17cb94ee6SHong Zhang /* 2db268bfaSHong Zhang Provides a PETSc interface to SUNDIALS/CVODE solver. 37cb94ee6SHong Zhang The interface to PVODE (old version of CVODE) was originally contributed 47cb94ee6SHong Zhang by Liyang Xu. It has been redone by Hong Zhang and Dinesh Kaushik. 528adb3f7SHong Zhang 628adb3f7SHong Zhang Reference: sundials-2.4.0/examples/cvode/parallel/cvDiurnal_kry_p.c 77cb94ee6SHong Zhang */ 856a740aaSHong Zhang #include "sundials.h" /*I "petscts.h" I*/ 97cb94ee6SHong Zhang 107cb94ee6SHong Zhang /* 117cb94ee6SHong Zhang TSPrecond_Sundials - function that we provide to SUNDIALS to 127cb94ee6SHong Zhang evaluate the preconditioner. 137cb94ee6SHong Zhang */ 147cb94ee6SHong Zhang #undef __FUNCT__ 157cb94ee6SHong Zhang #define __FUNCT__ "TSPrecond_Sundials" 167cb94ee6SHong Zhang PetscErrorCode TSPrecond_Sundials(realtype tn,N_Vector y,N_Vector fy, 177cb94ee6SHong Zhang booleantype jok,booleantype *jcurPtr, 187cb94ee6SHong Zhang realtype _gamma,void *P_data, 197cb94ee6SHong Zhang N_Vector vtemp1,N_Vector vtemp2,N_Vector vtemp3) 207cb94ee6SHong Zhang { 217cb94ee6SHong Zhang TS ts = (TS) P_data; 227cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 23*dcbc6d53SSean Farley PC pc; 247cb94ee6SHong Zhang PetscErrorCode ierr; 25089b2837SJed Brown Mat Jac; 267cb94ee6SHong Zhang Vec yy = cvode->w1; 277cb94ee6SHong Zhang PetscScalar one = 1.0,gm; 287cb94ee6SHong Zhang MatStructure str = DIFFERENT_NONZERO_PATTERN; 297cb94ee6SHong Zhang PetscScalar *y_data; 307cb94ee6SHong Zhang 317cb94ee6SHong Zhang PetscFunctionBegin; 32089b2837SJed Brown ierr = TSGetRHSJacobian(ts,PETSC_NULL,&Jac,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr); 337cb94ee6SHong Zhang /* This allows us to construct preconditioners in-place if we like */ 347cb94ee6SHong Zhang ierr = MatSetUnfactored(Jac);CHKERRQ(ierr); 357cb94ee6SHong Zhang 367cb94ee6SHong Zhang /* jok - TRUE means reuse current Jacobian else recompute Jacobian */ 377cb94ee6SHong Zhang if (jok) { 387cb94ee6SHong Zhang ierr = MatCopy(cvode->pmat,Jac,str);CHKERRQ(ierr); 397cb94ee6SHong Zhang *jcurPtr = FALSE; 407cb94ee6SHong Zhang } else { 417cb94ee6SHong Zhang /* make PETSc vector yy point to SUNDIALS vector y */ 427cb94ee6SHong Zhang y_data = (PetscScalar *) N_VGetArrayPointer(y); 437cb94ee6SHong Zhang ierr = VecPlaceArray(yy,y_data); CHKERRQ(ierr); 444ac7836bSHong Zhang 457cb94ee6SHong Zhang /* compute the Jacobian */ 467cb94ee6SHong Zhang ierr = TSComputeRHSJacobian(ts,ts->ptime,yy,&Jac,&Jac,&str);CHKERRQ(ierr); 477cb94ee6SHong Zhang ierr = VecResetArray(yy); CHKERRQ(ierr); 484ac7836bSHong Zhang 497cb94ee6SHong Zhang /* copy the Jacobian matrix */ 507cb94ee6SHong Zhang if (!cvode->pmat) { 517cb94ee6SHong Zhang ierr = MatDuplicate(Jac,MAT_COPY_VALUES,&cvode->pmat);CHKERRQ(ierr); 527cb94ee6SHong Zhang ierr = PetscLogObjectParent(ts,cvode->pmat);CHKERRQ(ierr); 532c823083SHong Zhang } else { 547cb94ee6SHong Zhang ierr = MatCopy(Jac,cvode->pmat,str);CHKERRQ(ierr); 557cb94ee6SHong Zhang } 567cb94ee6SHong Zhang *jcurPtr = TRUE; 577cb94ee6SHong Zhang } 587cb94ee6SHong Zhang 597cb94ee6SHong Zhang /* construct I-gamma*Jac */ 607cb94ee6SHong Zhang gm = -_gamma; 617cb94ee6SHong Zhang ierr = MatScale(Jac,gm);CHKERRQ(ierr); 627cb94ee6SHong Zhang ierr = MatShift(Jac,one);CHKERRQ(ierr); 637cb94ee6SHong Zhang 64*dcbc6d53SSean Farley ierr = TSSundialsGetPC(ts,&pc); CHKERRQ(ierr); 657cb94ee6SHong Zhang ierr = PCSetOperators(pc,Jac,Jac,str);CHKERRQ(ierr); 667cb94ee6SHong Zhang PetscFunctionReturn(0); 677cb94ee6SHong Zhang } 687cb94ee6SHong Zhang 697cb94ee6SHong Zhang /* 707cb94ee6SHong Zhang TSPSolve_Sundials - routine that we provide to Sundials that applies the preconditioner. 717cb94ee6SHong Zhang */ 727cb94ee6SHong Zhang #undef __FUNCT__ 737cb94ee6SHong Zhang #define __FUNCT__ "TSPSolve_Sundials" 744ac7836bSHong Zhang PetscErrorCode TSPSolve_Sundials(realtype tn,N_Vector y,N_Vector fy,N_Vector r,N_Vector z, 754ac7836bSHong Zhang realtype _gamma,realtype delta,int lr,void *P_data,N_Vector vtemp) 767cb94ee6SHong Zhang { 777cb94ee6SHong Zhang TS ts = (TS) P_data; 787cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 79*dcbc6d53SSean Farley PC pc; 807cb94ee6SHong Zhang Vec rr = cvode->w1,zz = cvode->w2; 817cb94ee6SHong Zhang PetscErrorCode ierr; 827cb94ee6SHong Zhang PetscScalar *r_data,*z_data; 837cb94ee6SHong Zhang 847cb94ee6SHong Zhang PetscFunctionBegin; 857cb94ee6SHong Zhang /* Make the PETSc work vectors rr and zz point to the arrays in the SUNDIALS vectors r and z respectively*/ 867cb94ee6SHong Zhang r_data = (PetscScalar *) N_VGetArrayPointer(r); 877cb94ee6SHong Zhang z_data = (PetscScalar *) N_VGetArrayPointer(z); 887cb94ee6SHong Zhang ierr = VecPlaceArray(rr,r_data); CHKERRQ(ierr); 897cb94ee6SHong Zhang ierr = VecPlaceArray(zz,z_data); CHKERRQ(ierr); 904ac7836bSHong Zhang 917cb94ee6SHong Zhang /* Solve the Px=r and put the result in zz */ 92*dcbc6d53SSean Farley ierr = TSSundialsGetPC(ts,&pc); CHKERRQ(ierr); 937cb94ee6SHong Zhang ierr = PCApply(pc,rr,zz); CHKERRQ(ierr); 947cb94ee6SHong Zhang ierr = VecResetArray(rr); CHKERRQ(ierr); 957cb94ee6SHong Zhang ierr = VecResetArray(zz); CHKERRQ(ierr); 967cb94ee6SHong Zhang PetscFunctionReturn(0); 977cb94ee6SHong Zhang } 987cb94ee6SHong Zhang 997cb94ee6SHong Zhang /* 1007cb94ee6SHong Zhang TSFunction_Sundials - routine that we provide to Sundials that applies the right hand side. 1017cb94ee6SHong Zhang */ 1027cb94ee6SHong Zhang #undef __FUNCT__ 1037cb94ee6SHong Zhang #define __FUNCT__ "TSFunction_Sundials" 1044ac7836bSHong Zhang int TSFunction_Sundials(realtype t,N_Vector y,N_Vector ydot,void *ctx) 1057cb94ee6SHong Zhang { 1067cb94ee6SHong Zhang TS ts = (TS) ctx; 1077adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)ts)->comm; 1087cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 1097cb94ee6SHong Zhang Vec yy = cvode->w1,yyd = cvode->w2; 1107cb94ee6SHong Zhang PetscScalar *y_data,*ydot_data; 1117cb94ee6SHong Zhang PetscErrorCode ierr; 1127cb94ee6SHong Zhang 1137cb94ee6SHong Zhang PetscFunctionBegin; 1145ff03cf7SDinesh Kaushik /* Make the PETSc work vectors yy and yyd point to the arrays in the SUNDIALS vectors y and ydot respectively*/ 1157cb94ee6SHong Zhang y_data = (PetscScalar *) N_VGetArrayPointer(y); 1167cb94ee6SHong Zhang ydot_data = (PetscScalar *) N_VGetArrayPointer(ydot); 1174ac7836bSHong Zhang ierr = VecPlaceArray(yy,y_data);CHKERRABORT(comm,ierr); 1184ac7836bSHong Zhang ierr = VecPlaceArray(yyd,ydot_data); CHKERRABORT(comm,ierr); 1194ac7836bSHong Zhang 1207cb94ee6SHong Zhang /* now compute the right hand side function */ 1217cb94ee6SHong Zhang ierr = TSComputeRHSFunction(ts,t,yy,yyd); CHKERRABORT(comm,ierr); 1227cb94ee6SHong Zhang ierr = VecResetArray(yy); CHKERRABORT(comm,ierr); 1237cb94ee6SHong Zhang ierr = VecResetArray(yyd); CHKERRABORT(comm,ierr); 1244ac7836bSHong Zhang PetscFunctionReturn(0); 1257cb94ee6SHong Zhang } 1267cb94ee6SHong Zhang 1277cb94ee6SHong Zhang /* 128214bc6a2SJed Brown TSStep_Sundials - Calls Sundials to integrate the ODE. 1297cb94ee6SHong Zhang */ 1307cb94ee6SHong Zhang #undef __FUNCT__ 131214bc6a2SJed Brown #define __FUNCT__ "TSStep_Sundials" 132193ac0bcSJed Brown PetscErrorCode TSStep_Sundials(TS ts) 1337cb94ee6SHong Zhang { 1347cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 1357cb94ee6SHong Zhang Vec sol = ts->vec_sol; 1367cb94ee6SHong Zhang PetscErrorCode ierr; 137186e87acSLisandro Dalcin PetscInt i,flag; 1389f94935aSHong Zhang long int its,nsteps; 1397cb94ee6SHong Zhang realtype t,tout; 1407cb94ee6SHong Zhang PetscScalar *y_data; 1417cb94ee6SHong Zhang void *mem; 1427cb94ee6SHong Zhang 1437cb94ee6SHong Zhang PetscFunctionBegin; 14416016685SHong Zhang mem = cvode->mem; 1457cb94ee6SHong Zhang tout = ts->max_time; 1467cb94ee6SHong Zhang ierr = VecGetArray(ts->vec_sol,&y_data);CHKERRQ(ierr); 1477cb94ee6SHong Zhang N_VSetArrayPointer((realtype *)y_data,cvode->y); 1487cb94ee6SHong Zhang ierr = VecRestoreArray(ts->vec_sol,PETSC_NULL);CHKERRQ(ierr); 149186e87acSLisandro Dalcin 150186e87acSLisandro Dalcin for (i = 0; i < ts->max_steps; i++) { 1517cb94ee6SHong Zhang if (ts->ptime >= ts->max_time) break; 1523f2090d5SJed Brown ierr = TSPreStep(ts);CHKERRQ(ierr); 153186e87acSLisandro Dalcin 1542bfc04deSHong Zhang if (cvode->monitorstep) { 15528adb3f7SHong Zhang flag = CVode(mem,tout,cvode->y,&t,CV_ONE_STEP); 1562bfc04deSHong Zhang } else { 1572bfc04deSHong Zhang flag = CVode(mem,tout,cvode->y,&t,CV_NORMAL); 1582bfc04deSHong Zhang } 1599f94935aSHong Zhang 1609f94935aSHong Zhang if (flag){ /* display error message */ 1619f94935aSHong Zhang switch (flag){ 1629f94935aSHong Zhang case CV_ILL_INPUT: 1639f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_ILL_INPUT"); 1649f94935aSHong Zhang break; 1659f94935aSHong Zhang case CV_TOO_CLOSE: 1669f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_CLOSE"); 1679f94935aSHong Zhang break; 1683c7fefeeSJed Brown case CV_TOO_MUCH_WORK: { 1699f94935aSHong Zhang PetscReal tcur; 1709f94935aSHong Zhang ierr = CVodeGetNumSteps(mem,&nsteps);CHKERRQ(ierr); 1719f94935aSHong Zhang ierr = CVodeGetCurrentTime(mem,&tcur);CHKERRQ(ierr); 1729f94935aSHong Zhang SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_MUCH_WORK. At t=%G, nsteps %D exceeds mxstep %D. Increase '-ts_max_steps <>' or modify TSSetDuration()",tcur,nsteps,ts->max_steps); 1733c7fefeeSJed Brown } break; 1749f94935aSHong Zhang case CV_TOO_MUCH_ACC: 1759f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_MUCH_ACC"); 1769f94935aSHong Zhang break; 1779f94935aSHong Zhang case CV_ERR_FAILURE: 1789f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_ERR_FAILURE"); 1799f94935aSHong Zhang break; 1809f94935aSHong Zhang case CV_CONV_FAILURE: 1819f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_CONV_FAILURE"); 1829f94935aSHong Zhang break; 1839f94935aSHong Zhang case CV_LINIT_FAIL: 1849f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LINIT_FAIL"); 1859f94935aSHong Zhang break; 1869f94935aSHong Zhang case CV_LSETUP_FAIL: 