1af0996ceSBarry Smith #include <petsc/private/tsimpl.h> /*I "petscts.h" I*/ 24042b796SJed Brown #include <petscdm.h> 37d5697caSHong Zhang 47d5697caSHong Zhang static const PetscInt TSEIMEXDefault = 3; 57d5697caSHong Zhang 67d5697caSHong Zhang typedef struct { 77d5697caSHong Zhang PetscInt row_ind; /* Return the term T[row_ind][col_ind] */ 87d5697caSHong Zhang PetscInt col_ind; /* Return the term T[row_ind][col_ind] */ 97d5697caSHong Zhang PetscInt nstages; /* Numbers of stages in current scheme */ 107d5697caSHong Zhang PetscInt max_rows; /* Maximum number of rows */ 117d5697caSHong Zhang PetscInt *N; /* Harmonic sequence N[max_rows] */ 127d5697caSHong Zhang Vec Y; /* States computed during the step, used to complete the step */ 137d5697caSHong Zhang Vec Z; /* For shift*(Y-Z) */ 147d5697caSHong Zhang Vec *T; /* Working table, size determined by nstages */ 157d5697caSHong Zhang Vec YdotRHS; /* f(x) Work vector holding YdotRHS during residual evaluation */ 167d5697caSHong Zhang Vec YdotI; /* xdot-g(x) Work vector holding YdotI = G(t,x,xdot) when xdot =0 */ 177d5697caSHong Zhang Vec Ydot; /* f(x)+g(x) Work vector */ 187d5697caSHong Zhang Vec VecSolPrev; /* Work vector holding the solution from the previous step (used for interpolation) */ 197d5697caSHong Zhang PetscReal shift; 207d5697caSHong Zhang PetscReal ctime; 217d5697caSHong Zhang PetscBool recompute_jacobian; /* Recompute the Jacobian at each stage, default is to freeze the Jacobian at the start of each step */ 227d5697caSHong Zhang PetscBool ord_adapt; /* order adapativity */ 237d5697caSHong Zhang TSStepStatus status; 247d5697caSHong Zhang } TS_EIMEX; 257d5697caSHong Zhang 267d5697caSHong Zhang /* This function is pure */ 27d71ae5a4SJacob Faibussowitsch static PetscInt Map(PetscInt i, PetscInt j, PetscInt s) 28d71ae5a4SJacob Faibussowitsch { 297d5697caSHong Zhang return ((2 * s - j + 1) * j / 2 + i - j); 307d5697caSHong Zhang } 317d5697caSHong Zhang 32d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEvaluateStep_EIMEX(TS ts, PetscInt order, Vec X, PetscBool *done) 33d71ae5a4SJacob Faibussowitsch { 347d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 357d5697caSHong Zhang const PetscInt ns = ext->nstages; 36*4d86920dSPierre Jolivet 377d5697caSHong Zhang PetscFunctionBegin; 389566063dSJacob Faibussowitsch PetscCall(VecCopy(ext->T[Map(ext->row_ind, ext->col_ind, ns)], X)); 393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 407d5697caSHong Zhang } 417d5697caSHong Zhang 42d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSStage_EIMEX(TS ts, PetscInt istage) 43d71ae5a4SJacob Faibussowitsch { 447d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 457d5697caSHong Zhang PetscReal h; 467d5697caSHong Zhang Vec Y = ext->Y, Z = ext->Z; 477d5697caSHong Zhang SNES snes; 487d5697caSHong Zhang TSAdapt adapt; 497d5697caSHong Zhang PetscInt i, its, lits; 507d5697caSHong Zhang PetscBool accept; 517d5697caSHong Zhang 527d5697caSHong Zhang PetscFunctionBegin; 539566063dSJacob Faibussowitsch PetscCall(TSGetSNES(ts, &snes)); 547d5697caSHong Zhang h = ts->time_step / ext->N[istage]; /* step size for the istage-th stage */ 557d5697caSHong Zhang ext->shift = 1. / h; 569566063dSJacob Faibussowitsch PetscCall(SNESSetLagJacobian(snes, -2)); /* Recompute the Jacobian on this solve, but not again */ 579566063dSJacob Faibussowitsch PetscCall(VecCopy(ext->VecSolPrev, Y)); /* Take the previous solution as initial step */ 587d5697caSHong Zhang 597d5697caSHong Zhang for (i = 0; i < ext->N[istage]; i++) { 607d5697caSHong Zhang ext->ctime = ts->ptime + h * i; 619566063dSJacob Faibussowitsch PetscCall(VecCopy(Y, Z)); /* Save the solution of the previous substep */ 629566063dSJacob Faibussowitsch PetscCall(SNESSolve(snes, NULL, Y)); 639566063dSJacob Faibussowitsch PetscCall(SNESGetIterationNumber(snes, &its)); 649566063dSJacob Faibussowitsch PetscCall(SNESGetLinearSolveIterations(snes, &lits)); 659371c9d4SSatish Balay ts->snes_its += its; 669371c9d4SSatish Balay ts->ksp_its += lits; 679566063dSJacob Faibussowitsch PetscCall(TSGetAdapt(ts, &adapt)); 