xref: /petsc/src/ts/impls/eimex/eimex.c (revision cac4c232dc4f93991e342196e27ef7b0655dac7b)
17d5697caSHong Zhang 
2af0996ceSBarry Smith #include <petsc/private/tsimpl.h>                /*I   "petscts.h"   I*/
34042b796SJed Brown #include <petscdm.h>
47d5697caSHong Zhang 
57d5697caSHong Zhang static const PetscInt TSEIMEXDefault = 3;
67d5697caSHong Zhang 
77d5697caSHong Zhang typedef struct {
87d5697caSHong Zhang   PetscInt     row_ind;         /* Return the term T[row_ind][col_ind] */
97d5697caSHong Zhang   PetscInt     col_ind;         /* Return the term T[row_ind][col_ind] */
107d5697caSHong Zhang   PetscInt     nstages;         /* Numbers of stages in current scheme */
117d5697caSHong Zhang   PetscInt     max_rows;        /* Maximum number of rows */
127d5697caSHong Zhang   PetscInt     *N;              /* Harmonic sequence N[max_rows] */
137d5697caSHong Zhang   Vec          Y;               /* States computed during the step, used to complete the step */
147d5697caSHong Zhang   Vec          Z;               /* For shift*(Y-Z) */
157d5697caSHong Zhang   Vec          *T;              /* Working table, size determined by nstages */
167d5697caSHong Zhang   Vec          YdotRHS;         /* f(x) Work vector holding YdotRHS during residual evaluation */
177d5697caSHong Zhang   Vec          YdotI;           /* xdot-g(x) Work vector holding YdotI = G(t,x,xdot) when xdot =0 */
187d5697caSHong Zhang   Vec          Ydot;            /* f(x)+g(x) Work vector */
197d5697caSHong Zhang   Vec          VecSolPrev;      /* Work vector holding the solution from the previous step (used for interpolation) */
207d5697caSHong Zhang   PetscReal    shift;
217d5697caSHong Zhang   PetscReal    ctime;
227d5697caSHong Zhang   PetscBool    recompute_jacobian; /* Recompute the Jacobian at each stage, default is to freeze the Jacobian at the start of each step */
237d5697caSHong Zhang   PetscBool    ord_adapt;       /* order adapativity */
247d5697caSHong Zhang   TSStepStatus status;
257d5697caSHong Zhang } TS_EIMEX;
267d5697caSHong Zhang 
277d5697caSHong Zhang /* This function is pure */
287d5697caSHong Zhang static PetscInt Map(PetscInt i, PetscInt j, PetscInt s)
297d5697caSHong Zhang {
307d5697caSHong Zhang   return ((2*s-j+1)*j/2+i-j);
317d5697caSHong Zhang }
327d5697caSHong Zhang 
337d5697caSHong Zhang static PetscErrorCode TSEvaluateStep_EIMEX(TS ts,PetscInt order,Vec X,PetscBool *done)
347d5697caSHong Zhang {
357d5697caSHong Zhang   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
367d5697caSHong Zhang   const PetscInt  ns = ext->nstages;
377d5697caSHong Zhang   PetscFunctionBegin;
389566063dSJacob Faibussowitsch   PetscCall(VecCopy(ext->T[Map(ext->row_ind,ext->col_ind,ns)],X));
397d5697caSHong Zhang   PetscFunctionReturn(0);
407d5697caSHong Zhang }
417d5697caSHong Zhang 
427d5697caSHong Zhang static PetscErrorCode TSStage_EIMEX(TS ts,PetscInt istage)
437d5697caSHong Zhang {
447d5697caSHong Zhang   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
457d5697caSHong Zhang   PetscReal       h;
467d5697caSHong Zhang   Vec             Y=ext->Y, Z=ext->Z;
477d5697caSHong Zhang   SNES            snes;
487d5697caSHong Zhang   TSAdapt         adapt;
497d5697caSHong Zhang   PetscInt        i,its,lits;
507d5697caSHong Zhang   PetscBool       accept;
517d5697caSHong Zhang 
527d5697caSHong Zhang   PetscFunctionBegin;
539566063dSJacob Faibussowitsch   PetscCall(TSGetSNES(ts,&snes));
547d5697caSHong Zhang   h = ts->time_step/ext->N[istage];/* step size for the istage-th stage */
557d5697caSHong Zhang   ext->shift = 1./h;
569566063dSJacob Faibussowitsch   PetscCall(SNESSetLagJacobian(snes,-2)); /* Recompute the Jacobian on this solve, but not again */
579566063dSJacob Faibussowitsch   PetscCall(VecCopy(ext->VecSolPrev,Y)); /* Take the previous solution as initial step */
587d5697caSHong Zhang 
597d5697caSHong Zhang   for (i=0; i<ext->N[istage]; i++) {
607d5697caSHong Zhang     ext->ctime = ts->ptime + h*i;
619566063dSJacob Faibussowitsch     PetscCall(VecCopy(Y,Z));/* Save the solution of the previous substep */
629566063dSJacob Faibussowitsch     PetscCall(SNESSolve(snes,NULL,Y));
639566063dSJacob Faibussowitsch     PetscCall(SNESGetIterationNumber(snes,&its));
649566063dSJacob Faibussowitsch     PetscCall(SNESGetLinearSolveIterations(snes,&lits));