1879f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LSETUP_FAIL"); 1889f94935aSHong Zhang break; 1899f94935aSHong Zhang case CV_LSOLVE_FAIL: 1909f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LSOLVE_FAIL"); 1919f94935aSHong Zhang break; 1929f94935aSHong Zhang case CV_RHSFUNC_FAIL: 1939f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_RHSFUNC_FAIL"); 1949f94935aSHong Zhang break; 1959f94935aSHong Zhang case CV_FIRST_RHSFUNC_ERR: 1969f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_FIRST_RHSFUNC_ERR"); 1979f94935aSHong Zhang break; 1989f94935aSHong Zhang case CV_REPTD_RHSFUNC_ERR: 1999f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_REPTD_RHSFUNC_ERR"); 2009f94935aSHong Zhang break; 2019f94935aSHong Zhang case CV_UNREC_RHSFUNC_ERR: 2029f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_UNREC_RHSFUNC_ERR"); 2039f94935aSHong Zhang break; 2049f94935aSHong Zhang case CV_RTFUNC_FAIL: 2059f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_RTFUNC_FAIL"); 2069f94935aSHong Zhang break; 2079f94935aSHong Zhang default: 2089f94935aSHong Zhang SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, flag %d",flag); 2099f94935aSHong Zhang } 2109f94935aSHong Zhang } 2119f94935aSHong Zhang 2127cb94ee6SHong Zhang if (t > ts->max_time && cvode->exact_final_time) { 2137cb94ee6SHong Zhang /* interpolate to final requested time */ 2147cb94ee6SHong Zhang ierr = CVodeGetDky(mem,tout,0,cvode->y);CHKERRQ(ierr); 2157cb94ee6SHong Zhang t = tout; 2167cb94ee6SHong Zhang } 2177cb94ee6SHong Zhang 2187cb94ee6SHong Zhang /* copy the solution from cvode->y to cvode->update and sol */ 2197cb94ee6SHong Zhang ierr = VecPlaceArray(cvode->w1,y_data); CHKERRQ(ierr); 2207cb94ee6SHong Zhang ierr = VecCopy(cvode->w1,cvode->update);CHKERRQ(ierr); 2217cb94ee6SHong Zhang ierr = VecResetArray(cvode->w1); CHKERRQ(ierr); 2227cb94ee6SHong Zhang ierr = VecCopy(cvode->update,sol);CHKERRQ(ierr); 2237cb94ee6SHong Zhang ierr = CVodeGetNumNonlinSolvIters(mem,&its);CHKERRQ(ierr); 2244ac7836bSHong Zhang ierr = CVSpilsGetNumLinIters(mem, &its); 225186e87acSLisandro Dalcin ts->nonlinear_its = its; ts->linear_its = its; 226186e87acSLisandro Dalcin 227186e87acSLisandro Dalcin ts->time_step = t - ts->ptime; 228186e87acSLisandro Dalcin ts->ptime = t; 2297cb94ee6SHong Zhang ts->steps++; 230186e87acSLisandro Dalcin 2313f2090d5SJed Brown ierr = TSPostStep(ts);CHKERRQ(ierr); 2327cb94ee6SHong Zhang ierr = TSMonitor(ts,ts->steps,t,sol);CHKERRQ(ierr); 2337cb94ee6SHong Zhang } 2349f94935aSHong Zhang ierr = CVodeGetNumSteps(mem,&nsteps);CHKERRQ(ierr); 2357cb94ee6SHong Zhang PetscFunctionReturn(0); 2367cb94ee6SHong Zhang } 2377cb94ee6SHong Zhang 2387cb94ee6SHong Zhang #undef __FUNCT__ 239277b19d0SLisandro Dalcin #define __FUNCT__ "TSReset_Sundials" 240277b19d0SLisandro Dalcin PetscErrorCode TSReset_Sundials(TS ts) 241277b19d0SLisandro Dalcin { 242277b19d0SLisandro Dalcin TS_Sundials *cvode = (TS_Sundials*)ts->data; 243277b19d0SLisandro Dalcin PetscErrorCode ierr; 244277b19d0SLisandro Dalcin 245277b19d0SLisandro Dalcin PetscFunctionBegin; 246d155d410SJed Brown ierr = MatDestroy(&cvode->pmat); 247d155d410SJed Brown ierr = VecDestroy(&cvode->update); 248d155d410SJed Brown ierr = VecDestroy(&cvode->func); 249d155d410SJed Brown ierr = VecDestroy(&cvode->rhs); 250d155d410SJed Brown ierr = VecDestroy(&cvode->w1); 251d155d410SJed Brown ierr = VecDestroy(&cvode->w2); 252277b19d0SLisandro Dalcin if (cvode->mem) {CVodeFree(&cvode->mem);} 253277b19d0SLisandro Dalcin PetscFunctionReturn(0); 254277b19d0SLisandro Dalcin } 255277b19d0SLisandro Dalcin 256277b19d0SLisandro Dalcin #undef __FUNCT__ 2577cb94ee6SHong Zhang #define __FUNCT__ "TSDestroy_Sundials" 2587cb94ee6SHong Zhang PetscErrorCode TSDestroy_Sundials(TS ts) 2597cb94ee6SHong Zhang { 2607cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 2617cb94ee6SHong Zhang PetscErrorCode ierr; 2627cb94ee6SHong Zhang 2637cb94ee6SHong Zhang PetscFunctionBegin; 264277b19d0SLisandro Dalcin ierr = TSReset_Sundials(ts);CHKERRQ(ierr); 265a07356b8SSatish Balay ierr = MPI_Comm_free(&(cvode->comm_sundials));CHKERRQ(ierr); 266277b19d0SLisandro Dalcin ierr = PetscFree(ts->data);CHKERRQ(ierr); 2677cb94ee6SHong Zhang PetscFunctionReturn(0); 2687cb94ee6SHong Zhang } 2697cb94ee6SHong Zhang 2707cb94ee6SHong Zhang #undef __FUNCT__ 271214bc6a2SJed Brown #define __FUNCT__ "TSSetUp_Sundials" 272214bc6a2SJed Brown PetscErrorCode TSSetUp_Sundials(TS ts) 2737cb94ee6SHong Zhang { 2747cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 2757cb94ee6SHong Zhang PetscErrorCode ierr; 27616016685SHong Zhang PetscInt glosize,locsize,i,flag; 2777cb94ee6SHong Zhang PetscScalar *y_data,*parray; 27816016685SHong Zhang void *mem; 279*dcbc6d53SSean Farley PC pc; 28016016685SHong Zhang const PCType pctype; 281ace3abfcSBarry Smith PetscBool pcnone; 28216016685SHong Zhang Vec sol = ts->vec_sol; 2837cb94ee6SHong Zhang 2847cb94ee6SHong Zhang PetscFunctionBegin; 2859f94935aSHong Zhang 2867cb94ee6SHong Zhang /* get the vector size */ 2877cb94ee6SHong Zhang ierr = VecGetSize(ts->vec_sol,&glosize);CHKERRQ(ierr); 2887cb94ee6SHong Zhang ierr = VecGetLocalSize(ts->vec_sol,&locsize);CHKERRQ(ierr); 2897cb94ee6SHong Zhang 2907cb94ee6SHong Zhang /* allocate the memory for N_Vec y */ 291a07356b8SSatish Balay cvode->y = N_VNew_Parallel(cvode->comm_sundials,locsize,glosize); 292e32f2f54SBarry Smith if (!cvode->y) SETERRQ(PETSC_COMM_SELF,1,"cvode->y is not allocated"); 2937cb94ee6SHong Zhang 29428adb3f7SHong Zhang /* initialize N_Vec y: copy ts->vec_sol to cvode->y */ 2957cb94ee6SHong Zhang ierr = VecGetArray(ts->vec_sol,&parray);CHKERRQ(ierr); 2967cb94ee6SHong Zhang y_data = (PetscScalar *) N_VGetArrayPointer(cvode->y); 2977cb94ee6SHong Zhang for (i = 0; i < locsize; i++) y_data[i] = parray[i]; 2987cb94ee6SHong Zhang /*ierr = PetscMemcpy(y_data,parray,locsize*sizeof(PETSC_SCALAR)); CHKERRQ(ierr);*/ 2997cb94ee6SHong Zhang ierr = VecRestoreArray(ts->vec_sol,PETSC_NULL);CHKERRQ(ierr); 3007cb94ee6SHong Zhang ierr = VecDuplicate(ts->vec_sol,&cvode->update);CHKERRQ(ierr); 3017cb94ee6SHong Zhang ierr = VecDuplicate(ts->vec_sol,&cvode->func);CHKERRQ(ierr); 3027cb94ee6SHong Zhang ierr = PetscLogObjectParent(ts,cvode->update);CHKERRQ(ierr); 3037cb94ee6SHong Zhang ierr = PetscLogObjectParent(ts,cvode->func);CHKERRQ(ierr); 3047cb94ee6SHong Zhang 3057cb94ee6SHong Zhang /* 3067cb94ee6SHong Zhang Create work vectors for the TSPSolve_Sundials() routine. Note these are 3077cb94ee6SHong Zhang allocated with zero space arrays because the actual array space is provided 3087cb94ee6SHong Zhang by Sundials and set using VecPlaceArray(). 3097cb94ee6SHong Zhang */ 3107adad957SLisandro Dalcin ierr = VecCreateMPIWithArray(((PetscObject)ts)->comm,locsize,PETSC_DECIDE,0,&cvode->w1);CHKERRQ(ierr); 3117adad957SLisandro Dalcin ierr = VecCreateMPIWithArray(((PetscObject)ts)->comm,locsize,PETSC_DECIDE,0,&cvode->w2);CHKERRQ(ierr); 3127cb94ee6SHong Zhang ierr = PetscLogObjectParent(ts,cvode->w1);CHKERRQ(ierr); 3137cb94ee6SHong Zhang ierr = PetscLogObjectParent(ts,cvode->w2);CHKERRQ(ierr); 31416016685SHong Zhang 31516016685SHong Zhang /* Call CVodeCreate to create the solver memory and the use of a Newton iteration */ 31616016685SHong Zhang mem = CVodeCreate(cvode->cvode_type, CV_NEWTON); 317e32f2f54SBarry Smith if (!mem) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"CVodeCreate() fails"); 31816016685SHong Zhang cvode->mem = mem; 31916016685SHong Zhang 32016016685SHong Zhang /* Set the pointer to user-defined data */ 32116016685SHong Zhang flag = CVodeSetUserData(mem, ts); 322e32f2f54SBarry Smith if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeSetUserData() fails"); 32316016685SHong Zhang 324fc6b9e64SJed Brown /* Sundials may choose to use a smaller initial step, but will never use a larger step. */ 325fc6b9e64SJed Brown flag = CVodeSetInitStep(mem,(realtype)ts->initial_time_step); 326fc6b9e64SJed Brown if (flag) SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetInitStep() failed"); 327f1cd61daSJed Brown if (cvode->mindt > 0) { 328f1cd61daSJed Brown flag = CVodeSetMinStep(mem,(realtype)cvode->mindt); 3299f94935aSHong Zhang if (flag){ 3309f94935aSHong Zhang if (flag == CV_MEM_NULL){ 3319f94935aSHong Zhang SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed, cvode_mem pointer is NULL"); 3329f94935aSHong Zhang } else if (flag == CV_ILL_INPUT){ 3339f94935aSHong Zhang SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed, hmin is nonpositive or it exceeds the maximum allowable step size"); 3349f94935aSHong Zhang } else { 3359f94935aSHong Zhang SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed"); 3369f94935aSHong Zhang } 3379f94935aSHong Zhang } 338f1cd61daSJed Brown } 339f1cd61daSJed Brown if (cvode->maxdt > 0) { 340f1cd61daSJed Brown flag = CVodeSetMaxStep(mem,(realtype)cvode->maxdt); 341f1cd61daSJed Brown if (flag) SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMaxStep() failed"); 342f1cd61daSJed Brown } 343f1cd61daSJed Brown 34416016685SHong Zhang /* Call CVodeInit to initialize the integrator memory and specify the 34516016685SHong Zhang * user's right hand side function in u'=f(t,u), the inital time T0, and 34616016685SHong Zhang * the initial dependent variable vector cvode->y */ 34716016685SHong Zhang flag = CVodeInit(mem,TSFunction_Sundials,ts->ptime,cvode->y); 34816016685SHong Zhang if (flag){ 349e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeInit() fails, flag %d",flag); 35016016685SHong Zhang } 35116016685SHong Zhang 3529f94935aSHong Zhang /* specifies scalar relative and absolute tolerances */ 35316016685SHong Zhang flag = CVodeSStolerances(mem,cvode->reltol,cvode->abstol); 35416016685SHong Zhang if (flag){ 355e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeSStolerances() fails, flag %d",flag); 35616016685SHong Zhang } 35716016685SHong Zhang 3589f94935aSHong Zhang /* Specify max num of steps to be taken by cvode in its attempt to reach the next output time */ 3599f94935aSHong Zhang flag = CVodeSetMaxNumSteps(mem,ts->max_steps); 