689566063dSJacob Faibussowitsch PetscCall(TSAdaptCheckStage(adapt, ts, ext->ctime, Y, &accept)); 697d5697caSHong Zhang } 703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 717d5697caSHong Zhang } 727d5697caSHong Zhang 73d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSStep_EIMEX(TS ts) 74d71ae5a4SJacob Faibussowitsch { 757d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 767d5697caSHong Zhang const PetscInt ns = ext->nstages; 777d5697caSHong Zhang Vec *T = ext->T, Y = ext->Y; 787d5697caSHong Zhang SNES snes; 797d5697caSHong Zhang PetscInt i, j; 807d5697caSHong Zhang PetscBool accept = PETSC_FALSE; 817453f775SEmil Constantinescu PetscReal alpha, local_error, local_error_a, local_error_r; 827d5697caSHong Zhang 83d0609cedSBarry Smith PetscFunctionBegin; 849566063dSJacob Faibussowitsch PetscCall(TSGetSNES(ts, &snes)); 859566063dSJacob Faibussowitsch PetscCall(SNESSetType(snes, "ksponly")); 867d5697caSHong Zhang ext->status = TS_STEP_INCOMPLETE; 877d5697caSHong Zhang 889566063dSJacob Faibussowitsch PetscCall(VecCopy(ts->vec_sol, ext->VecSolPrev)); 897d5697caSHong Zhang 907d5697caSHong Zhang /* Apply n_j steps of the base method to obtain solutions of T(j,1),1<=j<=s */ 917d5697caSHong Zhang for (j = 0; j < ns; j++) { 929566063dSJacob Faibussowitsch PetscCall(TSStage_EIMEX(ts, j)); 939566063dSJacob Faibussowitsch PetscCall(VecCopy(Y, T[j])); 947d5697caSHong Zhang } 957d5697caSHong Zhang 967d5697caSHong Zhang for (i = 1; i < ns; i++) { 977d5697caSHong Zhang for (j = i; j < ns; j++) { 987d5697caSHong Zhang alpha = -(PetscReal)ext->N[j] / ext->N[j - i]; 99d0609cedSBarry Smith PetscCall(VecAXPBYPCZ(T[Map(j, i, ns)], alpha, 1.0, 0, T[Map(j, i - 1, ns)], T[Map(j - 1, i - 1, ns)])); /* T[j][i]=alpha*T[j][i-1]+T[j-1][i-1] */ 1007d5697caSHong Zhang alpha = 1.0 / (1.0 + alpha); 1019566063dSJacob Faibussowitsch PetscCall(VecScale(T[Map(j, i, ns)], alpha)); 1027d5697caSHong Zhang } 1037d5697caSHong Zhang } 1047d5697caSHong Zhang 1059566063dSJacob Faibussowitsch PetscCall(TSEvaluateStep(ts, ns, ts->vec_sol, NULL)); /*update ts solution */ 1067d5697caSHong Zhang 1077d5697caSHong Zhang if (ext->ord_adapt && ext->nstages < ext->max_rows) { 1087d5697caSHong Zhang accept = PETSC_FALSE; 1097d5697caSHong Zhang while (!accept && ext->nstages < ext->max_rows) { 1109566063dSJacob Faibussowitsch PetscCall(TSErrorWeightedNorm(ts, ts->vec_sol, T[Map(ext->nstages - 1, ext->nstages - 2, ext->nstages)], ts->adapt->wnormtype, &local_error, &local_error_a, &local_error_r)); 1117d5697caSHong Zhang accept = (local_error < 1.0) ? PETSC_TRUE : PETSC_FALSE; 1127d5697caSHong Zhang 1137d5697caSHong Zhang if (!accept) { /* add one more stage*/ 1149566063dSJacob Faibussowitsch PetscCall(TSStage_EIMEX(ts, ext->nstages)); 1159371c9d4SSatish Balay ext->nstages++; 1169371c9d4SSatish Balay ext->row_ind++; 1179371c9d4SSatish Balay ext->col_ind++; 1187d5697caSHong Zhang /*T table need to be recycled*/ 1199566063dSJacob Faibussowitsch PetscCall(VecDuplicateVecs(ts->vec_sol, (1 + ext->nstages) * ext->nstages / 2, &ext->T)); 1207d5697caSHong Zhang for (i = 0; i < ext->nstages - 1; i++) { 12148a46eb9SPierre Jolivet for (j = 0; j <= i; j++) PetscCall(VecCopy(T[Map(i, j, ext->nstages - 1)], ext->T[Map(i, j, ext->nstages)])); 1227d5697caSHong Zhang } 1239566063dSJacob Faibussowitsch PetscCall(VecDestroyVecs(ext->nstages * (ext->nstages - 1) / 2, &T)); 1247d5697caSHong Zhang T = ext->T; /*reset the pointer*/ 1257d5697caSHong Zhang /*recycling finished, store the new solution*/ 1269566063dSJacob Faibussowitsch PetscCall(VecCopy(Y, T[ext->nstages - 1])); 1277d5697caSHong Zhang /*extrapolation for the newly added stage*/ 1287d5697caSHong Zhang for (i = 1; i < ext->nstages; i++) { 1297d5697caSHong Zhang alpha = -(PetscReal)ext->N[ext->nstages - 1] / ext->N[ext->nstages - 1 - i]; 130d0609cedSBarry Smith PetscCall(VecAXPBYPCZ(T[Map(ext->nstages - 1, i, ext->nstages)], alpha, 1.0, 0, T[Map(ext->nstages - 1, i - 1, ext->nstages)], T[Map(ext->nstages - 1 - 1, i - 1, ext->nstages)])); /*T[ext->nstages-1][i]=alpha*T[ext->nstages-1][i-1]+T[ext->nstages-1-1][i-1]*/ 