xref: /petsc/src/ts/impls/implicit/sundials/sundials.c (revision acfcf0e5ba359b58e6a8a7af3f239cd7334278e8)
17cb94ee6SHong Zhang #define PETSCTS_DLL
27cb94ee6SHong Zhang 
37cb94ee6SHong Zhang /*
4db268bfaSHong Zhang     Provides a PETSc interface to SUNDIALS/CVODE solver.
57cb94ee6SHong Zhang     The interface to PVODE (old version of CVODE) was originally contributed
67cb94ee6SHong Zhang     by Liyang Xu. It has been redone by Hong Zhang and Dinesh Kaushik.
728adb3f7SHong Zhang 
828adb3f7SHong Zhang     Reference: sundials-2.4.0/examples/cvode/parallel/cvDiurnal_kry_p.c
97cb94ee6SHong Zhang */
1056a740aaSHong Zhang #include "sundials.h"  /*I "petscts.h" I*/
117cb94ee6SHong Zhang 
127cb94ee6SHong Zhang /*
137cb94ee6SHong Zhang       TSPrecond_Sundials - function that we provide to SUNDIALS to
147cb94ee6SHong Zhang                         evaluate the preconditioner.
157cb94ee6SHong Zhang */
167cb94ee6SHong Zhang #undef __FUNCT__
177cb94ee6SHong Zhang #define __FUNCT__ "TSPrecond_Sundials"
187cb94ee6SHong Zhang PetscErrorCode TSPrecond_Sundials(realtype tn,N_Vector y,N_Vector fy,
197cb94ee6SHong Zhang                     booleantype jok,booleantype *jcurPtr,
207cb94ee6SHong Zhang                     realtype _gamma,void *P_data,
217cb94ee6SHong Zhang                     N_Vector vtemp1,N_Vector vtemp2,N_Vector vtemp3)
227cb94ee6SHong Zhang {
237cb94ee6SHong Zhang   TS             ts = (TS) P_data;
247cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
257cb94ee6SHong Zhang   PC             pc = cvode->pc;
267cb94ee6SHong Zhang   PetscErrorCode ierr;
277cb94ee6SHong Zhang   Mat            Jac = ts->B;
287cb94ee6SHong Zhang   Vec            yy = cvode->w1;
297cb94ee6SHong Zhang   PetscScalar    one = 1.0,gm;
307cb94ee6SHong Zhang   MatStructure   str = DIFFERENT_NONZERO_PATTERN;
317cb94ee6SHong Zhang   PetscScalar    *y_data;
327cb94ee6SHong Zhang 
337cb94ee6SHong Zhang   PetscFunctionBegin;
347cb94ee6SHong Zhang   /* This allows us to construct preconditioners in-place if we like */
357cb94ee6SHong Zhang   ierr = MatSetUnfactored(Jac);CHKERRQ(ierr);
367cb94ee6SHong Zhang 
377cb94ee6SHong Zhang   /* jok - TRUE means reuse current Jacobian else recompute Jacobian */
387cb94ee6SHong Zhang   if (jok) {
397cb94ee6SHong Zhang     ierr     = MatCopy(cvode->pmat,Jac,str);CHKERRQ(ierr);
407cb94ee6SHong Zhang     *jcurPtr = FALSE;
417cb94ee6SHong Zhang   } else {
427cb94ee6SHong Zhang     /* make PETSc vector yy point to SUNDIALS vector y */
437cb94ee6SHong Zhang     y_data = (PetscScalar *) N_VGetArrayPointer(y);
447cb94ee6SHong Zhang     ierr   = VecPlaceArray(yy,y_data); CHKERRQ(ierr);
454ac7836bSHong Zhang 
467cb94ee6SHong Zhang     /* compute the Jacobian */
477cb94ee6SHong Zhang     ierr = TSComputeRHSJacobian(ts,ts->ptime,yy,&Jac,&Jac,&str);CHKERRQ(ierr);
487cb94ee6SHong Zhang     ierr = VecResetArray(yy); CHKERRQ(ierr);
494ac7836bSHong Zhang 
507cb94ee6SHong Zhang     /* copy the Jacobian matrix */
517cb94ee6SHong Zhang     if (!cvode->pmat) {
527cb94ee6SHong Zhang       ierr = MatDuplicate(Jac,MAT_COPY_VALUES,&cvode->pmat);CHKERRQ(ierr);
537cb94ee6SHong Zhang       ierr = PetscLogObjectParent(ts,cvode->pmat);CHKERRQ(ierr);
542c823083SHong Zhang     } else {
557cb94ee6SHong Zhang       ierr = MatCopy(Jac,cvode->pmat,str);CHKERRQ(ierr);
567cb94ee6SHong Zhang     }
577cb94ee6SHong Zhang     *jcurPtr = TRUE;
587cb94ee6SHong Zhang   }
597cb94ee6SHong Zhang 
607cb94ee6SHong Zhang   /* construct I-gamma*Jac  */
617cb94ee6SHong Zhang   gm   = -_gamma;
627cb94ee6SHong Zhang   ierr = MatScale(Jac,gm);CHKERRQ(ierr);
637cb94ee6SHong Zhang   ierr = MatShift(Jac,one);CHKERRQ(ierr);
647cb94ee6SHong Zhang 
657cb94ee6SHong Zhang   ierr = PCSetOperators(pc,Jac,Jac,str);CHKERRQ(ierr);
667cb94ee6SHong Zhang   PetscFunctionReturn(0);
677cb94ee6SHong Zhang }
687cb94ee6SHong Zhang 
697cb94ee6SHong Zhang /*
707cb94ee6SHong Zhang      TSPSolve_Sundials -  routine that we provide to Sundials that applies the preconditioner.
717cb94ee6SHong Zhang */
727cb94ee6SHong Zhang #undef __FUNCT__
737cb94ee6SHong Zhang #define __FUNCT__ "TSPSolve_Sundials"
744ac7836bSHong Zhang PetscErrorCode TSPSolve_Sundials(realtype tn,N_Vector y,N_Vector fy,N_Vector r,N_Vector z,
754ac7836bSHong Zhang                                  realtype _gamma,realtype delta,int lr,void *P_data,N_Vector vtemp)
767cb94ee6SHong Zhang {
777cb94ee6SHong Zhang   TS              ts = (TS) P_data;
787cb94ee6SHong Zhang   TS_Sundials     *cvode = (TS_Sundials*)ts->data;
797cb94ee6SHong Zhang   PC              pc = cvode->pc;
807cb94ee6SHong Zhang   Vec             rr = cvode->w1,zz = cvode->w2;
817cb94ee6SHong Zhang   PetscErrorCode  ierr;
827cb94ee6SHong Zhang   PetscScalar     *r_data,*z_data;
837cb94ee6SHong Zhang 
847cb94ee6SHong Zhang   PetscFunctionBegin;
857cb94ee6SHong Zhang   /* Make the PETSc work vectors rr and zz point to the arrays in the SUNDIALS vectors r and z respectively*/
867cb94ee6SHong Zhang   r_data  = (PetscScalar *) N_VGetArrayPointer(r);
877cb94ee6SHong Zhang   z_data  = (PetscScalar *) N_VGetArrayPointer(z);
887cb94ee6SHong Zhang   ierr = VecPlaceArray(rr,r_data); CHKERRQ(ierr);
897cb94ee6SHong Zhang   ierr = VecPlaceArray(zz,z_data); CHKERRQ(ierr);
904ac7836bSHong Zhang 
917cb94ee6SHong Zhang   /* Solve the Px=r and put the result in zz */
927cb94ee6SHong Zhang   ierr = PCApply(pc,rr,zz); CHKERRQ(ierr);
937cb94ee6SHong Zhang   ierr = VecResetArray(rr); CHKERRQ(ierr);
947cb94ee6SHong Zhang   ierr = VecResetArray(zz); CHKERRQ(ierr);
957cb94ee6SHong Zhang   PetscFunctionReturn(0);
967cb94ee6SHong Zhang }
977cb94ee6SHong Zhang 
987cb94ee6SHong Zhang /*
997cb94ee6SHong Zhang         TSFunction_Sundials - routine that we provide to Sundials that applies the right hand side.
1007cb94ee6SHong Zhang */
1017cb94ee6SHong Zhang #undef __FUNCT__
1027cb94ee6SHong Zhang #define __FUNCT__ "TSFunction_Sundials"
1034ac7836bSHong Zhang int TSFunction_Sundials(realtype t,N_Vector y,N_Vector ydot,void *ctx)
1047cb94ee6SHong Zhang {
1057cb94ee6SHong Zhang   TS              ts = (TS) ctx;
1067adad957SLisandro Dalcin   MPI_Comm        comm = ((PetscObject)ts)->comm;
1077cb94ee6SHong Zhang   TS_Sundials     *cvode = (TS_Sundials*)ts->data;
1087cb94ee6SHong Zhang   Vec             yy = cvode->w1,yyd = cvode->w2;
1097cb94ee6SHong Zhang   PetscScalar     *y_data,*ydot_data;
1107cb94ee6SHong Zhang   PetscErrorCode  ierr;
1117cb94ee6SHong Zhang 
1127cb94ee6SHong Zhang   PetscFunctionBegin;
1135ff03cf7SDinesh Kaushik   /* Make the PETSc work vectors yy and yyd point to the arrays in the SUNDIALS vectors y and ydot respectively*/
1147cb94ee6SHong Zhang   y_data     = (PetscScalar *) N_VGetArrayPointer(y);
1157cb94ee6SHong Zhang   ydot_data  = (PetscScalar *) N_VGetArrayPointer(ydot);
1164ac7836bSHong Zhang   ierr = VecPlaceArray(yy,y_data);CHKERRABORT(comm,ierr);
1174ac7836bSHong Zhang   ierr = VecPlaceArray(yyd,ydot_data); CHKERRABORT(comm,ierr);
1184ac7836bSHong Zhang 
1197cb94ee6SHong Zhang   /* now compute the right hand side function */
1207cb94ee6SHong Zhang   ierr = TSComputeRHSFunction(ts,t,yy,yyd); CHKERRABORT(comm,ierr);
1217cb94ee6SHong Zhang   ierr = VecResetArray(yy); CHKERRABORT(comm,ierr);
1227cb94ee6SHong Zhang   ierr = VecResetArray(yyd); CHKERRABORT(comm,ierr);
1234ac7836bSHong Zhang   PetscFunctionReturn(0);
1247cb94ee6SHong Zhang }
1257cb94ee6SHong Zhang 
1267cb94ee6SHong Zhang /*
1277cb94ee6SHong Zhang        TSStep_Sundials_Nonlinear - Calls Sundials to integrate the ODE.
