1af0996ceSBarry Smith #include <petsc/private/tsimpl.h> /*I "petscts.h" I*/ 24042b796SJed Brown #include <petscdm.h> 37d5697caSHong Zhang 47d5697caSHong Zhang static const PetscInt TSEIMEXDefault = 3; 57d5697caSHong Zhang 67d5697caSHong Zhang typedef struct { 77d5697caSHong Zhang PetscInt row_ind; /* Return the term T[row_ind][col_ind] */ 87d5697caSHong Zhang PetscInt col_ind; /* Return the term T[row_ind][col_ind] */ 97d5697caSHong Zhang PetscInt nstages; /* Numbers of stages in current scheme */ 107d5697caSHong Zhang PetscInt max_rows; /* Maximum number of rows */ 117d5697caSHong Zhang PetscInt *N; /* Harmonic sequence N[max_rows] */ 127d5697caSHong Zhang Vec Y; /* States computed during the step, used to complete the step */ 137d5697caSHong Zhang Vec Z; /* For shift*(Y-Z) */ 147d5697caSHong Zhang Vec *T; /* Working table, size determined by nstages */ 157d5697caSHong Zhang Vec YdotRHS; /* f(x) Work vector holding YdotRHS during residual evaluation */ 167d5697caSHong Zhang Vec YdotI; /* xdot-g(x) Work vector holding YdotI = G(t,x,xdot) when xdot =0 */ 177d5697caSHong Zhang Vec Ydot; /* f(x)+g(x) Work vector */ 187d5697caSHong Zhang Vec VecSolPrev; /* Work vector holding the solution from the previous step (used for interpolation) */ 197d5697caSHong Zhang PetscReal shift; 207d5697caSHong Zhang PetscReal ctime; 217d5697caSHong Zhang PetscBool recompute_jacobian; /* Recompute the Jacobian at each stage, default is to freeze the Jacobian at the start of each step */ 227d5697caSHong Zhang PetscBool ord_adapt; /* order adapativity */ 237d5697caSHong Zhang TSStepStatus status; 247d5697caSHong Zhang } TS_EIMEX; 257d5697caSHong Zhang 267d5697caSHong Zhang /* This function is pure */ 27d71ae5a4SJacob Faibussowitsch static PetscInt Map(PetscInt i, PetscInt j, PetscInt s) 28d71ae5a4SJacob Faibussowitsch { 297d5697caSHong Zhang return ((2 * s - j + 1) * j / 2 + i - j); 307d5697caSHong Zhang } 317d5697caSHong Zhang 32d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEvaluateStep_EIMEX(TS ts, PetscInt order, Vec X, PetscBool *done) 33d71ae5a4SJacob Faibussowitsch { 347d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 357d5697caSHong Zhang const PetscInt ns = ext->nstages; 367d5697caSHong Zhang PetscFunctionBegin; 379566063dSJacob Faibussowitsch PetscCall(VecCopy(ext->T[Map(ext->row_ind, ext->col_ind, ns)], X)); 383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 397d5697caSHong Zhang } 407d5697caSHong Zhang 41d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSStage_EIMEX(TS ts, PetscInt istage) 42d71ae5a4SJacob Faibussowitsch { 437d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 447d5697caSHong Zhang PetscReal h; 457d5697caSHong Zhang Vec Y = ext->Y, Z = ext->Z; 467d5697caSHong Zhang SNES snes; 477d5697caSHong Zhang TSAdapt adapt; 487d5697caSHong Zhang PetscInt i, its, lits; 497d5697caSHong Zhang PetscBool accept; 507d5697caSHong Zhang 517d5697caSHong Zhang PetscFunctionBegin; 529566063dSJacob Faibussowitsch PetscCall(TSGetSNES(ts, &snes)); 537d5697caSHong Zhang h = ts->time_step / ext->N[istage]; /* step size for the istage-th stage */ 547d5697caSHong Zhang ext->shift = 1. / h; 559566063dSJacob Faibussowitsch PetscCall(SNESSetLagJacobian(snes, -2)); /* Recompute the Jacobian on this solve, but not again */ 569566063dSJacob Faibussowitsch PetscCall(VecCopy(ext->VecSolPrev, Y)); /* Take the previous solution as initial step */ 577d5697caSHong Zhang 587d5697caSHong Zhang for (i = 0; i < ext->N[istage]; i++) { 597d5697caSHong Zhang ext->ctime = ts->ptime + h * i; 609566063dSJacob Faibussowitsch PetscCall(VecCopy(Y, Z)); /* Save the solution of the previous substep */ 619566063dSJacob Faibussowitsch PetscCall(SNESSolve(snes, NULL, Y)); 629566063dSJacob Faibussowitsch PetscCall(SNESGetIterationNumber(snes, &its)); 639566063dSJacob Faibussowitsch PetscCall(SNESGetLinearSolveIterations(snes, &lits)); 649371c9d4SSatish Balay ts->snes_its += its; 659371c9d4SSatish Balay ts->ksp_its += lits; 669566063dSJacob Faibussowitsch PetscCall(TSGetAdapt(ts, &adapt)); 679566063dSJacob