xref: /petsc/src/sys/memory/mtr.c (revision f0ba7cfc4d252c71d2b24195b126d66368c102fd)
17d0a6c19SBarry Smith 
2e5c89e4eSSatish Balay /*
3e5c89e4eSSatish Balay      Interface to malloc() and free(). This code allows for
4e5c89e4eSSatish Balay   logging of memory usage and some error checking
5e5c89e4eSSatish Balay */
6c6db04a5SJed Brown #include <petscsys.h>           /*I "petscsys.h" I*/
7665c2dedSJed Brown #include <petscviewer.h>
8e5c89e4eSSatish Balay #if defined(PETSC_HAVE_MALLOC_H)
9e5c89e4eSSatish Balay #include <malloc.h>
10e5c89e4eSSatish Balay #endif
11e5c89e4eSSatish Balay 
12e5c89e4eSSatish Balay 
13e5c89e4eSSatish Balay /*
14e5c89e4eSSatish Balay      These are defined in mal.c and ensure that malloced space is PetscScalar aligned
15e5c89e4eSSatish Balay */
16efca3c55SSatish Balay extern PetscErrorCode  PetscMallocAlign(size_t,int,const char[],const char[],void**);
17efca3c55SSatish Balay extern PetscErrorCode  PetscFreeAlign(void*,int,const char[],const char[]);
18efca3c55SSatish Balay extern PetscErrorCode  PetscTrMallocDefault(size_t,int,const char[],const char[],void**);
19efca3c55SSatish Balay extern PetscErrorCode  PetscTrFreeDefault(void*,int,const char[],const char[]);
20e5c89e4eSSatish Balay 
21e5c89e4eSSatish Balay 
220700a824SBarry Smith #define CLASSID_VALUE  ((PetscClassId) 0xf0e0d0c9)
230700a824SBarry Smith #define ALREADY_FREED  ((PetscClassId) 0x0f0e0d9c)
24e5c89e4eSSatish Balay 
25e5c89e4eSSatish Balay typedef struct _trSPACE {
26e5c89e4eSSatish Balay   size_t       size;
27e5c89e4eSSatish Balay   int          id;
28e5c89e4eSSatish Balay   int          lineno;
29e5c89e4eSSatish Balay   const char   *filename;
30e5c89e4eSSatish Balay   const char   *functionname;
310700a824SBarry Smith   PetscClassId classid;
328bf1f09cSShri Abhyankar #if defined(PETSC_USE_DEBUG)
33e5c89e4eSSatish Balay   PetscStack   stack;
34e5c89e4eSSatish Balay #endif
35e5c89e4eSSatish Balay   struct _trSPACE *next,*prev;
36e5c89e4eSSatish Balay } TRSPACE;
37e5c89e4eSSatish Balay 
3825b53cc9SJed Brown /* HEADER_BYTES is the number of bytes in a PetscMalloc() header.
3925b53cc9SJed Brown    It is sizeof(TRSPACE) padded to be a multiple of PETSC_MEMALIGN.
4025b53cc9SJed Brown */
41e5c89e4eSSatish Balay 
42a64a8e02SBarry Smith #define HEADER_BYTES  ((sizeof(TRSPACE)+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1))
43e5c89e4eSSatish Balay 
44e5c89e4eSSatish Balay 
4525b53cc9SJed Brown /* This union is used to insure that the block passed to the user retains
4625b53cc9SJed Brown    a minimum alignment of PETSC_MEMALIGN.
4725b53cc9SJed Brown */
48e5c89e4eSSatish Balay typedef union {
49e5c89e4eSSatish Balay   TRSPACE sp;
5025b53cc9SJed Brown   char    v[HEADER_BYTES];
51e5c89e4eSSatish Balay } TrSPACE;
52e5c89e4eSSatish Balay 
53b022a5c1SBarry Smith 
54e5c89e4eSSatish Balay static size_t    TRallocated  = 0;
55e5c89e4eSSatish Balay static int       TRfrags      = 0;
56*f0ba7cfcSLisandro Dalcin static TRSPACE   *TRhead      = NULL;
57e5c89e4eSSatish Balay static int       TRid         = 0;
58ace3abfcSBarry Smith static PetscBool TRdebugLevel = PETSC_FALSE;
59e5c89e4eSSatish Balay static size_t    TRMaxMem     = 0;
60e5c89e4eSSatish Balay /*
61e5c89e4eSSatish Balay       Arrays to log information on all Mallocs
62e5c89e4eSSatish Balay */
63*f0ba7cfcSLisandro Dalcin static int        PetscLogMallocMax       = 10000;
64*f0ba7cfcSLisandro Dalcin static int        PetscLogMalloc          = -1;
65574034a9SJed Brown static size_t     PetscLogMallocThreshold = 0;
66e5c89e4eSSatish Balay static size_t     *PetscLogMallocLength;
67efca3c55SSatish Balay static const char **PetscLogMallocFile,**PetscLogMallocFunction;
68e5c89e4eSSatish Balay 
69e5c89e4eSSatish Balay #undef __FUNCT__
70b022a5c1SBarry Smith #define __FUNCT__ "PetscSetUseTrMalloc_Private"
71b022a5c1SBarry Smith PetscErrorCode PetscSetUseTrMalloc_Private(void)
72b022a5c1SBarry Smith {
73b022a5c1SBarry Smith   PetscErrorCode ierr;
74b022a5c1SBarry Smith 
75b022a5c1SBarry Smith   PetscFunctionBegin;
76b022a5c1SBarry Smith   ierr = PetscMallocSet(PetscTrMallocDefault,PetscTrFreeDefault);CHKERRQ(ierr);
77a297a907SKarl Rupp 
78b022a5c1SBarry Smith   TRallocated       = 0;
79b022a5c1SBarry Smith   TRfrags           = 0;
80*f0ba7cfcSLisandro Dalcin   TRhead            = NULL;
81b022a5c1SBarry Smith   TRid              = 0;
82b022a5c1SBarry Smith   TRdebugLevel      = PETSC_FALSE;
83b022a5c1SBarry Smith   TRMaxMem          = 0;
84b022a5c1SBarry Smith   PetscLogMallocMax = 10000;
85b022a5c1SBarry Smith   PetscLogMalloc    = -1;
86b022a5c1SBarry Smith   PetscFunctionReturn(0);
87b022a5c1SBarry Smith }
88b022a5c1SBarry Smith 
89b022a5c1SBarry Smith #undef __FUNCT__
90e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocValidate"
91e5c89e4eSSatish Balay /*@C
92e5c89e4eSSatish Balay    PetscMallocValidate - Test the memory for corruption.  This can be used to
93e5c89e4eSSatish Balay    check for memory overwrites.