657d5697caSHong Zhang     ts->snes_its += its; ts->ksp_its += lits;
669566063dSJacob Faibussowitsch     PetscCall(TSGetAdapt(ts,&adapt));
679566063dSJacob Faibussowitsch     PetscCall(TSAdaptCheckStage(adapt,ts,ext->ctime,Y,&accept));
687d5697caSHong Zhang   }
697d5697caSHong Zhang   PetscFunctionReturn(0);
707d5697caSHong Zhang }
717d5697caSHong Zhang 
727d5697caSHong Zhang static PetscErrorCode TSStep_EIMEX(TS ts)
737d5697caSHong Zhang {
747d5697caSHong Zhang   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
757d5697caSHong Zhang   const PetscInt  ns = ext->nstages;
767d5697caSHong Zhang   Vec             *T=ext->T, Y=ext->Y;
777d5697caSHong Zhang 
787d5697caSHong Zhang   SNES            snes;
797d5697caSHong Zhang   PetscInt        i,j;
807d5697caSHong Zhang   PetscBool       accept = PETSC_FALSE;
817d5697caSHong Zhang   PetscErrorCode  ierr;
827453f775SEmil Constantinescu   PetscReal       alpha,local_error,local_error_a,local_error_r;
837d5697caSHong Zhang   PetscFunctionBegin;
847d5697caSHong Zhang 
859566063dSJacob Faibussowitsch   PetscCall(TSGetSNES(ts,&snes));
869566063dSJacob Faibussowitsch   PetscCall(SNESSetType(snes,"ksponly"));
877d5697caSHong Zhang   ext->status = TS_STEP_INCOMPLETE;
887d5697caSHong Zhang 
899566063dSJacob Faibussowitsch   PetscCall(VecCopy(ts->vec_sol,ext->VecSolPrev));
907d5697caSHong Zhang 
917d5697caSHong Zhang   /* Apply n_j steps of the base method to obtain solutions of T(j,1),1<=j<=s */
927d5697caSHong Zhang   for (j=0; j<ns; j++) {
939566063dSJacob Faibussowitsch         PetscCall(TSStage_EIMEX(ts,j));
949566063dSJacob Faibussowitsch         PetscCall(VecCopy(Y,T[j]));
957d5697caSHong Zhang   }
967d5697caSHong Zhang 
977d5697caSHong Zhang   for (i=1;i<ns;i++) {
987d5697caSHong Zhang     for (j=i;j<ns;j++) {
997d5697caSHong Zhang       alpha = -(PetscReal)ext->N[j]/ext->N[j-i];
1009566063dSJacob Faibussowitsch       ierr  = VecAXPBYPCZ(T[Map(j,i,ns)],alpha,1.0,0,T[Map(j,i-1,ns)],T[Map(j-1,i-1,ns)]);/* T[j][i]=alpha*T[j][i-1]+T[j-1][i-1] */PetscCall(ierr);
1017d5697caSHong Zhang       alpha = 1.0/(1.0 + alpha);
1029566063dSJacob Faibussowitsch       PetscCall(VecScale(T[Map(j,i,ns)],alpha));
1037d5697caSHong Zhang     }
1047d5697caSHong Zhang   }
1057d5697caSHong Zhang 
1069566063dSJacob Faibussowitsch   PetscCall(TSEvaluateStep(ts,ns,ts->vec_sol,NULL));/*update ts solution */
1077d5697caSHong Zhang 
1087d5697caSHong Zhang   if (ext->ord_adapt && ext->nstages < ext->max_rows) {
1097d5697caSHong Zhang         accept = PETSC_FALSE;
1107d5697caSHong Zhang         while (!accept && ext->nstages < ext->max_rows) {
1119566063dSJacob Faibussowitsch           PetscCall(TSErrorWeightedNorm(ts,ts->vec_sol,T[Map(ext->nstages-1,ext->nstages-2,ext->nstages)],ts->adapt->wnormtype,&local_error,&local_error_a,&local_error_r));
1127d5697caSHong Zhang           accept = (local_error < 1.0)? PETSC_TRUE : PETSC_FALSE;
1137d5697caSHong Zhang 
1147d5697caSHong Zhang           if (!accept) {/* add one more stage*/
1159566063dSJacob Faibussowitsch             PetscCall(TSStage_EIMEX(ts,ext->nstages));
1167d5697caSHong Zhang             ext->nstages++; ext->row_ind++; ext->col_ind++;
1177d5697caSHong Zhang             /*T table need to be recycled*/
1189566063dSJacob Faibussowitsch             PetscCall(VecDuplicateVecs(ts->vec_sol,(1+ext->nstages)*ext->nstages/2,&ext->T));
1197d5697caSHong Zhang             for (i=0; i<ext->nstages-1; i++) {
1207d5697caSHong Zhang               for (j=0; j<=i; j++) {
1219566063dSJacob Faibussowitsch                 PetscCall(VecCopy(T[Map(i,j,ext->nstages-1)],ext->T[Map(i,j,ext->nstages)]));
1227d5697caSHong Zhang               }
1237d5697caSHong Zhang             }
1249566063dSJacob Faibussowitsch             PetscCall(VecDestroyVecs(ext->nstages*(ext->nstages-1)/2,&T));
1257d5697caSHong Zhang             T = ext->T; /*reset the pointer*/
1267d5697caSHong Zhang             /*recycling finished, store the new solution*/
1279566063dSJacob Faibussowitsch             PetscCall(VecCopy(Y,T[ext->nstages-1]));
1287d5697caSHong Zhang             /*extrapolation for the newly added stage*/
1297d5697caSHong Zhang             for (i=1;i<ext->nstages;i++) {
1307d5697caSHong Zhang               alpha = -(PetscReal)ext->N[ext->nstages-1]/ext->N[ext->nstages-1-i];