36016016685SHong Zhang ierr = TSMonitor(ts,ts->steps,ts->ptime,sol);CHKERRQ(ierr); 36116016685SHong Zhang 36216016685SHong Zhang /* call CVSpgmr to use GMRES as the linear solver. */ 36316016685SHong Zhang /* setup the ode integrator with the given preconditioner */ 364*dcbc6d53SSean Farley ierr = TSSundialsGetPC(ts,&pc); CHKERRQ(ierr); 365*dcbc6d53SSean Farley ierr = PCGetType(pc,&pctype);CHKERRQ(ierr); 366*dcbc6d53SSean Farley ierr = PetscTypeCompare((PetscObject)pc,PCNONE,&pcnone);CHKERRQ(ierr); 36716016685SHong Zhang if (pcnone){ 36816016685SHong Zhang flag = CVSpgmr(mem,PREC_NONE,0); 369e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmr() fails, flag %d",flag); 37016016685SHong Zhang } else { 37116016685SHong Zhang flag = CVSpgmr(mem,PREC_LEFT,0); 372e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmr() fails, flag %d",flag); 37316016685SHong Zhang 37416016685SHong Zhang /* Set preconditioner and solve routines Precond and PSolve, 37516016685SHong Zhang and the pointer to the user-defined block data */ 37616016685SHong Zhang flag = CVSpilsSetPreconditioner(mem,TSPrecond_Sundials,TSPSolve_Sundials); 377e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpilsSetPreconditioner() fails, flag %d", flag); 37816016685SHong Zhang } 37916016685SHong Zhang 38016016685SHong Zhang flag = CVSpilsSetGSType(mem, MODIFIED_GS); 381e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmrSetGSType() fails, flag %d",flag); 3827cb94ee6SHong Zhang PetscFunctionReturn(0); 3837cb94ee6SHong Zhang } 3847cb94ee6SHong Zhang 3856fadb2cdSHong Zhang /* type of CVODE linear multistep method */ 386dfcd32c8SHong Zhang const char *TSSundialsLmmTypes[] = {"","adams","bdf","TSSundialsLmmType","SUNDIALS_",0}; 3876fadb2cdSHong Zhang /* type of G-S orthogonalization used by CVODE linear solver */ 388dfcd32c8SHong Zhang const char *TSSundialsGramSchmidtTypes[] = {"","modified","classical","TSSundialsGramSchmidtType","SUNDIALS_",0}; 389a04cf4d8SBarry Smith 3907cb94ee6SHong Zhang #undef __FUNCT__ 391214bc6a2SJed Brown #define __FUNCT__ "TSSetFromOptions_Sundials" 392214bc6a2SJed Brown PetscErrorCode TSSetFromOptions_Sundials(TS ts) 3937cb94ee6SHong Zhang { 3947cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 3957cb94ee6SHong Zhang PetscErrorCode ierr; 3967cb94ee6SHong Zhang int indx; 397ace3abfcSBarry Smith PetscBool flag; 3987cb94ee6SHong Zhang 3997cb94ee6SHong Zhang PetscFunctionBegin; 4007cb94ee6SHong Zhang ierr = PetscOptionsHead("SUNDIALS ODE solver options");CHKERRQ(ierr); 4016fadb2cdSHong Zhang ierr = PetscOptionsEList("-ts_sundials_type","Scheme","TSSundialsSetType",TSSundialsLmmTypes,3,TSSundialsLmmTypes[cvode->cvode_type],&indx,&flag);CHKERRQ(ierr); 4027cb94ee6SHong Zhang if (flag) { 4036fadb2cdSHong Zhang ierr = TSSundialsSetType(ts,(TSSundialsLmmType)indx);CHKERRQ(ierr); 4047cb94ee6SHong Zhang } 4056fadb2cdSHong Zhang ierr = PetscOptionsEList("-ts_sundials_gramschmidt_type","Type of orthogonalization","TSSundialsSetGramSchmidtType",TSSundialsGramSchmidtTypes,3,TSSundialsGramSchmidtTypes[cvode->gtype],&indx,&flag);CHKERRQ(ierr); 4067cb94ee6SHong Zhang if (flag) { 4077cb94ee6SHong Zhang ierr = TSSundialsSetGramSchmidtType(ts,(TSSundialsGramSchmidtType)indx);CHKERRQ(ierr); 4087cb94ee6SHong Zhang } 4097cb94ee6SHong Zhang ierr = PetscOptionsReal("-ts_sundials_atol","Absolute tolerance for convergence","TSSundialsSetTolerance",cvode->abstol,&cvode->abstol,PETSC_NULL);CHKERRQ(ierr); 4107cb94ee6SHong Zhang ierr = PetscOptionsReal("-ts_sundials_rtol","Relative tolerance for convergence","TSSundialsSetTolerance",cvode->reltol,&cvode->reltol,PETSC_NULL);CHKERRQ(ierr); 411f1cd61daSJed Brown ierr = PetscOptionsReal("-ts_sundials_mindt","Minimum step size","TSSundialsSetMinTimeStep",cvode->mindt,&cvode->mindt,PETSC_NULL);CHKERRQ(ierr); 412f1cd61daSJed Brown ierr = PetscOptionsReal("-ts_sundials_maxdt","Maximum step size","TSSundialsSetMaxTimeStep",cvode->maxdt,&cvode->maxdt,PETSC_NULL);CHKERRQ(ierr); 4137cb94ee6SHong Zhang ierr = PetscOptionsReal("-ts_sundials_linear_tolerance","Convergence tolerance for linear solve","TSSundialsSetLinearTolerance",cvode->linear_tol,&cvode->linear_tol,&flag);CHKERRQ(ierr); 4147cb94ee6SHong Zhang ierr = PetscOptionsInt("-ts_sundials_gmres_restart","Number of GMRES orthogonalization directions","TSSundialsSetGMRESRestart",cvode->restart,&cvode->restart,&flag);CHKERRQ(ierr); 415acfcf0e5SJed Brown ierr = PetscOptionsBool("-ts_sundials_exact_final_time","Interpolate output to stop exactly at the final time","TSSundialsSetExactFinalTime",cvode->exact_final_time,&cvode->exact_final_time,PETSC_NULL);CHKERRQ(ierr); 416acfcf0e5SJed Brown ierr = PetscOptionsBool("-ts_sundials_monitor_steps","Monitor SUNDIALS internel steps","TSSundialsMonitorInternalSteps",cvode->monitorstep,&cvode->monitorstep,PETSC_NULL);CHKERRQ(ierr); 4177cb94ee6SHong Zhang ierr = PetscOptionsTail();CHKERRQ(ierr); 4187cb94ee6SHong Zhang PetscFunctionReturn(0); 4197cb94ee6SHong Zhang } 4207cb94ee6SHong Zhang 4217cb94ee6SHong