94e5c89e4eSSatish Balay 
95e5c89e4eSSatish Balay    Input Parameter:
96e5c89e4eSSatish Balay +  line - line number where call originated.
97e5c89e4eSSatish Balay .  function - name of function calling
98efca3c55SSatish Balay -  file - file where function is
99e5c89e4eSSatish Balay 
100e5c89e4eSSatish Balay    Return value:
101e5c89e4eSSatish Balay    The number of errors detected.
102e5c89e4eSSatish Balay 
103e5c89e4eSSatish Balay    Output Effect:
104e5c89e4eSSatish Balay    Error messages are written to stdout.
105e5c89e4eSSatish Balay 
106e5c89e4eSSatish Balay    Level: advanced
107e5c89e4eSSatish Balay 
108e5c89e4eSSatish Balay    Notes:
109e5c89e4eSSatish Balay     You should generally use CHKMEMQ as a short cut for calling this
110e5c89e4eSSatish Balay     routine.
111e5c89e4eSSatish Balay 
112efca3c55SSatish Balay     The line, function, file are given by the C preprocessor as
113efca3c55SSatish Balay     __LINE__, __FUNCT__, __FILE__
114e5c89e4eSSatish Balay 
115e5c89e4eSSatish Balay     The Fortran calling sequence is simply PetscMallocValidate(ierr)
116e5c89e4eSSatish Balay 
117e5c89e4eSSatish Balay    No output is generated if there are no problems detected.
118e5c89e4eSSatish Balay 
119e5c89e4eSSatish Balay .seealso: CHKMEMQ
120e5c89e4eSSatish Balay 
121e5c89e4eSSatish Balay @*/
122efca3c55SSatish Balay PetscErrorCode  PetscMallocValidate(int line,const char function[],const char file[])
123e5c89e4eSSatish Balay {
1246c093d5bSvictor   TRSPACE      *head,*lasthead;
125e5c89e4eSSatish Balay   char         *a;
1260700a824SBarry Smith   PetscClassId *nend;
127e5c89e4eSSatish Balay 
128e5c89e4eSSatish Balay   PetscFunctionBegin;
1296c093d5bSvictor   head = TRhead; lasthead = NULL;
130e5c89e4eSSatish Balay   while (head) {
1310700a824SBarry Smith     if (head->classid != CLASSID_VALUE) {
132efca3c55SSatish Balay       (*PetscErrorPrintf)("PetscMallocValidate: error detected at  %s() line %d in %s\n",function,line,file);
133e5c89e4eSSatish Balay       (*PetscErrorPrintf)("Memory at address %p is corrupted\n",head);
134e5c89e4eSSatish Balay       (*PetscErrorPrintf)("Probably write past beginning or end of array\n");
135efca3c55SSatish Balay       if (lasthead) (*PetscErrorPrintf)("Last intact block allocated in %s() line %d in %s\n",lasthead->functionname,lasthead->lineno,lasthead->filename);
136e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEMC," ");
137e5c89e4eSSatish Balay     }
138e5c89e4eSSatish Balay     a    = (char*)(((TrSPACE*)head) + 1);
1390700a824SBarry Smith     nend = (PetscClassId*)(a + head->size);
1400700a824SBarry Smith     if (*nend != CLASSID_VALUE) {
141efca3c55SSatish Balay       (*PetscErrorPrintf)("PetscMallocValidate: error detected at %s() line %d in %s\n",function,line,file);
142e5c89e4eSSatish Balay       if (*nend == ALREADY_FREED) {
143e5c89e4eSSatish Balay         (*PetscErrorPrintf)("Memory [id=%d(%.0f)] at address %p already freed\n",head->id,(PetscLogDouble)head->size,a);
144e32f2f54SBarry Smith         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEMC," ");
145e5c89e4eSSatish Balay       } else {
146e5c89e4eSSatish Balay         (*PetscErrorPrintf)("Memory [id=%d(%.0f)] at address %p is corrupted (probably write past end of array)\n",head->id,(PetscLogDouble)head->size,a);
147efca3c55SSatish Balay         (*PetscErrorPrintf)("Memory originally allocated in %s() line %d in %s\n",head->functionname,head->lineno,head->filename);
148e32f2f54SBarry Smith         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEMC," ");
149e5c89e4eSSatish Balay       }
150e5c89e4eSSatish Balay     }
1516c093d5bSvictor     lasthead = head;
152e5c89e4eSSatish Balay     head     = head->next;
153e5c89e4eSSatish Balay   }
154e5c89e4eSSatish Balay   PetscFunctionReturn(0);
155e5c89e4eSSatish Balay }
156e5c89e4eSSatish Balay 
157e5c89e4eSSatish Balay #undef __FUNCT__
158e5c89e4eSSatish Balay #define __FUNCT__ "PetscTrMallocDefault"
159e5c89e4eSSatish Balay /*
160e5c89e4eSSatish Balay     PetscTrMallocDefault - Malloc with tracing.
161e5c89e4eSSatish Balay 
162e5c89e4eSSatish Balay     Input Parameters:
163e5c89e4eSSatish Balay +   a   - number of bytes to allocate
164e5c89e4eSSatish Balay .   lineno - line number where used.  Use __LINE__ for this
165e5c89e4eSSatish Balay .   function - function calling routine. Use __FUNCT__ for this
166efca3c55SSatish Balay -   filename  - file name where used.  Use __FILE__ for this
167e5c89e4eSSatish Balay 
168e5c89e4eSSatish Balay     Returns:
169e5c89e4eSSatish Balay     double aligned pointer to requested storage, or null if not
170e5c89e4eSSatish Balay     available.