1319566063dSJacob Faibussowitsch               ierr  = VecAXPBYPCZ(T[Map(ext->nstages-1,i,ext->nstages)],alpha,1.0,0,T[Map(ext->nstages-1,i-1,ext->nstages)],T[Map(ext->nstages-1-1,i-1,ext->nstages)]);/*T[ext->nstages-1][i]=alpha*T[ext->nstages-1][i-1]+T[ext->nstages-1-1][i-1]*/PetscCall(ierr);
1327d5697caSHong Zhang               alpha = 1.0/(1.0 + alpha);
1339566063dSJacob Faibussowitsch               PetscCall(VecScale(T[Map(ext->nstages-1,i,ext->nstages)],alpha));
1347d5697caSHong Zhang             }
1357d5697caSHong Zhang             /*update ts solution */
1369566063dSJacob Faibussowitsch             PetscCall(TSEvaluateStep(ts,ext->nstages,ts->vec_sol,NULL));
1377d5697caSHong Zhang           }/*end if !accept*/
1387d5697caSHong Zhang         }/*end while*/
1397d5697caSHong Zhang 
1407d5697caSHong Zhang         if (ext->nstages == ext->max_rows) {
1419566063dSJacob Faibussowitsch           PetscCall(PetscInfo(ts,"Max number of rows has been used\n"));
1427d5697caSHong Zhang         }
1437d5697caSHong Zhang   }/*end if ext->ord_adapt*/
1447d5697caSHong Zhang   ts->ptime += ts->time_step;
1457d5697caSHong Zhang   ext->status = TS_STEP_COMPLETE;
1467d5697caSHong Zhang 
1477d5697caSHong Zhang   if (ext->status != TS_STEP_COMPLETE && !ts->reason) ts->reason = TS_DIVERGED_STEP_REJECTED;
1487d5697caSHong Zhang   PetscFunctionReturn(0);
1497d5697caSHong Zhang }
1507d5697caSHong Zhang 
1517d5697caSHong Zhang /* cubic Hermit spline */
1527d5697caSHong Zhang static PetscErrorCode TSInterpolate_EIMEX(TS ts,PetscReal itime,Vec X)
1537d5697caSHong Zhang {
1547d5697caSHong Zhang   TS_EIMEX       *ext = (TS_EIMEX*)ts->data;
1557d5697caSHong Zhang   PetscReal      t,a,b;
156be5899b3SLisandro Dalcin   Vec            Y0=ext->VecSolPrev,Y1=ext->Y,Ydot=ext->Ydot,YdotI=ext->YdotI;
157be5899b3SLisandro Dalcin   const PetscReal h = ts->ptime - ts->ptime_prev;
1587d5697caSHong Zhang   PetscFunctionBegin;
1597d5697caSHong Zhang   t = (itime -ts->ptime + h)/h;
1607d5697caSHong Zhang   /* YdotI = -f(x)-g(x) */
1617d5697caSHong Zhang 
1629566063dSJacob Faibussowitsch   PetscCall(VecZeroEntries(Ydot));
1639566063dSJacob Faibussowitsch   PetscCall(TSComputeIFunction(ts,ts->ptime-h,Y0,Ydot,YdotI,PETSC_FALSE));
1647d5697caSHong Zhang 
16516dc5bacSEmil Constantinescu   a    = 2.0*t*t*t - 3.0*t*t + 1.0;
16616dc5bacSEmil Constantinescu   b    = -(t*t*t - 2.0*t*t + t)*h;
1679566063dSJacob Faibussowitsch   PetscCall(VecAXPBYPCZ(X,a,b,0.0,Y0,YdotI));
1687d5697caSHong Zhang 
1699566063dSJacob Faibussowitsch   PetscCall(TSComputeIFunction(ts,ts->ptime,Y1,Ydot,YdotI,PETSC_FALSE));
17016dc5bacSEmil Constantinescu   a    = -2.0*t*t*t+3.0*t*t;
17116dc5bacSEmil Constantinescu   b    = -(t*t*t - t*t)*h;
1729566063dSJacob Faibussowitsch   PetscCall(VecAXPBYPCZ(X,a,b,1.0,Y1,YdotI));
1737d5697caSHong Zhang 
1747d5697caSHong Zhang   PetscFunctionReturn(0);
1757d5697caSHong Zhang }
1767d5697caSHong Zhang 
1777d5697caSHong Zhang static PetscErrorCode TSReset_EIMEX(TS ts)
1787d5697caSHong Zhang {
1797d5697caSHong Zhang   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
1807d5697caSHong Zhang   PetscInt        ns;
1817d5697caSHong Zhang 
1827d5697caSHong Zhang   PetscFunctionBegin;
1837d5697caSHong Zhang   ns = ext->nstages;
1849566063dSJacob Faibussowitsch   PetscCall(VecDestroyVecs((1+ns)*ns/2,&ext->T));
1859566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&ext->Y));
1869566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&ext->Z));
1879566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&ext->YdotRHS));
1889566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&ext->YdotI));
1899566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&ext->Ydot));
1909566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&ext->VecSolPrev));
1919566063dSJacob Faibussowitsch   PetscCall(PetscFree(ext->N));
1927d5697caSHong Zhang   PetscFunctionReturn(0);
1937d5697caSHong Zhang }
1947d5697caSHong Zhang 
1957d5697caSHong Zhang static PetscErrorCode TSDestroy_EIMEX(TS ts)
1967d5697caSHong Zhang {
1977d5697caSHong Zhang   PetscFunctionBegin;
1989566063dSJacob Faibussowitsch   PetscCall(TSReset_EIMEX(ts));
1999566063dSJacob Faibussowitsch   PetscCall(PetscFree(ts->data));
2009566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetMaxRows_C",NULL));