1287cb94ee6SHong Zhang */
1297cb94ee6SHong Zhang #undef __FUNCT__
1307cb94ee6SHong Zhang #define __FUNCT__ "TSStep_Sundials_Nonlinear"
1317cb94ee6SHong Zhang PetscErrorCode TSStep_Sundials_Nonlinear(TS ts,int *steps,double *time)
1327cb94ee6SHong Zhang {
1337cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
1347cb94ee6SHong Zhang   Vec            sol = ts->vec_sol;
1357cb94ee6SHong Zhang   PetscErrorCode ierr;
1365d47aee6SHong Zhang   PetscInt       i,max_steps = ts->max_steps,flag;
1379f94935aSHong Zhang   long int       its,nsteps;
1387cb94ee6SHong Zhang   realtype       t,tout;
1397cb94ee6SHong Zhang   PetscScalar    *y_data;
1407cb94ee6SHong Zhang   void           *mem;
1417cb94ee6SHong Zhang 
1427cb94ee6SHong Zhang   PetscFunctionBegin;
14316016685SHong Zhang   mem  = cvode->mem;
1447cb94ee6SHong Zhang   tout = ts->max_time;
1457cb94ee6SHong Zhang   ierr = VecGetArray(ts->vec_sol,&y_data);CHKERRQ(ierr);
1467cb94ee6SHong Zhang   N_VSetArrayPointer((realtype *)y_data,cvode->y);
1477cb94ee6SHong Zhang   ierr = VecRestoreArray(ts->vec_sol,PETSC_NULL);CHKERRQ(ierr);
1487cb94ee6SHong Zhang   for (i = 0; i < max_steps; i++) {
1497cb94ee6SHong Zhang     if (ts->ptime >= ts->max_time) break;
1503f2090d5SJed Brown     ierr = TSPreStep(ts);CHKERRQ(ierr);
1512bfc04deSHong Zhang     if (cvode->monitorstep){
15228adb3f7SHong Zhang       flag = CVode(mem,tout,cvode->y,&t,CV_ONE_STEP);
1532bfc04deSHong Zhang     } else {
1542bfc04deSHong Zhang       flag = CVode(mem,tout,cvode->y,&t,CV_NORMAL);
1552bfc04deSHong Zhang     }
1569f94935aSHong Zhang 
1579f94935aSHong Zhang     if (flag){ /* display error message */
1589f94935aSHong Zhang       switch (flag){
1599f94935aSHong Zhang       case CV_ILL_INPUT:
1609f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_ILL_INPUT");
1619f94935aSHong Zhang         break;
1629f94935aSHong Zhang       case CV_TOO_CLOSE:
1639f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_CLOSE");
1649f94935aSHong Zhang         break;
1653c7fefeeSJed Brown       case CV_TOO_MUCH_WORK: {
1669f94935aSHong Zhang         PetscReal      tcur;
1679f94935aSHong Zhang         ierr = CVodeGetNumSteps(mem,&nsteps);CHKERRQ(ierr);
1689f94935aSHong Zhang         ierr = CVodeGetCurrentTime(mem,&tcur);CHKERRQ(ierr);
1699f94935aSHong Zhang         SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_MUCH_WORK. At t=%G, nsteps %D exceeds mxstep %D. Increase '-ts_max_steps <>' or modify TSSetDuration()",tcur,nsteps,ts->max_steps);
1703c7fefeeSJed Brown       } break;
1719f94935aSHong Zhang       case CV_TOO_MUCH_ACC:
1729f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_MUCH_ACC");
1739f94935aSHong Zhang         break;
1749f94935aSHong Zhang       case CV_ERR_FAILURE:
1759f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_ERR_FAILURE");
1769f94935aSHong Zhang         break;
1779f94935aSHong Zhang       case CV_CONV_FAILURE:
1789f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_CONV_FAILURE");
1799f94935aSHong Zhang         break;
1809f94935aSHong Zhang       case CV_LINIT_FAIL:
1819f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LINIT_FAIL");
1829f94935aSHong Zhang         break;
1839f94935aSHong Zhang       case CV_LSETUP_FAIL:
1849f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LSETUP_FAIL");
1859f94935aSHong Zhang         break;
1869f94935aSHong Zhang       case CV_LSOLVE_FAIL:
1879f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LSOLVE_FAIL");
1889f94935aSHong Zhang         break;
1899f94935aSHong Zhang       case CV_RHSFUNC_FAIL:
1909f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_RHSFUNC_FAIL");
1919f94935aSHong Zhang         break;
1929f94935aSHong Zhang       case CV_FIRST_RHSFUNC_ERR:
1939f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_FIRST_RHSFUNC_ERR");
1949f94935aSHong Zhang         break;
1959f94935aSHong Zhang       case CV_REPTD_RHSFUNC_ERR:
1969f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_REPTD_RHSFUNC_ERR");
1979f94935aSHong Zhang         break;
1989f94935aSHong Zhang       case CV_UNREC_RHSFUNC_ERR:
1999f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_UNREC_RHSFUNC_ERR");
2009f94935aSHong Zhang         break;
2019f94935aSHong Zhang       case CV_RTFUNC_FAIL:
2029f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_RTFUNC_FAIL");
2039f94935aSHong Zhang         break;
2049f94935aSHong Zhang       default:
2059f94935aSHong Zhang         SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, flag %d",flag);
2069f94935aSHong Zhang       }
2079f94935aSHong Zhang     }
2089f94935aSHong Zhang 
2097cb94ee6SHong Zhang     if (t > ts->max_time && cvode->exact_final_time) {
2107cb94ee6SHong Zhang       /* interpolate to final requested time */
2117cb94ee6SHong Zhang       ierr = CVodeGetDky(mem,tout,0,cvode->y);CHKERRQ(ierr);
2127cb94ee6SHong Zhang       t = tout;
2137cb94ee6SHong Zhang     }
2147cb94ee6SHong Zhang     ts->time_step = t - ts->ptime;
2157cb94ee6SHong Zhang     ts->ptime     = t;
2167cb94ee6SHong Zhang 
2177cb94ee6SHong Zhang     /* copy the solution from cvode->y to cvode->update and sol */
2187cb94ee6SHong Zhang     ierr = VecPlaceArray(cvode->w1,y_data); CHKERRQ(ierr);
2197cb94ee6SHong Zhang     ierr = VecCopy(cvode->w1,cvode->update);CHKERRQ(ierr);
2207cb94ee6SHong Zhang     ierr = VecResetArray(cvode->w1); CHKERRQ(ierr);
2217cb94ee6SHong Zhang     ierr = VecCopy(cvode->update,sol);CHKERRQ(ierr);
2227cb94ee6SHong Zhang     ierr = CVodeGetNumNonlinSolvIters(mem,&its);CHKERRQ(ierr);
2237cb94ee6SHong Zhang     ts->nonlinear_its = its;
2244ac7836bSHong Zhang     ierr = CVSpilsGetNumLinIters(mem, &its);
2257cb94ee6SHong Zhang     ts->linear_its = its;
2267cb94ee6SHong Zhang     ts->steps++;
2273f2090d5SJed Brown     ierr = TSPostStep(ts);CHKERRQ(ierr);
2287cb94ee6SHong Zhang     ierr = TSMonitor(ts,ts->steps,t,sol);CHKERRQ(ierr);
2297cb94ee6SHong Zhang   }
2309f94935aSHong Zhang   ierr = CVodeGetNumSteps(mem,&nsteps);CHKERRQ(ierr);
2319f94935aSHong Zhang   *steps = nsteps;
2327cb94ee6SHong Zhang   *time  = t;
2337cb94ee6SHong Zhang   PetscFunctionReturn(0);
2347cb94ee6SHong Zhang }
2357cb94ee6SHong Zhang 
2367cb94ee6SHong Zhang #undef __FUNCT__
2377cb94ee6SHong Zhang #define __FUNCT__ "TSDestroy_Sundials"
2387cb94ee6SHong Zhang PetscErrorCode TSDestroy_Sundials(TS ts)
2397cb94ee6SHong Zhang {
2407cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
2417cb94ee6SHong Zhang   PetscErrorCode ierr;
2427cb94ee6SHong Zhang 
2437cb94ee6SHong Zhang   PetscFunctionBegin;
2447cb94ee6SHong Zhang   if (cvode->pmat)   {ierr = MatDestroy(cvode->pmat);CHKERRQ(ierr);}
2457cb94ee6SHong Zhang   if (cvode->pc)     {ierr = PCDestroy(cvode->pc);CHKERRQ(ierr);}
2467cb94ee6SHong Zhang   if (cvode->update) {ierr = VecDestroy(cvode->update);CHKERRQ(ierr);}
2477cb94ee6SHong Zhang   if (cvode->func)   {ierr = VecDestroy(cvode->func);CHKERRQ(ierr);}
2487cb94ee6SHong Zhang   if (cvode->rhs)    {ierr = VecDestroy(cvode->rhs);CHKERRQ(ierr);}
2497cb94ee6SHong Zhang   if (cvode->w1)     {ierr = VecDestroy(cvode->w1);CHKERRQ(ierr);}
2507cb94ee6SHong Zhang   if (cvode->w2)     {ierr = VecDestroy(cvode->w2);CHKERRQ(ierr);}
251a07356b8SSatish Balay   ierr = MPI_Comm_free(&(cvode->comm_sundials));CHKERRQ(ierr);
2522c823083SHong Zhang   if (cvode->mem) {CVodeFree(&cvode->mem);}
2537cb94ee6SHong Zhang   ierr = PetscFree(cvode);CHKERRQ(ierr);
2547cb94ee6SHong Zhang   PetscFunctionReturn(0);
2557cb94ee6SHong Zhang }
2567cb94ee6SHong Zhang 
2577cb94ee6SHong Zhang #undef __FUNCT__
2587cb94ee6SHong Zhang #define __FUNCT__ "TSSetUp_Sundials_Nonlinear"
2597cb94ee6SHong Zhang PetscErrorCode TSSetUp_Sundials_Nonlinear(TS ts)
2607cb94ee6SHong Zhang {
2617cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
2627cb94ee6SHong Zhang   PetscErrorCode ierr;
26316016685SHong Zhang   PetscInt       glosize,locsize,i,flag;
2647cb94ee6SHong Zhang   PetscScalar    *y_data,*parray;
26516016685SHong Zhang   void           *mem;
26616016685SHong Zhang   const PCType   pctype;
267ace3abfcSBarry Smith   PetscBool      pcnone;
