17d5697caSHong Zhang 2af0996ceSBarry Smith #include <petsc/private/tsimpl.h> /*I "petscts.h" I*/ 34042b796SJed Brown #include <petscdm.h> 47d5697caSHong Zhang 57d5697caSHong Zhang static const PetscInt TSEIMEXDefault = 3; 67d5697caSHong Zhang 77d5697caSHong Zhang typedef struct { 87d5697caSHong Zhang PetscInt row_ind; /* Return the term T[row_ind][col_ind] */ 97d5697caSHong Zhang PetscInt col_ind; /* Return the term T[row_ind][col_ind] */ 107d5697caSHong Zhang PetscInt nstages; /* Numbers of stages in current scheme */ 117d5697caSHong Zhang PetscInt max_rows; /* Maximum number of rows */ 127d5697caSHong Zhang PetscInt *N; /* Harmonic sequence N[max_rows] */ 137d5697caSHong Zhang Vec Y; /* States computed during the step, used to complete the step */ 147d5697caSHong Zhang Vec Z; /* For shift*(Y-Z) */ 157d5697caSHong Zhang Vec *T; /* Working table, size determined by nstages */ 167d5697caSHong Zhang Vec YdotRHS; /* f(x) Work vector holding YdotRHS during residual evaluation */ 177d5697caSHong Zhang Vec YdotI; /* xdot-g(x) Work vector holding YdotI = G(t,x,xdot) when xdot =0 */ 187d5697caSHong Zhang Vec Ydot; /* f(x)+g(x) Work vector */ 197d5697caSHong Zhang Vec VecSolPrev; /* Work vector holding the solution from the previous step (used for interpolation) */ 207d5697caSHong Zhang PetscReal shift; 217d5697caSHong Zhang PetscReal ctime; 227d5697caSHong Zhang PetscBool recompute_jacobian; /* Recompute the Jacobian at each stage, default is to freeze the Jacobian at the start of each step */ 237d5697caSHong Zhang PetscBool ord_adapt; /* order adapativity */ 247d5697caSHong Zhang TSStepStatus status; 257d5697caSHong Zhang } TS_EIMEX; 267d5697caSHong Zhang 277d5697caSHong Zhang /* This function is pure */ 287d5697caSHong Zhang static PetscInt Map(PetscInt i, PetscInt j, PetscInt s) 297d5697caSHong Zhang { 307d5697caSHong Zhang return ((2*s-j+1)*j/2+i-j); 317d5697caSHong Zhang } 327d5697caSHong Zhang 337d5697caSHong Zhang static PetscErrorCode TSEvaluateStep_EIMEX(TS ts,PetscInt order,Vec X,PetscBool *done) 347d5697caSHong Zhang { 357d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 367d5697caSHong Zhang const PetscInt ns = ext->nstages; 377d5697caSHong Zhang PetscFunctionBegin; 389566063dSJacob Faibussowitsch PetscCall(VecCopy(ext->T[Map(ext->row_ind,ext->col_ind,ns)],X)); 397d5697caSHong Zhang PetscFunctionReturn(0); 407d5697caSHong Zhang } 417d5697caSHong Zhang 427d5697caSHong Zhang static PetscErrorCode TSStage_EIMEX(TS ts,PetscInt istage) 437d5697caSHong Zhang { 447d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 457d5697caSHong Zhang PetscReal h; 467d5697caSHong Zhang Vec Y=ext->Y, Z=ext->Z; 477d5697caSHong Zhang SNES snes; 487d5697caSHong Zhang TSAdapt adapt; 497d5697caSHong Zhang PetscInt i,its,lits; 507d5697caSHong Zhang PetscBool accept; 517d5697caSHong Zhang 527d5697caSHong Zhang PetscFunctionBegin; 539566063dSJacob Faibussowitsch PetscCall(TSGetSNES(ts,&snes)); 547d5697caSHong Zhang h = ts->time_step/ext->N[istage];/* step size for the istage-th stage */ 557d5697caSHong Zhang ext->shift = 1./h; 569566063dSJacob Faibussowitsch PetscCall(SNESSetLagJacobian(snes,-2)); /* Recompute the Jacobian on this solve, but not again */ 579566063dSJacob Faibussowitsch PetscCall(VecCopy(ext->VecSolPrev,Y)); /* Take the previous solution as initial step */ 587d5697caSHong Zhang 597d5697caSHong Zhang for (i=0; i<ext->N[istage]; i++) { 607d5697caSHong Zhang ext->ctime = ts->ptime + h*i; 619566063dSJacob Faibussowitsch PetscCall(VecCopy(Y,Z));/* Save the solution of the previous substep */ 629566063dSJacob Faibussowitsch PetscCall(SNESSolve(snes,NULL,Y)); 639566063dSJacob Faibussowitsch PetscCall(SNESGetIterationNumber(snes,&its)); 649566063dSJacob Faibussowitsch PetscCall(SNESGetLinearSolveIterations(snes,&lits)); 657d5697caSHong Zhang ts->snes_its += its; ts->ksp_its += lits; 669566063dSJacob Faibussowitsch PetscCall(TSGetAdapt(ts,&adapt)); 679566063dSJacob Faibussowitsch PetscCall(TSAdaptCheckStage(adapt,ts,ext->ctime,Y,&accept)); 