1e5c89e4eSSatish Balay 2c6db04a5SJed Brown #include <petscsys.h> /*I "petscsys.h" I*/ 3e5c89e4eSSatish Balay 4e5c89e4eSSatish Balay 5e5c89e4eSSatish Balay /*@C 6e5c89e4eSSatish Balay PetscGatherNumberOfMessages - Computes the number of messages a node expects to receive 7e5c89e4eSSatish Balay 8*d083f849SBarry Smith Collective 9e5c89e4eSSatish Balay 10e5c89e4eSSatish Balay Input Parameters: 11e5c89e4eSSatish Balay + comm - Communicator 12e5c89e4eSSatish Balay . iflags - an array of integers of length sizeof(comm). A '1' in ilengths[i] represent a 130298fd71SBarry Smith message from current node to ith node. Optionally NULL 14e5c89e4eSSatish Balay - ilengths - Non zero ilengths[i] represent a message to i of length ilengths[i]. 150298fd71SBarry Smith Optionally NULL. 16e5c89e4eSSatish Balay 17e5c89e4eSSatish Balay Output Parameters: 18e5c89e4eSSatish Balay . nrecvs - number of messages received 19e5c89e4eSSatish Balay 20e5c89e4eSSatish Balay Level: developer 21e5c89e4eSSatish Balay 22e5c89e4eSSatish Balay Notes: 23e5c89e4eSSatish Balay With this info, the correct message lengths can be determined using 24e5c89e4eSSatish Balay PetscGatherMessageLengths() 25e5c89e4eSSatish Balay 26e5c89e4eSSatish Balay Either iflags or ilengths should be provided. If iflags is not 270298fd71SBarry Smith provided (NULL) it can be computed from ilengths. If iflags is 28e5c89e4eSSatish Balay provided, ilengths is not required. 29e5c89e4eSSatish Balay 30e5c89e4eSSatish Balay .seealso: PetscGatherMessageLengths() 31e5c89e4eSSatish Balay @*/ 327087cfbeSBarry Smith PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm comm,const PetscMPIInt iflags[],const PetscMPIInt ilengths[],PetscMPIInt *nrecvs) 33e5c89e4eSSatish Balay { 340298fd71SBarry Smith PetscMPIInt size,rank,*recv_buf,i,*iflags_local = NULL,*iflags_localm = NULL; 35e5c89e4eSSatish Balay PetscErrorCode ierr; 36e5c89e4eSSatish Balay 37e5c89e4eSSatish Balay PetscFunctionBegin; 38e5c89e4eSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 39e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 40e5c89e4eSSatish Balay 41dcca6d9dSJed Brown ierr = PetscMalloc2(size,&recv_buf,size,&iflags_localm);CHKERRQ(ierr); 42e5c89e4eSSatish Balay 43e5c89e4eSSatish Balay /* If iflags not provided, compute iflags from ilengths */ 44e5c89e4eSSatish Balay if (!iflags) { 45e32f2f54SBarry Smith if (!ilengths) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Either iflags or ilengths should be provided"); 46e5c89e4eSSatish Balay iflags_local = iflags_localm; 47e5c89e4eSSatish Balay for (i=0; i<size; i++) { 48e5c89e4eSSatish Balay if (ilengths[i]) iflags_local[i] = 1; 49e5c89e4eSSatish Balay else iflags_local[i] = 0; 50e5c89e4eSSatish Balay } 51a297a907SKarl Rupp } else iflags_local = (PetscMPIInt*) iflags; 52e5c89e4eSSatish Balay 53e5c89e4eSSatish Balay /* Post an allreduce to determine the numer of messages the current node will receive */ 54b2566f29SBarry Smith ierr = MPIU_Allreduce(iflags_local,recv_buf,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 55e5c89e4eSSatish Balay *nrecvs = recv_buf[rank]; 56e5c89e4eSSatish Balay 57e5c89e4eSSatish Balay ierr = PetscFree2(recv_buf,iflags_localm);CHKERRQ(ierr); 58e5c89e4eSSatish Balay PetscFunctionReturn(0); 59e5c89e4eSSatish Balay } 60e5c89e4eSSatish Balay 61e5c89e4eSSatish Balay 62e5c89e4eSSatish Balay /*@C 63e5c89e4eSSatish Balay PetscGatherMessageLengths - Computes info about messages that a MPI-node will receive, 64e5c89e4eSSatish Balay including (from-id,length) pairs for each message. 