171e5c89e4eSSatish Balay  */
172efca3c55SSatish Balay PetscErrorCode  PetscTrMallocDefault(size_t a,int lineno,const char function[],const char filename[],void **result)
173e5c89e4eSSatish Balay {
174e5c89e4eSSatish Balay   TRSPACE        *head;
175e5c89e4eSSatish Balay   char           *inew;
176e5c89e4eSSatish Balay   size_t         nsize;
177e5c89e4eSSatish Balay   PetscErrorCode ierr;
178e5c89e4eSSatish Balay 
179e5c89e4eSSatish Balay   PetscFunctionBegin;
180*f0ba7cfcSLisandro Dalcin   /* Do not try to handle empty blocks */
181*f0ba7cfcSLisandro Dalcin   if (!a) { *result = NULL; PetscFunctionReturn(0); }
182*f0ba7cfcSLisandro Dalcin 
183e5c89e4eSSatish Balay   if (TRdebugLevel) {
184efca3c55SSatish Balay     ierr = PetscMallocValidate(lineno,function,filename); if (ierr) PetscFunctionReturn(ierr);
185e5c89e4eSSatish Balay   }
186e5c89e4eSSatish Balay 
18725b53cc9SJed Brown   nsize = (a + (PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1);
188efca3c55SSatish Balay   ierr  = PetscMallocAlign(nsize+sizeof(TrSPACE)+sizeof(PetscClassId),lineno,function,filename,(void**)&inew);CHKERRQ(ierr);
189e5c89e4eSSatish Balay 
190e5c89e4eSSatish Balay   head  = (TRSPACE*)inew;
191e5c89e4eSSatish Balay   inew += sizeof(TrSPACE);
192e5c89e4eSSatish Balay 
193e5c89e4eSSatish Balay   if (TRhead) TRhead->prev = head;
194e5c89e4eSSatish Balay   head->next   = TRhead;
195e5c89e4eSSatish Balay   TRhead       = head;
196*f0ba7cfcSLisandro Dalcin   head->prev   = NULL;
197e5c89e4eSSatish Balay   head->size   = nsize;
198e5c89e4eSSatish Balay   head->id     = TRid;
199e5c89e4eSSatish Balay   head->lineno = lineno;
200e5c89e4eSSatish Balay 
201e5c89e4eSSatish Balay   head->filename                 = filename;
202e5c89e4eSSatish Balay   head->functionname             = function;
2030700a824SBarry Smith   head->classid                  = CLASSID_VALUE;
2040700a824SBarry Smith   *(PetscClassId*)(inew + nsize) = CLASSID_VALUE;
205e5c89e4eSSatish Balay 
206e5c89e4eSSatish Balay   TRallocated += nsize;
207a297a907SKarl Rupp   if (TRallocated > TRMaxMem) TRMaxMem = TRallocated;
208e5c89e4eSSatish Balay   TRfrags++;
209e5c89e4eSSatish Balay 
2108bf1f09cSShri Abhyankar #if defined(PETSC_USE_DEBUG)
21176386721SLisandro Dalcin   if (PetscStackActive()) {
2121f46d60fSShri Abhyankar     ierr = PetscStackCopy((PetscStack*)PetscThreadLocalGetValue(petscstack),&head->stack);CHKERRQ(ierr);
2132c9581d2SBarry Smith     /* fix the line number to where the malloc() was called, not the PetscFunctionBegin; */
2142c9581d2SBarry Smith     head->stack.line[head->stack.currentsize-2] = lineno;
21576386721SLisandro Dalcin   }
216e5c89e4eSSatish Balay #endif
217e5c89e4eSSatish Balay 
218e5c89e4eSSatish Balay   /*
219e5c89e4eSSatish Balay          Allow logging of all mallocs made
220e5c89e4eSSatish Balay   */
221574034a9SJed Brown   if (PetscLogMalloc > -1 && PetscLogMalloc < PetscLogMallocMax && a >= PetscLogMallocThreshold) {
222e5c89e4eSSatish Balay     if (!PetscLogMalloc) {
223e5c89e4eSSatish Balay       PetscLogMallocLength = (size_t*)malloc(PetscLogMallocMax*sizeof(size_t));
224e32f2f54SBarry Smith       if (!PetscLogMallocLength) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM," ");
225a297a907SKarl Rupp 
226a2ea699eSBarry Smith       PetscLogMallocFile = (const char**)malloc(PetscLogMallocMax*sizeof(char*));
227e32f2f54SBarry Smith       if (!PetscLogMallocFile) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM," ");
228a297a907SKarl Rupp 
229a2ea699eSBarry Smith       PetscLogMallocFunction = (const char**)malloc(PetscLogMallocMax*sizeof(char*));
230e32f2f54SBarry Smith       if (!PetscLogMallocFunction) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM," ");
231e5c89e4eSSatish Balay     }
232e5c89e4eSSatish Balay     PetscLogMallocLength[PetscLogMalloc]     = nsize;
233e5c89e4eSSatish Balay     PetscLogMallocFile[PetscLogMalloc]       = filename;
234e5c89e4eSSatish Balay     PetscLogMallocFunction[PetscLogMalloc++] = function;
235e5c89e4eSSatish Balay   }
236e5c89e4eSSatish Balay   *result = (void*)inew;
237e5c89e4eSSatish Balay   PetscFunctionReturn(0);
238e5c89e4eSSatish Balay }
239e5c89e4eSSatish Balay 
240e5c89e4eSSatish Balay 
241e5c89e4eSSatish Balay #undef __FUNCT__
242e5c89e4eSSatish Balay #define __FUNCT__ "PetscTrFreeDefault"
243e5c89e4eSSatish Balay /*
244e5c89e4eSSatish Balay    PetscTrFreeDefault - Free with tracing.
245e5c89e4eSSatish Balay 
246e5c89e4eSSatish Balay    Input Parameters:
247e5c89e4eSSatish Balay .   a    - pointer to a block allocated with PetscTrMalloc
248e5c89e4eSSatish Balay .   lineno - line number where used.  Use __LINE__ for this
249e5c89e4eSSatish Balay .   function - function calling routine. Use __FUNCT__ for this
250e5c89e4eSSatish Balay .   file  - file name where used.  Use __FILE__ for this
251e5c89e4eSSatish Balay  */
252efca3c55SSatish Balay PetscErrorCode  PetscTrFreeDefault(void *aa,int line,const char function[],const char file[])
253e5c89e4eSSatish Balay {
254e5c89e4eSSatish Balay   char           *a = (char*)aa;
255e5c89e4eSSatish Balay   TRSPACE        *head;
256e5c89e4eSSatish Balay   char           *ahead;
257e5c89e4eSSatish Balay   PetscErrorCode ierr;
2580700a824SBarry Smith   PetscClassId   *nend;
259e5c89e4eSSatish Balay 
260e5c89e4eSSatish Balay   PetscFunctionBegin;
261e5c89e4eSSatish Balay   /* Do not try to handle empty blocks */
26249d7da52SJed Brown   if (!a) PetscFunctionReturn(0);
263e5c89e4eSSatish Balay 
264e5c89e4eSSatish Balay   if (TRdebugLevel) {
265efca3c55SSatish Balay     ierr = PetscMallocValidate(line,function,file);CHKERRQ(ierr);
266e5c89e4eSSatish Balay   }
267e5c89e4eSSatish Balay 
268e5c89e4eSSatish Balay   ahead = a;
269e5c89e4eSSatish Balay   a     = a - sizeof(TrSPACE);
270e5c89e4eSSatish Balay   head  = (TRSPACE*)a;
271e5c89e4eSSatish Balay 
2720700a824SBarry Smith   if (head->classid != CLASSID_VALUE) {
273efca3c55SSatish Balay     (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s\n",function,line,file);