687d5697caSHong Zhang } 697d5697caSHong Zhang PetscFunctionReturn(0); 707d5697caSHong Zhang } 717d5697caSHong Zhang 727d5697caSHong Zhang static PetscErrorCode TSStep_EIMEX(TS ts) 737d5697caSHong Zhang { 747d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 757d5697caSHong Zhang const PetscInt ns = ext->nstages; 767d5697caSHong Zhang Vec *T=ext->T, Y=ext->Y; 777d5697caSHong Zhang SNES snes; 787d5697caSHong Zhang PetscInt i,j; 797d5697caSHong Zhang PetscBool accept = PETSC_FALSE; 807453f775SEmil Constantinescu PetscReal alpha,local_error,local_error_a,local_error_r; 817d5697caSHong Zhang 82*d0609cedSBarry Smith PetscFunctionBegin; 839566063dSJacob Faibussowitsch PetscCall(TSGetSNES(ts,&snes)); 849566063dSJacob Faibussowitsch PetscCall(SNESSetType(snes,"ksponly")); 857d5697caSHong Zhang ext->status = TS_STEP_INCOMPLETE; 867d5697caSHong Zhang 879566063dSJacob Faibussowitsch PetscCall(VecCopy(ts->vec_sol,ext->VecSolPrev)); 887d5697caSHong Zhang 897d5697caSHong Zhang /* Apply n_j steps of the base method to obtain solutions of T(j,1),1<=j<=s */ 907d5697caSHong Zhang for (j=0; j<ns; j++) { 919566063dSJacob Faibussowitsch PetscCall(TSStage_EIMEX(ts,j)); 929566063dSJacob Faibussowitsch PetscCall(VecCopy(Y,T[j])); 937d5697caSHong Zhang } 947d5697caSHong Zhang 957d5697caSHong Zhang for (i=1;i<ns;i++) { 967d5697caSHong Zhang for (j=i;j<ns;j++) { 977d5697caSHong Zhang alpha = -(PetscReal)ext->N[j]/ext->N[j-i]; 98*d0609cedSBarry Smith PetscCall(VecAXPBYPCZ(T[Map(j,i,ns)],alpha,1.0,0,T[Map(j,i-1,ns)],T[Map(j-1,i-1,ns)]));/* T[j][i]=alpha*T[j][i-1]+T[j-1][i-1] */ 997d5697caSHong Zhang alpha = 1.0/(1.0 + alpha); 1009566063dSJacob Faibussowitsch PetscCall(VecScale(T[Map(j,i,ns)],alpha)); 1017d5697caSHong Zhang } 1027d5697caSHong Zhang } 1037d5697caSHong Zhang 1049566063dSJacob Faibussowitsch PetscCall(TSEvaluateStep(ts,ns,ts->vec_sol,NULL));/*update ts solution */ 1057d5697caSHong Zhang 1067d5697caSHong Zhang if (ext->ord_adapt && ext->nstages < ext->max_rows) { 1077d5697caSHong Zhang accept = PETSC_FALSE; 1087d5697caSHong Zhang while (!accept && ext->nstages < ext->max_rows) { 1099566063dSJacob Faibussowitsch PetscCall(TSErrorWeightedNorm(ts,ts->vec_sol,T[Map(ext->nstages-1,ext->nstages-2,ext->nstages)],ts->adapt->wnormtype,&local_error,&local_error_a,&local_error_r)); 1107d5697caSHong Zhang accept = (local_error < 1.0)? PETSC_TRUE : PETSC_FALSE; 1117d5697caSHong Zhang 1127d5697caSHong Zhang if (!accept) {/* add one more stage*/ 1139566063dSJacob Faibussowitsch PetscCall(TSStage_EIMEX(ts,ext->nstages)); 1147d5697caSHong Zhang ext->nstages++; ext->row_ind++; ext->col_ind++; 1157d5697caSHong Zhang /*T table need to be recycled*/ 1169566063dSJacob Faibussowitsch PetscCall(VecDuplicateVecs(ts->vec_sol,(1+ext->nstages)*ext->nstages/2,&ext->T)); 1177d5697caSHong Zhang for (i=0; i<ext->nstages-1; i++) { 1187d5697caSHong Zhang for (j=0; j<=i; j++) { 1199566063dSJacob Faibussowitsch PetscCall(VecCopy(T[Map(i,j,ext->nstages-1)],ext->T[Map(i,j,ext->nstages)])); 1207d5697caSHong Zhang } 1217d5697caSHong Zhang } 1229566063dSJacob Faibussowitsch PetscCall(VecDestroyVecs(ext->nstages*(ext->nstages-1)/2,&T)); 1237d5697caSHong Zhang T = ext->T; /*reset the pointer*/ 1247d5697caSHong Zhang /*recycling finished, store the new solution*/ 1259566063dSJacob Faibussowitsch PetscCall(VecCopy(Y,T[ext->nstages-1])); 1267d5697caSHong Zhang /*extrapolation for the newly added stage*/ 1277d5697caSHong Zhang for (i=1;i<ext->nstages;i++) { 1287d5697caSHong Zhang alpha = -(PetscReal)ext->N[ext->nstages-1]/ext->N[ext->nstages-1-i]; 129*d0609cedSBarry Smith PetscCall(VecAXPBYPCZ(T[Map(ext->nstages-1,i,ext->nstages)],alpha,1.0,0,T[Map(ext->nstages-1,i-1,ext->nstages)],T[Map(ext->nstages-1-1,i-1,ext->nstages)]));/*T[ext->nstages-1][i]=alpha*T[ext->nstages-1][i-1]+T[ext->nstages-1-1][i-1]*/ 1307d5697caSHong Zhang alpha = 1.0/(1.0 + alpha); 1319566063dSJacob Faibussowitsch PetscCall(VecScale(T[Map(ext->nstages-1,i,ext->nstages)],alpha)); 