18e89d99cSJDBetteridge static char help[] = "Tests `GarbageKeyAllReduceIntersect_Private()` in parallel\n\n"; 28e89d99cSJDBetteridge 38e89d99cSJDBetteridge #include <petscsys.h> 48e89d99cSJDBetteridge #include <petsc/private/garbagecollector.h> 58e89d99cSJDBetteridge 68e89d99cSJDBetteridge /* This program tests `GarbageKeyAllReduceIntersect_Private()`. 78e89d99cSJDBetteridge To test this routine in parallel, the sieve of Eratosthenes is 88e89d99cSJDBetteridge implemented. 98e89d99cSJDBetteridge */ 108e89d99cSJDBetteridge 118e89d99cSJDBetteridge /* Populate an array with Prime numbers <= n. 128e89d99cSJDBetteridge Primes are generated using trial division 138e89d99cSJDBetteridge */ 146497c311SBarry Smith PetscErrorCode Prime(PetscInt64 **set, PetscInt64 n) 158e89d99cSJDBetteridge { 168e89d99cSJDBetteridge size_t overestimate; 178e89d99cSJDBetteridge PetscBool is_prime; 188e89d99cSJDBetteridge PetscInt64 ii, jj, count = 0; 198e89d99cSJDBetteridge PetscInt64 *prime; 208e89d99cSJDBetteridge 218e89d99cSJDBetteridge PetscFunctionBeginUser; 228e89d99cSJDBetteridge /* There will be fewer than ceil(1.26 * n/log(n)) primes <= n */ 238e89d99cSJDBetteridge overestimate = (size_t)PetscCeilReal(((PetscReal)n) * 1.26 / PetscLogReal((PetscReal)n)); 248e89d99cSJDBetteridge PetscCall(PetscMalloc1(overestimate, &prime)); 258e89d99cSJDBetteridge for (ii = 2; ii < n + 1; ii++) { 268e89d99cSJDBetteridge is_prime = PETSC_TRUE; 278e89d99cSJDBetteridge for (jj = 2; jj <= PetscFloorReal(PetscSqrtReal(ii)); jj++) { 288e89d99cSJDBetteridge if (ii % jj == 0) { 298e89d99cSJDBetteridge is_prime = PETSC_FALSE; 308e89d99cSJDBetteridge break; 318e89d99cSJDBetteridge } 328e89d99cSJDBetteridge } 338e89d99cSJDBetteridge if (is_prime) { 348e89d99cSJDBetteridge prime[count] = ii; 358e89d99cSJDBetteridge count++; 368e89d99cSJDBetteridge } 378e89d99cSJDBetteridge } 388e89d99cSJDBetteridge 398e89d99cSJDBetteridge PetscCall(PetscMalloc1((size_t)count + 1, set)); 408e89d99cSJDBetteridge (*set)[0] = count; 418e89d99cSJDBetteridge for (ii = 1; ii < count + 1; ii++) { (*set)[ii] = prime[ii - 1]; } 428e89d99cSJDBetteridge PetscCall(PetscFree(prime)); 433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 448e89d99cSJDBetteridge } 458e89d99cSJDBetteridge 468e89d99cSJDBetteridge /* Print out the contents of a set */ 478e89d99cSJDBetteridge PetscErrorCode PrintSet(MPI_Comm comm, PetscInt64 *set) 488e89d99cSJDBetteridge { 498e89d99cSJDBetteridge char text[64]; 508e89d99cSJDBetteridge PetscInt ii; 518e89d99cSJDBetteridge 528e89d99cSJDBetteridge PetscFunctionBeginUser; 538e89d99cSJDBetteridge PetscCall(PetscSynchronizedPrintf(comm, "[")); 548e89d99cSJDBetteridge for (ii = 1; ii <= (PetscInt)set[0]; ii++) { 558e89d99cSJDBetteridge PetscCall(PetscFormatConvert(" %" PetscInt64_FMT ",", text)); 568e89d99cSJDBetteridge PetscCall(PetscSynchronizedPrintf(comm, text, set[ii])); 578e89d99cSJDBetteridge } 588e89d99cSJDBetteridge PetscCall(PetscSynchronizedPrintf(comm, "]\n")); 598e89d99cSJDBetteridge