2019566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetRowCol_C",NULL));
2029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetOrdAdapt_C",NULL));
2037d5697caSHong Zhang   PetscFunctionReturn(0);
2047d5697caSHong Zhang }
2057d5697caSHong Zhang 
2067d5697caSHong Zhang static PetscErrorCode TSEIMEXGetVecs(TS ts,DM dm,Vec *Z,Vec *Ydot,Vec *YdotI, Vec *YdotRHS)
2077d5697caSHong Zhang {
2087d5697caSHong Zhang   TS_EIMEX       *ext = (TS_EIMEX*)ts->data;
2097d5697caSHong Zhang 
2107d5697caSHong Zhang   PetscFunctionBegin;
2117d5697caSHong Zhang   if (Z) {
2127d5697caSHong Zhang     if (dm && dm != ts->dm) {
2139566063dSJacob Faibussowitsch       PetscCall(DMGetNamedGlobalVector(dm,"TSEIMEX_Z",Z));
2147d5697caSHong Zhang     } else *Z = ext->Z;
2157d5697caSHong Zhang   }
2167d5697caSHong Zhang   if (Ydot) {
2177d5697caSHong Zhang     if (dm && dm != ts->dm) {
2189566063dSJacob Faibussowitsch       PetscCall(DMGetNamedGlobalVector(dm,"TSEIMEX_Ydot",Ydot));
2197d5697caSHong Zhang     } else *Ydot = ext->Ydot;
2207d5697caSHong Zhang   }
2217d5697caSHong Zhang   if (YdotI) {
2227d5697caSHong Zhang     if (dm && dm != ts->dm) {
2239566063dSJacob Faibussowitsch       PetscCall(DMGetNamedGlobalVector(dm,"TSEIMEX_YdotI",YdotI));
2247d5697caSHong Zhang     } else *YdotI = ext->YdotI;
2257d5697caSHong Zhang   }
2267d5697caSHong Zhang   if (YdotRHS) {
2277d5697caSHong Zhang     if (dm && dm != ts->dm) {
2289566063dSJacob Faibussowitsch       PetscCall(DMGetNamedGlobalVector(dm,"TSEIMEX_YdotRHS",YdotRHS));
2297d5697caSHong Zhang     } else *YdotRHS = ext->YdotRHS;
2307d5697caSHong Zhang   }
2317d5697caSHong Zhang   PetscFunctionReturn(0);
2327d5697caSHong Zhang }
2337d5697caSHong Zhang 
2347d5697caSHong Zhang static PetscErrorCode TSEIMEXRestoreVecs(TS ts,DM dm,Vec *Z,Vec *Ydot,Vec *YdotI,Vec *YdotRHS)
2357d5697caSHong Zhang {
2367d5697caSHong Zhang   PetscFunctionBegin;
2377d5697caSHong Zhang   if (Z) {
2387d5697caSHong Zhang     if (dm && dm != ts->dm) {
2399566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedGlobalVector(dm,"TSEIMEX_Z",Z));
2407d5697caSHong Zhang     }
2417d5697caSHong Zhang   }
2427d5697caSHong Zhang   if (Ydot) {
2437d5697caSHong Zhang     if (dm && dm != ts->dm) {
2449566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedGlobalVector(dm,"TSEIMEX_Ydot",Ydot));
2457d5697caSHong Zhang     }
2467d5697caSHong Zhang   }
2477d5697caSHong Zhang   if (YdotI) {
2487d5697caSHong Zhang     if (dm && dm != ts->dm) {
2499566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedGlobalVector(dm,"TSEIMEX_YdotI",YdotI));
2507d5697caSHong Zhang     }
2517d5697caSHong Zhang   }
2527d5697caSHong Zhang   if (YdotRHS) {
2537d5697caSHong Zhang     if (dm && dm != ts->dm) {
2549566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedGlobalVector(dm,"TSEIMEX_YdotRHS",YdotRHS));
2557d5697caSHong Zhang     }
2567d5697caSHong Zhang   }
2577d5697caSHong Zhang   PetscFunctionReturn(0);
2587d5697caSHong Zhang }
2597d5697caSHong Zhang 
2607d5697caSHong Zhang /*
2617d5697caSHong Zhang   This defines the nonlinear equation that is to be solved with SNES
2627d5697caSHong Zhang   Fn[t0+Theta*dt, U, (U-U0)*shift] = 0
2637d5697caSHong Zhang   In the case of Backward Euler, Fn = (U-U0)/h-g(t1,U))
2647d5697caSHong Zhang   Since FormIFunction calculates G = ydot - g(t,y), ydot will be set to (U-U0)/h
2657d5697caSHong Zhang */
2667d5697caSHong Zhang static PetscErrorCode SNESTSFormFunction_EIMEX(SNES snes,Vec X,Vec G,TS ts)
2677d5697caSHong Zhang {
2687d5697caSHong Zhang   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
2697d5697caSHong Zhang   Vec             Ydot,Z;
2707d5697caSHong Zhang   DM              dm,dmsave;
2717d5697caSHong Zhang 
2727d5697caSHong Zhang   PetscFunctionBegin;
2739566063dSJacob Faibussowitsch   PetscCall(VecZeroEntries(G));
2747d5697caSHong Zhang 
2759566063dSJacob Faibussowitsch   PetscCall(SNESGetDM(snes,&dm));
2769566063dSJacob Faibussowitsch   PetscCall(TSEIMEXGetVecs(ts,dm,&Z,&Ydot,NULL,NULL));
2779566063dSJacob Faibussowitsch   PetscCall(VecZeroEntries(Ydot));
2787d5697caSHong Zhang   dmsave = ts->dm;
2797d5697caSHong Zhang   ts->dm = dm;
2809566063dSJacob Faibussowitsch   PetscCall(TSComputeIFunction(ts,ext->ctime,X,Ydot,G,PETSC_FALSE));