26816016685SHong Zhang   Vec            sol = ts->vec_sol;
2697cb94ee6SHong Zhang 
2707cb94ee6SHong Zhang   PetscFunctionBegin;
2717cb94ee6SHong Zhang   ierr = PCSetFromOptions(cvode->pc);CHKERRQ(ierr);
2729f94935aSHong Zhang 
2737cb94ee6SHong Zhang   /* get the vector size */
2747cb94ee6SHong Zhang   ierr = VecGetSize(ts->vec_sol,&glosize);CHKERRQ(ierr);
2757cb94ee6SHong Zhang   ierr = VecGetLocalSize(ts->vec_sol,&locsize);CHKERRQ(ierr);
2767cb94ee6SHong Zhang 
2777cb94ee6SHong Zhang   /* allocate the memory for N_Vec y */
278a07356b8SSatish Balay   cvode->y = N_VNew_Parallel(cvode->comm_sundials,locsize,glosize);
279e32f2f54SBarry Smith   if (!cvode->y) SETERRQ(PETSC_COMM_SELF,1,"cvode->y is not allocated");
2807cb94ee6SHong Zhang 
28128adb3f7SHong Zhang   /* initialize N_Vec y: copy ts->vec_sol to cvode->y */
2827cb94ee6SHong Zhang   ierr = VecGetArray(ts->vec_sol,&parray);CHKERRQ(ierr);
2837cb94ee6SHong Zhang   y_data = (PetscScalar *) N_VGetArrayPointer(cvode->y);
2847cb94ee6SHong Zhang   for (i = 0; i < locsize; i++) y_data[i] = parray[i];
2857cb94ee6SHong Zhang   /*ierr = PetscMemcpy(y_data,parray,locsize*sizeof(PETSC_SCALAR)); CHKERRQ(ierr);*/
2867cb94ee6SHong Zhang   ierr = VecRestoreArray(ts->vec_sol,PETSC_NULL);CHKERRQ(ierr);
2877cb94ee6SHong Zhang   ierr = VecDuplicate(ts->vec_sol,&cvode->update);CHKERRQ(ierr);
2887cb94ee6SHong Zhang   ierr = VecDuplicate(ts->vec_sol,&cvode->func);CHKERRQ(ierr);
2897cb94ee6SHong Zhang   ierr = PetscLogObjectParent(ts,cvode->update);CHKERRQ(ierr);
2907cb94ee6SHong Zhang   ierr = PetscLogObjectParent(ts,cvode->func);CHKERRQ(ierr);
2917cb94ee6SHong Zhang 
2927cb94ee6SHong Zhang   /*
2937cb94ee6SHong Zhang     Create work vectors for the TSPSolve_Sundials() routine. Note these are
2947cb94ee6SHong Zhang     allocated with zero space arrays because the actual array space is provided
2957cb94ee6SHong Zhang     by Sundials and set using VecPlaceArray().
2967cb94ee6SHong Zhang   */
2977adad957SLisandro Dalcin   ierr = VecCreateMPIWithArray(((PetscObject)ts)->comm,locsize,PETSC_DECIDE,0,&cvode->w1);CHKERRQ(ierr);
2987adad957SLisandro Dalcin   ierr = VecCreateMPIWithArray(((PetscObject)ts)->comm,locsize,PETSC_DECIDE,0,&cvode->w2);CHKERRQ(ierr);
2997cb94ee6SHong Zhang   ierr = PetscLogObjectParent(ts,cvode->w1);CHKERRQ(ierr);
3007cb94ee6SHong Zhang   ierr = PetscLogObjectParent(ts,cvode->w2);CHKERRQ(ierr);
30116016685SHong Zhang 
30216016685SHong Zhang   /* Call CVodeCreate to create the solver memory and the use of a Newton iteration */
30316016685SHong Zhang   mem = CVodeCreate(cvode->cvode_type, CV_NEWTON);
304e32f2f54SBarry Smith   if (!mem) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"CVodeCreate() fails");
30516016685SHong Zhang   cvode->mem = mem;
30616016685SHong Zhang 
30716016685SHong Zhang   /* Set the pointer to user-defined data */
30816016685SHong Zhang   flag = CVodeSetUserData(mem, ts);
309e32f2f54SBarry Smith   if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeSetUserData() fails");
31016016685SHong Zhang 
311fc6b9e64SJed Brown   /* Sundials may choose to use a smaller initial step, but will never use a larger step. */
312fc6b9e64SJed Brown   flag = CVodeSetInitStep(mem,(realtype)ts->initial_time_step);
313fc6b9e64SJed Brown   if (flag) SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetInitStep() failed");
314f1cd61daSJed Brown   if (cvode->mindt > 0) {
315f1cd61daSJed Brown     flag = CVodeSetMinStep(mem,(realtype)cvode->mindt);
3169f94935aSHong Zhang     if (flag){
3179f94935aSHong Zhang       if (flag == CV_MEM_NULL){
3189f94935aSHong Zhang         SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed, cvode_mem pointer is NULL");
3199f94935aSHong Zhang       } else if (flag == CV_ILL_INPUT){
3209f94935aSHong Zhang         SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed, hmin is nonpositive or it exceeds the maximum allowable step size");
3219f94935aSHong Zhang       } else {
3229f94935aSHong Zhang         SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed");
3239f94935aSHong Zhang       }
3249f94935aSHong Zhang     }
325f1cd61daSJed Brown   }
326f1cd61daSJed Brown   if (cvode->maxdt > 0) {
327f1cd61daSJed Brown     flag = CVodeSetMaxStep(mem,(realtype)cvode->maxdt);
328f1cd61daSJed Brown     if (flag) SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMaxStep() failed");
329f1cd61daSJed Brown   }
330f1cd61daSJed Brown 
33116016685SHong Zhang   /* Call CVodeInit to initialize the integrator memory and specify the
33216016685SHong Zhang    * user's right hand side function in u'=f(t,u), the inital time T0, and
33316016685SHong Zhang    * the initial dependent variable vector cvode->y */
33416016685SHong Zhang   flag = CVodeInit(mem,TSFunction_Sundials,ts->ptime,cvode->y);
33516016685SHong Zhang   if (flag){
336e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeInit() fails, flag %d",flag);
33716016685SHong Zhang   }
33816016685SHong Zhang 
3399f94935aSHong Zhang   /* specifies scalar relative and absolute tolerances */
34016016685SHong Zhang   flag = CVodeSStolerances(mem,cvode->reltol,cvode->abstol);
34116016685SHong Zhang   if (flag){
342e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeSStolerances() fails, flag %d",flag);
34316016685SHong Zhang   }
34416016685SHong Zhang 
3459f94935aSHong Zhang   /* Specify max num of steps to be taken by cvode in its attempt to reach the next output time */
3469f94935aSHong Zhang   flag = CVodeSetMaxNumSteps(mem,ts->max_steps);
34716016685SHong Zhang   ierr = TSMonitor(ts,ts->steps,ts->ptime,sol);CHKERRQ(ierr);
34816016685SHong Zhang 
34916016685SHong Zhang   /* call CVSpgmr to use GMRES as the linear solver.        */
35016016685SHong Zhang   /* setup the ode integrator with the given preconditioner */
35116016685SHong Zhang   ierr = PCGetType(cvode->pc,&pctype);CHKERRQ(ierr);
35216016685SHong Zhang   ierr = PetscTypeCompare((PetscObject)cvode->pc,PCNONE,&pcnone);CHKERRQ(ierr);
35316016685SHong Zhang   if (pcnone){
35416016685SHong Zhang     flag  = CVSpgmr(mem,PREC_NONE,0);
355e32f2f54SBarry Smith     if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmr() fails, flag %d",flag);
35616016685SHong Zhang   } else {
35716016685SHong Zhang     flag  = CVSpgmr(mem,PREC_LEFT,0);
358e32f2f54SBarry Smith     if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmr() fails, flag %d",flag);
35916016685SHong Zhang 
36016016685SHong Zhang     /* Set preconditioner and solve routines Precond and PSolve,
36116016685SHong Zhang      and the pointer to the user-defined block data */
36216016685SHong Zhang     flag = CVSpilsSetPreconditioner(mem,TSPrecond_Sundials,TSPSolve_Sundials);
363e32f2f54SBarry Smith     if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpilsSetPreconditioner() fails, flag %d", flag);
36416016685SHong Zhang   }
36516016685SHong Zhang 
36616016685SHong Zhang   flag = CVSpilsSetGSType(mem, MODIFIED_GS);
367e32f2f54SBarry Smith   if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmrSetGSType() fails, flag %d",flag);
3687cb94ee6SHong Zhang   PetscFunctionReturn(0);
3697cb94ee6SHong Zhang }
3707cb94ee6SHong Zhang 
3716fadb2cdSHong Zhang /* type of CVODE linear multistep method */
372dfcd32c8SHong Zhang const char *TSSundialsLmmTypes[] = {"","adams","bdf","TSSundialsLmmType","SUNDIALS_",0};
3736fadb2cdSHong Zhang /* type of G-S orthogonalization used by CVODE linear solver */
374dfcd32c8SHong Zhang const char *TSSundialsGramSchmidtTypes[] = {"","modified","classical","TSSundialsGramSchmidtType","SUNDIALS_",0};
375a04cf4d8SBarry Smith 
3767cb94ee6SHong Zhang #undef __FUNCT__
3777cb94ee6SHong Zhang #define __FUNCT__ "TSSetFromOptions_Sundials_Nonlinear"
3787cb94ee6SHong Zhang PetscErrorCode TSSetFromOptions_Sundials_Nonlinear(TS ts)
3797cb94ee6SHong Zhang {
3807cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
3817cb94ee6SHong Zhang   PetscErrorCode ierr;
3827cb94ee6SHong Zhang   int            indx;
383ace3abfcSBarry Smith   PetscBool      flag;
3847cb94ee6SHong Zhang 