1317d5697caSHong Zhang alpha = 1.0 / (1.0 + alpha); 1329566063dSJacob Faibussowitsch PetscCall(VecScale(T[Map(ext->nstages - 1, i, ext->nstages)], alpha)); 1337d5697caSHong Zhang } 1347d5697caSHong Zhang /*update ts solution */ 1359566063dSJacob Faibussowitsch PetscCall(TSEvaluateStep(ts, ext->nstages, ts->vec_sol, NULL)); 1367d5697caSHong Zhang } /*end if !accept*/ 1377d5697caSHong Zhang } /*end while*/ 1387d5697caSHong Zhang 13948a46eb9SPierre Jolivet if (ext->nstages == ext->max_rows) PetscCall(PetscInfo(ts, "Max number of rows has been used\n")); 1407d5697caSHong Zhang } /*end if ext->ord_adapt*/ 1417d5697caSHong Zhang ts->ptime += ts->time_step; 1427d5697caSHong Zhang ext->status = TS_STEP_COMPLETE; 1437d5697caSHong Zhang 1447d5697caSHong Zhang if (ext->status != TS_STEP_COMPLETE && !ts->reason) ts->reason = TS_DIVERGED_STEP_REJECTED; 1453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1467d5697caSHong Zhang } 1477d5697caSHong Zhang 1487d5697caSHong Zhang /* cubic Hermit spline */ 149d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSInterpolate_EIMEX(TS ts, PetscReal itime, Vec X) 150d71ae5a4SJacob Faibussowitsch { 1517d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 1527d5697caSHong Zhang PetscReal t, a, b; 153be5899b3SLisandro Dalcin Vec Y0 = ext->VecSolPrev, Y1 = ext->Y, Ydot = ext->Ydot, YdotI = ext->YdotI; 154be5899b3SLisandro Dalcin const PetscReal h = ts->ptime - ts->ptime_prev; 155*4d86920dSPierre Jolivet 1567d5697caSHong Zhang PetscFunctionBegin; 1577d5697caSHong Zhang t = (itime - ts->ptime + h) / h; 1587d5697caSHong Zhang /* YdotI = -f(x)-g(x) */ 1597d5697caSHong Zhang 1609566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(Ydot)); 1619566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts, ts->ptime - h, Y0, Ydot, YdotI, PETSC_FALSE)); 1627d5697caSHong Zhang 16316dc5bacSEmil Constantinescu a = 2.0 * t * t * t - 3.0 * t * t + 1.0; 16416dc5bacSEmil Constantinescu b = -(t * t * t - 2.0 * t * t + t) * h; 1659566063dSJacob Faibussowitsch PetscCall(VecAXPBYPCZ(X, a, b, 0.0, Y0, YdotI)); 1667d5697caSHong Zhang 1679566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts, ts->ptime, Y1, Ydot, YdotI, PETSC_FALSE)); 16816dc5bacSEmil Constantinescu a = -2.0 * t * t * t + 3.0 * t * t; 16916dc5bacSEmil Constantinescu b = -(t * t * t - t * t) * h; 1709566063dSJacob Faibussowitsch PetscCall(VecAXPBYPCZ(X, a, b, 1.0, Y1, YdotI)); 1713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1727d5697caSHong Zhang } 1737d5697caSHong Zhang 174d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSReset_EIMEX(TS ts) 175d71ae5a4SJacob Faibussowitsch { 1767d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 1777d5697caSHong Zhang PetscInt ns; 1787d5697caSHong Zhang 1797d5697caSHong Zhang PetscFunctionBegin; 1807d5697caSHong Zhang ns = ext->nstages; 1819566063dSJacob Faibussowitsch PetscCall(VecDestroyVecs((1 + ns) * ns / 2, &ext->T)); 1829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Y)); 1839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Z)); 1849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->YdotRHS)); 1859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->YdotI)); 1869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Ydot)); 1879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->VecSolPrev)); 1889566063dSJacob Faibussowitsch PetscCall(PetscFree(ext->N)); 1893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1907d5697caSHong Zhang } 1917d5697caSHong Zhang 192d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSDestroy_EIMEX(TS ts) 193d71ae5a4SJacob Faibussowitsch { 1947d5697caSHong Zhang PetscFunctionBegin; 1959566063dSJacob Faibussowitsch PetscCall(TSReset_EIMEX(ts)); 1969566063dSJacob Faibussowitsch PetscCall(PetscFree(ts->data)); 1979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetMaxRows_C", NULL)); 1989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetRowCol_C", NULL)); 1999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetOrdAdapt_C", NULL)); 