2817d5697caSHong Zhang   /* PETSC_FALSE indicates non-imex, adding explicit RHS to the implicit I function.  */
2829566063dSJacob Faibussowitsch   PetscCall(VecCopy(G,Ydot));
2837d5697caSHong Zhang   ts->dm = dmsave;
2849566063dSJacob Faibussowitsch   PetscCall(TSEIMEXRestoreVecs(ts,dm,&Z,&Ydot,NULL,NULL));
2857d5697caSHong Zhang 
2867d5697caSHong Zhang   PetscFunctionReturn(0);
2877d5697caSHong Zhang }
2887d5697caSHong Zhang 
2897d5697caSHong Zhang /*
2907d5697caSHong Zhang  This defined the Jacobian matrix for SNES. Jn = (I/h-g'(t,y))
2917d5697caSHong Zhang  */
292d1e9a80fSBarry Smith static PetscErrorCode SNESTSFormJacobian_EIMEX(SNES snes,Vec X,Mat A,Mat B,TS ts)
2937d5697caSHong Zhang {
2947d5697caSHong Zhang   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
2957d5697caSHong Zhang   Vec             Ydot;
2967d5697caSHong Zhang   DM              dm,dmsave;
2977d5697caSHong Zhang   PetscFunctionBegin;
2989566063dSJacob Faibussowitsch   PetscCall(SNESGetDM(snes,&dm));
2999566063dSJacob Faibussowitsch   PetscCall(TSEIMEXGetVecs(ts,dm,NULL,&Ydot,NULL,NULL));
3009566063dSJacob Faibussowitsch   /*  PetscCall(VecZeroEntries(Ydot)); */
3017d5697caSHong Zhang   /* ext->Ydot have already been computed in SNESTSFormFunction_EIMEX (SNES guarantees this) */
3027d5697caSHong Zhang   dmsave = ts->dm;
3037d5697caSHong Zhang   ts->dm = dm;
3049566063dSJacob Faibussowitsch   PetscCall(TSComputeIJacobian(ts,ts->ptime,X,Ydot,ext->shift,A,B,PETSC_TRUE));
3057d5697caSHong Zhang   ts->dm = dmsave;
3069566063dSJacob Faibussowitsch   PetscCall(TSEIMEXRestoreVecs(ts,dm,NULL,&Ydot,NULL,NULL));
3077d5697caSHong Zhang   PetscFunctionReturn(0);
3087d5697caSHong Zhang }
3097d5697caSHong Zhang 
3107d5697caSHong Zhang static PetscErrorCode DMCoarsenHook_TSEIMEX(DM fine,DM coarse,void *ctx)
3117d5697caSHong Zhang {
3127d5697caSHong Zhang   PetscFunctionBegin;
3137d5697caSHong Zhang   PetscFunctionReturn(0);
3147d5697caSHong Zhang }
3157d5697caSHong Zhang 
3167d5697caSHong Zhang static PetscErrorCode DMRestrictHook_TSEIMEX(DM fine,Mat restrct,Vec rscale,Mat inject,DM coarse,void *ctx)
3177d5697caSHong Zhang {
3187d5697caSHong Zhang   TS ts = (TS)ctx;
3197d5697caSHong Zhang   Vec Z,Z_c;
3207d5697caSHong Zhang 
3217d5697caSHong Zhang   PetscFunctionBegin;
3229566063dSJacob Faibussowitsch   PetscCall(TSEIMEXGetVecs(ts,fine,&Z,NULL,NULL,NULL));
3239566063dSJacob Faibussowitsch   PetscCall(TSEIMEXGetVecs(ts,coarse,&Z_c,NULL,NULL,NULL));
3249566063dSJacob Faibussowitsch   PetscCall(MatRestrict(restrct,Z,Z_c));
3259566063dSJacob Faibussowitsch   PetscCall(VecPointwiseMult(Z_c,rscale,Z_c));
3269566063dSJacob Faibussowitsch   PetscCall(TSEIMEXRestoreVecs(ts,fine,&Z,NULL,NULL,NULL));
3279566063dSJacob Faibussowitsch   PetscCall(TSEIMEXRestoreVecs(ts,coarse,&Z_c,NULL,NULL,NULL));
3287d5697caSHong Zhang   PetscFunctionReturn(0);
3297d5697caSHong Zhang }
3307d5697caSHong Zhang 
3317d5697caSHong Zhang static PetscErrorCode TSSetUp_EIMEX(TS ts)
3327d5697caSHong Zhang {
3337d5697caSHong Zhang   TS_EIMEX       *ext = (TS_EIMEX*)ts->data;
3347d5697caSHong Zhang   DM             dm;
3357d5697caSHong Zhang 
336955c1f14SBarry Smith   PetscFunctionBegin;
3377d5697caSHong Zhang   if (!ext->N) { /* ext->max_rows not set */
3389566063dSJacob Faibussowitsch     PetscCall(TSEIMEXSetMaxRows(ts,TSEIMEXDefault));
3397d5697caSHong Zhang   }
3407d5697caSHong Zhang   if (-1 == ext->row_ind && -1 == ext->col_ind) {
3419566063dSJacob Faibussowitsch         PetscCall(TSEIMEXSetRowCol(ts,ext->max_rows,ext->max_rows));
3427d5697caSHong Zhang   } else{/* ext->row_ind and col_ind already set */
3437d5697caSHong Zhang     if (ext->ord_adapt) {
3449566063dSJacob Faibussowitsch       PetscCall(PetscInfo(ts,"Order adaptivity is enabled and TSEIMEXSetRowCol or -ts_eimex_row_col option will take no effect\n"));
3457d5697caSHong Zhang     }
3467d5697caSHong Zhang   }
3477d5697caSHong Zhang 
3487d5697caSHong Zhang   if (ext->ord_adapt) {
3497d5697caSHong Zhang     ext->nstages = 2; /* Start with the 2-stage scheme */
3509566063dSJacob Faibussowitsch     PetscCall(TSEIMEXSetRowCol(ts,ext->nstages,ext->nstages));
3517d5697caSHong Zhang   } else{
3527d5697caSHong Zhang     ext->nstages = ext->max_rows; /* by default nstages is the same as max_rows, this can be changed by setting order adaptivity */