3857cb94ee6SHong Zhang   PetscFunctionBegin;
3867cb94ee6SHong Zhang   ierr = PetscOptionsHead("SUNDIALS ODE solver options");CHKERRQ(ierr);
3876fadb2cdSHong Zhang     ierr = PetscOptionsEList("-ts_sundials_type","Scheme","TSSundialsSetType",TSSundialsLmmTypes,3,TSSundialsLmmTypes[cvode->cvode_type],&indx,&flag);CHKERRQ(ierr);
3887cb94ee6SHong Zhang     if (flag) {
3896fadb2cdSHong Zhang       ierr = TSSundialsSetType(ts,(TSSundialsLmmType)indx);CHKERRQ(ierr);
3907cb94ee6SHong Zhang     }
3916fadb2cdSHong Zhang     ierr = PetscOptionsEList("-ts_sundials_gramschmidt_type","Type of orthogonalization","TSSundialsSetGramSchmidtType",TSSundialsGramSchmidtTypes,3,TSSundialsGramSchmidtTypes[cvode->gtype],&indx,&flag);CHKERRQ(ierr);
3927cb94ee6SHong Zhang     if (flag) {
3937cb94ee6SHong Zhang       ierr = TSSundialsSetGramSchmidtType(ts,(TSSundialsGramSchmidtType)indx);CHKERRQ(ierr);
3947cb94ee6SHong Zhang     }
3957cb94ee6SHong Zhang     ierr = PetscOptionsReal("-ts_sundials_atol","Absolute tolerance for convergence","TSSundialsSetTolerance",cvode->abstol,&cvode->abstol,PETSC_NULL);CHKERRQ(ierr);
3967cb94ee6SHong Zhang     ierr = PetscOptionsReal("-ts_sundials_rtol","Relative tolerance for convergence","TSSundialsSetTolerance",cvode->reltol,&cvode->reltol,PETSC_NULL);CHKERRQ(ierr);
397f1cd61daSJed Brown     ierr = PetscOptionsReal("-ts_sundials_mindt","Minimum step size","TSSundialsSetMinTimeStep",cvode->mindt,&cvode->mindt,PETSC_NULL);CHKERRQ(ierr);
398f1cd61daSJed Brown     ierr = PetscOptionsReal("-ts_sundials_maxdt","Maximum step size","TSSundialsSetMaxTimeStep",cvode->maxdt,&cvode->maxdt,PETSC_NULL);CHKERRQ(ierr);
3997cb94ee6SHong Zhang     ierr = PetscOptionsReal("-ts_sundials_linear_tolerance","Convergence tolerance for linear solve","TSSundialsSetLinearTolerance",cvode->linear_tol,&cvode->linear_tol,&flag);CHKERRQ(ierr);
4007cb94ee6SHong Zhang     ierr = PetscOptionsInt("-ts_sundials_gmres_restart","Number of GMRES orthogonalization directions","TSSundialsSetGMRESRestart",cvode->restart,&cvode->restart,&flag);CHKERRQ(ierr);
401*acfcf0e5SJed Brown     ierr = PetscOptionsBool("-ts_sundials_exact_final_time","Interpolate output to stop exactly at the final time","TSSundialsSetExactFinalTime",cvode->exact_final_time,&cvode->exact_final_time,PETSC_NULL);CHKERRQ(ierr);
402*acfcf0e5SJed Brown     ierr = PetscOptionsBool("-ts_sundials_monitor_steps","Monitor SUNDIALS internel steps","TSSundialsMonitorInternalSteps",cvode->monitorstep,&cvode->monitorstep,PETSC_NULL);CHKERRQ(ierr);
4037cb94ee6SHong Zhang   ierr = PetscOptionsTail();CHKERRQ(ierr);
4047cb94ee6SHong Zhang   PetscFunctionReturn(0);
4057cb94ee6SHong Zhang }
4067cb94ee6SHong Zhang 
4077cb94ee6SHong Zhang #undef __FUNCT__
4087cb94ee6SHong Zhang #define __FUNCT__ "TSView_Sundials"
4097cb94ee6SHong Zhang PetscErrorCode TSView_Sundials(TS ts,PetscViewer viewer)
4107cb94ee6SHong Zhang {
4117cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
4127cb94ee6SHong Zhang   PetscErrorCode ierr;
4137cb94ee6SHong Zhang   char           *type;
4147cb94ee6SHong Zhang   char           atype[] = "Adams";
4157cb94ee6SHong Zhang   char           btype[] = "BDF: backward differentiation formula";
416ace3abfcSBarry Smith   PetscBool      iascii,isstring;
4172c823083SHong Zhang   long int       nsteps,its,nfevals,nlinsetups,nfails,itmp;
4182c823083SHong Zhang   PetscInt       qlast,qcur;
4195d47aee6SHong Zhang   PetscReal      hinused,hlast,hcur,tcur,tolsfac;
4207cb94ee6SHong Zhang 
4217cb94ee6SHong Zhang   PetscFunctionBegin;
4227cb94ee6SHong Zhang   if (cvode->cvode_type == SUNDIALS_ADAMS) {type = atype;}
4237cb94ee6SHong Zhang   else                                     {type = btype;}
4247cb94ee6SHong Zhang 
4252692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
4262692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSTRING,&isstring);CHKERRQ(ierr);
4277cb94ee6SHong Zhang   if (iascii) {
4287cb94ee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials integrater does not use SNES!\n");CHKERRQ(ierr);
4297cb94ee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials integrater type %s\n",type);CHKERRQ(ierr);
4307cb94ee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials abs tol %g rel tol %g\n",cvode->abstol,cvode->reltol);CHKERRQ(ierr);
4317cb94ee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials linear solver tolerance factor %g\n",cvode->linear_tol);CHKERRQ(ierr);
4327cb94ee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials GMRES max iterations (same as restart in SUNDIALS) %D\n",cvode->restart);CHKERRQ(ierr);
4337cb94ee6SHong Zhang     if (cvode->gtype == SUNDIALS_MODIFIED_GS) {
4347cb94ee6SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"Sundials using modified Gram-Schmidt for orthogonalization in GMRES\n");CHKERRQ(ierr);
4357cb94ee6SHong Zhang     } else {
4367cb94ee6SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"Sundials using unmodified (classical) Gram-Schmidt for orthogonalization in GMRES\n");CHKERRQ(ierr);
4377cb94ee6SHong Zhang     }
438f1cd61daSJed Brown     if (cvode->mindt > 0) {ierr = PetscViewerASCIIPrintf(viewer,"Sundials minimum time step %g\n",cvode->mindt);CHKERRQ(ierr);}
439f1cd61daSJed Brown     if (cvode->maxdt > 0) {ierr = PetscViewerASCIIPrintf(viewer,"Sundials maximum time step %g\n",cvode->maxdt);CHKERRQ(ierr);}
4402c823083SHong Zhang 
4415d47aee6SHong Zhang     /* Outputs from CVODE, CVSPILS */
4425d47aee6SHong Zhang     ierr = CVodeGetTolScaleFactor(cvode->mem,&tolsfac);CHKERRQ(ierr);
4435d47aee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials suggested factor for tolerance scaling %g\n",tolsfac);CHKERRQ(ierr);
4442c823083SHong Zhang     ierr = CVodeGetIntegratorStats(cvode->mem,&nsteps,&nfevals,
4452c823083SHong Zhang                                    &nlinsetups,&nfails,&qlast,&qcur,
4462c823083SHong Zhang                                    &hinused,&hlast,&hcur,&tcur);CHKERRQ(ierr);
4472c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials cumulative number of internal steps %D\n",nsteps);CHKERRQ(ierr);
4482c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of calls to rhs function %D\n",nfevals);CHKERRQ(ierr);
4492c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of calls to linear solver setup function %D\n",nlinsetups);CHKERRQ(ierr);
4502c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of error test failures %D\n",nfails);CHKERRQ(ierr);
4512c823083SHong Zhang 
4522c823083SHong Zhang     ierr = CVodeGetNonlinSolvStats(cvode->mem,&its,&nfails);CHKERRQ(ierr);
4532c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of nonlinear solver iterations %D\n",its);CHKERRQ(ierr);
4542c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of nonlinear convergence failure %D\n",nfails);CHKERRQ(ierr);
4552c823083SHong Zhang 
4562c823083SHong Zhang     ierr = CVSpilsGetNumLinIters(cvode->mem, &its);CHKERRQ(ierr); /* its = no. of calls to TSPrecond_Sundials() */
4572c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of linear iterations %D\n",its);CHKERRQ(ierr);
4582c823083SHong Zhang     ierr = CVSpilsGetNumConvFails(cvode->mem,&itmp);CHKERRQ(ierr);
4592c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of linear convergence failures %D\n",itmp);CHKERRQ(ierr);
4602c823083SHong Zhang     ierr = CVSpilsGetNumPrecEvals(cvode->mem,&itmp);CHKERRQ(ierr);
4612c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of preconditioner evaluations %D\n",itmp);CHKERRQ(ierr);
4622c823083SHong Zhang     ierr = CVSpilsGetNumPrecSolves(cvode->mem,&itmp);CHKERRQ(ierr);
4632c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of preconditioner solves %D\n",itmp);CHKERRQ(ierr);
4642c823083SHong Zhang     ierr = CVSpilsGetNumJtimesEvals(cvode->mem,&itmp);CHKERRQ(ierr);
4652c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of Jacobian-vector product evaluations %D\n",itmp);CHKERRQ(ierr);
4662c823083SHong Zhang     ierr = CVSpilsGetNumRhsEvals(cvode->mem,&itmp);CHKERRQ(ierr);
4672c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of rhs calls for finite diff. Jacobian-vector evals %D\n",itmp);CHKERRQ(ierr);