Faibussowitsch PetscCall(TSAdaptCheckStage(adapt, ts, ext->ctime, Y, &accept)); 687d5697caSHong Zhang } 693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 707d5697caSHong Zhang } 717d5697caSHong Zhang 72d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSStep_EIMEX(TS ts) 73d71ae5a4SJacob Faibussowitsch { 747d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 757d5697caSHong Zhang const PetscInt ns = ext->nstages; 767d5697caSHong Zhang Vec *T = ext->T, Y = ext->Y; 777d5697caSHong Zhang SNES snes; 787d5697caSHong Zhang PetscInt i, j; 797d5697caSHong Zhang PetscBool accept = PETSC_FALSE; 807453f775SEmil Constantinescu PetscReal alpha, local_error, local_error_a, local_error_r; 817d5697caSHong Zhang 82d0609cedSBarry Smith PetscFunctionBegin; 839566063dSJacob Faibussowitsch PetscCall(TSGetSNES(ts, &snes)); 849566063dSJacob Faibussowitsch PetscCall(SNESSetType(snes, "ksponly")); 857d5697caSHong Zhang ext->status = TS_STEP_INCOMPLETE; 867d5697caSHong Zhang 879566063dSJacob Faibussowitsch PetscCall(VecCopy(ts->vec_sol, ext->VecSolPrev)); 887d5697caSHong Zhang 897d5697caSHong Zhang /* Apply n_j steps of the base method to obtain solutions of T(j,1),1<=j<=s */ 907d5697caSHong Zhang for (j = 0; j < ns; j++) { 919566063dSJacob Faibussowitsch PetscCall(TSStage_EIMEX(ts, j)); 929566063dSJacob Faibussowitsch PetscCall(VecCopy(Y, T[j])); 937d5697caSHong Zhang } 947d5697caSHong Zhang 957d5697caSHong Zhang for (i = 1; i < ns; i++) { 967d5697caSHong Zhang for (j = i; j < ns; j++) { 977d5697caSHong Zhang alpha = -(PetscReal)ext->N[j] / ext->N[j - i]; 98d0609cedSBarry Smith PetscCall(VecAXPBYPCZ(T[Map(j, i, ns)], alpha, 1.0, 0, T[Map(j, i - 1, ns)], T[Map(j - 1, i - 1, ns)])); /* T[j][i]=alpha*T[j][i-1]+T[j-1][i-1] */ 997d5697caSHong Zhang alpha = 1.0 / (1.0 + alpha); 1009566063dSJacob Faibussowitsch PetscCall(VecScale(T[Map(j, i, ns)], alpha)); 1017d5697caSHong Zhang } 1027d5697caSHong Zhang } 1037d5697caSHong Zhang 1049566063dSJacob Faibussowitsch PetscCall(TSEvaluateStep(ts, ns, ts->vec_sol, NULL)); /*update ts solution */ 1057d5697caSHong Zhang 1067d5697caSHong Zhang if (ext->ord_adapt && ext->nstages < ext->max_rows) { 1077d5697caSHong Zhang accept = PETSC_FALSE; 1087d5697caSHong Zhang while (!accept && ext->nstages < ext->max_rows) { 1099566063dSJacob Faibussowitsch PetscCall(TSErrorWeightedNorm(ts, ts->vec_sol, T[Map(ext->nstages - 1, ext->nstages - 2, ext->nstages)], ts->adapt->wnormtype, &local_error, &local_error_a, &local_error_r)); 1107d5697caSHong Zhang accept = (local_error < 1.0) ? PETSC_TRUE : PETSC_FALSE; 1117d5697caSHong Zhang 1127d5697caSHong Zhang if (!accept) { /* add one more stage*/ 1139566063dSJacob Faibussowitsch PetscCall(TSStage_EIMEX(ts, ext->nstages)); 1149371c9d4SSatish Balay ext->nstages++; 1159371c9d4SSatish Balay ext->row_ind++; 1169371c9d4SSatish Balay ext->col_ind++; 1177d5697caSHong Zhang /*T table need to be recycled*/ 1189566063dSJacob Faibussowitsch PetscCall(VecDuplicateVecs(ts->vec_sol, (1 + ext->nstages) * ext->nstages / 2, &ext->T)); 1197d5697caSHong Zhang for (i = 0; i < ext->nstages - 1; i++) { 12048a46eb9SPierre Jolivet for (j = 0; j <= i; j++) PetscCall(VecCopy(T[Map(i, j, ext->nstages - 1)], ext->T[Map(i, j, ext->nstages)])); 1217d5697caSHong Zhang } 1229566063dSJacob Faibussowitsch PetscCall(VecDestroyVecs(ext->nstages * (ext->nstages - 1) / 2, &T)); 1237d5697caSHong Zhang T = ext->T; /*reset the pointer*/ 1247d5697caSHong Zhang /*recycling finished, store the new solution*/ 1259566063dSJacob Faibussowitsch PetscCall(VecCopy(Y, T[ext->nstages - 1])); 1267d5697caSHong Zhang /*extrapolation for the newly added stage*/ 1277d5697caSHong Zhang for (i = 1; i < ext->nstages; i++) { 1287d5697caSHong Zhang alpha = -(PetscReal)ext->N[ext->nstages - 1] / ext->N[ext->nstages - 1 - i]; 129d0609cedSBarry Smith PetscCall(VecAXPBYPCZ(T[Map(ext->nstages - 1, i, ext->nstages)], alpha, 1.0, 0, T[Map(ext->nstages - 1, i - 1, ext->nstages)], T[Map(ext->nstages - 1 - 1, i - 1, ext->nstages)])); /*T[ext->nstages-1][i]=alpha*T[ext->nstages-1][i-1]+T[ext->nstages-1-1][i-1]*/ 