274e5c89e4eSSatish Balay     (*PetscErrorPrintf)("Block at address %p is corrupted; cannot free;\nmay be block not allocated with PetscMalloc()\n",a);
275e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEMC,"Bad location or corrupted memory");
276e5c89e4eSSatish Balay   }
2770700a824SBarry Smith   nend = (PetscClassId*)(ahead + head->size);
2780700a824SBarry Smith   if (*nend != CLASSID_VALUE) {
279e5c89e4eSSatish Balay     if (*nend == ALREADY_FREED) {
280efca3c55SSatish Balay       (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s\n",function,line,file);
281e5c89e4eSSatish Balay       (*PetscErrorPrintf)("Block [id=%d(%.0f)] at address %p was already freed\n",head->id,(PetscLogDouble)head->size,a + sizeof(TrSPACE));
282e5c89e4eSSatish Balay       if (head->lineno > 0 && head->lineno < 50000 /* sanity check */) {
283efca3c55SSatish Balay         (*PetscErrorPrintf)("Block freed in %s() line %d in %s\n",head->functionname,head->lineno,head->filename);
284e5c89e4eSSatish Balay       } else {
285efca3c55SSatish Balay         (*PetscErrorPrintf)("Block allocated in %s() line %d in %s\n",head->functionname,-head->lineno,head->filename);
286e5c89e4eSSatish Balay       }
287e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Memory already freed");
288e5c89e4eSSatish Balay     } else {
289e5c89e4eSSatish Balay       /* Damaged tail */
290efca3c55SSatish Balay       (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s\n",function,line,file);
291e5c89e4eSSatish Balay       (*PetscErrorPrintf)("Block [id=%d(%.0f)] at address %p is corrupted (probably write past end of array)\n",head->id,(PetscLogDouble)head->size,a);
292efca3c55SSatish Balay       (*PetscErrorPrintf)("Block allocated in %s() line %d in %s\n",head->functionname,head->lineno,head->filename);
293e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEMC,"Corrupted memory");
294e5c89e4eSSatish Balay     }
295e5c89e4eSSatish Balay   }
296e5c89e4eSSatish Balay   /* Mark the location freed */
297e5c89e4eSSatish Balay   *nend = ALREADY_FREED;
298e5c89e4eSSatish Balay   /* Save location where freed.  If we suspect the line number, mark as  allocated location */
299e5c89e4eSSatish Balay   if (line > 0 && line < 50000) {
300e5c89e4eSSatish Balay     head->lineno       = line;
301e5c89e4eSSatish Balay     head->filename     = file;
302e5c89e4eSSatish Balay     head->functionname = function;
303e5c89e4eSSatish Balay   } else {
304e5c89e4eSSatish Balay     head->lineno = -head->lineno;
305e5c89e4eSSatish Balay   }
306e5c89e4eSSatish Balay   /* zero out memory - helps to find some reuse of already freed memory */
307e5c89e4eSSatish Balay   ierr = PetscMemzero(aa,head->size);CHKERRQ(ierr);
308e5c89e4eSSatish Balay 
309e5c89e4eSSatish Balay   TRallocated -= head->size;
310e5c89e4eSSatish Balay   TRfrags--;
311e5c89e4eSSatish Balay   if (head->prev) head->prev->next = head->next;
312e5c89e4eSSatish Balay   else TRhead = head->next;
313e5c89e4eSSatish Balay 
314e5c89e4eSSatish Balay   if (head->next) head->next->prev = head->prev;
315efca3c55SSatish Balay   ierr = PetscFreeAlign(a,line,function,file);CHKERRQ(ierr);
316e5c89e4eSSatish Balay   PetscFunctionReturn(0);
317e5c89e4eSSatish Balay }
318e5c89e4eSSatish Balay 
319e5c89e4eSSatish Balay 
320e5c89e4eSSatish Balay #undef __FUNCT__
321e5c89e4eSSatish Balay #define __FUNCT__ "PetscMemoryShowUsage"
322fe7fb379SMatthew Knepley /*@C
323e5c89e4eSSatish Balay     PetscMemoryShowUsage - Shows the amount of memory currently being used
324e5c89e4eSSatish Balay         in a communicator.
325e5c89e4eSSatish Balay 
326e5c89e4eSSatish Balay     Collective on PetscViewer
327e5c89e4eSSatish Balay 
328e5c89e4eSSatish Balay     Input Parameter:
329e5c89e4eSSatish Balay +    viewer - the viewer that defines the communicator
330e5c89e4eSSatish Balay -    message - string printed before values
331e5c89e4eSSatish Balay 
332e5c89e4eSSatish Balay     Level: intermediate
333e5c89e4eSSatish Balay 
334e5c89e4eSSatish Balay     Concepts: memory usage
335e5c89e4eSSatish Balay 
3361bb97394SVictor Eijkhout .seealso: PetscMallocDump(), PetscMemoryGetCurrentUsage()
337e5c89e4eSSatish Balay  @*/
3387087cfbeSBarry Smith PetscErrorCode  PetscMemoryShowUsage(PetscViewer viewer,const char message[])
339e5c89e4eSSatish Balay {
340e5c89e4eSSatish Balay   PetscLogDouble allocated,maximum,resident,residentmax;
341e5c89e4eSSatish Balay   PetscErrorCode ierr;
342e5c89e4eSSatish Balay   PetscMPIInt    rank;
343e5c89e4eSSatish Balay   MPI_Comm       comm;
344e5c89e4eSSatish Balay 
345e5c89e4eSSatish Balay   PetscFunctionBegin;
346e5c89e4eSSatish Balay   if (!viewer) viewer = PETSC_VIEWER_STDOUT_WORLD;
347e5c89e4eSSatish Balay   ierr = PetscMallocGetCurrentUsage(&allocated);CHKERRQ(ierr);
348e5c89e4eSSatish Balay   ierr = PetscMallocGetMaximumUsage(&maximum);CHKERRQ(ierr);
349e5c89e4eSSatish Balay   ierr = PetscMemoryGetCurrentUsage(&resident);CHKERRQ(ierr);
350e5c89e4eSSatish Balay   ierr = PetscMemoryGetMaximumUsage(&residentmax);CHKERRQ(ierr);
351e5c89e4eSSatish Balay   if (residentmax > 0) residentmax = PetscMax(resident,residentmax);
352e5c89e4eSSatish Balay   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
353e5c89e4eSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
354e5c89e4eSSatish Balay   ierr = PetscViewerASCIIPrintf(viewer,message);CHKERRQ(ierr);
3557b23a99aSBarry Smith   ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
356e5c89e4eSSatish Balay   if (resident && residentmax && allocated) {
357e5c89e4eSSatish Balay     ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]Current process memory %g max process memory %g\n",rank,allocated,maximum,rank,resident,residentmax);CHKERRQ(ierr);
358e5c89e4eSSatish Balay   } else if (resident && residentmax) {
359e5c89e4eSSatish Balay     ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Run with -malloc to get statistics on PetscMalloc() calls\n[%d]Current process memory %g max process memory %g\n",rank,rank,resident,residentmax);CHKERRQ(ierr);