Zhang #undef __FUNCT__ 4227cb94ee6SHong Zhang #define __FUNCT__ "TSView_Sundials" 4237cb94ee6SHong Zhang PetscErrorCode TSView_Sundials(TS ts,PetscViewer viewer) 4247cb94ee6SHong Zhang { 4257cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 4267cb94ee6SHong Zhang PetscErrorCode ierr; 4277cb94ee6SHong Zhang char *type; 4287cb94ee6SHong Zhang char atype[] = "Adams"; 4297cb94ee6SHong Zhang char btype[] = "BDF: backward differentiation formula"; 430ace3abfcSBarry Smith PetscBool iascii,isstring; 4312c823083SHong Zhang long int nsteps,its,nfevals,nlinsetups,nfails,itmp; 4322c823083SHong Zhang PetscInt qlast,qcur; 4335d47aee6SHong Zhang PetscReal hinused,hlast,hcur,tcur,tolsfac; 4347cb94ee6SHong Zhang 4357cb94ee6SHong Zhang PetscFunctionBegin; 4367cb94ee6SHong Zhang if (cvode->cvode_type == SUNDIALS_ADAMS) {type = atype;} 4377cb94ee6SHong Zhang else {type = btype;} 4387cb94ee6SHong Zhang 4392692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 4402692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSTRING,&isstring);CHKERRQ(ierr); 4417cb94ee6SHong Zhang if (iascii) { 4427cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials integrater does not use SNES!\n");CHKERRQ(ierr); 4437cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials integrater type %s\n",type);CHKERRQ(ierr); 4447cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials abs tol %g rel tol %g\n",cvode->abstol,cvode->reltol);CHKERRQ(ierr); 4457cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials linear solver tolerance factor %g\n",cvode->linear_tol);CHKERRQ(ierr); 4467cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials GMRES max iterations (same as restart in SUNDIALS) %D\n",cvode->restart);CHKERRQ(ierr); 4477cb94ee6SHong Zhang if (cvode->gtype == SUNDIALS_MODIFIED_GS) { 4487cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials using modified Gram-Schmidt for orthogonalization in GMRES\n");CHKERRQ(ierr); 4497cb94ee6SHong Zhang } else { 4507cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials using unmodified (classical) Gram-Schmidt for orthogonalization in GMRES\n");CHKERRQ(ierr); 4517cb94ee6SHong Zhang } 452f1cd61daSJed Brown if (cvode->mindt > 0) {ierr = PetscViewerASCIIPrintf(viewer,"Sundials minimum time step %g\n",cvode->mindt);CHKERRQ(ierr);} 453f1cd61daSJed Brown if (cvode->maxdt > 0) {ierr = PetscViewerASCIIPrintf(viewer,"Sundials maximum time step %g\n",cvode->maxdt);CHKERRQ(ierr);} 4542c823083SHong Zhang 4555d47aee6SHong Zhang /* Outputs from CVODE, CVSPILS */ 4565d47aee6SHong Zhang ierr = CVodeGetTolScaleFactor(cvode->mem,&tolsfac);CHKERRQ(ierr); 4575d47aee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials suggested factor for tolerance scaling %g\n",tolsfac);CHKERRQ(ierr); 4582c823083SHong Zhang ierr = CVodeGetIntegratorStats(cvode->mem,&nsteps,&nfevals, 4592c823083SHong Zhang &nlinsetups,&nfails,&qlast,&qcur, 4602c823083SHong Zhang &hinused,&hlast,&hcur,&tcur);CHKERRQ(ierr); 4612c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials cumulative number of internal steps %D\n",nsteps);CHKERRQ(ierr); 4622c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of calls to rhs function %D\n",nfevals);CHKERRQ(ierr); 4632c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of calls to linear solver setup function %D\n",nlinsetups);CHKERRQ(ierr); 4642c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of error test failures %D\n",nfails);CHKERRQ(ierr); 4652c823083SHong Zhang 4662c823083SHong Zhang ierr = CVodeGetNonlinSolvStats(cvode->mem,&its,&nfails);CHKERRQ(ierr); 4672c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of nonlinear solver iterations %D\n",its);CHKERRQ(ierr); 4682c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of nonlinear convergence failure %D\n",nfails);CHKERRQ(ierr); 4692c823083SHong Zhang 4702c823083SHong Zhang ierr = CVSpilsGetNumLinIters(cvode->mem, &its);CHKERRQ(ierr); /* its = no. of calls to TSPrecond_Sundials() */ 4712c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of linear iterations %D\n",its);CHKERRQ(ierr); 4722c823083SHong Zhang ierr = CVSpilsGetNumConvFails(cvode->mem,&itmp);CHKERRQ(ierr); 4732c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of linear convergence failures %D\n",itmp);CHKERRQ(ierr); 4742c823083SHong Zhang ierr = CVSpilsGetNumPrecEvals(cvode->mem,&itmp);CHKERRQ(ierr); 4752c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of preconditioner evaluations %D\n",itmp);CHKERRQ(ierr); 4762c823083SHong Zhang ierr = CVSpilsGetNumPrecSolves(cvode->mem,&itmp);CHKERRQ(ierr); 4772c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of preconditioner solves %D\n",itmp);CHKERRQ(ierr); 4782c823083SHong Zhang ierr = CVSpilsGetNumJtimesEvals(cvode->mem,&itmp);CHKERRQ(ierr); 4792c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of Jacobian-vector product evaluations %D\n",itmp);CHKERRQ(ierr); 4802c823083SHong Zhang ierr = CVSpilsGetNumRhsEvals(cvode->mem,&itmp);CHKERRQ(ierr); 4812c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of