PetscCall(PetscSynchronizedFlush(comm, PETSC_STDOUT)); 603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 618e89d99cSJDBetteridge } 628e89d99cSJDBetteridge 638e89d99cSJDBetteridge /* Check set equality */ 648e89d99cSJDBetteridge PetscErrorCode AssertSetsEqual(PetscInt64 *set, PetscInt64 *true_set) 658e89d99cSJDBetteridge { 668e89d99cSJDBetteridge PetscInt ii; 678e89d99cSJDBetteridge 688e89d99cSJDBetteridge PetscFunctionBeginUser; 69*57508eceSPierre Jolivet PetscAssert(set[0] == true_set[0], PETSC_COMM_WORLD, PETSC_ERR_ARG_INCOMP, "Sets of different sizes"); 70*57508eceSPierre Jolivet for (ii = 1; ii < set[0] + 1; ii++) PetscAssert(set[ii] == true_set[ii], PETSC_COMM_WORLD, PETSC_ERR_ARG_INCOMP, "Sets are different"); 713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 728e89d99cSJDBetteridge } 738e89d99cSJDBetteridge 748e89d99cSJDBetteridge /* Parallel implementation of the sieve of Eratosthenes */ 758e89d99cSJDBetteridge PetscErrorCode test_sieve(MPI_Comm comm) 768e89d99cSJDBetteridge { 778e89d99cSJDBetteridge PetscInt64 ii, local_p, maximum, n; 788e89d99cSJDBetteridge PetscInt64 *local_set, *cursor, *bootstrap_primes, *truth; 798e89d99cSJDBetteridge PetscMPIInt size, rank; 808e89d99cSJDBetteridge PetscReal x; 818e89d99cSJDBetteridge 828e89d99cSJDBetteridge PetscFunctionBeginUser; 838e89d99cSJDBetteridge PetscCallMPI(MPI_Comm_rank(comm, &rank)); 848e89d99cSJDBetteridge PetscCallMPI(MPI_Comm_size(comm, &size)); 858e89d99cSJDBetteridge 868e89d99cSJDBetteridge /* There should be at least `size + 1` primes smaller than 878e89d99cSJDBetteridge (size + 1)*(log(size + 1) + log(log(size + 1)) 888e89d99cSJDBetteridge once `size` >=6 898e89d99cSJDBetteridge This is sufficient for each rank to create its own sieve based off 908e89d99cSJDBetteridge a different prime and calculate the size of the sieve. 918e89d99cSJDBetteridge */ 928e89d99cSJDBetteridge x = (PetscReal)(size > 6) ? size + 1 : 7; 938e89d99cSJDBetteridge x = x * (PetscLogReal(x) + PetscLogReal(PetscLogReal(x))); 948e89d99cSJDBetteridge PetscCall(Prime(&bootstrap_primes, PetscCeilReal(x))); 958e89d99cSJDBetteridge 968e89d99cSJDBetteridge /* Calculate the maximum possible prime, select a prime number for 978e89d99cSJDBetteridge each rank and allocate memorty for the sieve 988e89d99cSJDBetteridge */ 998e89d99cSJDBetteridge maximum = bootstrap_primes[size + 1] * bootstrap_primes[size + 1] - 1; 1008e89d99cSJDBetteridge local_p = bootstrap_primes[rank + 1]; 1018e89d99cSJDBetteridge n = maximum - local_p - (maximum / local_p) + 1 + rank + 1; 1028e89d99cSJDBetteridge PetscCall(PetscMalloc1(n + 1, &local_set)); 1038e89d99cSJDBetteridge 1048e89d99cSJDBetteridge /* Populate the sieve first with all primes <= `local_p`, followed by 1058e89d99cSJDBetteridge all integers that are not a multiple of `local_p` 1068e89d99cSJDBetteridge */ 1078e89d99cSJDBetteridge local_set[0] = n; 1088e89d99cSJDBetteridge cursor = &local_set[1]; 1098e89d99cSJDBetteridge for (ii = 0; ii < rank + 