1307d5697caSHong Zhang alpha = 1.0 / (1.0 + alpha); 1319566063dSJacob Faibussowitsch PetscCall(VecScale(T[Map(ext->nstages - 1, i, ext->nstages)], alpha)); 1327d5697caSHong Zhang } 1337d5697caSHong Zhang /*update ts solution */ 1349566063dSJacob Faibussowitsch PetscCall(TSEvaluateStep(ts, ext->nstages, ts->vec_sol, NULL)); 1357d5697caSHong Zhang } /*end if !accept*/ 1367d5697caSHong Zhang } /*end while*/ 1377d5697caSHong Zhang 13848a46eb9SPierre Jolivet if (ext->nstages == ext->max_rows) PetscCall(PetscInfo(ts, "Max number of rows has been used\n")); 1397d5697caSHong Zhang } /*end if ext->ord_adapt*/ 1407d5697caSHong Zhang ts->ptime += ts->time_step; 1417d5697caSHong Zhang ext->status = TS_STEP_COMPLETE; 1427d5697caSHong Zhang 1437d5697caSHong Zhang if (ext->status != TS_STEP_COMPLETE && !ts->reason) ts->reason = TS_DIVERGED_STEP_REJECTED; 1443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1457d5697caSHong Zhang } 1467d5697caSHong Zhang 1477d5697caSHong Zhang /* cubic Hermit spline */ 148d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSInterpolate_EIMEX(TS ts, PetscReal itime, Vec X) 149d71ae5a4SJacob Faibussowitsch { 1507d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 1517d5697caSHong Zhang PetscReal t, a, b; 152be5899b3SLisandro Dalcin Vec Y0 = ext->VecSolPrev, Y1 = ext->Y, Ydot = ext->Ydot, YdotI = ext->YdotI; 153be5899b3SLisandro Dalcin const PetscReal h = ts->ptime - ts->ptime_prev; 1547d5697caSHong Zhang PetscFunctionBegin; 1557d5697caSHong Zhang t = (itime - ts->ptime + h) / h; 1567d5697caSHong Zhang /* YdotI = -f(x)-g(x) */ 1577d5697caSHong Zhang 1589566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(Ydot)); 1599566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts, ts->ptime - h, Y0, Ydot, YdotI, PETSC_FALSE)); 1607d5697caSHong Zhang 16116dc5bacSEmil Constantinescu a = 2.0 * t * t * t - 3.0 * t * t + 1.0; 16216dc5bacSEmil Constantinescu b = -(t * t * t - 2.0 * t * t + t) * h; 1639566063dSJacob Faibussowitsch PetscCall(VecAXPBYPCZ(X, a, b, 0.0, Y0, YdotI)); 1647d5697caSHong Zhang 1659566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts, ts->ptime, Y1, Ydot, YdotI, PETSC_FALSE)); 16616dc5bacSEmil Constantinescu a = -2.0 * t * t * t + 3.0 * t * t; 16716dc5bacSEmil Constantinescu b = -(t * t * t - t * t) * h; 1689566063dSJacob Faibussowitsch PetscCall(VecAXPBYPCZ(X, a, b, 1.0, Y1, YdotI)); 1697d5697caSHong Zhang 1703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1717d5697caSHong Zhang } 1727d5697caSHong Zhang 173d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSReset_EIMEX(TS ts) 174d71ae5a4SJacob Faibussowitsch { 1757d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 1767d5697caSHong Zhang PetscInt ns; 1777d5697caSHong Zhang 1787d5697caSHong Zhang PetscFunctionBegin; 1797d5697caSHong Zhang ns = ext->nstages; 1809566063dSJacob Faibussowitsch PetscCall(VecDestroyVecs((1 + ns) * ns / 2, &ext->T)); 1819566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Y)); 1829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Z)); 1839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->YdotRHS)); 1849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->YdotI)); 1859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Ydot)); 1869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->VecSolPrev)); 1879566063dSJacob Faibussowitsch PetscCall(PetscFree(ext->N)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1897d5697caSHong Zhang } 1907d5697caSHong Zhang 191d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSDestroy_EIMEX(TS ts) 192d71ae5a4SJacob Faibussowitsch { 1937d5697caSHong Zhang PetscFunctionBegin; 1949566063dSJacob Faibussowitsch PetscCall(TSReset_EIMEX(ts)); 1959566063dSJacob Faibussowitsch PetscCall(PetscFree(ts->data)); 1969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetMaxRows_C", NULL)); 1979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetRowCol_C", NULL)); 1989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetOrdAdapt_C", NULL)); 1993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2007d5697caSHong