1327d5697caSHong Zhang } 1337d5697caSHong Zhang /*update ts solution */ 1349566063dSJacob Faibussowitsch PetscCall(TSEvaluateStep(ts,ext->nstages,ts->vec_sol,NULL)); 1357d5697caSHong Zhang }/*end if !accept*/ 1367d5697caSHong Zhang }/*end while*/ 1377d5697caSHong Zhang 1387d5697caSHong Zhang if (ext->nstages == ext->max_rows) { 1399566063dSJacob Faibussowitsch PetscCall(PetscInfo(ts,"Max number of rows has been used\n")); 1407d5697caSHong Zhang } 1417d5697caSHong Zhang }/*end if ext->ord_adapt*/ 1427d5697caSHong Zhang ts->ptime += ts->time_step; 1437d5697caSHong Zhang ext->status = TS_STEP_COMPLETE; 1447d5697caSHong Zhang 1457d5697caSHong Zhang if (ext->status != TS_STEP_COMPLETE && !ts->reason) ts->reason = TS_DIVERGED_STEP_REJECTED; 1467d5697caSHong Zhang PetscFunctionReturn(0); 1477d5697caSHong Zhang } 1487d5697caSHong Zhang 1497d5697caSHong Zhang /* cubic Hermit spline */ 1507d5697caSHong Zhang static PetscErrorCode TSInterpolate_EIMEX(TS ts,PetscReal itime,Vec X) 1517d5697caSHong Zhang { 1527d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 1537d5697caSHong Zhang PetscReal t,a,b; 154be5899b3SLisandro Dalcin Vec Y0=ext->VecSolPrev,Y1=ext->Y,Ydot=ext->Ydot,YdotI=ext->YdotI; 155be5899b3SLisandro Dalcin const PetscReal h = ts->ptime - ts->ptime_prev; 1567d5697caSHong Zhang PetscFunctionBegin; 1577d5697caSHong Zhang t = (itime -ts->ptime + h)/h; 1587d5697caSHong Zhang /* YdotI = -f(x)-g(x) */ 1597d5697caSHong Zhang 1609566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(Ydot)); 1619566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts,ts->ptime-h,Y0,Ydot,YdotI,PETSC_FALSE)); 1627d5697caSHong Zhang 16316dc5bacSEmil Constantinescu a = 2.0*t*t*t - 3.0*t*t + 1.0; 16416dc5bacSEmil Constantinescu b = -(t*t*t - 2.0*t*t + t)*h; 1659566063dSJacob Faibussowitsch PetscCall(VecAXPBYPCZ(X,a,b,0.0,Y0,YdotI)); 1667d5697caSHong Zhang 1679566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts,ts->ptime,Y1,Ydot,YdotI,PETSC_FALSE)); 16816dc5bacSEmil Constantinescu a = -2.0*t*t*t+3.0*t*t; 16916dc5bacSEmil Constantinescu b = -(t*t*t - t*t)*h; 1709566063dSJacob Faibussowitsch PetscCall(VecAXPBYPCZ(X,a,b,1.0,Y1,YdotI)); 1717d5697caSHong Zhang 1727d5697caSHong Zhang PetscFunctionReturn(0); 1737d5697caSHong Zhang } 1747d5697caSHong Zhang 1757d5697caSHong Zhang static PetscErrorCode TSReset_EIMEX(TS ts) 1767d5697caSHong Zhang { 1777d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 1787d5697caSHong Zhang PetscInt ns; 1797d5697caSHong Zhang 1807d5697caSHong Zhang PetscFunctionBegin; 1817d5697caSHong Zhang ns = ext->nstages; 1829566063dSJacob Faibussowitsch PetscCall(VecDestroyVecs((1+ns)*ns/2,&ext->T)); 1839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Y)); 1849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Z)); 1859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->YdotRHS)); 1869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->YdotI)); 1879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Ydot)); 1889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->VecSolPrev)); 1899566063dSJacob Faibussowitsch PetscCall(PetscFree(ext->N)); 1907d5697caSHong Zhang PetscFunctionReturn(0); 1917d5697caSHong Zhang } 1927d5697caSHong Zhang 1937d5697caSHong Zhang static PetscErrorCode TSDestroy_EIMEX(TS ts) 1947d5697caSHong Zhang { 1957d5697caSHong Zhang PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(TSReset_EIMEX(ts)); 1979566063dSJacob Faibussowitsch PetscCall(PetscFree(ts->data)); 1989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetMaxRows_C",NULL)); 1999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetRowCol_C",NULL)); 2009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetOrdAdapt_C",NULL)); 2017d5697caSHong Zhang PetscFunctionReturn(0); 2027d5697caSHong Zhang } 2037d5697caSHong Zhang 2047d5697caSHong Zhang static PetscErrorCode TSEIMEXGetVecs(TS ts,DM dm,Vec *Z,Vec *Ydot,Vec *YdotI, Vec *YdotRHS) 2057d5697caSHong Zhang { 2067d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 