1; ii++) { 1108e89d99cSJDBetteridge *cursor = bootstrap_primes[ii + 1]; 1118e89d99cSJDBetteridge cursor++; 1128e89d99cSJDBetteridge } 1138e89d99cSJDBetteridge for (ii = local_p + 1; ii <= maximum; ii++) { 1148e89d99cSJDBetteridge if (ii % local_p != 0) { 1158e89d99cSJDBetteridge *cursor = ii; 1168e89d99cSJDBetteridge cursor++; 1178e89d99cSJDBetteridge } 1188e89d99cSJDBetteridge } 1198e89d99cSJDBetteridge PetscCall(PetscPrintf(comm, "SIEVES:\n")); 1208e89d99cSJDBetteridge PetscCall(PrintSet(comm, local_set)); 1218e89d99cSJDBetteridge 1228e89d99cSJDBetteridge PetscCall(PetscFree(bootstrap_primes)); 1238e89d99cSJDBetteridge 1248e89d99cSJDBetteridge /* Perform the intersection, testing parallel intersection routine */ 1258e89d99cSJDBetteridge PetscCall(GarbageKeyAllReduceIntersect_Private(PETSC_COMM_WORLD, &local_set[1], (PetscInt *)&local_set[0])); 1268e89d99cSJDBetteridge 1278e89d99cSJDBetteridge PetscCall(PetscPrintf(comm, "INTERSECTION:\n")); 1288e89d99cSJDBetteridge PetscCall(PrintSet(comm, local_set)); 1298e89d99cSJDBetteridge 1308e89d99cSJDBetteridge PetscCall(Prime(&truth, maximum)); 1318e89d99cSJDBetteridge PetscCall(PetscPrintf(comm, "TRUTH:\n")); 1328e89d99cSJDBetteridge PetscCall(PrintSet(comm, truth)); 1338e89d99cSJDBetteridge 1348e89d99cSJDBetteridge /* Assert the intersection corresponds to primes calculated using 1358e89d99cSJDBetteridge trial division 1368e89d99cSJDBetteridge */ 1378e89d99cSJDBetteridge PetscCall(AssertSetsEqual(local_set, truth)); 1388e89d99cSJDBetteridge 1398e89d99cSJDBetteridge PetscCall(PetscFree(local_set)); 1408e89d99cSJDBetteridge PetscCall(PetscFree(truth)); 1413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1428e89d99cSJDBetteridge } 1438e89d99cSJDBetteridge 1448e89d99cSJDBetteridge /* Main executes the individual tests in a predefined order */ 1458e89d99cSJDBetteridge int main(int argc, char **argv) 1468e89d99cSJDBetteridge { 1478e89d99cSJDBetteridge PetscFunctionBeginUser; 148c8025a54SPierre Jolivet PetscCall(PetscInitialize(&argc, &argv, NULL, help)); 1498e89d99cSJDBetteridge 1508e89d99cSJDBetteridge PetscCall(test_sieve(PETSC_COMM_WORLD)); 1518e89d99cSJDBetteridge 1528e89d99cSJDBetteridge PetscCall(PetscPrintf(PETSC_COMM_WORLD, "ALL PASSED\n")); 1538e89d99cSJDBetteridge PetscCall(PetscFinalize()); 1548e89d99cSJDBetteridge return 0; 1558e89d99cSJDBetteridge } 1568e89d99cSJDBetteridge 1578e89d99cSJDBetteridge /*TEST 1588e89d99cSJDBetteridge 1598e89d99cSJDBetteridge testset: 1608e89d99cSJDBetteridge test: 1618e89d99cSJDBetteridge nsize: 2 1628e89d99cSJDBetteridge suffix: 2 1638e89d99cSJDBetteridge output_file: output/ex63_2.out 1648e89d99cSJDBetteridge test: 1658e89d99cSJDBetteridge nsize: 3 1668e89d99cSJDBetteridge suffix: 3 1678e89d99cSJDBetteridge output_file: output/ex63_3.out 1688e89d99cSJDBetteridge test: 1698e89d99cSJDBetteridge nsize: 4 1708e89d99cSJDBetteridge suffix: 4 1718e89d99cSJDBetteridge output_file: output/ex63_4.out 1728e89d99cSJDBetteridge 1738e89d99cSJDBetteridge TEST*/ 174