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2017d5697caSHong Zhang } 2027d5697caSHong Zhang 203d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXGetVecs(TS ts, DM dm, Vec *Z, Vec *Ydot, Vec *YdotI, Vec *YdotRHS) 204d71ae5a4SJacob Faibussowitsch { 2057d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 2067d5697caSHong Zhang 2077d5697caSHong Zhang PetscFunctionBegin; 2087d5697caSHong Zhang if (Z) { 2097d5697caSHong Zhang if (dm && dm != ts->dm) { 2109566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_Z", Z)); 2117d5697caSHong Zhang } else *Z = ext->Z; 2127d5697caSHong Zhang } 2137d5697caSHong Zhang if (Ydot) { 2147d5697caSHong Zhang if (dm && dm != ts->dm) { 2159566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_Ydot", Ydot)); 2167d5697caSHong Zhang } else *Ydot = ext->Ydot; 2177d5697caSHong Zhang } 2187d5697caSHong Zhang if (YdotI) { 2197d5697caSHong Zhang if (dm && dm != ts->dm) { 2209566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_YdotI", YdotI)); 2217d5697caSHong Zhang } else *YdotI = ext->YdotI; 2227d5697caSHong Zhang } 2237d5697caSHong Zhang if (YdotRHS) { 2247d5697caSHong Zhang if (dm && dm != ts->dm) { 2259566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_YdotRHS", YdotRHS)); 2267d5697caSHong Zhang } else *YdotRHS = ext->YdotRHS; 2277d5697caSHong Zhang } 2283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2297d5697caSHong Zhang } 2307d5697caSHong Zhang 231d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXRestoreVecs(TS ts, DM dm, Vec *Z, Vec *Ydot, Vec *YdotI, Vec *YdotRHS) 232d71ae5a4SJacob Faibussowitsch { 2337d5697caSHong Zhang PetscFunctionBegin; 2347d5697caSHong Zhang if (Z) { 23548a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_Z", Z)); 2367d5697caSHong Zhang } 2377d5697caSHong Zhang if (Ydot) { 23848a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_Ydot", Ydot)); 2397d5697caSHong Zhang } 2407d5697caSHong Zhang if (YdotI) { 24148a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_YdotI", YdotI)); 2427d5697caSHong Zhang } 2437d5697caSHong Zhang if (YdotRHS) { 24448a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_YdotRHS", YdotRHS)); 2457d5697caSHong Zhang } 2463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2477d5697caSHong Zhang } 2487d5697caSHong Zhang 2497d5697caSHong Zhang /* 2507d5697caSHong Zhang This defines the nonlinear equation that is to be solved with SNES 2517d5697caSHong Zhang Fn[t0+Theta*dt, U, (U-U0)*shift] = 0 2527d5697caSHong Zhang In the case of Backward Euler, Fn = (U-U0)/h-g(t1,U)) 2537d5697caSHong Zhang Since FormIFunction calculates G = ydot - g(t,y), ydot will be set to (U-U0)/h 2547d5697caSHong Zhang */ 255d71ae5a4SJacob Faibussowitsch static PetscErrorCode SNESTSFormFunction_EIMEX(SNES snes, Vec X, Vec G, TS ts) 256d71ae5a4SJacob Faibussowitsch { 2577d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 2587d5697caSHong Zhang Vec Ydot, Z; 2597d5697caSHong Zhang DM dm, dmsave; 2607d5697caSHong Zhang 2617d5697caSHong Zhang PetscFunctionBegin; 2629566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(G)); 2637d5697caSHong Zhang 2649566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 2659566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, dm, &Z, &Ydot, NULL, NULL)); 2669566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(Ydot)); 2677d5697caSHong Zhang dmsave = ts->dm; 2687d5697caSHong Zhang ts->dm = dm; 2699566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts, ext->ctime, X, Ydot, G, PETSC_FALSE)); 2707d5697caSHong Zhang /* PETSC_FALSE indicates non-imex, adding explicit RHS to the implicit I function. */ 2719566063dSJacob Faibussowitsch PetscCall(VecCopy(G, Ydot)); 2727d5697caSHong Zhang ts->dm = dmsave; 2739566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, dm, &Z, &Ydot, NULL, NULL)); 2743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2757d5697caSHong Zhang } 2767d5697caSHong Zhang 2777d5697caSHong Zhang /* 2787d5697caSHong Zhang This defined the Jacobian matrix for SNES. Jn = (I/h-g'(t,y)) 2797d5697caSHong Zhang */ 280d71ae5a4SJacob Faibussowitsch