2077d5697caSHong Zhang 2087d5697caSHong Zhang PetscFunctionBegin; 2097d5697caSHong Zhang if (Z) { 2107d5697caSHong Zhang if (dm && dm != ts->dm) { 2119566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm,"TSEIMEX_Z",Z)); 2127d5697caSHong Zhang } else *Z = ext->Z; 2137d5697caSHong Zhang } 2147d5697caSHong Zhang if (Ydot) { 2157d5697caSHong Zhang if (dm && dm != ts->dm) { 2169566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm,"TSEIMEX_Ydot",Ydot)); 2177d5697caSHong Zhang } else *Ydot = ext->Ydot; 2187d5697caSHong Zhang } 2197d5697caSHong Zhang if (YdotI) { 2207d5697caSHong Zhang if (dm && dm != ts->dm) { 2219566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm,"TSEIMEX_YdotI",YdotI)); 2227d5697caSHong Zhang } else *YdotI = ext->YdotI; 2237d5697caSHong Zhang } 2247d5697caSHong Zhang if (YdotRHS) { 2257d5697caSHong Zhang if (dm && dm != ts->dm) { 2269566063dSJacob Faibussowitsch PetscCall(DMGetNamedGlobalVector(dm,"TSEIMEX_YdotRHS",YdotRHS)); 2277d5697caSHong Zhang } else *YdotRHS = ext->YdotRHS; 2287d5697caSHong Zhang } 2297d5697caSHong Zhang PetscFunctionReturn(0); 2307d5697caSHong Zhang } 2317d5697caSHong Zhang 2327d5697caSHong Zhang static PetscErrorCode TSEIMEXRestoreVecs(TS ts,DM dm,Vec *Z,Vec *Ydot,Vec *YdotI,Vec *YdotRHS) 2337d5697caSHong Zhang { 2347d5697caSHong Zhang PetscFunctionBegin; 2357d5697caSHong Zhang if (Z) { 2367d5697caSHong Zhang if (dm && dm != ts->dm) { 2379566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedGlobalVector(dm,"TSEIMEX_Z",Z)); 2387d5697caSHong Zhang } 2397d5697caSHong Zhang } 2407d5697caSHong Zhang if (Ydot) { 2417d5697caSHong Zhang if (dm && dm != ts->dm) { 2429566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedGlobalVector(dm,"TSEIMEX_Ydot",Ydot)); 2437d5697caSHong Zhang } 2447d5697caSHong Zhang } 2457d5697caSHong Zhang if (YdotI) { 2467d5697caSHong Zhang if (dm && dm != ts->dm) { 2479566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedGlobalVector(dm,"TSEIMEX_YdotI",YdotI)); 2487d5697caSHong Zhang } 2497d5697caSHong Zhang } 2507d5697caSHong Zhang if (YdotRHS) { 2517d5697caSHong Zhang if (dm && dm != ts->dm) { 2529566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedGlobalVector(dm,"TSEIMEX_YdotRHS",YdotRHS)); 2537d5697caSHong Zhang } 2547d5697caSHong Zhang } 2557d5697caSHong Zhang PetscFunctionReturn(0); 2567d5697caSHong Zhang } 2577d5697caSHong Zhang 2587d5697caSHong Zhang /* 2597d5697caSHong Zhang This defines the nonlinear equation that is to be solved with SNES 2607d5697caSHong Zhang Fn[t0+Theta*dt, U, (U-U0)*shift] = 0 2617d5697caSHong Zhang In the case of Backward Euler, Fn = (U-U0)/h-g(t1,U)) 2627d5697caSHong Zhang Since FormIFunction calculates G = ydot - g(t,y), ydot will be set to (U-U0)/h 2637d5697caSHong Zhang */ 2647d5697caSHong Zhang static PetscErrorCode SNESTSFormFunction_EIMEX(SNES snes,Vec X,Vec G,TS ts) 2657d5697caSHong Zhang { 2667d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 2677d5697caSHong Zhang Vec Ydot,Z; 2687d5697caSHong Zhang DM dm,dmsave; 2697d5697caSHong Zhang 2707d5697caSHong Zhang PetscFunctionBegin; 2719566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(G)); 2727d5697caSHong Zhang 2739566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes,&dm)); 2749566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts,dm,&Z,&Ydot,NULL,NULL)); 2759566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(Ydot)); 2767d5697caSHong Zhang dmsave = ts->dm; 2777d5697caSHong Zhang ts->dm = dm; 2789566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts,ext->ctime,X,Ydot,G,PETSC_FALSE)); 2797d5697caSHong Zhang /* PETSC_FALSE indicates non-imex, adding explicit RHS to the implicit I function. */ 2809566063dSJacob Faibussowitsch PetscCall(VecCopy(G,Ydot)); 2817d5697caSHong Zhang ts->dm = dmsave; 2829566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts,dm,&Z,&Ydot,NULL,NULL)); 2837d5697caSHong Zhang 2847d5697caSHong Zhang PetscFunctionReturn(0); 2857d5697caSHong Zhang } 2867d5697caSHong Zhang 2877d5697caSHong Zhang /* 2887d5697caSHong Zhang This defined the Jacobian matrix for SNES. Jn = (I/h-g'(t,y)) 2897d5697caSHong Zhang */ 290d1e9a80fSBarry Smith static PetscErrorCode SNESTSFormJacobian_EIMEX(SNES snes,Vec X,Mat A,Mat B,TS ts) 2917d5697caSHong Zhang { 2927d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 2937d5697caSHong Zhang Vec Ydot; 2947d5697caSHong Zhang DM dm,dmsave; 2957d5697caSHong Zhang PetscFunctionBegin; 2969566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes,&dm)); 2979566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts,dm,NULL,&Ydot,NULL,NULL)); 2989566063dSJacob Faibussowitsch /* PetscCall(VecZeroEntries(Ydot)); */ 2997d5697caSHong Zhang /* ext->Ydot have already been computed in SNESTSFormFunction_EIMEX (SNES guarantees this) */ 3007d5697caSHong Zhang dmsave = ts->dm; 3017d5697caSHong Zhang ts->dm = dm; 3029566063dSJacob Faibussowitsch PetscCall(TSComputeIJacobian(ts,ts->ptime,X,Ydot,ext->shift,A,B,PETSC_TRUE)); 3037d5697caSHong Zhang ts->dm = dmsave; 3049566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts,dm,NULL,&Ydot,NULL,NULL)); 3057d5697caSHong Zhang PetscFunctionReturn(0); 3067d5697caSHong Zhang } 3077d5697caSHong Zhang 3087d5697caSHong Zhang static PetscErrorCode DMCoarsenHook_TSEIMEX(DM fine,DM coarse,void *ctx) 3097d5697caSHong Zhang { 3107d5697caSHong Zhang PetscFunctionBegin; 3117d5697caSHong Zhang PetscFunctionReturn(0); 3127d5697caSHong Zhang } 3137d5697caSHong Zhang 3147d5697caSHong Zhang static PetscErrorCode DMRestrictHook_TSEIMEX(DM fine,Mat restrct,Vec rscale,Mat inject,DM coarse,void *ctx) 3157d5697caSHong Zhang { 3167d5697caSHong Zhang TS ts = (TS)ctx; 3177d5697caSHong Zhang Vec Z,Z_c; 3187d5697caSHong Zhang 3197d5697caSHong Zhang PetscFunctionBegin; 3209566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts,fine,&Z,NULL,NULL,NULL)); 3219566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts,coarse,&Z_c,NULL,NULL,NULL)); 3229566063dSJacob Faibussowitsch PetscCall(MatRestrict(restrct,Z,Z_c)); 3239566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(Z_c,rscale,Z_c)); 3249566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts,fine,&Z,NULL,NULL,NULL)); 3259566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts,coarse,&Z_c,NULL,NULL,NULL)); 3267d5697caSHong Zhang PetscFunctionReturn(0); 3277d5697caSHong Zhang } 3287d5697caSHong Zhang 3297d5697caSHong Zhang static PetscErrorCode TSSetUp_EIMEX(TS ts) 3307d5697caSHong Zhang { 3317d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 3327d5697caSHong Zhang DM dm; 3337d5697caSHong Zhang 334955c1f14SBarry Smith PetscFunctionBegin; 3357d5697caSHong Zhang if (!ext->N) { /* ext->max_rows not set */ 3369566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetMaxRows(ts,TSEIMEXDefault)); 3377d5697caSHong Zhang } 3387d5697caSHong Zhang if (-1 == ext->row_ind && -1 == ext->col_ind) { 3399566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetRowCol(ts,ext->max_rows,ext->max_rows)); 3407d5697caSHong Zhang } else{/* ext->row_ind and col_ind already set */ 3417d5697caSHong Zhang if (ext->ord_adapt) { 3429566063dSJacob Faibussowitsch PetscCall(PetscInfo(ts,"Order adaptivity is enabled and TSEIMEXSetRowCol or -ts_eimex_row_col option will take no effect\n")); 3437d5697caSHong Zhang } 3447d5697caSHong Zhang } 3457d5697caSHong Zhang 3467d5697caSHong Zhang if (ext->ord_adapt) { 3477d5697caSHong Zhang ext->nstages = 2; /* Start with the 2-stage scheme */ 3489566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetRowCol(ts,ext->nstages,ext->nstages)); 3497d5697caSHong Zhang } else{ 3507d5697caSHong Zhang ext->nstages = ext->max_rows; /* by default nstages is the same as max_rows, this can be changed by setting order adaptivity */ 3517d5697caSHong Zhang } 3527d5697caSHong Zhang 3539566063dSJacob Faibussowitsch PetscCall(TSGetAdapt(ts,&ts->adapt)); 3542ffb9264SLisandro Dalcin 3559566063dSJacob Faibussowitsch