Zhang } 2017d5697caSHong Zhang 202d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXGetVecs(TS ts, DM dm, Vec *Z, Vec *Ydot, Vec *YdotI, Vec *YdotRHS) 203d71ae5a4SJacob Faibussowitsch { 2047d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 2057d5697caSHong Zhang 2067d5697caSHong Zhang PetscFunctionBegin; 2077d5697caSHong Zhang if (Z) { 2087d5697caSHong Zhang if (dm && dm != ts->dm) { 2099566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_Z", Z)); 2107d5697caSHong Zhang } else *Z = ext->Z; 2117d5697caSHong Zhang } 2127d5697caSHong Zhang if (Ydot) { 2137d5697caSHong Zhang if (dm && dm != ts->dm) { 2149566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_Ydot", Ydot)); 2157d5697caSHong Zhang } else *Ydot = ext->Ydot; 2167d5697caSHong Zhang } 2177d5697caSHong Zhang if (YdotI) { 2187d5697caSHong Zhang if (dm && dm != ts->dm) { 2199566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_YdotI", YdotI)); 2207d5697caSHong Zhang } else *YdotI = ext->YdotI; 2217d5697caSHong Zhang } 2227d5697caSHong Zhang if (YdotRHS) { 2237d5697caSHong Zhang if (dm && dm != ts->dm) { 2249566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_YdotRHS", YdotRHS)); 2257d5697caSHong Zhang } else *YdotRHS = ext->YdotRHS; 2267d5697caSHong Zhang } 2273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2287d5697caSHong Zhang } 2297d5697caSHong Zhang 230d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXRestoreVecs(TS ts, DM dm, Vec *Z, Vec *Ydot, Vec *YdotI, Vec *YdotRHS) 231d71ae5a4SJacob Faibussowitsch { 2327d5697caSHong Zhang PetscFunctionBegin; 2337d5697caSHong Zhang if (Z) { 23448a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_Z", Z)); 2357d5697caSHong Zhang } 2367d5697caSHong Zhang if (Ydot) { 23748a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_Ydot", Ydot)); 2387d5697caSHong Zhang } 2397d5697caSHong Zhang if (YdotI) { 24048a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_YdotI", YdotI)); 2417d5697caSHong Zhang } 2427d5697caSHong Zhang if (YdotRHS) { 24348a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_YdotRHS", YdotRHS)); 2447d5697caSHong Zhang } 2453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2467d5697caSHong Zhang } 2477d5697caSHong Zhang 2487d5697caSHong Zhang /* 2497d5697caSHong Zhang This defines the nonlinear equation that is to be solved with SNES 2507d5697caSHong Zhang Fn[t0+Theta*dt, U, (U-U0)*shift] = 0 2517d5697caSHong Zhang In the case of Backward Euler, Fn = (U-U0)/h-g(t1,U)) 2527d5697caSHong Zhang Since FormIFunction calculates G = ydot - g(t,y), ydot will be set to (U-U0)/h 2537d5697caSHong Zhang */ 254d71ae5a4SJacob Faibussowitsch static PetscErrorCode SNESTSFormFunction_EIMEX(SNES snes, Vec X, Vec G, TS ts) 255d71ae5a4SJacob Faibussowitsch { 2567d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 2577d5697caSHong Zhang Vec Ydot, Z; 2587d5697caSHong Zhang DM dm, dmsave; 2597d5697caSHong Zhang 2607d5697caSHong Zhang PetscFunctionBegin; 2619566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(G)); 2627d5697caSHong Zhang 2639566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 2649566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, dm, &Z, &Ydot, NULL, NULL)); 2659566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(Ydot)); 2667d5697caSHong Zhang dmsave = ts->dm; 2677d5697caSHong Zhang ts->dm = dm; 2689566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts, ext->ctime, X, Ydot, G, PETSC_FALSE)); 2697d5697caSHong Zhang /* PETSC_FALSE indicates non-imex, adding explicit RHS to the implicit I function. */ 2709566063dSJacob Faibussowitsch PetscCall(VecCopy(G, Ydot)); 2717d5697caSHong Zhang ts->dm = dmsave; 2729566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, dm, &Z, &Ydot, NULL, NULL)); 2737d5697caSHong Zhang 2743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2757d5697caSHong Zhang } 2767d5697caSHong Zhang 2777d5697caSHong Zhang /* 2787d5697caSHong Zhang This defined the Jacobian matrix for SNES. Jn = (I/h-g'(t,y)) 2797d5697caSHong Zhang */ 280d71ae5a4SJacob Faibussowitsch static