static PetscErrorCode SNESTSFormJacobian_EIMEX(SNES snes, Vec X, Mat A, Mat B, TS ts) 281d71ae5a4SJacob Faibussowitsch { 2827d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 2837d5697caSHong Zhang Vec Ydot; 2847d5697caSHong Zhang DM dm, dmsave; 285*4d86920dSPierre Jolivet 2867d5697caSHong Zhang PetscFunctionBegin; 2879566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 2889566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, dm, NULL, &Ydot, NULL, NULL)); 2899566063dSJacob Faibussowitsch /* PetscCall(VecZeroEntries(Ydot)); */ 2907d5697caSHong Zhang /* ext->Ydot have already been computed in SNESTSFormFunction_EIMEX (SNES guarantees this) */ 2917d5697caSHong Zhang dmsave = ts->dm; 2927d5697caSHong Zhang ts->dm = dm; 2939566063dSJacob Faibussowitsch PetscCall(TSComputeIJacobian(ts, ts->ptime, X, Ydot, ext->shift, A, B, PETSC_TRUE)); 2947d5697caSHong Zhang ts->dm = dmsave; 2959566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, dm, NULL, &Ydot, NULL, NULL)); 2963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2977d5697caSHong Zhang } 2987d5697caSHong Zhang 299d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCoarsenHook_TSEIMEX(DM fine, DM coarse, void *ctx) 300d71ae5a4SJacob Faibussowitsch { 3017d5697caSHong Zhang PetscFunctionBegin; 3023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3037d5697caSHong Zhang } 3047d5697caSHong Zhang 305d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMRestrictHook_TSEIMEX(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse, void *ctx) 306d71ae5a4SJacob Faibussowitsch { 3077d5697caSHong Zhang TS ts = (TS)ctx; 3087d5697caSHong Zhang Vec Z, Z_c; 3097d5697caSHong Zhang 3107d5697caSHong Zhang PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, fine, &Z, NULL, NULL, NULL)); 3129566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, coarse, &Z_c, NULL, NULL, NULL)); 3139566063dSJacob Faibussowitsch PetscCall(MatRestrict(restrct, Z, Z_c)); 3149566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(Z_c, rscale, Z_c)); 3159566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, fine, &Z, NULL, NULL, NULL)); 3169566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, coarse, &Z_c, NULL, NULL, NULL)); 3173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3187d5697caSHong Zhang } 3197d5697caSHong Zhang 320d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSSetUp_EIMEX(TS ts) 321d71ae5a4SJacob Faibussowitsch { 3227d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 3237d5697caSHong Zhang DM dm; 3247d5697caSHong Zhang 325955c1f14SBarry Smith PetscFunctionBegin; 3267d5697caSHong Zhang if (!ext->N) { /* ext->max_rows not set */ 3279566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetMaxRows(ts, TSEIMEXDefault)); 3287d5697caSHong Zhang } 3297d5697caSHong Zhang if (-1 == ext->row_ind && -1 == ext->col_ind) { 3309566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetRowCol(ts, ext->max_rows, ext->max_rows)); 3317d5697caSHong Zhang } else { /* ext->row_ind and col_ind already set */ 33248a46eb9SPierre Jolivet if (ext->ord_adapt) PetscCall(PetscInfo(ts, "Order adaptivity is enabled and TSEIMEXSetRowCol or -ts_eimex_row_col option will take no effect\n")); 3337d5697caSHong Zhang } 3347d5697caSHong Zhang 3357d5697caSHong Zhang if (ext->ord_adapt) { 3367d5697caSHong Zhang ext->nstages = 2; /* Start with the 2-stage scheme */ 3379566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetRowCol(ts, ext->nstages, ext->nstages)); 3387d5697caSHong Zhang } else { 3397d5697caSHong Zhang ext->nstages = ext->max_rows; /* by default nstages is the same as max_rows, this can be changed by setting order adaptivity */ 3407d5697caSHong Zhang } 3417d5697caSHong Zhang 3429566063dSJacob Faibussowitsch PetscCall(TSGetAdapt(ts, &ts->adapt)); 3432ffb9264SLisandro Dalcin 3449566063dSJacob Faibussowitsch PetscCall(VecDuplicateVecs(ts->vec_sol, (1 + ext->nstages) * ext->nstages / 2, &ext->T)); /* full T table */ 3459566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->YdotI)); 3469566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->YdotRHS)); 