4687cb94ee6SHong Zhang   } else if (isstring) {
4697cb94ee6SHong Zhang     ierr = PetscViewerStringSPrintf(viewer,"Sundials type %s",type);CHKERRQ(ierr);
4707cb94ee6SHong Zhang   } else {
471e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by TS Sundials",((PetscObject)viewer)->type_name);
4727cb94ee6SHong Zhang   }
4737cb94ee6SHong Zhang   ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr);
4747cb94ee6SHong Zhang   ierr = PCView(cvode->pc,viewer);CHKERRQ(ierr);
4757cb94ee6SHong Zhang   ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
4767cb94ee6SHong Zhang   PetscFunctionReturn(0);
4777cb94ee6SHong Zhang }
4787cb94ee6SHong Zhang 
4797cb94ee6SHong Zhang 
4807cb94ee6SHong Zhang /* --------------------------------------------------------------------------*/
4817cb94ee6SHong Zhang EXTERN_C_BEGIN
4827cb94ee6SHong Zhang #undef __FUNCT__
4837cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetType_Sundials"
4846fadb2cdSHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetType_Sundials(TS ts,TSSundialsLmmType type)
4857cb94ee6SHong Zhang {
4867cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
4877cb94ee6SHong Zhang 
4887cb94ee6SHong Zhang   PetscFunctionBegin;
4897cb94ee6SHong Zhang   cvode->cvode_type = type;
4907cb94ee6SHong Zhang   PetscFunctionReturn(0);
4917cb94ee6SHong Zhang }
4927cb94ee6SHong Zhang EXTERN_C_END
4937cb94ee6SHong Zhang 
4947cb94ee6SHong Zhang EXTERN_C_BEGIN
4957cb94ee6SHong Zhang #undef __FUNCT__
4967cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGMRESRestart_Sundials"
4977cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetGMRESRestart_Sundials(TS ts,int restart)
4987cb94ee6SHong Zhang {
4997cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
5007cb94ee6SHong Zhang 
5017cb94ee6SHong Zhang   PetscFunctionBegin;
5027cb94ee6SHong Zhang   cvode->restart = restart;
5037cb94ee6SHong Zhang   PetscFunctionReturn(0);
5047cb94ee6SHong Zhang }
5057cb94ee6SHong Zhang EXTERN_C_END
5067cb94ee6SHong Zhang 
5077cb94ee6SHong Zhang EXTERN_C_BEGIN
5087cb94ee6SHong Zhang #undef __FUNCT__
5097cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetLinearTolerance_Sundials"
5107cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetLinearTolerance_Sundials(TS ts,double tol)
5117cb94ee6SHong Zhang {
5127cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
5137cb94ee6SHong Zhang 
5147cb94ee6SHong Zhang   PetscFunctionBegin;
5157cb94ee6SHong Zhang   cvode->linear_tol = tol;
5167cb94ee6SHong Zhang   PetscFunctionReturn(0);
5177cb94ee6SHong Zhang }
5187cb94ee6SHong Zhang EXTERN_C_END
5197cb94ee6SHong Zhang 
5207cb94ee6SHong Zhang EXTERN_C_BEGIN
5217cb94ee6SHong Zhang #undef __FUNCT__
5227cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGramSchmidtType_Sundials"
5237cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetGramSchmidtType_Sundials(TS ts,TSSundialsGramSchmidtType type)
5247cb94ee6SHong Zhang {
5257cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
5267cb94ee6SHong Zhang 
5277cb94ee6SHong Zhang   PetscFunctionBegin;
5287cb94ee6SHong Zhang   cvode->gtype = type;
5297cb94ee6SHong Zhang   PetscFunctionReturn(0);
5307cb94ee6SHong Zhang }
5317cb94ee6SHong Zhang EXTERN_C_END
5327cb94ee6SHong Zhang 
5337cb94ee6SHong Zhang EXTERN_C_BEGIN
5347cb94ee6SHong Zhang #undef __FUNCT__
5357cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetTolerance_Sundials"
5367cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetTolerance_Sundials(TS ts,double aabs,double rel)
5377cb94ee6SHong Zhang {
5387cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
5397cb94ee6SHong Zhang 
5407cb94ee6SHong Zhang   PetscFunctionBegin;
5417cb94ee6SHong Zhang   if (aabs != PETSC_DECIDE) cvode->abstol = aabs;
5427cb94ee6SHong Zhang   if (rel != PETSC_DECIDE)  cvode->reltol = rel;
5437cb94ee6SHong Zhang   PetscFunctionReturn(0);
5447cb94ee6SHong Zhang }
5457cb94ee6SHong Zhang EXTERN_C_END
5467cb94ee6SHong Zhang 
5477cb94ee6SHong Zhang EXTERN_C_BEGIN
5487cb94ee6SHong Zhang #undef __FUNCT__
549f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMinTimeStep_Sundials"
550f1cd61daSJed Brown PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetMinTimeStep_Sundials(TS ts,PetscReal mindt)
551f1cd61daSJed Brown {
552f1cd61daSJed Brown   TS_Sundials *cvode = (TS_Sundials*)ts->data;
553f1cd61daSJed Brown 
554f1cd61daSJed Brown   PetscFunctionBegin;
555f1cd61daSJed Brown   cvode->mindt = mindt;
556f1cd61daSJed Brown   PetscFunctionReturn(0);
557f1cd61daSJed Brown }
558f1cd61daSJed Brown EXTERN_C_END
559f1cd61daSJed Brown 
560f1cd61daSJed Brown EXTERN_C_BEGIN
561f1cd61daSJed Brown #undef __FUNCT__
562f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMaxTimeStep_Sundials"
563f1cd61daSJed Brown PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetMaxTimeStep_Sundials(TS ts,PetscReal maxdt)
564f1cd61daSJed Brown {
565f1cd61daSJed Brown   TS_Sundials *cvode = (TS_Sundials*)ts->data;
566f1cd61daSJed Brown 
567f1cd61daSJed Brown   PetscFunctionBegin;
568f1cd61daSJed Brown   cvode->maxdt = maxdt;
569f1cd61daSJed Brown   PetscFunctionReturn(0);
570f1cd61daSJed Brown }
571f1cd61daSJed Brown EXTERN_C_END
572f1cd61daSJed Brown 
573f1cd61daSJed Brown EXTERN_C_BEGIN
574f1cd61daSJed Brown #undef __FUNCT__
5757cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetPC_Sundials"
5767cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsGetPC_Sundials(TS ts,PC *pc)
5777cb94ee6SHong Zhang {
5787cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
5797cb94ee6SHong Zhang 
5807cb94ee6SHong Zhang   PetscFunctionBegin;
5817cb94ee6SHong Zhang   *pc = cvode->pc;
5827cb94ee6SHong Zhang   PetscFunctionReturn(0);
5837cb94ee6SHong Zhang }
5847cb94ee6SHong Zhang EXTERN_C_END
5857cb94ee6SHong Zhang 
5867cb94ee6SHong Zhang EXTERN_C_BEGIN
5877cb94ee6SHong Zhang #undef __FUNCT__
5887cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetIterations_Sundials"
5897cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsGetIterations_Sundials(TS ts,int *nonlin,int *lin)
5907cb94ee6SHong Zhang {
5917cb94ee6SHong Zhang   PetscFunctionBegin;
5922c823083SHong Zhang   if (nonlin) *nonlin = ts->nonlinear_its;
5932c823083SHong Zhang   if (lin)    *lin    = ts->linear_its;
5947cb94ee6SHong Zhang   PetscFunctionReturn(0);
5957cb94ee6SHong Zhang }
5967cb94ee6SHong Zhang EXTERN_C_END
5977cb94ee6SHong Zhang 
5987cb94ee6SHong Zhang EXTERN_C_BEGIN
5997cb94ee6SHong Zhang #undef __FUNCT__
6007cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetExactFinalTime_Sundials"
601ace3abfcSBarry Smith PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetExactFinalTime_Sundials(TS ts,PetscBool  s)
6027cb94ee6SHong Zhang {
6037cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
6047cb94ee6SHong Zhang 
6057cb94ee6SHong Zhang   PetscFunctionBegin;
6067cb94ee6SHong Zhang   cvode->exact_final_time = s;
6077cb94ee6SHong Zhang   PetscFunctionReturn(0);
6087cb94ee6SHong Zhang }
6097cb94ee6SHong Zhang EXTERN_C_END
6102bfc04deSHong Zhang 
6112bfc04deSHong Zhang EXTERN_C_BEGIN
6122bfc04deSHong Zhang #undef __FUNCT__
6132bfc04deSHong Zhang #define __FUNCT__ "TSSundialsMonitorInternalSteps_Sundials"
614ace3abfcSBarry Smith PetscErrorCode PETSCTS_DLLEXPORT TSSundialsMonitorInternalSteps_Sundials(TS ts,PetscBool  s)
6152bfc04deSHong Zhang {
6162bfc04deSHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
6172bfc04deSHong Zhang 
6182bfc04deSHong Zhang   PetscFunctionBegin;
6192bfc04deSHong Zhang   cvode->monitorstep = s;
6202bfc04deSHong Zhang   PetscFunctionReturn(0);
6212bfc04deSHong Zhang }
6222bfc04deSHong Zhang EXTERN_C_END
6237cb94ee6SHong Zhang /* -------------------------------------------------------------------------------------------*/
6247cb94ee6SHong Zhang 
6257cb94ee6SHong Zhang #undef __FUNCT__
6267cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetIterations"
6277cb94ee6SHong Zhang /*@C
6287cb94ee6SHong Zhang    TSSundialsGetIterations - Gets the number of nonlinear and linear iterations used so far by Sundials.