PetscErrorCode SNESTSFormJacobian_EIMEX(SNES snes, Vec X, Mat A, Mat B, TS ts) 281d71ae5a4SJacob Faibussowitsch { 2827d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 2837d5697caSHong Zhang Vec Ydot; 2847d5697caSHong Zhang DM dm, dmsave; 2857d5697caSHong Zhang PetscFunctionBegin; 2869566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 2879566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, dm, NULL, &Ydot, NULL, NULL)); 2889566063dSJacob Faibussowitsch /* PetscCall(VecZeroEntries(Ydot)); */ 2897d5697caSHong Zhang /* ext->Ydot have already been computed in SNESTSFormFunction_EIMEX (SNES guarantees this) */ 2907d5697caSHong Zhang dmsave = ts->dm; 2917d5697caSHong Zhang ts->dm = dm; 2929566063dSJacob Faibussowitsch PetscCall(TSComputeIJacobian(ts, ts->ptime, X, Ydot, ext->shift, A, B, PETSC_TRUE)); 2937d5697caSHong Zhang ts->dm = dmsave; 2949566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, dm, NULL, &Ydot, NULL, NULL)); 2953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2967d5697caSHong Zhang } 2977d5697caSHong Zhang 298d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCoarsenHook_TSEIMEX(DM fine, DM coarse, void *ctx) 299d71ae5a4SJacob Faibussowitsch { 3007d5697caSHong Zhang PetscFunctionBegin; 3013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3027d5697caSHong Zhang } 3037d5697caSHong Zhang 304d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMRestrictHook_TSEIMEX(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse, void *ctx) 305d71ae5a4SJacob Faibussowitsch { 3067d5697caSHong Zhang TS ts = (TS)ctx; 3077d5697caSHong Zhang Vec Z, Z_c; 3087d5697caSHong Zhang 3097d5697caSHong Zhang PetscFunctionBegin; 3109566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, fine, &Z, NULL, NULL, NULL)); 3119566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, coarse, &Z_c, NULL, NULL, NULL)); 3129566063dSJacob Faibussowitsch PetscCall(MatRestrict(restrct, Z, Z_c)); 3139566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(Z_c, rscale, Z_c)); 3149566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, fine, &Z, NULL, NULL, NULL)); 3159566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, coarse, &Z_c, NULL, NULL, NULL)); 3163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3177d5697caSHong Zhang } 3187d5697caSHong Zhang 319d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSSetUp_EIMEX(TS ts) 320d71ae5a4SJacob Faibussowitsch { 3217d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 3227d5697caSHong Zhang DM dm; 3237d5697caSHong Zhang 324955c1f14SBarry Smith PetscFunctionBegin; 3257d5697caSHong Zhang if (!ext->N) { /* ext->max_rows not set */ 3269566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetMaxRows(ts, TSEIMEXDefault)); 3277d5697caSHong Zhang } 3287d5697caSHong Zhang if (-1 == ext->row_ind && -1 == ext->col_ind) { 3299566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetRowCol(ts, ext->max_rows, ext->max_rows)); 3307d5697caSHong Zhang } else { /* ext->row_ind and col_ind already set */ 33148a46eb9SPierre Jolivet if (ext->ord_adapt) PetscCall(PetscInfo(ts, "Order adaptivity is enabled and TSEIMEXSetRowCol or -ts_eimex_row_col option will take no effect\n")); 3327d5697caSHong Zhang } 3337d5697caSHong Zhang 3347d5697caSHong Zhang if (ext->ord_adapt) { 3357d5697caSHong Zhang ext->nstages = 2; /* Start with the 2-stage scheme */ 3369566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetRowCol(ts, ext->nstages, ext->nstages)); 3377d5697caSHong Zhang } else { 3387d5697caSHong Zhang ext->nstages = ext->max_rows; /* by default nstages is the same as max_rows, this can be changed by setting order adaptivity */ 3397d5697caSHong Zhang } 3407d5697caSHong Zhang 3419566063dSJacob Faibussowitsch PetscCall(TSGetAdapt(ts, &ts->adapt)); 3422ffb9264SLisandro Dalcin 3439566063dSJacob Faibussowitsch PetscCall(VecDuplicateVecs(ts->vec_sol, (1 + ext->nstages) * ext->nstages / 2, &ext->T)); /* full T table */ 3449566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->YdotI)); 3459566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->YdotRHS)); 