3537d5697caSHong Zhang   }
3547d5697caSHong Zhang 
3559566063dSJacob Faibussowitsch   PetscCall(TSGetAdapt(ts,&ts->adapt));
3562ffb9264SLisandro Dalcin 
3579566063dSJacob Faibussowitsch   PetscCall(VecDuplicateVecs(ts->vec_sol,(1+ext->nstages)*ext->nstages/2,&ext->T));/* full T table */
3589566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(ts->vec_sol,&ext->YdotI));
3599566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(ts->vec_sol,&ext->YdotRHS));
3609566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(ts->vec_sol,&ext->Ydot));
3619566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(ts->vec_sol,&ext->VecSolPrev));
3629566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(ts->vec_sol,&ext->Y));
3639566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(ts->vec_sol,&ext->Z));
3649566063dSJacob Faibussowitsch   PetscCall(TSGetDM(ts,&dm));
3657d5697caSHong Zhang   if (dm) {
3669566063dSJacob Faibussowitsch     PetscCall(DMCoarsenHookAdd(dm,DMCoarsenHook_TSEIMEX,DMRestrictHook_TSEIMEX,ts));
3677d5697caSHong Zhang   }
3687d5697caSHong Zhang   PetscFunctionReturn(0);
3697d5697caSHong Zhang }
3707d5697caSHong Zhang 
3714416b707SBarry Smith static PetscErrorCode TSSetFromOptions_EIMEX(PetscOptionItems *PetscOptionsObject,TS ts)
3727d5697caSHong Zhang {
3737d5697caSHong Zhang   TS_EIMEX       *ext = (TS_EIMEX*)ts->data;
3749200755eSBarry Smith   PetscInt       tindex[2];
3757d5697caSHong Zhang   PetscInt       np = 2, nrows=TSEIMEXDefault;
3769200755eSBarry Smith 
3777d5697caSHong Zhang   PetscFunctionBegin;
3789200755eSBarry Smith   tindex[0] = TSEIMEXDefault;
3799200755eSBarry Smith   tindex[1] = TSEIMEXDefault;
3809566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHead(PetscOptionsObject,"EIMEX ODE solver options"));
3817d5697caSHong Zhang   {
3827d5697caSHong Zhang     PetscBool flg;
3839566063dSJacob Faibussowitsch     PetscCall(PetscOptionsInt("-ts_eimex_max_rows","Define the maximum number of rows used","TSEIMEXSetMaxRows",nrows,&nrows,&flg)); /* default value 3 */
3847d5697caSHong Zhang     if (flg) {
3859566063dSJacob Faibussowitsch       PetscCall(TSEIMEXSetMaxRows(ts,nrows));
3867d5697caSHong Zhang     }
3879566063dSJacob Faibussowitsch     PetscCall(PetscOptionsIntArray("-ts_eimex_row_col","Return the specific term in the T table","TSEIMEXSetRowCol",tindex,&np,&flg));
3887d5697caSHong Zhang     if (flg) {
3899566063dSJacob Faibussowitsch       PetscCall(TSEIMEXSetRowCol(ts,tindex[0],tindex[1]));
3907d5697caSHong Zhang     }
3919566063dSJacob Faibussowitsch     PetscCall(PetscOptionsBool("-ts_eimex_order_adapt","Solve the problem with adaptive order","TSEIMEXSetOrdAdapt",ext->ord_adapt,&ext->ord_adapt,NULL));
3927d5697caSHong Zhang   }
3939566063dSJacob Faibussowitsch   PetscCall(PetscOptionsTail());
3947d5697caSHong Zhang   PetscFunctionReturn(0);
3957d5697caSHong Zhang }
3967d5697caSHong Zhang 
3977d5697caSHong Zhang static PetscErrorCode TSView_EIMEX(TS ts,PetscViewer viewer)
3987d5697caSHong Zhang {
3997d5697caSHong Zhang   PetscFunctionBegin;
4007d5697caSHong Zhang   PetscFunctionReturn(0);
4017d5697caSHong Zhang }
4027d5697caSHong Zhang 
4037d5697caSHong Zhang /*@C
4047d5697caSHong Zhang   TSEIMEXSetMaxRows - Set the maximum number of rows for EIMEX schemes
4057d5697caSHong Zhang 
4067d5697caSHong Zhang   Logically collective
4077d5697caSHong Zhang 
408d8d19677SJose E. Roman   Input Parameters:
4097d5697caSHong Zhang +  ts - timestepping context
4107d5697caSHong Zhang -  nrows - maximum number of rows
4117d5697caSHong Zhang 
4127d5697caSHong Zhang   Level: intermediate
4137d5697caSHong Zhang 
4147d5697caSHong Zhang .seealso: TSEIMEXSetRowCol(), TSEIMEXSetOrdAdapt(), TSEIMEX
4157d5697caSHong Zhang @*/
4167d5697caSHong Zhang PetscErrorCode TSEIMEXSetMaxRows(TS ts, PetscInt nrows)
4177d5697caSHong Zhang {
4187d5697caSHong Zhang   PetscFunctionBegin;
4197d5697caSHong Zhang   PetscValidHeaderSpecific(ts,TS_CLASSID,1);
420*cac4c232SBarry Smith   PetscTryMethod(ts,"TSEIMEXSetMaxRows_C",(TS,PetscInt),(ts,nrows));
4217d5697caSHong Zhang   PetscFunctionReturn(0);
4227d5697caSHong Zhang }
4237d5697caSHong Zhang 
4247d5697caSHong Zhang /*@C
4257d5697caSHong Zhang   TSEIMEXSetRowCol - Set the type index in the T table for the return value
4267d5697caSHong Zhang 