6297cb94ee6SHong Zhang 
6307cb94ee6SHong Zhang    Not Collective
6317cb94ee6SHong Zhang 
6327cb94ee6SHong Zhang    Input parameters:
6337cb94ee6SHong Zhang .    ts     - the time-step context
6347cb94ee6SHong Zhang 
6357cb94ee6SHong Zhang    Output Parameters:
6367cb94ee6SHong Zhang +   nonlin - number of nonlinear iterations
6377cb94ee6SHong Zhang -   lin    - number of linear iterations
6387cb94ee6SHong Zhang 
6397cb94ee6SHong Zhang    Level: advanced
6407cb94ee6SHong Zhang 
6417cb94ee6SHong Zhang    Notes:
6427cb94ee6SHong Zhang     These return the number since the creation of the TS object
6437cb94ee6SHong Zhang 
6447cb94ee6SHong Zhang .keywords: non-linear iterations, linear iterations
6457cb94ee6SHong Zhang 
6467cb94ee6SHong Zhang .seealso: TSSundialsSetType(), TSSundialsSetGMRESRestart(),
6477cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
6487cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
649f1cd61daSJed Brown           TSSundialsSetLinearTolerance(), TSSundialsGetPC(), TSSundialsSetExactFinalTime()
6507cb94ee6SHong Zhang 
6517cb94ee6SHong Zhang @*/
6527cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsGetIterations(TS ts,int *nonlin,int *lin)
6537cb94ee6SHong Zhang {
6544ac538c5SBarry Smith   PetscErrorCode ierr;
6557cb94ee6SHong Zhang 
6567cb94ee6SHong Zhang   PetscFunctionBegin;
6574ac538c5SBarry Smith   ierr = PetscUseMethod(ts,"TSSundialsGetIterations_C",(TS,int*,int*),(ts,nonlin,lin));CHKERRQ(ierr);
6587cb94ee6SHong Zhang   PetscFunctionReturn(0);
6597cb94ee6SHong Zhang }
6607cb94ee6SHong Zhang 
6617cb94ee6SHong Zhang #undef __FUNCT__
6627cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetType"
6637cb94ee6SHong Zhang /*@
6647cb94ee6SHong Zhang    TSSundialsSetType - Sets the method that Sundials will use for integration.
6657cb94ee6SHong Zhang 
6663f9fe445SBarry Smith    Logically Collective on TS
6677cb94ee6SHong Zhang 
6687cb94ee6SHong Zhang    Input parameters:
6697cb94ee6SHong Zhang +    ts     - the time-step context
6707cb94ee6SHong Zhang -    type   - one of  SUNDIALS_ADAMS or SUNDIALS_BDF
6717cb94ee6SHong Zhang 
6727cb94ee6SHong Zhang    Level: intermediate
6737cb94ee6SHong Zhang 
6747cb94ee6SHong Zhang .keywords: Adams, backward differentiation formula
6757cb94ee6SHong Zhang 
6767cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(),  TSSundialsSetGMRESRestart(),
6777cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
6787cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
6797cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(),
6807cb94ee6SHong Zhang           TSSundialsSetExactFinalTime()
6817cb94ee6SHong Zhang @*/
6826fadb2cdSHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetType(TS ts,TSSundialsLmmType type)
6837cb94ee6SHong Zhang {
6844ac538c5SBarry Smith   PetscErrorCode ierr;
6857cb94ee6SHong Zhang 
6867cb94ee6SHong Zhang   PetscFunctionBegin;
6874ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetType_C",(TS,TSSundialsLmmType),(ts,type));CHKERRQ(ierr);
6887cb94ee6SHong Zhang   PetscFunctionReturn(0);
6897cb94ee6SHong Zhang }
6907cb94ee6SHong Zhang 
6917cb94ee6SHong Zhang #undef __FUNCT__
6927cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGMRESRestart"
6937cb94ee6SHong Zhang /*@
6947cb94ee6SHong Zhang    TSSundialsSetGMRESRestart - Sets the dimension of the Krylov space used by
6957cb94ee6SHong Zhang        GMRES in the linear solver in SUNDIALS. SUNDIALS DOES NOT use restarted GMRES so
6967cb94ee6SHong Zhang        this is ALSO the maximum number of GMRES steps that will be used.
6977cb94ee6SHong Zhang 
6983f9fe445SBarry Smith    Logically Collective on TS
6997cb94ee6SHong Zhang 
7007cb94ee6SHong Zhang    Input parameters:
7017cb94ee6SHong Zhang +    ts      - the time-step context
7027cb94ee6SHong Zhang -    restart - number of direction vectors (the restart size).
7037cb94ee6SHong Zhang 
7047cb94ee6SHong Zhang    Level: advanced
7057cb94ee6SHong Zhang 
7067cb94ee6SHong Zhang .keywords: GMRES, restart
7077cb94ee6SHong Zhang 
7087cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(),
7097cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
7107cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
7117cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(),
7127cb94ee6SHong Zhang           TSSundialsSetExactFinalTime()
7137cb94ee6SHong Zhang 
7147cb94ee6SHong Zhang @*/
7157cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetGMRESRestart(TS ts,int restart)
7167cb94ee6SHong Zhang {
7174ac538c5SBarry Smith   PetscErrorCode ierr;
7187cb94ee6SHong Zhang 
7197cb94ee6SHong Zhang   PetscFunctionBegin;
720c5eb9154SBarry Smith   PetscValidLogicalCollectiveInt(ts,restart,2);
7214ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetGMRESRestart_C",(TS,int),(ts,restart));CHKERRQ(ierr);
7227cb94ee6SHong Zhang   PetscFunctionReturn(0);
7237cb94ee6SHong Zhang }
7247cb94ee6SHong Zhang 
7257cb94ee6SHong Zhang #undef __FUNCT__
7267cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetLinearTolerance"
7277cb94ee6SHong Zhang /*@
7287cb94ee6SHong Zhang    TSSundialsSetLinearTolerance - Sets the tolerance used to solve the linear
7297cb94ee6SHong Zhang        system by SUNDIALS.
7307cb94ee6SHong Zhang 
7313f9fe445SBarry Smith    Logically Collective on TS
7327cb94ee6SHong Zhang 
7337cb94ee6SHong Zhang    Input parameters:
7347cb94ee6SHong Zhang +    ts     - the time-step context
7357cb94ee6SHong Zhang -    tol    - the factor by which the tolerance on the nonlinear solver is
7367cb94ee6SHong Zhang              multiplied to get the tolerance on the linear solver, .05 by default.
7377cb94ee6SHong Zhang 
7387cb94ee6SHong Zhang    Level: advanced
7397cb94ee6SHong Zhang 
7407cb94ee6SHong Zhang .keywords: GMRES, linear convergence tolerance, SUNDIALS
7417cb94ee6SHong Zhang 
7427cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
7437cb94ee6SHong Zhang           TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
7447cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
7457cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(),
7467cb94ee6SHong Zhang           TSSundialsSetExactFinalTime()
7477cb94ee6SHong Zhang 
7487cb94ee6SHong Zhang @*/
7497cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetLinearTolerance(TS ts,double tol)
7507cb94ee6SHong Zhang {
7514ac538c5SBarry Smith   PetscErrorCode ierr;
7527cb94ee6SHong Zhang 
7537cb94ee6SHong Zhang   PetscFunctionBegin;
754c5eb9154SBarry Smith   PetscValidLogicalCollectiveReal(ts,tol,2);
7554ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetLinearTolerance_C",(TS,double),(ts,tol));CHKERRQ(ierr);
7567cb94ee6SHong Zhang   PetscFunctionReturn(0);
7577cb94ee6SHong Zhang }
7587cb94ee6SHong Zhang 
7597cb94ee6SHong Zhang #undef __FUNCT__
7607cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGramSchmidtType"
7617cb94ee6SHong Zhang /*@
7627cb94ee6SHong Zhang    TSSundialsSetGramSchmidtType - Sets type of orthogonalization used
7637cb94ee6SHong Zhang         in GMRES method by SUNDIALS linear solver.