360e5c89e4eSSatish Balay   } else if (resident && allocated) {
361e5c89e4eSSatish Balay     ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]Current process memory %g, run with -memory_info to get max memory usage\n",rank,allocated,maximum,rank,resident);CHKERRQ(ierr);
362e5c89e4eSSatish Balay   } else if (allocated) {
363e5c89e4eSSatish Balay     ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]OS cannot compute process memory\n",rank,allocated,maximum,rank);CHKERRQ(ierr);
364e5c89e4eSSatish Balay   } else {
365e5c89e4eSSatish Balay     ierr = PetscViewerASCIIPrintf(viewer,"Run with -malloc to get statistics on PetscMalloc() calls\nOS cannot compute process memory\n");CHKERRQ(ierr);
366e5c89e4eSSatish Balay   }
367e5c89e4eSSatish Balay   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
3687b23a99aSBarry Smith   ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
369e5c89e4eSSatish Balay   PetscFunctionReturn(0);
370e5c89e4eSSatish Balay }
371e5c89e4eSSatish Balay 
372e5c89e4eSSatish Balay #undef __FUNCT__
373e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocGetCurrentUsage"
374e5c89e4eSSatish Balay /*@C
375e5c89e4eSSatish Balay     PetscMallocGetCurrentUsage - gets the current amount of memory used that was PetscMalloc()ed
376e5c89e4eSSatish Balay 
377e5c89e4eSSatish Balay     Not Collective
378e5c89e4eSSatish Balay 
379e5c89e4eSSatish Balay     Output Parameters:
380e5c89e4eSSatish Balay .   space - number of bytes currently allocated
381e5c89e4eSSatish Balay 
382e5c89e4eSSatish Balay     Level: intermediate
383e5c89e4eSSatish Balay 
384e5c89e4eSSatish Balay     Concepts: memory usage
385e5c89e4eSSatish Balay 
386e5c89e4eSSatish Balay .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocGetMaximumUsage(), PetscMemoryGetCurrentUsage(),
387e5c89e4eSSatish Balay           PetscMemoryGetMaximumUsage()
388e5c89e4eSSatish Balay  @*/
3897087cfbeSBarry Smith PetscErrorCode  PetscMallocGetCurrentUsage(PetscLogDouble *space)
390e5c89e4eSSatish Balay {
391e5c89e4eSSatish Balay   PetscFunctionBegin;
392e5c89e4eSSatish Balay   *space = (PetscLogDouble) TRallocated;
393e5c89e4eSSatish Balay   PetscFunctionReturn(0);
394e5c89e4eSSatish Balay }
395e5c89e4eSSatish Balay 
396e5c89e4eSSatish Balay #undef __FUNCT__
397e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocGetMaximumUsage"
398e5c89e4eSSatish Balay /*@C
399e5c89e4eSSatish Balay     PetscMallocGetMaximumUsage - gets the maximum amount of memory used that was PetscMalloc()ed at any time
400e5c89e4eSSatish Balay         during this run.
401e5c89e4eSSatish Balay 
402e5c89e4eSSatish Balay     Not Collective
403e5c89e4eSSatish Balay 
404e5c89e4eSSatish Balay     Output Parameters:
405e5c89e4eSSatish Balay .   space - maximum number of bytes ever allocated at one time
406e5c89e4eSSatish Balay 
407e5c89e4eSSatish Balay     Level: intermediate
408e5c89e4eSSatish Balay 
409e5c89e4eSSatish Balay     Concepts: memory usage
410e5c89e4eSSatish Balay 
411e5c89e4eSSatish Balay .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocGetMaximumUsage(), PetscMemoryGetCurrentUsage(),
412e5c89e4eSSatish Balay           PetscMemoryGetCurrentUsage()
413e5c89e4eSSatish Balay  @*/
4147087cfbeSBarry Smith PetscErrorCode  PetscMallocGetMaximumUsage(PetscLogDouble *space)
415e5c89e4eSSatish Balay {
416e5c89e4eSSatish Balay   PetscFunctionBegin;
417e5c89e4eSSatish Balay   *space = (PetscLogDouble) TRMaxMem;
418e5c89e4eSSatish Balay   PetscFunctionReturn(0);
419e5c89e4eSSatish Balay }
420e5c89e4eSSatish Balay 
421a64a8e02SBarry Smith #if defined(PETSC_USE_DEBUG)
422a64a8e02SBarry Smith #undef __FUNCT__
423a64a8e02SBarry Smith #define __FUNCT__ "PetscMallocGetStack"
424a64a8e02SBarry Smith /*@C
425a64a8e02SBarry Smith    PetscMallocGetStack - returns a pointer to the stack for the location in the program a call to PetscMalloc() was used to obtain that memory
426a64a8e02SBarry Smith 
427a64a8e02SBarry Smith    Collective on PETSC_COMM_WORLD
428a64a8e02SBarry Smith 
429a64a8e02SBarry Smith    Input Parameter:
430a64a8e02SBarry Smith .    ptr - the memory location
431a64a8e02SBarry Smith 
432a64a8e02SBarry Smith    Output Paramter:
433a64a8e02SBarry Smith .    stack - the stack indicating where the program allocated this memory
434a64a8e02SBarry Smith 
435a64a8e02SBarry Smith    Level: intermediate
436a64a8e02SBarry Smith 
437a64a8e02SBarry Smith .seealso:  PetscMallocGetCurrentUsage(), PetscMallocDumpLog()
438a64a8e02SBarry Smith @*/
439a64a8e02SBarry Smith PetscErrorCode  PetscMallocGetStack(void *ptr,PetscStack **stack)
440a64a8e02SBarry Smith {
441a64a8e02SBarry Smith   TRSPACE *head;
442a64a8e02SBarry Smith 
443a64a8e02SBarry Smith   PetscFunctionBegin;
444a64a8e02SBarry Smith   head   = (TRSPACE*) (((char*)ptr) - HEADER_BYTES);
445a64a8e02SBarry Smith   *stack = &head->stack;
446a64a8e02SBarry Smith   PetscFunctionReturn(0);
447a64a8e02SBarry Smith }
44876386721SLisandro Dalcin #else
44976386721SLisandro Dalcin #undef __FUNCT__
45076386721SLisandro Dalcin #define __FUNCT__ "PetscMallocGetStack"
45176386721SLisandro Dalcin PetscErrorCode  PetscMallocGetStack(void *ptr,void **stack)
45276386721SLisandro Dalcin {
45376386721SLisandro Dalcin   PetscFunctionBegin;
454*f0ba7cfcSLisandro Dalcin   *stack = NULL;
45576386721SLisandro Dalcin   PetscFunctionReturn(0);
45676386721SLisandro Dalcin }
457a64a8e02SBarry Smith #endif
458a64a8e02SBarry Smith 
459e5c89e4eSSatish Balay #undef __FUNCT__
460e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDump"
461e5c89e4eSSatish Balay /*@C
462e5c89e4eSSatish Balay    PetscMallocDump - Dumps the allocated memory blocks to a file. The information
463e5c89e4eSSatish Balay    printed is: size of space (in bytes), address of space, id of space,
464e5c89e4eSSatish Balay    file in which space was allocated, and line number at which it was
465e5c89e4eSSatish Balay    allocated.