PetscCall(VecDuplicateVecs(ts->vec_sol,(1+ext->nstages)*ext->nstages/2,&ext->T));/* full T table */ 3569566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol,&ext->YdotI)); 3579566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol,&ext->YdotRHS)); 3589566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol,&ext->Ydot)); 3599566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol,&ext->VecSolPrev)); 3609566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol,&ext->Y)); 3619566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol,&ext->Z)); 3629566063dSJacob Faibussowitsch PetscCall(TSGetDM(ts,&dm)); 3637d5697caSHong Zhang if (dm) { 3649566063dSJacob Faibussowitsch PetscCall(DMCoarsenHookAdd(dm,DMCoarsenHook_TSEIMEX,DMRestrictHook_TSEIMEX,ts)); 3657d5697caSHong Zhang } 3667d5697caSHong Zhang PetscFunctionReturn(0); 3677d5697caSHong Zhang } 3687d5697caSHong Zhang 3694416b707SBarry Smith static PetscErrorCode TSSetFromOptions_EIMEX(PetscOptionItems *PetscOptionsObject,TS ts) 3707d5697caSHong Zhang { 3717d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 3729200755eSBarry Smith PetscInt tindex[2]; 3737d5697caSHong Zhang PetscInt np = 2, nrows=TSEIMEXDefault; 3749200755eSBarry Smith 3757d5697caSHong Zhang PetscFunctionBegin; 3769200755eSBarry Smith tindex[0] = TSEIMEXDefault; 3779200755eSBarry Smith tindex[1] = TSEIMEXDefault; 378*d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject,"EIMEX ODE solver options"); 3797d5697caSHong Zhang { 3807d5697caSHong Zhang PetscBool flg; 3819566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-ts_eimex_max_rows","Define the maximum number of rows used","TSEIMEXSetMaxRows",nrows,&nrows,&flg)); /* default value 3 */ 3827d5697caSHong Zhang if (flg) { 3839566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetMaxRows(ts,nrows)); 3847d5697caSHong Zhang } 3859566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-ts_eimex_row_col","Return the specific term in the T table","TSEIMEXSetRowCol",tindex,&np,&flg)); 3867d5697caSHong Zhang if (flg) { 3879566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetRowCol(ts,tindex[0],tindex[1])); 3887d5697caSHong Zhang } 3899566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-ts_eimex_order_adapt","Solve the problem with adaptive order","TSEIMEXSetOrdAdapt",ext->ord_adapt,&ext->ord_adapt,NULL)); 3907d5697caSHong Zhang } 391*d0609cedSBarry Smith PetscOptionsHeadEnd(); 3927d5697caSHong Zhang PetscFunctionReturn(0); 3937d5697caSHong Zhang } 3947d5697caSHong Zhang 3957d5697caSHong Zhang static PetscErrorCode TSView_EIMEX(TS ts,PetscViewer viewer) 3967d5697caSHong Zhang { 3977d5697caSHong Zhang PetscFunctionBegin; 3987d5697caSHong Zhang PetscFunctionReturn(0); 3997d5697caSHong Zhang } 4007d5697caSHong Zhang 4017d5697caSHong Zhang /*@C 4027d5697caSHong Zhang TSEIMEXSetMaxRows - Set the maximum number of rows for EIMEX schemes 4037d5697caSHong Zhang 4047d5697caSHong Zhang Logically collective 4057d5697caSHong Zhang 406d8d19677SJose E. Roman Input Parameters: 4077d5697caSHong Zhang + ts - timestepping context 4087d5697caSHong Zhang - nrows - maximum number of rows 4097d5697caSHong Zhang 4107d5697caSHong Zhang Level: intermediate 4117d5697caSHong Zhang 4127d5697caSHong Zhang .seealso: TSEIMEXSetRowCol(), TSEIMEXSetOrdAdapt(), TSEIMEX 4137d5697caSHong Zhang @*/ 4147d5697caSHong Zhang PetscErrorCode TSEIMEXSetMaxRows(TS ts, PetscInt nrows) 4157d5697caSHong Zhang { 4167d5697caSHong Zhang PetscFunctionBegin; 4177d5697caSHong Zhang PetscValidHeaderSpecific(ts,TS_CLASSID,1); 418cac4c232SBarry Smith PetscTryMethod(ts,"TSEIMEXSetMaxRows_C",(TS,PetscInt),(ts,nrows)); 4197d5697caSHong Zhang PetscFunctionReturn(0); 4207d5697caSHong Zhang } 4217d5697caSHong Zhang 4227d5697caSHong Zhang /*@C 4237d5697caSHong Zhang TSEIMEXSetRowCol - Set the type index in the T table for the return value 4247d5697caSHong Zhang 4257d5697caSHong Zhang Logically collective 4267d5697caSHong Zhang 427d8d19677SJose E. Roman Input Parameters: 4287d5697caSHong Zhang + ts - timestepping