7647cb94ee6SHong Zhang 
7653f9fe445SBarry Smith    Logically Collective on TS
7667cb94ee6SHong Zhang 
7677cb94ee6SHong Zhang    Input parameters:
7687cb94ee6SHong Zhang +    ts  - the time-step context
7697cb94ee6SHong Zhang -    type - either SUNDIALS_MODIFIED_GS or SUNDIALS_CLASSICAL_GS
7707cb94ee6SHong Zhang 
7717cb94ee6SHong Zhang    Level: advanced
7727cb94ee6SHong Zhang 
7737cb94ee6SHong Zhang .keywords: Sundials, orthogonalization
7747cb94ee6SHong Zhang 
7757cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
7767cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(),  TSSundialsSetTolerance(),
7777cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
7787cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(),
7797cb94ee6SHong Zhang           TSSundialsSetExactFinalTime()
7807cb94ee6SHong Zhang 
7817cb94ee6SHong Zhang @*/
7827cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetGramSchmidtType(TS ts,TSSundialsGramSchmidtType type)
7837cb94ee6SHong Zhang {
7844ac538c5SBarry Smith   PetscErrorCode ierr;
7857cb94ee6SHong Zhang 
7867cb94ee6SHong Zhang   PetscFunctionBegin;
7874ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetGramSchmidtType_C",(TS,TSSundialsGramSchmidtType),(ts,type));CHKERRQ(ierr);
7887cb94ee6SHong Zhang   PetscFunctionReturn(0);
7897cb94ee6SHong Zhang }
7907cb94ee6SHong Zhang 
7917cb94ee6SHong Zhang #undef __FUNCT__
7927cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetTolerance"
7937cb94ee6SHong Zhang /*@
7947cb94ee6SHong Zhang    TSSundialsSetTolerance - Sets the absolute and relative tolerance used by
7957cb94ee6SHong Zhang                          Sundials for error control.
7967cb94ee6SHong Zhang 
7973f9fe445SBarry Smith    Logically Collective on TS
7987cb94ee6SHong Zhang 
7997cb94ee6SHong Zhang    Input parameters:
8007cb94ee6SHong Zhang +    ts  - the time-step context
8017cb94ee6SHong Zhang .    aabs - the absolute tolerance
8027cb94ee6SHong Zhang -    rel - the relative tolerance
8037cb94ee6SHong Zhang 
8047cb94ee6SHong Zhang      See the Cvode/Sundials users manual for exact details on these parameters. Essentially
8057cb94ee6SHong Zhang     these regulate the size of the error for a SINGLE timestep.
8067cb94ee6SHong Zhang 
8077cb94ee6SHong Zhang    Level: intermediate
8087cb94ee6SHong Zhang 
8097cb94ee6SHong Zhang .keywords: Sundials, tolerance
8107cb94ee6SHong Zhang 
8117cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8127cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(),
8137cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8147cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(),
8157cb94ee6SHong Zhang           TSSundialsSetExactFinalTime()
8167cb94ee6SHong Zhang 
8177cb94ee6SHong Zhang @*/
8187cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetTolerance(TS ts,double aabs,double rel)
8197cb94ee6SHong Zhang {
8204ac538c5SBarry Smith   PetscErrorCode ierr;
8217cb94ee6SHong Zhang 
8227cb94ee6SHong Zhang   PetscFunctionBegin;
8234ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetTolerance_C",(TS,double,double),(ts,aabs,rel));CHKERRQ(ierr);
8247cb94ee6SHong Zhang   PetscFunctionReturn(0);
8257cb94ee6SHong Zhang }
8267cb94ee6SHong Zhang 
8277cb94ee6SHong Zhang #undef __FUNCT__
8287cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetPC"
8297cb94ee6SHong Zhang /*@
8307cb94ee6SHong Zhang    TSSundialsGetPC - Extract the PC context from a time-step context for Sundials.
8317cb94ee6SHong Zhang 
8327cb94ee6SHong Zhang    Input Parameter:
8337cb94ee6SHong Zhang .    ts - the time-step context
8347cb94ee6SHong Zhang 
8357cb94ee6SHong Zhang    Output Parameter:
8367cb94ee6SHong Zhang .    pc - the preconditioner context
8377cb94ee6SHong Zhang 
8387cb94ee6SHong Zhang    Level: advanced
8397cb94ee6SHong Zhang 
8407cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8417cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
8427cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8437cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance()
8447cb94ee6SHong Zhang @*/
8457cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSSundialsGetPC(TS ts,PC *pc)
8467cb94ee6SHong Zhang {
8474ac538c5SBarry Smith   PetscErrorCode ierr;
8487cb94ee6SHong Zhang 
8497cb94ee6SHong Zhang   PetscFunctionBegin;
8504ac538c5SBarry Smith   ierr = PetscUseMethod(ts,"TSSundialsGetPC_C",(TS,PC *),(ts,pc));CHKERRQ(ierr);
8517cb94ee6SHong Zhang   PetscFunctionReturn(0);
8527cb94ee6SHong Zhang }
8537cb94ee6SHong Zhang 
8547cb94ee6SHong Zhang #undef __FUNCT__
8557cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetExactFinalTime"
8567cb94ee6SHong Zhang /*@
8577cb94ee6SHong Zhang    TSSundialsSetExactFinalTime - Determines if Sundials interpolates solution to the
8587cb94ee6SHong Zhang       exact final time requested by the user or just returns it at the final time
8597cb94ee6SHong Zhang       it computed. (Defaults to true).
8607cb94ee6SHong Zhang 
8617cb94ee6SHong Zhang    Input Parameter:
8627cb94ee6SHong Zhang +   ts - the time-step context
8637cb94ee6SHong Zhang -   ft - PETSC_TRUE if interpolates, else PETSC_FALSE
8647cb94ee6SHong Zhang 
8657cb94ee6SHong Zhang    Level: beginner
8667cb94ee6SHong Zhang 
8677cb94ee6SHong Zhang .seealso:TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8687cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
8697cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8707cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC()
8717cb94ee6SHong Zhang @*/
872ace3abfcSBarry Smith PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetExactFinalTime(TS ts,PetscBool  ft)
8737cb94ee6SHong Zhang {
8744ac538c5SBarry Smith   PetscErrorCode ierr;
8757cb94ee6SHong Zhang 
8767cb94ee6SHong Zhang   PetscFunctionBegin;
8774ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetExactFinalTime_C",(TS,PetscBool),(ts,ft));CHKERRQ(ierr);
8787cb94ee6SHong Zhang   PetscFunctionReturn(0);
8797cb94ee6SHong Zhang }
8807cb94ee6SHong Zhang 
8812bfc04deSHong Zhang #undef __FUNCT__
882f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMinTimeStep"
883f1cd61daSJed Brown /*@
884f1cd61daSJed Brown    TSSundialsSetMinTimeStep - Smallest time step to be chosen by the adaptive controller.
885f1cd61daSJed Brown 
886f1cd61daSJed Brown    Input Parameter:
887f1cd61daSJed Brown +   ts - the time-step context
888f1cd61daSJed Brown -   mindt - lowest time step if positive, negative to deactivate
889f1cd61daSJed Brown 
890fc6b9e64SJed Brown    Note:
891fc6b9e64SJed Brown    Sundials will error if it is not possible to keep the estimated truncation error below
892fc6b9e64SJed Brown    the tolerance set with TSSundialsSetTolerance() without going below this step size.
893fc6b9e64SJed Brown 
894f1cd61daSJed Brown    Level: beginner
895f1cd61daSJed Brown 
896f1cd61daSJed Brown .seealso: TSSundialsSetType(), TSSundialsSetTolerance(),
897f1cd61daSJed Brown @*/
898f1cd61daSJed Brown PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetMinTimeStep(TS ts,PetscReal mindt)
899f1cd61daSJed Brown {
9004ac538c5SBarry Smith   PetscErrorCode ierr;
901f1cd61daSJed Brown 
902f1cd61daSJed Brown   PetscFunctionBegin;
9034ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetMinTimeStep_C",(TS,PetscReal),(ts,mindt));CHKERRQ(ierr);
904f1cd61daSJed Brown   PetscFunctionReturn(0);
905f1cd61daSJed Brown }
906f1cd61daSJed Brown 
907f1cd61daSJed Brown #undef __FUNCT__
908f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMaxTimeStep"
909f1cd61daSJed Brown /*@
910f1cd61daSJed Brown    TSSundialsSetMaxTimeStep - Largest time step to be chosen by the adaptive controller.
911f1cd61daSJed Brown 
912f1cd61daSJed Brown    Input Parameter:
913f1cd61daSJed Brown +   ts - the time-step context
914f1cd61daSJed Brown -   maxdt - lowest time step if positive, negative to deactivate
915f1cd61daSJed Brown 
916f1cd61daSJed Brown    Level: beginner
917f1cd61daSJed Brown 
918f1cd61daSJed Brown .seealso: TSSundialsSetType(), TSSundialsSetTolerance(),
919f1cd61daSJed Brown @*/
920f1cd61daSJed Brown PetscErrorCode PETSCTS_DLLEXPORT TSSundialsSetMaxTimeStep(TS ts,PetscReal maxdt)
921f1cd61daSJed Brown {
9224ac538c5SBarry Smith   PetscErrorCode ierr;
923f1cd61daSJed Brown 
924f1cd61daSJed Brown   PetscFunctionBegin;
9254ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetMaxTimeStep_C",(TS,PetscReal),(ts,maxdt));CHKERRQ(ierr);
926f1cd61daSJed Brown   PetscFunctionReturn(0);
927f1cd61daSJed Brown }
928f1cd61daSJed Brown 
929f1cd61daSJed Brown #undef __FUNCT__
9302bfc04deSHong Zhang #define __FUNCT__ "TSSundialsMonitorInternalSteps"
9312bfc04deSHong Zhang /*@
9322bfc04deSHong Zhang    TSSundialsMonitorInternalSteps - Monitor Sundials internal steps (Defaults to false).