3469566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->Ydot)); 3479566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->VecSolPrev)); 3489566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->Y)); 3499566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->Z)); 3509566063dSJacob Faibussowitsch PetscCall(TSGetDM(ts, &dm)); 3511baa6e33SBarry Smith if (dm) PetscCall(DMCoarsenHookAdd(dm, DMCoarsenHook_TSEIMEX, DMRestrictHook_TSEIMEX, ts)); 3523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3537d5697caSHong Zhang } 3547d5697caSHong Zhang 355d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSSetFromOptions_EIMEX(TS ts, PetscOptionItems *PetscOptionsObject) 356d71ae5a4SJacob Faibussowitsch { 3577d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 3589200755eSBarry Smith PetscInt tindex[2]; 3597d5697caSHong Zhang PetscInt np = 2, nrows = TSEIMEXDefault; 3609200755eSBarry Smith 3617d5697caSHong Zhang PetscFunctionBegin; 3629200755eSBarry Smith tindex[0] = TSEIMEXDefault; 3639200755eSBarry Smith tindex[1] = TSEIMEXDefault; 364d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "EIMEX ODE solver options"); 3657d5697caSHong Zhang { 3667d5697caSHong Zhang PetscBool flg; 3679566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-ts_eimex_max_rows", "Define the maximum number of rows used", "TSEIMEXSetMaxRows", nrows, &nrows, &flg)); /* default value 3 */ 3681baa6e33SBarry Smith if (flg) PetscCall(TSEIMEXSetMaxRows(ts, nrows)); 3699566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-ts_eimex_row_col", "Return the specific term in the T table", "TSEIMEXSetRowCol", tindex, &np, &flg)); 37048a46eb9SPierre Jolivet if (flg) PetscCall(TSEIMEXSetRowCol(ts, tindex[0], tindex[1])); 3719566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-ts_eimex_order_adapt", "Solve the problem with adaptive order", "TSEIMEXSetOrdAdapt", ext->ord_adapt, &ext->ord_adapt, NULL)); 3727d5697caSHong Zhang } 373d0609cedSBarry Smith PetscOptionsHeadEnd(); 3743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3757d5697caSHong Zhang } 3767d5697caSHong Zhang 377d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSView_EIMEX(TS ts, PetscViewer viewer) 378d71ae5a4SJacob Faibussowitsch { 3797d5697caSHong Zhang PetscFunctionBegin; 3803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3817d5697caSHong Zhang } 3827d5697caSHong Zhang 3837d5697caSHong Zhang /*@C 384bcf0153eSBarry Smith TSEIMEXSetMaxRows - Set the maximum number of rows for `TSEIMEX` schemes 3857d5697caSHong Zhang 38620f4b53cSBarry Smith Logically Collective 3877d5697caSHong Zhang 388d8d19677SJose E. Roman Input Parameters: 3897d5697caSHong Zhang + ts - timestepping context 3907d5697caSHong Zhang - nrows - maximum number of rows 3917d5697caSHong Zhang 3927d5697caSHong Zhang Level: intermediate 3937d5697caSHong Zhang 3941cc06b55SBarry Smith .seealso: [](ch_ts), `TSEIMEXSetRowCol()`, `TSEIMEXSetOrdAdapt()`, `TSEIMEX` 3957d5697caSHong Zhang @*/ 396d71ae5a4SJacob Faibussowitsch PetscErrorCode TSEIMEXSetMaxRows(TS ts, PetscInt nrows) 397d71ae5a4SJacob Faibussowitsch { 3987d5697caSHong Zhang PetscFunctionBegin; 3997d5697caSHong Zhang PetscValidHeaderSpecific(ts, TS_CLASSID, 1); 400cac4c232SBarry Smith PetscTryMethod(ts, "TSEIMEXSetMaxRows_C", (TS, PetscInt), (ts, nrows)); 4013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4027d5697caSHong Zhang } 4037d5697caSHong Zhang 4047d5697caSHong Zhang /*@C 4052fe279fdSBarry Smith TSEIMEXSetRowCol - Set the number of rows and the number of columns for the tableau that represents the T solution in the `TSEIMEX` scheme 4067d5697caSHong Zhang 40720f4b53cSBarry Smith Logically Collective 4087d5697caSHong Zhang 409d8d19677SJose E. Roman Input Parameters: 4107d5697caSHong Zhang + ts - timestepping context 4112fe279fdSBarry Smith . row - the row 4122fe279fdSBarry Smith - col - the column 4137d5697caSHong Zhang 4147d5697caSHong Zhang Level: intermediate 4157d5697caSHong Zhang 4161cc06b55SBarry Smith .seealso: [](ch_ts), `TSEIMEXSetMaxRows()`, `TSEIMEXSetOrdAdapt()`, `TSEIMEX` 