466e5c89e4eSSatish Balay 
467e5c89e4eSSatish Balay    Collective on PETSC_COMM_WORLD
468e5c89e4eSSatish Balay 
469e5c89e4eSSatish Balay    Input Parameter:
470e5c89e4eSSatish Balay .  fp  - file pointer.  If fp is NULL, stdout is assumed.
471e5c89e4eSSatish Balay 
472e5c89e4eSSatish Balay    Options Database Key:
473e5c89e4eSSatish Balay .  -malloc_dump - Dumps unfreed memory during call to PetscFinalize()
474e5c89e4eSSatish Balay 
475e5c89e4eSSatish Balay    Level: intermediate
476e5c89e4eSSatish Balay 
477e5c89e4eSSatish Balay    Fortran Note:
478e5c89e4eSSatish Balay    The calling sequence in Fortran is PetscMallocDump(integer ierr)
479e5c89e4eSSatish Balay    The fp defaults to stdout.
480e5c89e4eSSatish Balay 
481e5c89e4eSSatish Balay    Notes: uses MPI_COMM_WORLD, because this may be called in PetscFinalize() after PETSC_COMM_WORLD
482e5c89e4eSSatish Balay           has been freed.
483e5c89e4eSSatish Balay 
484e5c89e4eSSatish Balay    Concepts: memory usage
485e5c89e4eSSatish Balay    Concepts: memory bleeding
486e5c89e4eSSatish Balay    Concepts: bleeding memory
487e5c89e4eSSatish Balay 
4889e9a1f8fSvictor .seealso:  PetscMallocGetCurrentUsage(), PetscMallocDumpLog()
489e5c89e4eSSatish Balay @*/
4907087cfbeSBarry Smith PetscErrorCode  PetscMallocDump(FILE *fp)
491e5c89e4eSSatish Balay {
492e5c89e4eSSatish Balay   TRSPACE        *head;
493e5c89e4eSSatish Balay   PetscErrorCode ierr;
494e5c89e4eSSatish Balay   PetscMPIInt    rank;
495e5c89e4eSSatish Balay 
496e5c89e4eSSatish Balay   PetscFunctionBegin;
497e5c89e4eSSatish Balay   ierr = MPI_Comm_rank(MPI_COMM_WORLD,&rank);CHKERRQ(ierr);
498da9f1d6bSBarry Smith   if (!fp) fp = PETSC_STDOUT;
499a297a907SKarl Rupp   if (TRallocated > 0) fprintf(fp,"[%d]Total space allocated %.0f bytes\n",rank,(PetscLogDouble)TRallocated);
500e5c89e4eSSatish Balay   head = TRhead;
501e5c89e4eSSatish Balay   while (head) {
502efca3c55SSatish Balay     fprintf(fp,"[%2d]%.0f bytes %s() line %d in %s\n",rank,(PetscLogDouble)head->size,head->functionname,head->lineno,head->filename);
5038bf1f09cSShri Abhyankar #if defined(PETSC_USE_DEBUG)
504e5c89e4eSSatish Balay     ierr = PetscStackPrint(&head->stack,fp);CHKERRQ(ierr);
505e5c89e4eSSatish Balay #endif
506e5c89e4eSSatish Balay     head = head->next;
507e5c89e4eSSatish Balay   }
508e5c89e4eSSatish Balay   PetscFunctionReturn(0);
509e5c89e4eSSatish Balay }
510e5c89e4eSSatish Balay 
511e5c89e4eSSatish Balay /* ---------------------------------------------------------------------------- */
512e5c89e4eSSatish Balay 
513e5c89e4eSSatish Balay #undef __FUNCT__
514e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocSetDumpLog"
515e5c89e4eSSatish Balay /*@C
516e5c89e4eSSatish Balay     PetscMallocSetDumpLog - Activates logging of all calls to PetscMalloc().
517e5c89e4eSSatish Balay 
518e5c89e4eSSatish Balay     Not Collective
519e5c89e4eSSatish Balay 
520e5c89e4eSSatish Balay     Options Database Key:
521574034a9SJed Brown +  -malloc_log <filename> - Activates PetscMallocDumpLog()
522574034a9SJed Brown -  -malloc_log_threshold <min> - Activates logging and sets a minimum size
523e5c89e4eSSatish Balay 
524e5c89e4eSSatish Balay     Level: advanced
525e5c89e4eSSatish Balay 
526574034a9SJed Brown .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocSetDumpLogThreshold()
527e5c89e4eSSatish Balay @*/
5287087cfbeSBarry Smith PetscErrorCode PetscMallocSetDumpLog(void)
529e5c89e4eSSatish Balay {
53021b680ceSJed Brown   PetscErrorCode ierr;
53121b680ceSJed Brown 
532e5c89e4eSSatish Balay   PetscFunctionBegin;
533e5c89e4eSSatish Balay   PetscLogMalloc = 0;
534a297a907SKarl Rupp 
53521b680ceSJed Brown   ierr = PetscMemorySetGetMaximumUsage();CHKERRQ(ierr);
536e5c89e4eSSatish Balay   PetscFunctionReturn(0);
537e5c89e4eSSatish Balay }
538e5c89e4eSSatish Balay 
539e5c89e4eSSatish Balay #undef __FUNCT__
540574034a9SJed Brown #define __FUNCT__ "PetscMallocSetDumpLogThreshold"
541574034a9SJed Brown /*@C
542574034a9SJed Brown     PetscMallocSetDumpLogThreshold - Activates logging of all calls to PetscMalloc().