65e5c89e4eSSatish Balay 66*d083f849SBarry Smith Collective 67e5c89e4eSSatish Balay 68e5c89e4eSSatish Balay Input Parameters: 69e5c89e4eSSatish Balay + comm - Communicator 70e5c89e4eSSatish Balay . nsends - number of messages that are to be sent. 71e5c89e4eSSatish Balay . nrecvs - number of messages being received 72e5c89e4eSSatish Balay - ilengths - an array of integers of length sizeof(comm) 73e5c89e4eSSatish Balay a non zero ilengths[i] represent a message to i of length ilengths[i] 74e5c89e4eSSatish Balay 75e5c89e4eSSatish Balay 76e5c89e4eSSatish Balay Output Parameters: 77e5c89e4eSSatish Balay + onodes - list of node-ids from which messages are expected 78e5c89e4eSSatish Balay - olengths - corresponding message lengths 79e5c89e4eSSatish Balay 80e5c89e4eSSatish Balay Level: developer 81e5c89e4eSSatish Balay 82e5c89e4eSSatish Balay Notes: 83e5c89e4eSSatish Balay With this info, the correct MPI_Irecv() can be posted with the correct 84e5c89e4eSSatish Balay from-id, with a buffer with the right amount of memory required. 85e5c89e4eSSatish Balay 86e5c89e4eSSatish Balay The calling function deallocates the memory in onodes and olengths 87e5c89e4eSSatish Balay 88e5c89e4eSSatish Balay To determine nrecevs, one can use PetscGatherNumberOfMessages() 89e5c89e4eSSatish Balay 90e5c89e4eSSatish Balay .seealso: PetscGatherNumberOfMessages() 91e5c89e4eSSatish Balay @*/ 927087cfbeSBarry Smith PetscErrorCode PetscGatherMessageLengths(MPI_Comm comm,PetscMPIInt nsends,PetscMPIInt nrecvs,const PetscMPIInt ilengths[],PetscMPIInt **onodes,PetscMPIInt **olengths) 93e5c89e4eSSatish Balay { 94e5c89e4eSSatish Balay PetscErrorCode ierr; 95e5c89e4eSSatish Balay PetscMPIInt size,tag,i,j; 960298fd71SBarry Smith MPI_Request *s_waits = NULL,*r_waits = NULL; 970298fd71SBarry Smith MPI_Status *w_status = NULL; 98e5c89e4eSSatish Balay 99e5c89e4eSSatish Balay PetscFunctionBegin; 100e5c89e4eSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 101e5c89e4eSSatish Balay ierr = PetscCommGetNewTag(comm,&tag);CHKERRQ(ierr); 102e5c89e4eSSatish Balay 103e5c89e4eSSatish Balay /* cannot use PetscMalloc3() here because in the call to MPI_Waitall() they MUST be contiguous */ 104dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs+nsends,&r_waits,nrecvs+nsends,&w_status);CHKERRQ(ierr); 105e5c89e4eSSatish Balay s_waits = r_waits+nrecvs; 106e5c89e4eSSatish Balay 107e5c89e4eSSatish Balay /* Post the Irecv to get the message length-info */ 108785e854fSJed Brown ierr = PetscMalloc1(nrecvs,olengths);CHKERRQ(ierr); 109e5c89e4eSSatish Balay for (i=0; i<nrecvs; i++) { 110e5c89e4eSSatish Balay ierr = MPI_Irecv((*olengths)+i,1,MPI_INT,MPI_ANY_SOURCE,tag,comm,r_waits+i);CHKERRQ(ierr); 111e5c89e4eSSatish Balay } 