4177d5697caSHong Zhang @*/ 418d71ae5a4SJacob Faibussowitsch PetscErrorCode TSEIMEXSetRowCol(TS ts, PetscInt row, PetscInt col) 419d71ae5a4SJacob Faibussowitsch { 4207d5697caSHong Zhang PetscFunctionBegin; 4217d5697caSHong Zhang PetscValidHeaderSpecific(ts, TS_CLASSID, 1); 422cac4c232SBarry Smith PetscTryMethod(ts, "TSEIMEXSetRowCol_C", (TS, PetscInt, PetscInt), (ts, row, col)); 4233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4247d5697caSHong Zhang } 4257d5697caSHong Zhang 4267d5697caSHong Zhang /*@C 427bcf0153eSBarry Smith TSEIMEXSetOrdAdapt - Set the order adaptativity for the `TSEIMEX` schemes 4287d5697caSHong Zhang 42920f4b53cSBarry Smith Logically Collective 4307d5697caSHong Zhang 431d8d19677SJose E. Roman Input Parameters: 4327d5697caSHong Zhang + ts - timestepping context 433b43aa488SJacob Faibussowitsch - flg - index in the T table 4347d5697caSHong Zhang 4357d5697caSHong Zhang Level: intermediate 4367d5697caSHong Zhang 43742747ad1SJacob Faibussowitsch .seealso: [](ch_ts), `TSEIMEXSetRowCol()`, `TSEIMEX` 4387d5697caSHong Zhang @*/ 439d71ae5a4SJacob Faibussowitsch PetscErrorCode TSEIMEXSetOrdAdapt(TS ts, PetscBool flg) 440d71ae5a4SJacob Faibussowitsch { 4417d5697caSHong Zhang PetscFunctionBegin; 4427d5697caSHong Zhang PetscValidHeaderSpecific(ts, TS_CLASSID, 1); 443cac4c232SBarry Smith PetscTryMethod(ts, "TSEIMEXSetOrdAdapt_C", (TS, PetscBool), (ts, flg)); 4443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4457d5697caSHong Zhang } 4467d5697caSHong Zhang 447d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXSetMaxRows_EIMEX(TS ts, PetscInt nrows) 448d71ae5a4SJacob Faibussowitsch { 4497d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 4507d5697caSHong Zhang PetscInt i; 4517d5697caSHong Zhang 4527d5697caSHong Zhang PetscFunctionBegin; 45363a3b9bcSJacob Faibussowitsch PetscCheck(nrows >= 0 && nrows <= 100, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "Max number of rows (current value %" PetscInt_FMT ") should be an integer number between 1 and 100", nrows); 4549566063dSJacob Faibussowitsch PetscCall(PetscFree(ext->N)); 4557d5697caSHong Zhang ext->max_rows = nrows; 4569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrows, &ext->N)); 4577d5697caSHong Zhang for (i = 0; i < nrows; i++) ext->N[i] = i + 1; 4583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4597d5697caSHong Zhang } 4607d5697caSHong Zhang 461d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXSetRowCol_EIMEX(TS ts, PetscInt row, PetscInt col) 462d71ae5a4SJacob Faibussowitsch { 4637d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 4647d5697caSHong Zhang 4657d5697caSHong Zhang PetscFunctionBegin; 46663a3b9bcSJacob Faibussowitsch PetscCheck(row >= 1 && col >= 1, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "The row or column index (current value %" PetscInt_FMT ",%" PetscInt_FMT ") should not be less than 1 ", row, col); 4679371c9d4SSatish Balay PetscCheck(row <= ext->max_rows && col <= ext->max_rows, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "The row or column index (current value %" PetscInt_FMT ",%" PetscInt_FMT ") exceeds the maximum number of rows %" PetscInt_FMT, row, col, 4689371c9d4SSatish Balay ext->max_rows); 46963a3b9bcSJacob Faibussowitsch PetscCheck(col <= row, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "The column index (%" PetscInt_FMT ") exceeds the row index (%" PetscInt_FMT ")", col, row); 4707d5697caSHong Zhang 4717d5697caSHong Zhang ext->row_ind = row - 1; 4727d5697caSHong Zhang ext->col_ind = col - 1; /* Array index in C starts from 0 */ 4733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4747d5697caSHong Zhang } 4757d5697caSHong Zhang 476d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXSetOrdAdapt_EIMEX(TS ts, PetscBool flg) 477d71ae5a4SJacob Faibussowitsch { 4787d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 4797d5697caSHong Zhang PetscFunctionBegin; 4807d5697caSHong Zhang ext->ord_adapt = flg; 4813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4827d5697caSHong Zhang } 4837d5697caSHong Zhang 4847d5697caSHong Zhang /*MC 485*1d27aa22SBarry Smith TSEIMEX - Time stepping with Extrapolated IMEX methods {cite}`constantinescu_a2010a`. 