rhs calls for finite diff. Jacobian-vector evals %D\n",itmp);CHKERRQ(ierr); 4827cb94ee6SHong Zhang } else if (isstring) { 4837cb94ee6SHong Zhang ierr = PetscViewerStringSPrintf(viewer,"Sundials type %s",type);CHKERRQ(ierr); 4847cb94ee6SHong Zhang } else { 485e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by TS Sundials",((PetscObject)viewer)->type_name); 4867cb94ee6SHong Zhang } 4877cb94ee6SHong Zhang ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); 4887cb94ee6SHong Zhang ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 4897cb94ee6SHong Zhang PetscFunctionReturn(0); 4907cb94ee6SHong Zhang } 4917cb94ee6SHong Zhang 4927cb94ee6SHong Zhang 4937cb94ee6SHong Zhang /* --------------------------------------------------------------------------*/ 4947cb94ee6SHong Zhang EXTERN_C_BEGIN 4957cb94ee6SHong Zhang #undef __FUNCT__ 4967cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetType_Sundials" 4977087cfbeSBarry Smith PetscErrorCode TSSundialsSetType_Sundials(TS ts,TSSundialsLmmType type) 4987cb94ee6SHong Zhang { 4997cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5007cb94ee6SHong Zhang 5017cb94ee6SHong Zhang PetscFunctionBegin; 5027cb94ee6SHong Zhang cvode->cvode_type = type; 5037cb94ee6SHong Zhang PetscFunctionReturn(0); 5047cb94ee6SHong Zhang } 5057cb94ee6SHong Zhang EXTERN_C_END 5067cb94ee6SHong Zhang 5077cb94ee6SHong Zhang EXTERN_C_BEGIN 5087cb94ee6SHong Zhang #undef __FUNCT__ 5097cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGMRESRestart_Sundials" 5107087cfbeSBarry Smith PetscErrorCode TSSundialsSetGMRESRestart_Sundials(TS ts,int restart) 5117cb94ee6SHong Zhang { 5127cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5137cb94ee6SHong Zhang 5147cb94ee6SHong Zhang PetscFunctionBegin; 5157cb94ee6SHong Zhang cvode->restart = restart; 5167cb94ee6SHong Zhang PetscFunctionReturn(0); 5177cb94ee6SHong Zhang } 5187cb94ee6SHong Zhang EXTERN_C_END 5197cb94ee6SHong Zhang 5207cb94ee6SHong Zhang EXTERN_C_BEGIN 5217cb94ee6SHong Zhang #undef __FUNCT__ 5227cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetLinearTolerance_Sundials" 5237087cfbeSBarry Smith PetscErrorCode TSSundialsSetLinearTolerance_Sundials(TS ts,double tol) 5247cb94ee6SHong Zhang { 5257cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5267cb94ee6SHong Zhang 5277cb94ee6SHong Zhang PetscFunctionBegin; 5287cb94ee6SHong Zhang cvode->linear_tol = tol; 5297cb94ee6SHong Zhang PetscFunctionReturn(0); 5307cb94ee6SHong Zhang } 5317cb94ee6SHong Zhang EXTERN_C_END 5327cb94ee6SHong Zhang 5337cb94ee6SHong Zhang EXTERN_C_BEGIN 5347cb94ee6SHong Zhang #undef __FUNCT__ 5357cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGramSchmidtType_Sundials" 5367087cfbeSBarry Smith PetscErrorCode TSSundialsSetGramSchmidtType_Sundials(TS ts,TSSundialsGramSchmidtType type) 5377cb94ee6SHong Zhang { 5387cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5397cb94ee6SHong Zhang 5407cb94ee6SHong Zhang PetscFunctionBegin; 5417cb94ee6SHong Zhang cvode->gtype = type; 5427cb94ee6SHong Zhang PetscFunctionReturn(0); 5437cb94ee6SHong Zhang } 5447cb94ee6SHong Zhang EXTERN_C_END 5457cb94ee6SHong Zhang 5467cb94ee6SHong Zhang EXTERN_C_BEGIN 5477cb94ee6SHong Zhang #undef __FUNCT__ 5487cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetTolerance_Sundials" 5497087cfbeSBarry Smith PetscErrorCode TSSundialsSetTolerance_Sundials(TS ts,double aabs,double rel) 5507cb94ee6SHong Zhang { 5517cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5527cb94ee6SHong Zhang 5537cb94ee6SHong Zhang PetscFunctionBegin; 5547cb94ee6SHong Zhang if (aabs != PETSC_DECIDE) cvode->abstol = aabs; 5557cb94ee6SHong Zhang if (rel != PETSC_DECIDE) cvode->reltol = rel; 5567cb94ee6SHong Zhang PetscFunctionReturn(0); 5577cb94ee6SHong Zhang } 5587cb94ee6SHong Zhang EXTERN_C_END 5597cb94ee6SHong Zhang 5607cb94ee6SHong Zhang EXTERN_C_BEGIN 5617cb94ee6SHong Zhang #undef __FUNCT__ 562f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMinTimeStep_Sundials" 5637087cfbeSBarry Smith PetscErrorCode TSSundialsSetMinTimeStep_Sundials(TS ts,PetscReal mindt) 564f1cd61daSJed Brown { 565f1cd61daSJed Brown TS_Sundials *cvode = (TS_Sundials*)ts->data; 566f1cd61daSJed Brown 567f1cd61daSJed Brown PetscFunctionBegin; 568f1cd61daSJed Brown cvode->mindt = mindt; 569f1cd61daSJed Brown PetscFunctionReturn(0); 570f1cd61daSJed Brown } 571f1cd61daSJed Brown EXTERN_C_END 572f1cd61daSJed Brown 573f1cd61daSJed Brown EXTERN_C_BEGIN 574f1cd61daSJed Brown #undef __FUNCT__ 575f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMaxTimeStep_Sundials" 5767087cfbeSBarry Smith PetscErrorCode TSSundialsSetMaxTimeStep_Sundials(TS ts,PetscReal maxdt) 577f1cd61daSJed Brown { 578f1cd61daSJed Brown TS_Sundials *cvode = (TS_Sundials*)ts->data; 579f1cd61daSJed Brown 580f1cd61daSJed Brown PetscFunctionBegin; 581f1cd61daSJed Brown cvode->maxdt = maxdt; 582f1cd61daSJed Brown PetscFunctionReturn(0); 583f1cd61daSJed Brown } 584f1cd61daSJed Brown EXTERN_C_END 585f1cd61daSJed Brown 586f1cd61daSJed