112e5c89e4eSSatish Balay 113e5c89e4eSSatish Balay /* Post the Isends with the message length-info */ 114e5c89e4eSSatish Balay for (i=0,j=0; i<size; ++i) { 115e5c89e4eSSatish Balay if (ilengths[i]) { 116300a7f5bSBarry Smith ierr = MPI_Isend((void*)(ilengths+i),1,MPI_INT,i,tag,comm,s_waits+j);CHKERRQ(ierr); 117e5c89e4eSSatish Balay j++; 118e5c89e4eSSatish Balay } 119e5c89e4eSSatish Balay } 120e5c89e4eSSatish Balay 121e5c89e4eSSatish Balay /* Post waits on sends and receivs */ 122e5c89e4eSSatish Balay if (nrecvs+nsends) {ierr = MPI_Waitall(nrecvs+nsends,r_waits,w_status);CHKERRQ(ierr);} 123e5c89e4eSSatish Balay 124e5c89e4eSSatish Balay /* Pack up the received data */ 125785e854fSJed Brown ierr = PetscMalloc1(nrecvs,onodes);CHKERRQ(ierr); 126a297a907SKarl Rupp for (i=0; i<nrecvs; ++i) (*onodes)[i] = w_status[i].MPI_SOURCE; 127e5c89e4eSSatish Balay ierr = PetscFree2(r_waits,w_status);CHKERRQ(ierr); 128e5c89e4eSSatish Balay PetscFunctionReturn(0); 129e5c89e4eSSatish Balay } 130dd6ea824SBarry Smith 131e5c89e4eSSatish Balay /*@C 132e5c89e4eSSatish Balay PetscGatherMessageLengths2 - Computes info about messages that a MPI-node will receive, 133e5c89e4eSSatish Balay including (from-id,length) pairs for each message. Same functionality as PetscGatherMessageLengths() 134e5c89e4eSSatish Balay except it takes TWO ilenths and output TWO olengths. 135e5c89e4eSSatish Balay 136*d083f849SBarry Smith Collective 137e5c89e4eSSatish Balay 138e5c89e4eSSatish Balay Input Parameters: 139e5c89e4eSSatish Balay + comm - Communicator 140e5c89e4eSSatish Balay . nsends - number of messages that are to be sent. 141e5c89e4eSSatish Balay . nrecvs - number of messages being received 142e5c89e4eSSatish Balay - ilengths1, ilengths2 - array of integers of length sizeof(comm) 143e5c89e4eSSatish Balay a non zero ilengths[i] represent a message to i of length ilengths[i] 144e5c89e4eSSatish Balay 145e5c89e4eSSatish Balay Output Parameters: 146e5c89e4eSSatish Balay + onodes - list of node-ids from which messages are expected 147e5c89e4eSSatish Balay - olengths1, olengths2 - corresponding message lengths 148e5c89e4eSSatish Balay 149e5c89e4eSSatish Balay Level: developer 150e5c89e4eSSatish Balay 151e5c89e4eSSatish Balay Notes: 152e5c89e4eSSatish Balay With this info, the correct MPI_Irecv() can be posted with the correct 153e5c89e4eSSatish Balay from-id, with a buffer with the right amount of memory required. 154e5c89e4eSSatish Balay 155e5c89e4eSSatish Balay The calling function deallocates the memory in onodes and olengths 156e5c89e4eSSatish Balay 157e5c89e4eSSatish Balay To determine nrecevs, one can use PetscGatherNumberOfMessages() 158e5c89e4eSSatish Balay 159e5c89e4eSSatish Balay .seealso: PetscGatherMessageLengths() and PetscGatherNumberOfMessages() 160e5c89e4eSSatish Balay @*/ 1617087cfbeSBarry Smith PetscErrorCode PetscGatherMessageLengths2(MPI_Comm comm,PetscMPIInt nsends,PetscMPIInt nrecvs,const PetscMPIInt ilengths1[],const PetscMPIInt ilengths2[],PetscMPIInt **onodes,PetscMPIInt **olengths1,PetscMPIInt **olengths2) 162e5c89e4eSSatish Balay { 163e5c89e4eSSatish Balay PetscErrorCode ierr; 1640298fd71SBarry