3479566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->Ydot)); 3489566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->VecSolPrev)); 3499566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->Y)); 3509566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->Z)); 3519566063dSJacob Faibussowitsch PetscCall(TSGetDM(ts, &dm)); 3521baa6e33SBarry Smith if (dm) PetscCall(DMCoarsenHookAdd(dm, DMCoarsenHook_TSEIMEX, DMRestrictHook_TSEIMEX, ts)); 3533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3547d5697caSHong Zhang } 3557d5697caSHong Zhang 356d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSSetFromOptions_EIMEX(TS ts, PetscOptionItems *PetscOptionsObject) 357d71ae5a4SJacob Faibussowitsch { 3587d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 3599200755eSBarry Smith PetscInt tindex[2]; 3607d5697caSHong Zhang PetscInt np = 2, nrows = TSEIMEXDefault; 3619200755eSBarry Smith 3627d5697caSHong Zhang PetscFunctionBegin; 3639200755eSBarry Smith tindex[0] = TSEIMEXDefault; 3649200755eSBarry Smith tindex[1] = TSEIMEXDefault; 365d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "EIMEX ODE solver options"); 3667d5697caSHong Zhang { 3677d5697caSHong Zhang PetscBool flg; 3689566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-ts_eimex_max_rows", "Define the maximum number of rows used", "TSEIMEXSetMaxRows", nrows, &nrows, &flg)); /* default value 3 */ 3691baa6e33SBarry Smith if (flg) PetscCall(TSEIMEXSetMaxRows(ts, nrows)); 3709566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-ts_eimex_row_col", "Return the specific term in the T table", "TSEIMEXSetRowCol", tindex, &np, &flg)); 37148a46eb9SPierre Jolivet if (flg) PetscCall(TSEIMEXSetRowCol(ts, tindex[0], tindex[1])); 3729566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-ts_eimex_order_adapt", "Solve the problem with adaptive order", "TSEIMEXSetOrdAdapt", ext->ord_adapt, &ext->ord_adapt, NULL)); 3737d5697caSHong Zhang } 374d0609cedSBarry Smith PetscOptionsHeadEnd(); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3767d5697caSHong Zhang } 3777d5697caSHong Zhang 378d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSView_EIMEX(TS ts, PetscViewer viewer) 379d71ae5a4SJacob Faibussowitsch { 3807d5697caSHong Zhang PetscFunctionBegin; 3813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3827d5697caSHong Zhang } 3837d5697caSHong Zhang 3847d5697caSHong Zhang /*@C 385bcf0153eSBarry Smith TSEIMEXSetMaxRows - Set the maximum number of rows for `TSEIMEX` schemes 3867d5697caSHong Zhang 38720f4b53cSBarry Smith Logically Collective 3887d5697caSHong Zhang 389d8d19677SJose E. Roman Input Parameters: 3907d5697caSHong Zhang + ts - timestepping context 3917d5697caSHong Zhang - nrows - maximum number of rows 3927d5697caSHong Zhang 3937d5697caSHong Zhang Level: intermediate 3947d5697caSHong Zhang 3951cc06b55SBarry Smith .seealso: [](ch_ts), `TSEIMEXSetRowCol()`, `TSEIMEXSetOrdAdapt()`, `TSEIMEX` 3967d5697caSHong Zhang @*/ 397d71ae5a4SJacob Faibussowitsch PetscErrorCode TSEIMEXSetMaxRows(TS ts, PetscInt nrows) 398d71ae5a4SJacob Faibussowitsch { 3997d5697caSHong Zhang PetscFunctionBegin; 4007d5697caSHong Zhang PetscValidHeaderSpecific(ts, TS_CLASSID, 1); 401cac4c232SBarry Smith PetscTryMethod(ts, "TSEIMEXSetMaxRows_C", (TS, PetscInt), (ts, nrows)); 4023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4037d5697caSHong Zhang } 4047d5697caSHong Zhang 4057d5697caSHong Zhang /*@C 4062fe279fdSBarry Smith TSEIMEXSetRowCol - Set the number of rows and the number of columns for the tableau that represents the T solution in the `TSEIMEX` scheme 4077d5697caSHong Zhang 40820f4b53cSBarry Smith Logically Collective 4097d5697caSHong Zhang 410d8d19677SJose E. Roman Input Parameters: 4117d5697caSHong Zhang + ts - timestepping context 4122fe279fdSBarry Smith . row - the row 4132fe279fdSBarry Smith - col - the column 4147d5697caSHong Zhang 4157d5697caSHong Zhang Level: intermediate 4167d5697caSHong Zhang 4171cc06b55SBarry Smith .seealso: [](ch_ts), `TSEIMEXSetMaxRows()`, `TSEIMEXSetOrdAdapt()`, `TSEIMEX` 