4277d5697caSHong Zhang   Logically collective
4287d5697caSHong Zhang 
429d8d19677SJose E. Roman   Input Parameters:
4307d5697caSHong Zhang +  ts - timestepping context
4317d5697caSHong Zhang -  tindex - index in the T table
4327d5697caSHong Zhang 
4337d5697caSHong Zhang   Level: intermediate
4347d5697caSHong Zhang 
4357d5697caSHong Zhang .seealso: TSEIMEXSetMaxRows(), TSEIMEXSetOrdAdapt(), TSEIMEX
4367d5697caSHong Zhang @*/
4377d5697caSHong Zhang PetscErrorCode TSEIMEXSetRowCol(TS ts, PetscInt row, PetscInt col)
4387d5697caSHong Zhang {
4397d5697caSHong Zhang   PetscFunctionBegin;
4407d5697caSHong Zhang   PetscValidHeaderSpecific(ts,TS_CLASSID,1);
441*cac4c232SBarry Smith   PetscTryMethod(ts,"TSEIMEXSetRowCol_C",(TS,PetscInt, PetscInt),(ts,row,col));
4427d5697caSHong Zhang   PetscFunctionReturn(0);
4437d5697caSHong Zhang }
4447d5697caSHong Zhang 
4457d5697caSHong Zhang /*@C
4467d5697caSHong Zhang   TSEIMEXSetOrdAdapt - Set the order adaptativity
4477d5697caSHong Zhang 
4487d5697caSHong Zhang   Logically collective
4497d5697caSHong Zhang 
450d8d19677SJose E. Roman   Input Parameters:
4517d5697caSHong Zhang +  ts - timestepping context
4527d5697caSHong Zhang -  tindex - index in the T table
4537d5697caSHong Zhang 
4547d5697caSHong Zhang   Level: intermediate
4557d5697caSHong Zhang 
4567d5697caSHong Zhang .seealso: TSEIMEXSetRowCol(), TSEIMEXSetOrdAdapt(), TSEIMEX
4577d5697caSHong Zhang @*/
4587d5697caSHong Zhang PetscErrorCode TSEIMEXSetOrdAdapt(TS ts, PetscBool flg)
4597d5697caSHong Zhang {
4607d5697caSHong Zhang   PetscFunctionBegin;
4617d5697caSHong Zhang   PetscValidHeaderSpecific(ts,TS_CLASSID,1);
462*cac4c232SBarry Smith   PetscTryMethod(ts,"TSEIMEXSetOrdAdapt_C",(TS,PetscBool),(ts,flg));
4637d5697caSHong Zhang   PetscFunctionReturn(0);
4647d5697caSHong Zhang }
4657d5697caSHong Zhang 
4664042b796SJed Brown static PetscErrorCode TSEIMEXSetMaxRows_EIMEX(TS ts,PetscInt nrows)
4677d5697caSHong Zhang {
4687d5697caSHong Zhang   TS_EIMEX *ext = (TS_EIMEX*)ts->data;
4697d5697caSHong Zhang   PetscInt       i;
4707d5697caSHong Zhang 
4717d5697caSHong Zhang   PetscFunctionBegin;
4723c633725SBarry Smith   PetscCheck(nrows >= 0 && nrows <= 100,((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Max number of rows (current value %D) should be an integer number between 1 and 100",nrows);
4739566063dSJacob Faibussowitsch   PetscCall(PetscFree(ext->N));
4747d5697caSHong Zhang   ext->max_rows = nrows;
4759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nrows,&ext->N));
4767d5697caSHong Zhang   for (i=0;i<nrows;i++) ext->N[i]=i+1;
4777d5697caSHong Zhang   PetscFunctionReturn(0);
4787d5697caSHong Zhang }
4797d5697caSHong Zhang 
4804042b796SJed Brown static PetscErrorCode TSEIMEXSetRowCol_EIMEX(TS ts,PetscInt row,PetscInt col)
4817d5697caSHong Zhang {
4827d5697caSHong Zhang   TS_EIMEX *ext = (TS_EIMEX*)ts->data;
4837d5697caSHong Zhang 
4847d5697caSHong Zhang   PetscFunctionBegin;
4853c633725SBarry Smith   PetscCheck(row >= 1 && col >= 1,((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"The row or column index (current value %d,%d) should not be less than 1 ",row,col);
4863c633725SBarry Smith   PetscCheck(row <= ext->max_rows && col <= ext->max_rows,((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"The row or column index (current value %d,%d) exceeds the maximum number of rows %d",row,col,ext->max_rows);
4873c633725SBarry Smith   PetscCheck(col <= row,((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"The column index (%d) exceeds the row index (%d)",col,row);
4887d5697caSHong Zhang 
4897d5697caSHong Zhang   ext->row_ind = row - 1;
4907d5697caSHong Zhang   ext->col_ind = col - 1; /* Array index in C starts from 0 */
4917d5697caSHong Zhang   PetscFunctionReturn(0);
4927d5697caSHong Zhang }
4937d5697caSHong Zhang 
4944042b796SJed Brown static PetscErrorCode TSEIMEXSetOrdAdapt_EIMEX(TS ts,PetscBool flg)
4957d5697caSHong Zhang {
4967d5697caSHong Zhang   TS_EIMEX *ext = (TS_EIMEX*)ts->data;
4977d5697caSHong Zhang   PetscFunctionBegin;
4987d5697caSHong Zhang   ext->ord_adapt = flg;
4997d5697caSHong Zhang   PetscFunctionReturn(0);
5007d5697caSHong Zhang }
5017d5697caSHong Zhang 
5027d5697caSHong Zhang /*MC
503679f3ef1SBarry Smith       TSEIMEX - Time stepping with Extrapolated IMEX methods.