context 4297d5697caSHong Zhang - tindex - index in the T table 4307d5697caSHong Zhang 4317d5697caSHong Zhang Level: intermediate 4327d5697caSHong Zhang 4337d5697caSHong Zhang .seealso: TSEIMEXSetMaxRows(), TSEIMEXSetOrdAdapt(), TSEIMEX 4347d5697caSHong Zhang @*/ 4357d5697caSHong Zhang PetscErrorCode TSEIMEXSetRowCol(TS ts, PetscInt row, PetscInt col) 4367d5697caSHong Zhang { 4377d5697caSHong Zhang PetscFunctionBegin; 4387d5697caSHong Zhang PetscValidHeaderSpecific(ts,TS_CLASSID,1); 439cac4c232SBarry Smith PetscTryMethod(ts,"TSEIMEXSetRowCol_C",(TS,PetscInt, PetscInt),(ts,row,col)); 4407d5697caSHong Zhang PetscFunctionReturn(0); 4417d5697caSHong Zhang } 4427d5697caSHong Zhang 4437d5697caSHong Zhang /*@C 4447d5697caSHong Zhang TSEIMEXSetOrdAdapt - Set the order adaptativity 4457d5697caSHong Zhang 4467d5697caSHong Zhang Logically collective 4477d5697caSHong Zhang 448d8d19677SJose E. Roman Input Parameters: 4497d5697caSHong Zhang + ts - timestepping context 4507d5697caSHong Zhang - tindex - index in the T table 4517d5697caSHong Zhang 4527d5697caSHong Zhang Level: intermediate 4537d5697caSHong Zhang 4547d5697caSHong Zhang .seealso: TSEIMEXSetRowCol(), TSEIMEXSetOrdAdapt(), TSEIMEX 4557d5697caSHong Zhang @*/ 4567d5697caSHong Zhang PetscErrorCode TSEIMEXSetOrdAdapt(TS ts, PetscBool flg) 4577d5697caSHong Zhang { 4587d5697caSHong Zhang PetscFunctionBegin; 4597d5697caSHong Zhang PetscValidHeaderSpecific(ts,TS_CLASSID,1); 460cac4c232SBarry Smith PetscTryMethod(ts,"TSEIMEXSetOrdAdapt_C",(TS,PetscBool),(ts,flg)); 4617d5697caSHong Zhang PetscFunctionReturn(0); 4627d5697caSHong Zhang } 4637d5697caSHong Zhang 4644042b796SJed Brown static PetscErrorCode TSEIMEXSetMaxRows_EIMEX(TS ts,PetscInt nrows) 4657d5697caSHong Zhang { 4667d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 4677d5697caSHong Zhang PetscInt i; 4687d5697caSHong Zhang 4697d5697caSHong Zhang PetscFunctionBegin; 4703c633725SBarry Smith PetscCheck(nrows >= 0 && nrows <= 100,((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Max number of rows (current value %D) should be an integer number between 1 and 100",nrows); 4719566063dSJacob Faibussowitsch PetscCall(PetscFree(ext->N)); 4727d5697caSHong Zhang ext->max_rows = nrows; 4739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrows,&ext->N)); 4747d5697caSHong Zhang for (i=0;i<nrows;i++) ext->N[i]=i+1; 4757d5697caSHong Zhang PetscFunctionReturn(0); 4767d5697caSHong Zhang } 4777d5697caSHong Zhang 4784042b796SJed Brown static PetscErrorCode TSEIMEXSetRowCol_EIMEX(TS ts,PetscInt row,PetscInt col) 4797d5697caSHong Zhang { 4807d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 4817d5697caSHong Zhang 4827d5697caSHong Zhang PetscFunctionBegin; 4833c633725SBarry Smith PetscCheck(row >= 1 && col >= 1,((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"The row or column index (current value %d,%d) should not be less than 1 ",row,col); 4843c633725SBarry Smith PetscCheck(row <= ext->max_rows && col <= ext->max_rows,((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"The row or column index (current value %d,%d) exceeds the maximum number of rows %d",row,col,ext->max_rows); 4853c633725SBarry Smith PetscCheck(col <= row,((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"The column index (%d) exceeds the row index (%d)",col,row); 4867d5697caSHong Zhang 4877d5697caSHong Zhang ext->row_ind = row - 1; 4887d5697caSHong Zhang ext->col_ind = col - 1; /* Array index in C starts from 0 */ 4897d5697caSHong Zhang PetscFunctionReturn(0); 4907d5697caSHong Zhang } 4917d5697caSHong Zhang 4924042b796SJed Brown static PetscErrorCode TSEIMEXSetOrdAdapt_EIMEX(TS ts,PetscBool flg) 4937d5697caSHong Zhang { 4947d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX*)ts->data; 4957d5697caSHong Zhang PetscFunctionBegin; 4967d5697caSHong Zhang ext->ord_adapt = flg; 4977d5697caSHong Zhang PetscFunctionReturn(0); 4987d5697caSHong Zhang } 4997d5697caSHong Zhang 5007d5697caSHong Zhang /*MC 501679f3ef1SBarry Smith TSEIMEX - Time stepping with Extrapolated IMEX methods. 