4187d5697caSHong Zhang @*/ 419d71ae5a4SJacob Faibussowitsch PetscErrorCode TSEIMEXSetRowCol(TS ts, PetscInt row, PetscInt col) 420d71ae5a4SJacob Faibussowitsch { 4217d5697caSHong Zhang PetscFunctionBegin; 4227d5697caSHong Zhang PetscValidHeaderSpecific(ts, TS_CLASSID, 1); 423cac4c232SBarry Smith PetscTryMethod(ts, "TSEIMEXSetRowCol_C", (TS, PetscInt, PetscInt), (ts, row, col)); 4243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4257d5697caSHong Zhang } 4267d5697caSHong Zhang 4277d5697caSHong Zhang /*@C 428bcf0153eSBarry Smith TSEIMEXSetOrdAdapt - Set the order adaptativity for the `TSEIMEX` schemes 4297d5697caSHong Zhang 43020f4b53cSBarry Smith Logically Collective 4317d5697caSHong Zhang 432d8d19677SJose E. Roman Input Parameters: 4337d5697caSHong Zhang + ts - timestepping context 434b43aa488SJacob Faibussowitsch - flg - index in the T table 4357d5697caSHong Zhang 4367d5697caSHong Zhang Level: intermediate 4377d5697caSHong Zhang 43842747ad1SJacob Faibussowitsch .seealso: [](ch_ts), `TSEIMEXSetRowCol()`, `TSEIMEX` 4397d5697caSHong Zhang @*/ 440d71ae5a4SJacob Faibussowitsch PetscErrorCode TSEIMEXSetOrdAdapt(TS ts, PetscBool flg) 441d71ae5a4SJacob Faibussowitsch { 4427d5697caSHong Zhang PetscFunctionBegin; 4437d5697caSHong Zhang PetscValidHeaderSpecific(ts, TS_CLASSID, 1); 444cac4c232SBarry Smith PetscTryMethod(ts, "TSEIMEXSetOrdAdapt_C", (TS, PetscBool), (ts, flg)); 4453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4467d5697caSHong Zhang } 4477d5697caSHong Zhang 448d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXSetMaxRows_EIMEX(TS ts, PetscInt nrows) 449d71ae5a4SJacob Faibussowitsch { 4507d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 4517d5697caSHong Zhang PetscInt i; 4527d5697caSHong Zhang 4537d5697caSHong Zhang PetscFunctionBegin; 45463a3b9bcSJacob Faibussowitsch PetscCheck(nrows >= 0 && nrows <= 100, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "Max number of rows (current value %" PetscInt_FMT ") should be an integer number between 1 and 100", nrows); 4559566063dSJacob Faibussowitsch PetscCall(PetscFree(ext->N)); 4567d5697caSHong Zhang ext->max_rows = nrows; 4579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrows, &ext->N)); 4587d5697caSHong Zhang for (i = 0; i < nrows; i++) ext->N[i] = i + 1; 4593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4607d5697caSHong Zhang } 4617d5697caSHong Zhang 462d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXSetRowCol_EIMEX(TS ts, PetscInt row, PetscInt col) 463d71ae5a4SJacob Faibussowitsch { 4647d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 4657d5697caSHong Zhang 4667d5697caSHong Zhang PetscFunctionBegin; 46763a3b9bcSJacob Faibussowitsch PetscCheck(row >= 1 && col >= 1, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "The row or column index (current value %" PetscInt_FMT ",%" PetscInt_FMT ") should not be less than 1 ", row, col); 4689371c9d4SSatish Balay PetscCheck(row <= ext->max_rows && col <= ext->max_rows, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "The row or column index (current value %" PetscInt_FMT ",%" PetscInt_FMT ") exceeds the maximum number of rows %" PetscInt_FMT, row, col, 4699371c9d4SSatish Balay ext->max_rows); 47063a3b9bcSJacob Faibussowitsch PetscCheck(col <= row, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "The column index (%" PetscInt_FMT ") exceeds the row index (%" PetscInt_FMT ")", col, row); 4717d5697caSHong Zhang 4727d5697caSHong Zhang ext->row_ind = row - 1; 4737d5697caSHong Zhang ext->col_ind = col - 1; /* Array index in C starts from 0 */ 4743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4757d5697caSHong Zhang } 4767d5697caSHong Zhang 477d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXSetOrdAdapt_EIMEX(TS ts, PetscBool flg) 478d71ae5a4SJacob Faibussowitsch { 4797d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data; 480*4d86920dSPierre Jolivet 4817d5697caSHong Zhang PetscFunctionBegin; 4827d5697caSHong Zhang ext->ord_adapt = flg; 4833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4847d5697caSHong Zhang } 4857d5697caSHong Zhang 4867d5697caSHong Zhang /*MC 4871d27aa22SBarry Smith TSEIMEX - Time stepping with Extrapolated IMEX methods {cite}`constantinescu_a2010a`. 