504679f3ef1SBarry Smith 
505679f3ef1SBarry Smith    These methods are intended for problems with well-separated time scales, especially when a slow scale is strongly nonlinear such that it
506679f3ef1SBarry Smith    is expensive to solve with a fully implicit method. The user should provide the stiff part of the equation using TSSetIFunction() and the
507679f3ef1SBarry Smith    non-stiff part with TSSetRHSFunction().
5087d5697caSHong Zhang 
5097d5697caSHong Zhang    Notes:
5107d5697caSHong Zhang   The default is a 3-stage scheme, it can be changed with TSEIMEXSetMaxRows() or -ts_eimex_max_rows
5117d5697caSHong Zhang 
5127d5697caSHong Zhang   This method currently only works with ODE, for which the stiff part G(t,X,Xdot) has the form Xdot + Ghat(t,X).
5137d5697caSHong Zhang 
514679f3ef1SBarry Smith   The general system is written as
515679f3ef1SBarry Smith 
516679f3ef1SBarry Smith   G(t,X,Xdot) = F(t,X)
517679f3ef1SBarry Smith 
518679f3ef1SBarry Smith   where G represents the stiff part and F represents the non-stiff part. The user should provide the stiff part
519679f3ef1SBarry Smith   of the equation using TSSetIFunction() and the non-stiff part with TSSetRHSFunction().
520679f3ef1SBarry Smith   This method is designed to be linearly implicit on G and can use an approximate and lagged Jacobian.
521679f3ef1SBarry Smith 
522679f3ef1SBarry Smith   Another common form for the system is
523679f3ef1SBarry Smith 
524679f3ef1SBarry Smith   y'=f(x)+g(x)
525679f3ef1SBarry Smith 
526679f3ef1SBarry Smith   The relationship between F,G and f,g is
527679f3ef1SBarry Smith 
528679f3ef1SBarry Smith   G = y'-g(x), F = f(x)
529679f3ef1SBarry Smith 
530679f3ef1SBarry Smith  References
531679f3ef1SBarry Smith   E. Constantinescu and A. Sandu, Extrapolated implicit-explicit time stepping, SIAM Journal on Scientific
532679f3ef1SBarry Smith Computing, 31 (2010), pp. 4452-4477.
533679f3ef1SBarry Smith 
5347d5697caSHong Zhang       Level: beginner
5357d5697caSHong Zhang 
536679f3ef1SBarry Smith .seealso:  TSCreate(), TS, TSSetType(), TSEIMEXSetMaxRows(), TSEIMEXSetRowCol(), TSEIMEXSetOrdAdapt()
537679f3ef1SBarry Smith 
5387d5697caSHong Zhang  M*/
5394042b796SJed Brown PETSC_EXTERN PetscErrorCode TSCreate_EIMEX(TS ts)
5407d5697caSHong Zhang {
5417d5697caSHong Zhang   TS_EIMEX       *ext;
5427d5697caSHong Zhang 
5437d5697caSHong Zhang   PetscFunctionBegin;
5447d5697caSHong Zhang 
5457d5697caSHong Zhang   ts->ops->reset          = TSReset_EIMEX;
5467d5697caSHong Zhang   ts->ops->destroy        = TSDestroy_EIMEX;
5477d5697caSHong Zhang   ts->ops->view           = TSView_EIMEX;
5487d5697caSHong Zhang   ts->ops->setup          = TSSetUp_EIMEX;
5497d5697caSHong Zhang   ts->ops->step           = TSStep_EIMEX;
5507d5697caSHong Zhang   ts->ops->interpolate    = TSInterpolate_EIMEX;
5517d5697caSHong Zhang   ts->ops->evaluatestep   = TSEvaluateStep_EIMEX;
5527d5697caSHong Zhang   ts->ops->setfromoptions = TSSetFromOptions_EIMEX;
5537d5697caSHong Zhang   ts->ops->snesfunction   = SNESTSFormFunction_EIMEX;
5547d5697caSHong Zhang   ts->ops->snesjacobian   = SNESTSFormJacobian_EIMEX;
5552ffb9264SLisandro Dalcin   ts->default_adapt_type  = TSADAPTNONE;
5567d5697caSHong Zhang 
557efd4aadfSBarry Smith   ts->usessnes = PETSC_TRUE;
558efd4aadfSBarry Smith 
5599566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(ts,&ext));
5607d5697caSHong Zhang   ts->data = (void*)ext;
5617d5697caSHong Zhang 
5627d5697caSHong Zhang   ext->ord_adapt = PETSC_FALSE; /* By default, no order adapativity */
5637d5697caSHong Zhang   ext->row_ind   = -1;
5647d5697caSHong Zhang   ext->col_ind   = -1;
5657d5697caSHong Zhang   ext->max_rows  = TSEIMEXDefault;
5667d5697caSHong Zhang   ext->nstages   = TSEIMEXDefault;
5677d5697caSHong Zhang 
5689566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetMaxRows_C", TSEIMEXSetMaxRows_EIMEX));
5699566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetRowCol_C",  TSEIMEXSetRowCol_EIMEX));
5709566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetOrdAdapt_C",TSEIMEXSetOrdAdapt_EIMEX));
5717d5697caSHong Zhang   PetscFunctionReturn(0);
5727d5697caSHong Zhang }
573