543574034a9SJed Brown 
544574034a9SJed Brown     Not Collective
545574034a9SJed Brown 
546574034a9SJed Brown     Input Arguments:
547574034a9SJed Brown .   logmin - minimum allocation size to log, or PETSC_DEFAULT
548574034a9SJed Brown 
549574034a9SJed Brown     Options Database Key:
550574034a9SJed Brown +  -malloc_log <filename> - Activates PetscMallocDumpLog()
551574034a9SJed Brown -  -malloc_log_threshold <min> - Activates logging and sets a minimum size
552574034a9SJed Brown 
553574034a9SJed Brown     Level: advanced
554574034a9SJed Brown 
555574034a9SJed Brown .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocSetDumpLog()
556574034a9SJed Brown @*/
557574034a9SJed Brown PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble logmin)
558574034a9SJed Brown {
559574034a9SJed Brown   PetscErrorCode ierr;
560574034a9SJed Brown 
561574034a9SJed Brown   PetscFunctionBegin;
562574034a9SJed Brown   ierr = PetscMallocSetDumpLog();CHKERRQ(ierr);
563574034a9SJed Brown   if (logmin < 0) logmin = 0.0; /* PETSC_DEFAULT or PETSC_DECIDE */
564574034a9SJed Brown   PetscLogMallocThreshold = (size_t)logmin;
565574034a9SJed Brown   PetscFunctionReturn(0);
566574034a9SJed Brown }
567574034a9SJed Brown 
568574034a9SJed Brown #undef __FUNCT__
56918a2528dSJed Brown #define __FUNCT__ "PetscMallocGetDumpLog"
57018a2528dSJed Brown /*@C
57118a2528dSJed Brown     PetscMallocGetDumpLog - Determine whether all calls to PetscMalloc() are being logged
57218a2528dSJed Brown 
57318a2528dSJed Brown     Not Collective
57418a2528dSJed Brown 
57518a2528dSJed Brown     Output Arguments
57618a2528dSJed Brown .   logging - PETSC_TRUE if logging is active
57718a2528dSJed Brown 
57818a2528dSJed Brown     Options Database Key:
57918a2528dSJed Brown .  -malloc_log - Activates PetscMallocDumpLog()
58018a2528dSJed Brown 
58118a2528dSJed Brown     Level: advanced
58218a2528dSJed Brown 
58318a2528dSJed Brown .seealso: PetscMallocDump(), PetscMallocDumpLog()
58418a2528dSJed Brown @*/
58518a2528dSJed Brown PetscErrorCode PetscMallocGetDumpLog(PetscBool *logging)
58618a2528dSJed Brown {
58718a2528dSJed Brown 
58818a2528dSJed Brown   PetscFunctionBegin;
58918a2528dSJed Brown   *logging = (PetscBool)(PetscLogMalloc >= 0);
59018a2528dSJed Brown   PetscFunctionReturn(0);
59118a2528dSJed Brown }
59218a2528dSJed Brown 
59318a2528dSJed Brown #undef __FUNCT__
594e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDumpLog"
595e5c89e4eSSatish Balay /*@C
596e5c89e4eSSatish Balay     PetscMallocDumpLog - Dumps the log of all calls to PetscMalloc(); also calls
59721b680ceSJed Brown        PetscMemoryGetMaximumUsage()
598e5c89e4eSSatish Balay 
599e5c89e4eSSatish Balay     Collective on PETSC_COMM_WORLD
600e5c89e4eSSatish Balay 
601e5c89e4eSSatish Balay     Input Parameter:
6020298fd71SBarry Smith .   fp - file pointer; or NULL
603e5c89e4eSSatish Balay 
604e5c89e4eSSatish Balay     Options Database Key:
605e5c89e4eSSatish Balay .  -malloc_log - Activates PetscMallocDumpLog()
606e5c89e4eSSatish Balay 
607e5c89e4eSSatish Balay     Level: advanced
608e5c89e4eSSatish Balay 
609e5c89e4eSSatish Balay    Fortran Note:
610e5c89e4eSSatish Balay    The calling sequence in Fortran is PetscMallocDumpLog(integer ierr)
611e5c89e4eSSatish Balay    The fp defaults to stdout.
612e5c89e4eSSatish Balay 
613e5c89e4eSSatish Balay .seealso: PetscMallocGetCurrentUsage(), PetscMallocDump(), PetscMallocSetDumpLog()
614e5c89e4eSSatish Balay @*/
6157087cfbeSBarry Smith PetscErrorCode  PetscMallocDumpLog(FILE *fp)
616e5c89e4eSSatish Balay {
617e5c89e4eSSatish Balay   PetscInt       i,j,n,dummy,*perm;
618e5c89e4eSSatish Balay   size_t         *shortlength;
619f56c2debSBarry Smith   int            *shortcount,err;
620e5c89e4eSSatish Balay   PetscMPIInt    rank,size,tag = 1212 /* very bad programming */;
621ace3abfcSBarry Smith   PetscBool      match;
622e5c89e4eSSatish Balay   const char     **shortfunction;
623e5c89e4eSSatish Balay   PetscLogDouble rss;
624e5c89e4eSSatish Balay   MPI_Status     status;
625e5c89e4eSSatish Balay   PetscErrorCode ierr;
626e5c89e4eSSatish Balay 
627e5c89e4eSSatish Balay   PetscFunctionBegin;
628e5c89e4eSSatish Balay   ierr = MPI_Comm_rank(MPI_COMM_WORLD,&rank);CHKERRQ(ierr);
629e5c89e4eSSatish Balay   ierr = MPI_Comm_size(MPI_COMM_WORLD,&size);CHKERRQ(ierr);
630e5c89e4eSSatish Balay   /*
631e5c89e4eSSatish Balay        Try to get the data printed in order by processor. This will only sometimes work
632e5c89e4eSSatish Balay   */
633f56c2debSBarry Smith   err = fflush(fp);
634e32f2f54SBarry Smith   if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fflush() failed on file");
635f56c2debSBarry Smith 
636e5c89e4eSSatish Balay   ierr = MPI_Barrier(MPI_COMM_WORLD);CHKERRQ(ierr);
637e5c89e4eSSatish Balay   if (rank) {
638e5c89e4eSSatish Balay     ierr = MPI_Recv(&dummy,1,MPIU_INT,rank-1,tag,MPI_COMM_WORLD,&status);CHKERRQ(ierr);
639e5c89e4eSSatish Balay   }
640e5c89e4eSSatish Balay 
641768aa557SSatish Balay   if (PetscLogMalloc < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"PetscMallocDumpLog() called without call to PetscMallocSetDumpLog() this is often due to\n                      setting the option -malloc_log AFTER PetscInitialize() with PetscOptionsInsert() or PetscOptionsInsertFile()");
642768aa557SSatish Balay 
643da9f1d6bSBarry Smith   if (!fp) fp = PETSC_STDOUT;
644f3d65365SJed Brown   ierr = PetscMemoryGetMaximumUsage(&rss);CHKERRQ(ierr);
645e5c89e4eSSatish Balay   if (rss) {