502679f3ef1SBarry Smith 503679f3ef1SBarry Smith These methods are intended for problems with well-separated time scales, especially when a slow scale is strongly nonlinear such that it 504679f3ef1SBarry Smith is expensive to solve with a fully implicit method. The user should provide the stiff part of the equation using TSSetIFunction() and the 505679f3ef1SBarry Smith non-stiff part with TSSetRHSFunction(). 5067d5697caSHong Zhang 5077d5697caSHong Zhang Notes: 5087d5697caSHong Zhang The default is a 3-stage scheme, it can be changed with TSEIMEXSetMaxRows() or -ts_eimex_max_rows 5097d5697caSHong Zhang 5107d5697caSHong Zhang This method currently only works with ODE, for which the stiff part G(t,X,Xdot) has the form Xdot + Ghat(t,X). 5117d5697caSHong Zhang 512679f3ef1SBarry Smith The general system is written as 513679f3ef1SBarry Smith 514679f3ef1SBarry Smith G(t,X,Xdot) = F(t,X) 515679f3ef1SBarry Smith 516679f3ef1SBarry Smith where G represents the stiff part and F represents the non-stiff part. The user should provide the stiff part 517679f3ef1SBarry Smith of the equation using TSSetIFunction() and the non-stiff part with TSSetRHSFunction(). 518679f3ef1SBarry Smith This method is designed to be linearly implicit on G and can use an approximate and lagged Jacobian. 519679f3ef1SBarry Smith 520679f3ef1SBarry Smith Another common form for the system is 521679f3ef1SBarry Smith 522679f3ef1SBarry Smith y'=f(x)+g(x) 523679f3ef1SBarry Smith 524679f3ef1SBarry Smith The relationship between F,G and f,g is 525679f3ef1SBarry Smith 526679f3ef1SBarry Smith G = y'-g(x), F = f(x) 527679f3ef1SBarry Smith 528679f3ef1SBarry Smith References 529679f3ef1SBarry Smith E. Constantinescu and A. Sandu, Extrapolated implicit-explicit time stepping, SIAM Journal on Scientific 530679f3ef1SBarry Smith Computing, 31 (2010), pp. 4452-4477. 531679f3ef1SBarry Smith 5327d5697caSHong Zhang Level: beginner 5337d5697caSHong Zhang 534679f3ef1SBarry Smith .seealso: TSCreate(), TS, TSSetType(), TSEIMEXSetMaxRows(), TSEIMEXSetRowCol(), TSEIMEXSetOrdAdapt() 535679f3ef1SBarry Smith 5367d5697caSHong Zhang M*/ 5374042b796SJed Brown PETSC_EXTERN PetscErrorCode TSCreate_EIMEX(TS ts) 5387d5697caSHong Zhang { 5397d5697caSHong Zhang TS_EIMEX *ext; 5407d5697caSHong Zhang 5417d5697caSHong Zhang PetscFunctionBegin; 5427d5697caSHong Zhang 5437d5697caSHong Zhang ts->ops->reset = TSReset_EIMEX; 5447d5697caSHong Zhang ts->ops->destroy = TSDestroy_EIMEX; 5457d5697caSHong Zhang ts->ops->view = TSView_EIMEX; 5467d5697caSHong Zhang ts->ops->setup = TSSetUp_EIMEX; 5477d5697caSHong Zhang ts->ops->step = TSStep_EIMEX; 5487d5697caSHong Zhang ts->ops->interpolate = TSInterpolate_EIMEX; 5497d5697caSHong Zhang ts->ops->evaluatestep = TSEvaluateStep_EIMEX; 5507d5697caSHong Zhang ts->ops->setfromoptions = TSSetFromOptions_EIMEX; 5517d5697caSHong Zhang ts->ops->snesfunction = SNESTSFormFunction_EIMEX; 5527d5697caSHong Zhang ts->ops->snesjacobian = SNESTSFormJacobian_EIMEX; 5532ffb9264SLisandro Dalcin ts->default_adapt_type = TSADAPTNONE; 5547d5697caSHong Zhang 555efd4aadfSBarry Smith ts->usessnes = PETSC_TRUE; 556efd4aadfSBarry Smith 5579566063dSJacob Faibussowitsch PetscCall(PetscNewLog(ts,&ext)); 5587d5697caSHong Zhang ts->data = (void*)ext; 5597d5697caSHong Zhang 5607d5697caSHong Zhang ext->ord_adapt = PETSC_FALSE; /* By default, no order adapativity */ 5617d5697caSHong Zhang ext->row_ind = -1; 5627d5697caSHong Zhang ext->col_ind = -1; 5637d5697caSHong Zhang ext->max_rows = TSEIMEXDefault; 5647d5697caSHong Zhang ext->nstages = TSEIMEXDefault; 5657d5697caSHong Zhang 5669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetMaxRows_C", TSEIMEXSetMaxRows_EIMEX)); 5679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetRowCol_C", TSEIMEXSetRowCol_EIMEX)); 5689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetOrdAdapt_C",TSEIMEXSetOrdAdapt_EIMEX)); 5697d5697caSHong Zhang PetscFunctionReturn(0); 5707d5697caSHong Zhang } 571