Smith PetscMPIInt size,tag,i,j,*buf_s = NULL,*buf_r = NULL,*buf_j = NULL; 1650298fd71SBarry Smith MPI_Request *s_waits = NULL,*r_waits = NULL; 1660298fd71SBarry Smith MPI_Status *w_status = NULL; 167e5c89e4eSSatish Balay 168e5c89e4eSSatish Balay PetscFunctionBegin; 169e5c89e4eSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 170e5c89e4eSSatish Balay ierr = PetscCommGetNewTag(comm,&tag);CHKERRQ(ierr); 171e5c89e4eSSatish Balay 1723bf92927SBarry Smith /* cannot use PetscMalloc5() because r_waits and s_waits must be contiguous for the call to MPI_Waitall() */ 173dcca6d9dSJed Brown ierr = PetscMalloc4(nrecvs+nsends,&r_waits,2*nrecvs,&buf_r,2*nsends,&buf_s,nrecvs+nsends,&w_status);CHKERRQ(ierr); 174e5c89e4eSSatish Balay s_waits = r_waits + nrecvs; 175e5c89e4eSSatish Balay 176e5c89e4eSSatish Balay /* Post the Irecv to get the message length-info */ 177854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,olengths1);CHKERRQ(ierr); 178854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,olengths2);CHKERRQ(ierr); 179e5c89e4eSSatish Balay for (i=0; i<nrecvs; i++) { 180e5c89e4eSSatish Balay buf_j = buf_r + (2*i); 181e5c89e4eSSatish Balay ierr = MPI_Irecv(buf_j,2,MPI_INT,MPI_ANY_SOURCE,tag,comm,r_waits+i);CHKERRQ(ierr); 182e5c89e4eSSatish Balay } 183e5c89e4eSSatish Balay 184e5c89e4eSSatish Balay /* Post the Isends with the message length-info */ 185e5c89e4eSSatish Balay for (i=0,j=0; i<size; ++i) { 186e5c89e4eSSatish Balay if (ilengths1[i]) { 187e5c89e4eSSatish Balay buf_j = buf_s + (2*j); 188e5c89e4eSSatish Balay buf_j[0] = *(ilengths1+i); 189e5c89e4eSSatish Balay buf_j[1] = *(ilengths2+i); 190e5c89e4eSSatish Balay ierr = MPI_Isend(buf_j,2,MPI_INT,i,tag,comm,s_waits+j);CHKERRQ(ierr); 191e5c89e4eSSatish Balay j++; 192e5c89e4eSSatish Balay } 193e5c89e4eSSatish Balay } 194f327f304SBarry Smith if (j != nsends) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"j %d not equal to expected number of sends %d\n",j,nsends); 195e5c89e4eSSatish Balay 196e5c89e4eSSatish Balay /* Post waits on sends and receivs */ 197e5c89e4eSSatish Balay if (nrecvs+nsends) {ierr = MPI_Waitall(nrecvs+nsends,r_waits,w_status);CHKERRQ(ierr);} 198e5c89e4eSSatish Balay 199e5c89e4eSSatish Balay 200e5c89e4eSSatish Balay /* Pack up the received data */ 201854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,onodes);CHKERRQ(ierr); 202e5c89e4eSSatish Balay for (i=0; i<nrecvs; ++i) { 203e5c89e4eSSatish Balay (*onodes)[i] = w_status[i].MPI_SOURCE; 204e5c89e4eSSatish Balay buf_j = buf_r + (2*i); 205e5c89e4eSSatish Balay (*olengths1)[i] = buf_j[0]; 206e5c89e4eSSatish Balay (*olengths2)[i] = buf_j[1]; 207e5c89e4eSSatish Balay } 208e5c89e4eSSatish Balay 209e5c89e4eSSatish Balay ierr = PetscFree4(r_waits,buf_r,buf_s,w_status);CHKERRQ(ierr); 210e5c89e4eSSatish Balay PetscFunctionReturn(0); 211e5c89e4eSSatish Balay } 212e5c89e4eSSatish Balay 213e5c89e4eSSatish Balay /* 214e5c89e4eSSatish Balay 215e5c89e4eSSatish Balay Allocate a bufffer sufficient to hold messages of size specified in olengths. 