetSize(pdtype,&dsize);CHKERRQ(ierr); 750e39fd77fSBarry Smith 751e39fd77fSBarry Smith /* offset is given in units of MPI_Datatype */ 752e39fd77fSBarry Smith userbuf = ((char*)userbuf) + dsize*position; 753e39fd77fSBarry Smith 754e39fd77fSBarry Smith ierr = PetscMemcpy(filebuf,userbuf,count*dsize);CHKERRQ(ierr); 755e39fd77fSBarry Smith ierr = PetscByteSwap(filebuf,pdtype,count);CHKERRQ(ierr); 756e39fd77fSBarry Smith return ierr; 757e39fd77fSBarry Smith } 758951e3c8eSBarry Smith #endif 759e39fd77fSBarry Smith 7601c91e6bcSJed Brown #undef __FUNCT__ 7611c91e6bcSJed Brown #define __FUNCT__ "MPIU_File_write_all" 762e39fd77fSBarry Smith PetscErrorCode MPIU_File_write_all(MPI_File fd,void *data,PetscMPIInt cnt,MPI_Datatype dtype,MPI_Status *status) 763e39fd77fSBarry Smith { 764e39fd77fSBarry Smith PetscErrorCode ierr; 765e39fd77fSBarry Smith PetscDataType pdtype; 766e39fd77fSBarry Smith 767e39fd77fSBarry Smith PetscFunctionBegin; 768e39fd77fSBarry Smith ierr = PetscMPIDataTypeToPetscDataType(dtype,&pdtype);CHKERRQ(ierr); 769e39fd77fSBarry Smith ierr = PetscByteSwap(data,pdtype,cnt);CHKERRQ(ierr); 770e39fd77fSBarry Smith ierr = MPI_File_write_all(fd,data,cnt,dtype,status);CHKERRQ(ierr); 771e39fd77fSBarry Smith ierr = PetscByteSwap(data,pdtype,cnt);CHKERRQ(ierr); 772a6796414SBarry Smith PetscFunctionReturn(0); 773e39fd77fSBarry Smith } 774e39fd77fSBarry Smith 7751c91e6bcSJed Brown #undef __FUNCT__ 7761c91e6bcSJed Brown #define __FUNCT__ "MPIU_File_read_all" 777e39fd77fSBarry Smith PetscErrorCode MPIU_File_read_all(MPI_File fd,void *data,PetscMPIInt cnt,MPI_Datatype dtype,MPI_Status *status) 778e39fd77fSBarry Smith { 779e39fd77fSBarry Smith PetscErrorCode ierr; 780e39fd77fSBarry Smith PetscDataType pdtype; 781e39fd77fSBarry Smith 782e39fd77fSBarry Smith PetscFunctionBegin; 783e39fd77fSBarry Smith ierr = PetscMPIDataTypeToPetscDataType(dtype,&pdtype);CHKERRQ(ierr); 784e39fd77fSBarry Smith ierr = MPI_File_read_all(fd,data,cnt,dtype,status);CHKERRQ(ierr); 785e39fd77fSBarry Smith ierr = PetscByteSwap(data,pdtype,cnt);CHKERRQ(ierr); 786a6796414SBarry Smith PetscFunctionReturn(0); 787e39fd77fSBarry Smith } 788e39fd77fSBarry Smith #endif 789951e3c8eSBarry Smith #endif 790