9332bfc04deSHong Zhang 
9342bfc04deSHong Zhang    Input Parameter:
9352bfc04deSHong Zhang +   ts - the time-step context
9362bfc04deSHong Zhang -   ft - PETSC_TRUE if monitor, else PETSC_FALSE
9372bfc04deSHong Zhang 
9382bfc04deSHong Zhang    Level: beginner
9392bfc04deSHong Zhang 
9402bfc04deSHong Zhang .seealso:TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
9412bfc04deSHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
9422bfc04deSHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
9432bfc04deSHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC()
9442bfc04deSHong Zhang @*/
945ace3abfcSBarry Smith PetscErrorCode PETSCTS_DLLEXPORT TSSundialsMonitorInternalSteps(TS ts,PetscBool  ft)
9462bfc04deSHong Zhang {
9474ac538c5SBarry Smith   PetscErrorCode ierr;
9482bfc04deSHong Zhang 
9492bfc04deSHong Zhang   PetscFunctionBegin;
9504ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsMonitorInternalSteps_C",(TS,PetscBool),(ts,ft));CHKERRQ(ierr);
9512bfc04deSHong Zhang   PetscFunctionReturn(0);
9522bfc04deSHong Zhang }
9537cb94ee6SHong Zhang /* -------------------------------------------------------------------------------------------*/
9547cb94ee6SHong Zhang /*MC
95596f5712cSJed Brown       TSSUNDIALS - ODE solver using the LLNL CVODE/SUNDIALS package (now called SUNDIALS)
9567cb94ee6SHong Zhang 
9577cb94ee6SHong Zhang    Options Database:
9587cb94ee6SHong Zhang +    -ts_sundials_type <bdf,adams>
9597cb94ee6SHong Zhang .    -ts_sundials_gramschmidt_type <modified, classical> - type of orthogonalization inside GMRES
9607cb94ee6SHong Zhang .    -ts_sundials_atol <tol> - Absolute tolerance for convergence
9617cb94ee6SHong Zhang .    -ts_sundials_rtol <tol> - Relative tolerance for convergence
9627cb94ee6SHong Zhang .    -ts_sundials_linear_tolerance <tol>
9637cb94ee6SHong Zhang .    -ts_sundials_gmres_restart <restart> - Number of GMRES orthogonalization directions
96416016685SHong Zhang .    -ts_sundials_exact_final_time - Interpolate output to stop exactly at the final time
96516016685SHong Zhang -    -ts_sundials_monitor_steps - Monitor SUNDIALS internel steps
96616016685SHong Zhang 
9677cb94ee6SHong Zhang 
9687cb94ee6SHong Zhang     Notes: This uses its own nonlinear solver and Krylov method so PETSc SNES and KSP options do not apply
9697cb94ee6SHong Zhang            only PETSc PC options
9707cb94ee6SHong Zhang 
9717cb94ee6SHong Zhang     Level: beginner
9727cb94ee6SHong Zhang 
9737cb94ee6SHong Zhang .seealso:  TSCreate(), TS, TSSetType(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), TSSundialsSetLinearTolerance(),
9747cb94ee6SHong Zhang            TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), TSSundialsGetPC(), TSSundialsGetIterations(), TSSundialsSetExactFinalTime()
9757cb94ee6SHong Zhang 
9767cb94ee6SHong Zhang M*/
9777cb94ee6SHong Zhang EXTERN_C_BEGIN
9787cb94ee6SHong Zhang #undef __FUNCT__
9797cb94ee6SHong Zhang #define __FUNCT__ "TSCreate_Sundials"
9807cb94ee6SHong Zhang PetscErrorCode PETSCTS_DLLEXPORT TSCreate_Sundials(TS ts)
9817cb94ee6SHong Zhang {
9827cb94ee6SHong Zhang   TS_Sundials *cvode;
9837cb94ee6SHong Zhang   PetscErrorCode ierr;
9847cb94ee6SHong Zhang 
9857cb94ee6SHong Zhang   PetscFunctionBegin;
98617186662SBarry Smith   if (ts->problem_type != TS_NONLINEAR) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only support for nonlinear problems");
98728adb3f7SHong Zhang   ts->ops->destroy        = TSDestroy_Sundials;
98828adb3f7SHong Zhang   ts->ops->view           = TSView_Sundials;
9897cb94ee6SHong Zhang   ts->ops->setup          = TSSetUp_Sundials_Nonlinear;
9907cb94ee6SHong Zhang   ts->ops->step           = TSStep_Sundials_Nonlinear;
9917cb94ee6SHong Zhang   ts->ops->setfromoptions = TSSetFromOptions_Sundials_Nonlinear;
9927cb94ee6SHong Zhang 
99338f2d2fdSLisandro Dalcin   ierr = PetscNewLog(ts,TS_Sundials,&cvode);CHKERRQ(ierr);
9947adad957SLisandro Dalcin   ierr = PCCreate(((PetscObject)ts)->comm,&cvode->pc);CHKERRQ(ierr);
9957cb94ee6SHong Zhang   ierr = PetscLogObjectParent(ts,cvode->pc);CHKERRQ(ierr);
9967cb94ee6SHong Zhang   ts->data          = (void*)cvode;
9976fadb2cdSHong Zhang   cvode->cvode_type = SUNDIALS_BDF;
9986fadb2cdSHong Zhang   cvode->gtype      = SUNDIALS_CLASSICAL_GS;
9997cb94ee6SHong Zhang   cvode->restart    = 5;
10007cb94ee6SHong Zhang   cvode->linear_tol = .05;
10017cb94ee6SHong Zhang 
10022bfc04deSHong Zhang   cvode->exact_final_time = PETSC_TRUE;
10032bfc04deSHong Zhang   cvode->monitorstep      = PETSC_FALSE;
10047cb94ee6SHong Zhang 
1005a07356b8SSatish Balay   ierr = MPI_Comm_dup(((PetscObject)ts)->comm,&(cvode->comm_sundials));CHKERRQ(ierr);
1006f1cd61daSJed Brown 
1007f1cd61daSJed Brown   cvode->mindt = -1.;
1008f1cd61daSJed Brown   cvode->maxdt = -1.;
1009f1cd61daSJed Brown 
10107cb94ee6SHong Zhang   /* set tolerance for Sundials */
10117cb94ee6SHong Zhang   cvode->reltol = 1e-6;
10122c823083SHong Zhang   cvode->abstol = 1e-6;
10137cb94ee6SHong Zhang 
10147cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetType_C","TSSundialsSetType_Sundials",
10157cb94ee6SHong Zhang                     TSSundialsSetType_Sundials);CHKERRQ(ierr);
10167cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetGMRESRestart_C",
10177cb94ee6SHong Zhang                     "TSSundialsSetGMRESRestart_Sundials",
10187cb94ee6SHong Zhang                     TSSundialsSetGMRESRestart_Sundials);CHKERRQ(ierr);
10197cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetLinearTolerance_C",
10207cb94ee6SHong Zhang                     "TSSundialsSetLinearTolerance_Sundials",
10217cb94ee6SHong Zhang                      TSSundialsSetLinearTolerance_Sundials);CHKERRQ(ierr);
10227cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetGramSchmidtType_C",
10237cb94ee6SHong Zhang                     "TSSundialsSetGramSchmidtType_Sundials",
10247cb94ee6SHong Zhang                      TSSundialsSetGramSchmidtType_Sundials);CHKERRQ(ierr);
10257cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetTolerance_C",
10267cb94ee6SHong Zhang                     "TSSundialsSetTolerance_Sundials",
10277cb94ee6SHong Zhang                      TSSundialsSetTolerance_Sundials);CHKERRQ(ierr);
1028f1cd61daSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetMinTimeStep_C",
1029f1cd61daSJed Brown                     "TSSundialsSetMinTimeStep_Sundials",
1030f1cd61daSJed Brown                      TSSundialsSetMinTimeStep_Sundials);CHKERRQ(ierr);
1031f1cd61daSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetMaxTimeStep_C",
1032f1cd61daSJed Brown                     "TSSundialsSetMaxTimeStep_Sundials",
1033f1cd61daSJed Brown                      TSSundialsSetMaxTimeStep_Sundials);CHKERRQ(ierr);
10347cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsGetPC_C",
10357cb94ee6SHong Zhang                     "TSSundialsGetPC_Sundials",
10367cb94ee6SHong Zhang                      TSSundialsGetPC_Sundials);CHKERRQ(ierr);
10377cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsGetIterations_C",
10387cb94ee6SHong Zhang                     "TSSundialsGetIterations_Sundials",
10397cb94ee6SHong Zhang                      TSSundialsGetIterations_Sundials);CHKERRQ(ierr);
10407cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetExactFinalTime_C",
10417cb94ee6SHong Zhang                     "TSSundialsSetExactFinalTime_Sundials",
10427cb94ee6SHong Zhang                      TSSundialsSetExactFinalTime_Sundials);CHKERRQ(ierr);
10432bfc04deSHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsMonitorInternalSteps_C",
10442bfc04deSHong Zhang                     "TSSundialsMonitorInternalSteps_Sundials",
10452bfc04deSHong Zhang                      TSSundialsMonitorInternalSteps_Sundials);CHKERRQ(ierr);
10462bfc04deSHong Zhang 
10477cb94ee6SHong Zhang   PetscFunctionReturn(0);
10487cb94ee6SHong Zhang }
10497cb94ee6SHong Zhang EXTERN_C_END
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