216e5c89e4eSSatish Balay And post Irecvs on these buffers using node info from onodes 217e5c89e4eSSatish Balay 218e5c89e4eSSatish Balay */ 2197087cfbeSBarry Smith PetscErrorCode PetscPostIrecvInt(MPI_Comm comm,PetscMPIInt tag,PetscMPIInt nrecvs,const PetscMPIInt onodes[],const PetscMPIInt olengths[],PetscInt ***rbuf,MPI_Request **r_waits) 220e5c89e4eSSatish Balay { 221e5c89e4eSSatish Balay PetscErrorCode ierr; 222c05d87d6SBarry Smith PetscInt **rbuf_t,i,len = 0; 223e5c89e4eSSatish Balay MPI_Request *r_waits_t; 224e5c89e4eSSatish Balay 225e5c89e4eSSatish Balay PetscFunctionBegin; 226e5c89e4eSSatish Balay /* compute memory required for recv buffers */ 227e5c89e4eSSatish Balay for (i=0; i<nrecvs; i++) len += olengths[i]; /* each message length */ 228e5c89e4eSSatish Balay 229e5c89e4eSSatish Balay /* allocate memory for recv buffers */ 230854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&rbuf_t);CHKERRQ(ierr); 231785e854fSJed Brown ierr = PetscMalloc1(len,&rbuf_t[0]);CHKERRQ(ierr); 232e5c89e4eSSatish Balay for (i=1; i<nrecvs; ++i) rbuf_t[i] = rbuf_t[i-1] + olengths[i-1]; 233e5c89e4eSSatish Balay 234e5c89e4eSSatish Balay /* Post the receives */ 235785e854fSJed Brown ierr = PetscMalloc1(nrecvs,&r_waits_t);CHKERRQ(ierr); 236e5c89e4eSSatish Balay for (i=0; i<nrecvs; ++i) { 237e5c89e4eSSatish Balay ierr = MPI_Irecv(rbuf_t[i],olengths[i],MPIU_INT,onodes[i],tag,comm,r_waits_t+i);CHKERRQ(ierr); 238e5c89e4eSSatish Balay } 239e5c89e4eSSatish Balay 240e5c89e4eSSatish Balay *rbuf = rbuf_t; 241e5c89e4eSSatish Balay *r_waits = r_waits_t; 242e5c89e4eSSatish Balay PetscFunctionReturn(0); 243e5c89e4eSSatish Balay } 244e5c89e4eSSatish Balay 2457087cfbeSBarry Smith PetscErrorCode PetscPostIrecvScalar(MPI_Comm comm,PetscMPIInt tag,PetscMPIInt nrecvs,const PetscMPIInt onodes[],const PetscMPIInt olengths[],PetscScalar ***rbuf,MPI_Request **r_waits) 246e5c89e4eSSatish Balay { 247e5c89e4eSSatish Balay PetscErrorCode ierr; 248052f0c41SBarry Smith PetscMPIInt i; 249e5c89e4eSSatish Balay PetscScalar **rbuf_t; 250e5c89e4eSSatish Balay MPI_Request *r_waits_t; 251c05d87d6SBarry Smith PetscInt len = 0; 252e5c89e4eSSatish Balay 253fe28d99cSBarry Smith PetscFunctionBegin; 254e5c89e4eSSatish Balay /* compute memory required for recv buffers */ 255e5c89e4eSSatish Balay for (i=0; i<nrecvs; i++) len += olengths[i]; /* each message length */ 256e5c89e4eSSatish Balay 257e5c89e4eSSatish Balay /* allocate memory for recv buffers */ 258854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&rbuf_t);CHKERRQ(ierr); 259785e854fSJed Brown ierr = PetscMalloc1(len,&rbuf_t[0]);CHKERRQ(ierr); 260e5c89e4eSSatish Balay for (i=1; i<nrecvs; ++i) rbuf_t[i] = rbuf_t[i-1] + olengths[i-1]; 261e5c89e4eSSatish Balay 262e5c89e4eSSatish Balay /* Post the receives */ 263785e854fSJed Brown ierr = PetscMalloc1(nrecvs,&r_waits_t);CHKERRQ(ierr); 264e5c89e4eSSatish Balay for (i=0; i<nrecvs; ++i) { 265e5c89e4eSSatish Balay ierr = MPI_Irecv(rbuf_t[i],olengths[i],MPIU_SCALAR,onodes[i],tag,comm,r_waits_t+i);CHKERRQ(ierr); 266e5c89e4eSSatish Balay } 267e5c89e4eSSatish Balay 268e5c89e4eSSatish Balay *rbuf = rbuf_t; 269e5c89e4eSSatish Balay *r_waits = r_waits_t; 270e5c89e4eSSatish Balay PetscFunctionReturn(0); 271e5c89e4eSSatish Balay } 272