646f3d65365SJed Brown     ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Maximum memory PetscMalloc()ed %.0f maximum size of entire process %.0f\n",rank,(PetscLogDouble)TRMaxMem,rss);CHKERRQ(ierr);
647e5c89e4eSSatish Balay   } else {
648e5c89e4eSSatish Balay     ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Maximum memory PetscMalloc()ed %.0f OS cannot compute size of entire process\n",rank,(PetscLogDouble)TRMaxMem);CHKERRQ(ierr);
649e5c89e4eSSatish Balay   }
650e32f2f54SBarry Smith   shortcount    = (int*)malloc(PetscLogMalloc*sizeof(int));if (!shortcount) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"Out of memory");
651e32f2f54SBarry Smith   shortlength   = (size_t*)malloc(PetscLogMalloc*sizeof(size_t));if (!shortlength) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"Out of memory");
652e32f2f54SBarry Smith   shortfunction = (const char**)malloc(PetscLogMalloc*sizeof(char*));if (!shortfunction) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"Out of memory");
65397b9d747SJed Brown   for (i=0,n=0; i<PetscLogMalloc; i++) {
654e5c89e4eSSatish Balay     for (j=0; j<n; j++) {
655e5c89e4eSSatish Balay       ierr = PetscStrcmp(shortfunction[j],PetscLogMallocFunction[i],&match);CHKERRQ(ierr);
656e5c89e4eSSatish Balay       if (match) {
657e5c89e4eSSatish Balay         shortlength[j] += PetscLogMallocLength[i];
65859ffdab8SBarry Smith         shortcount[j]++;
659e5c89e4eSSatish Balay         goto foundit;
660e5c89e4eSSatish Balay       }
661e5c89e4eSSatish Balay     }
662e5c89e4eSSatish Balay     shortfunction[n] = PetscLogMallocFunction[i];
663e5c89e4eSSatish Balay     shortlength[n]   = PetscLogMallocLength[i];
66459ffdab8SBarry Smith     shortcount[n]    = 1;
665e5c89e4eSSatish Balay     n++;
666e5c89e4eSSatish Balay foundit:;
667e5c89e4eSSatish Balay   }
668e5c89e4eSSatish Balay 
669e32f2f54SBarry Smith   perm = (PetscInt*)malloc(n*sizeof(PetscInt));if (!perm) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"Out of memory");
670e5c89e4eSSatish Balay   for (i=0; i<n; i++) perm[i] = i;
671e5c89e4eSSatish Balay   ierr = PetscSortStrWithPermutation(n,(const char**)shortfunction,perm);CHKERRQ(ierr);
672e5c89e4eSSatish Balay 
673e5c89e4eSSatish Balay   ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Memory usage sorted by function\n",rank);CHKERRQ(ierr);
674e5c89e4eSSatish Balay   for (i=0; i<n; i++) {
67559ffdab8SBarry Smith     ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] %d %.0f %s()\n",rank,shortcount[perm[i]],(PetscLogDouble)shortlength[perm[i]],shortfunction[perm[i]]);CHKERRQ(ierr);
676e5c89e4eSSatish Balay   }
677e5c89e4eSSatish Balay   free(perm);
678e5c89e4eSSatish Balay   free(shortlength);
67959ffdab8SBarry Smith   free(shortcount);
680e5c89e4eSSatish Balay   free((char**)shortfunction);
681f56c2debSBarry Smith   err = fflush(fp);
682e32f2f54SBarry Smith   if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fflush() failed on file");
683e5c89e4eSSatish Balay   if (rank != size-1) {
684e5c89e4eSSatish Balay     ierr = MPI_Send(&dummy,1,MPIU_INT,rank+1,tag,MPI_COMM_WORLD);CHKERRQ(ierr);
685e5c89e4eSSatish Balay   }
686e5c89e4eSSatish Balay   PetscFunctionReturn(0);
687e5c89e4eSSatish Balay }
688e5c89e4eSSatish Balay 
689e5c89e4eSSatish Balay /* ---------------------------------------------------------------------------- */
690e5c89e4eSSatish Balay 
691e5c89e4eSSatish Balay #undef __FUNCT__
692e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDebug"
693e5c89e4eSSatish Balay /*@C
694e5c89e4eSSatish Balay     PetscMallocDebug - Turns on/off debugging for the memory management routines.
695e5c89e4eSSatish Balay 
696e5c89e4eSSatish Balay     Not Collective
697e5c89e4eSSatish Balay 
698e5c89e4eSSatish Balay     Input Parameter:
699e5c89e4eSSatish Balay .   level - PETSC_TRUE or PETSC_FALSE
700e5c89e4eSSatish Balay 
701e5c89e4eSSatish Balay    Level: intermediate
702e5c89e4eSSatish Balay 
703e5c89e4eSSatish Balay .seealso: CHKMEMQ(), PetscMallocValidate()
704e5c89e4eSSatish Balay @*/
7057087cfbeSBarry Smith PetscErrorCode  PetscMallocDebug(PetscBool level)
706e5c89e4eSSatish Balay {
707e5c89e4eSSatish Balay   PetscFunctionBegin;
708e5c89e4eSSatish Balay   TRdebugLevel = level;
709e5c89e4eSSatish Balay   PetscFunctionReturn(0);
710e5c89e4eSSatish Balay }
7110acecf5bSBarry Smith 
7120acecf5bSBarry Smith #undef __FUNCT__
7130acecf5bSBarry Smith #define __FUNCT__ "PetscMallocGetDebug"
7140acecf5bSBarry Smith /*@C
7150acecf5bSBarry Smith     PetscMallocGetDebug - Indicates if any PETSc is doing ANY memory debugging.
7160acecf5bSBarry Smith 
7170acecf5bSBarry Smith     Not Collective
7180acecf5bSBarry Smith 
7190acecf5bSBarry Smith     Output Parameter:
7200acecf5bSBarry Smith .    flg - PETSC_TRUE if any debugger
7210acecf5bSBarry Smith 
7220acecf5bSBarry Smith    Level: intermediate
7230acecf5bSBarry Smith 
7240acecf5bSBarry Smith     Note that by default, the debug version always does some debugging unless you run with -malloc no
7250acecf5bSBarry Smith 
7260acecf5bSBarry Smith 
7270acecf5bSBarry Smith .seealso: CHKMEMQ(), PetscMallocValidate()
7280acecf5bSBarry Smith @*/
7290acecf5bSBarry Smith PetscErrorCode  PetscMallocGetDebug(PetscBool *flg)
7300acecf5bSBarry Smith {
7310acecf5bSBarry Smith   PetscFunctionBegin;
7320acecf5bSBarry Smith   if (PetscTrMalloc == PetscTrMallocDefault) *flg = PETSC_TRUE;
7330acecf5bSBarry Smith   else *flg = PETSC_FALSE;
7340acecf5bSBarry Smith   PetscFunctionReturn(0);
7350acecf5bSBarry Smith }
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