486679f3ef1SBarry Smith 487679f3ef1SBarry Smith These methods are intended for problems with well-separated time scales, especially when a slow scale is strongly nonlinear such that it 488bcf0153eSBarry Smith is expensive to solve with a fully implicit method. The user should provide the stiff part of the equation using `TSSetIFunction()` and the 489bcf0153eSBarry Smith non-stiff part with `TSSetRHSFunction()`. 490bcf0153eSBarry Smith 491bcf0153eSBarry Smith Level: beginner 4927d5697caSHong Zhang 4937d5697caSHong Zhang Notes: 494bcf0153eSBarry Smith The default is a 3-stage scheme, it can be changed with `TSEIMEXSetMaxRows()` or -ts_eimex_max_rows 4957d5697caSHong Zhang 496*1d27aa22SBarry Smith This method currently only works with ODE, for which the stiff part $ G(t,X,Xdot) $ has the form $ Xdot + Ghat(t,X)$. 4977d5697caSHong Zhang 498679f3ef1SBarry Smith The general system is written as 499679f3ef1SBarry Smith 500*1d27aa22SBarry Smith $$ 501679f3ef1SBarry Smith G(t,X,Xdot) = F(t,X) 502*1d27aa22SBarry Smith $$ 503679f3ef1SBarry Smith 504679f3ef1SBarry Smith where G represents the stiff part and F represents the non-stiff part. The user should provide the stiff part 505bcf0153eSBarry Smith of the equation using TSSetIFunction() and the non-stiff part with `TSSetRHSFunction()`. 506679f3ef1SBarry Smith This method is designed to be linearly implicit on G and can use an approximate and lagged Jacobian. 507679f3ef1SBarry Smith 508679f3ef1SBarry Smith Another common form for the system is 509679f3ef1SBarry Smith 510*1d27aa22SBarry Smith $$ 511679f3ef1SBarry Smith y'=f(x)+g(x) 512*1d27aa22SBarry Smith $$ 513679f3ef1SBarry Smith 514679f3ef1SBarry Smith The relationship between F,G and f,g is 515679f3ef1SBarry Smith 516*1d27aa22SBarry Smith $$ 517679f3ef1SBarry Smith G = y'-g(x), F = f(x) 518*1d27aa22SBarry Smith $$ 519679f3ef1SBarry Smith 5201cc06b55SBarry Smith .seealso: [](ch_ts), `TSCreate()`, `TS`, `TSSetType()`, `TSEIMEXSetMaxRows()`, `TSEIMEXSetRowCol()`, `TSEIMEXSetOrdAdapt()`, `TSType` 5217d5697caSHong Zhang M*/ 522d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode TSCreate_EIMEX(TS ts) 523d71ae5a4SJacob Faibussowitsch { 5247d5697caSHong Zhang TS_EIMEX *ext; 5257d5697caSHong Zhang 5267d5697caSHong Zhang PetscFunctionBegin; 5277d5697caSHong Zhang 5287d5697caSHong Zhang ts->ops->reset = TSReset_EIMEX; 5297d5697caSHong Zhang ts->ops->destroy = TSDestroy_EIMEX; 5307d5697caSHong Zhang ts->ops->view = TSView_EIMEX; 5317d5697caSHong Zhang ts->ops->setup = TSSetUp_EIMEX; 5327d5697caSHong Zhang ts->ops->step = TSStep_EIMEX; 5337d5697caSHong Zhang ts->ops->interpolate = TSInterpolate_EIMEX; 5347d5697caSHong Zhang ts->ops->evaluatestep = TSEvaluateStep_EIMEX; 5357d5697caSHong Zhang ts->ops->setfromoptions = TSSetFromOptions_EIMEX; 5367d5697caSHong Zhang ts->ops->snesfunction = SNESTSFormFunction_EIMEX; 5377d5697caSHong Zhang ts->ops->snesjacobian = SNESTSFormJacobian_EIMEX; 5382ffb9264SLisandro Dalcin ts->default_adapt_type = TSADAPTNONE; 5397d5697caSHong Zhang 540efd4aadfSBarry Smith ts->usessnes = PETSC_TRUE; 541efd4aadfSBarry Smith 5424dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&ext)); 5437d5697caSHong Zhang ts->data = (void *)ext; 5447d5697caSHong Zhang 5457d5697caSHong Zhang ext->ord_adapt = PETSC_FALSE; /* By default, no order adapativity */ 5467d5697caSHong Zhang ext->row_ind = -1; 5477d5697caSHong Zhang ext->col_ind = -1; 5487d5697caSHong Zhang ext->max_rows = TSEIMEXDefault; 5497d5697caSHong Zhang ext->nstages = TSEIMEXDefault; 5507d5697caSHong Zhang 5519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetMaxRows_C", TSEIMEXSetMaxRows_EIMEX)); 5529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetRowCol_C", TSEIMEXSetRowCol_EIMEX)); 5539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetOrdAdapt_C", TSEIMEXSetOrdAdapt_EIMEX)); 5543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5557d5697caSHong Zhang } 556