488679f3ef1SBarry Smith 489679f3ef1SBarry Smith These methods are intended for problems with well-separated time scales, especially when a slow scale is strongly nonlinear such that it 490bcf0153eSBarry Smith is expensive to solve with a fully implicit method. The user should provide the stiff part of the equation using `TSSetIFunction()` and the 491bcf0153eSBarry Smith non-stiff part with `TSSetRHSFunction()`. 492bcf0153eSBarry Smith 493bcf0153eSBarry Smith Level: beginner 4947d5697caSHong Zhang 4957d5697caSHong Zhang Notes: 496bcf0153eSBarry Smith The default is a 3-stage scheme, it can be changed with `TSEIMEXSetMaxRows()` or -ts_eimex_max_rows 4977d5697caSHong Zhang 4981d27aa22SBarry Smith This method currently only works with ODE, for which the stiff part $ G(t,X,Xdot) $ has the form $ Xdot + Ghat(t,X)$. 4997d5697caSHong Zhang 500679f3ef1SBarry Smith The general system is written as 501679f3ef1SBarry Smith 5021d27aa22SBarry Smith $$ 503679f3ef1SBarry Smith G(t,X,Xdot) = F(t,X) 5041d27aa22SBarry Smith $$ 505679f3ef1SBarry Smith 506679f3ef1SBarry Smith where G represents the stiff part and F represents the non-stiff part. The user should provide the stiff part 507bcf0153eSBarry Smith of the equation using TSSetIFunction() and the non-stiff part with `TSSetRHSFunction()`. 508679f3ef1SBarry Smith This method is designed to be linearly implicit on G and can use an approximate and lagged Jacobian. 509679f3ef1SBarry Smith 510679f3ef1SBarry Smith Another common form for the system is 511679f3ef1SBarry Smith 5121d27aa22SBarry Smith $$ 513679f3ef1SBarry Smith y'=f(x)+g(x) 5141d27aa22SBarry Smith $$ 515679f3ef1SBarry Smith 516679f3ef1SBarry Smith The relationship between F,G and f,g is 517679f3ef1SBarry Smith 5181d27aa22SBarry Smith $$ 519679f3ef1SBarry Smith G = y'-g(x), F = f(x) 5201d27aa22SBarry Smith $$ 521679f3ef1SBarry Smith 5221cc06b55SBarry Smith .seealso: [](ch_ts), `TSCreate()`, `TS`, `TSSetType()`, `TSEIMEXSetMaxRows()`, `TSEIMEXSetRowCol()`, `TSEIMEXSetOrdAdapt()`, `TSType` 5237d5697caSHong Zhang M*/ 524d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode TSCreate_EIMEX(TS ts) 525d71ae5a4SJacob Faibussowitsch { 5267d5697caSHong Zhang TS_EIMEX *ext; 5277d5697caSHong Zhang 5287d5697caSHong Zhang PetscFunctionBegin; 5297d5697caSHong Zhang ts->ops->reset = TSReset_EIMEX; 5307d5697caSHong Zhang ts->ops->destroy = TSDestroy_EIMEX; 5317d5697caSHong Zhang ts->ops->view = TSView_EIMEX; 5327d5697caSHong Zhang ts->ops->setup = TSSetUp_EIMEX; 5337d5697caSHong Zhang ts->ops->step = TSStep_EIMEX; 5347d5697caSHong Zhang ts->ops->interpolate = TSInterpolate_EIMEX; 5357d5697caSHong Zhang ts->ops->evaluatestep = TSEvaluateStep_EIMEX; 5367d5697caSHong Zhang ts->ops->setfromoptions = TSSetFromOptions_EIMEX; 5377d5697caSHong Zhang ts->ops->snesfunction = SNESTSFormFunction_EIMEX; 5387d5697caSHong Zhang ts->ops->snesjacobian = SNESTSFormJacobian_EIMEX; 5392ffb9264SLisandro Dalcin ts->default_adapt_type = TSADAPTNONE; 5407d5697caSHong Zhang 541efd4aadfSBarry Smith ts->usessnes = PETSC_TRUE; 542efd4aadfSBarry Smith 5434dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&ext)); 5447d5697caSHong Zhang ts->data = (void *)ext; 5457d5697caSHong Zhang 5467d5697caSHong Zhang ext->ord_adapt = PETSC_FALSE; /* By default, no order adapativity */ 5477d5697caSHong Zhang ext->row_ind = -1; 5487d5697caSHong Zhang ext->col_ind = -1; 5497d5697caSHong Zhang ext->max_rows = TSEIMEXDefault; 5507d5697caSHong Zhang ext->nstages = TSEIMEXDefault; 5517d5697caSHong Zhang 5529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetMaxRows_C", TSEIMEXSetMaxRows_EIMEX)); 5539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetRowCol_C", TSEIMEXSetRowCol_EIMEX)); 5549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetOrdAdapt_C", TSEIMEXSetOrdAdapt_EIMEX)); 5553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5567d5697caSHong Zhang } 557