Brown EXTERN_C_BEGIN 587f1cd61daSJed Brown #undef __FUNCT__ 5887cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetPC_Sundials" 5897087cfbeSBarry Smith PetscErrorCode TSSundialsGetPC_Sundials(TS ts,PC *pc) 5907cb94ee6SHong Zhang { 591*dcbc6d53SSean Farley SNES snes; 592*dcbc6d53SSean Farley KSP ksp; 593*dcbc6d53SSean Farley PetscErrorCode ierr; 5947cb94ee6SHong Zhang 5957cb94ee6SHong Zhang PetscFunctionBegin; 596*dcbc6d53SSean Farley ierr = TSGetSNES(ts,&snes);CHKERRQ(ierr); 597*dcbc6d53SSean Farley ierr = SNESGetKSP(snes,&ksp);CHKERRQ(ierr); 598*dcbc6d53SSean Farley ierr = KSPGetPC(ksp,pc); CHKERRQ(ierr); 5997cb94ee6SHong Zhang PetscFunctionReturn(0); 6007cb94ee6SHong Zhang } 6017cb94ee6SHong Zhang EXTERN_C_END 6027cb94ee6SHong Zhang 6037cb94ee6SHong Zhang EXTERN_C_BEGIN 6047cb94ee6SHong Zhang #undef __FUNCT__ 6057cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetIterations_Sundials" 6067087cfbeSBarry Smith PetscErrorCode TSSundialsGetIterations_Sundials(TS ts,int *nonlin,int *lin) 6077cb94ee6SHong Zhang { 6087cb94ee6SHong Zhang PetscFunctionBegin; 6092c823083SHong Zhang if (nonlin) *nonlin = ts->nonlinear_its; 6102c823083SHong Zhang if (lin) *lin = ts->linear_its; 6117cb94ee6SHong Zhang PetscFunctionReturn(0); 6127cb94ee6SHong Zhang } 6137cb94ee6SHong Zhang EXTERN_C_END 6147cb94ee6SHong Zhang 6157cb94ee6SHong Zhang EXTERN_C_BEGIN 6167cb94ee6SHong Zhang #undef __FUNCT__ 6177cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetExactFinalTime_Sundials" 6187087cfbeSBarry Smith PetscErrorCode TSSundialsSetExactFinalTime_Sundials(TS ts,PetscBool s) 6197cb94ee6SHong Zhang { 6207cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 6217cb94ee6SHong Zhang 6227cb94ee6SHong Zhang PetscFunctionBegin; 6237cb94ee6SHong Zhang cvode->exact_final_time = s; 6247cb94ee6SHong Zhang PetscFunctionReturn(0); 6257cb94ee6SHong Zhang } 6267cb94ee6SHong Zhang EXTERN_C_END 6272bfc04deSHong Zhang 6282bfc04deSHong Zhang EXTERN_C_BEGIN 6292bfc04deSHong Zhang #undef __FUNCT__ 6302bfc04deSHong Zhang #define __FUNCT__ "TSSundialsMonitorInternalSteps_Sundials" 6317087cfbeSBarry Smith PetscErrorCode TSSundialsMonitorInternalSteps_Sundials(TS ts,PetscBool s) 6322bfc04deSHong Zhang { 6332bfc04deSHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 6342bfc04deSHong Zhang 6352bfc04deSHong Zhang PetscFunctionBegin; 6362bfc04deSHong Zhang cvode->monitorstep = s; 6372bfc04deSHong Zhang PetscFunctionReturn(0); 6382bfc04deSHong Zhang } 6392bfc04deSHong Zhang EXTERN_C_END 6407cb94ee6SHong Zhang /* -------------------------------------------------------------------------------------------*/ 6417cb94ee6SHong Zhang 6427cb94ee6SHong Zhang #undef __FUNCT__ 6437cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetIterations" 6447cb94ee6SHong Zhang /*@C 6457cb94ee6SHong Zhang TSSundialsGetIterations - Gets the number of nonlinear and linear iterations used so far by Sundials. 6467cb94ee6SHong Zhang 6477cb94ee6SHong Zhang Not Collective 6487cb94ee6SHong Zhang 6497cb94ee6SHong Zhang Input parameters: 6507cb94ee6SHong Zhang . ts - the time-step context 6517cb94ee6SHong Zhang 6527cb94ee6SHong Zhang Output Parameters: 6537cb94ee6SHong Zhang + nonlin - number of nonlinear iterations 6547cb94ee6SHong Zhang - lin - number of linear iterations 6557cb94ee6SHong Zhang 6567cb94ee6SHong Zhang Level: advanced 6577cb94ee6SHong Zhang 6587cb94ee6SHong Zhang Notes: 6597cb94ee6SHong Zhang These return the number since the creation of the TS object 6607cb94ee6SHong Zhang 6617cb94ee6SHong Zhang .keywords: non-linear iterations, linear iterations 6627cb94ee6SHong Zhang 6637cb94ee6SHong Zhang .seealso: TSSundialsSetType(), TSSundialsSetGMRESRestart(), 6647cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 6657cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 666f1cd61daSJed Brown TSSundialsSetLinearTolerance(), TSSundialsGetPC(), TSSundialsSetExactFinalTime() 6677cb94ee6SHong Zhang 6687cb94ee6SHong Zhang @*/ 6697087cfbeSBarry Smith PetscErrorCode TSSundialsGetIterations(TS ts,int *nonlin,int *lin) 6707cb94ee6SHong Zhang { 6714ac538c5SBarry Smith PetscErrorCode ierr; 6727cb94ee6SHong Zhang 6737cb94ee6SHong Zhang PetscFunctionBegin; 6744ac538c5SBarry Smith ierr = PetscUseMethod(ts,"TSSundialsGetIterations_C",(TS,int*,int*),(ts,nonlin,lin));CHKERRQ(ierr); 6757cb94ee6SHong Zhang PetscFunctionReturn(0); 6767cb94ee6SHong Zhang } 6777cb94ee6SHong Zhang 6787cb94ee6SHong Zhang #undef __FUNCT__ 6797cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetType" 6807cb94ee6SHong Zhang /*@ 6817cb94ee6SHong Zhang TSSundialsSetType - Sets the method that Sundials will use for integration. 6827cb94ee6SHong Zhang 6833f9fe445SBarry Smith Logically Collective on TS 6847cb94ee6SHong Zhang 6857cb94ee6SHong Zhang Input parameters: 6867cb94ee6SHong Zhang + ts - the time-step context 6877cb94ee6SHong Zhang - type - one of SUNDIALS_ADAMS or SUNDIALS_BDF 6887cb94ee6SHong Zhang 6897cb94ee6SHong Zhang Level: intermediate 6907cb94ee6SHong Zhang 6917cb94ee6SHong Zhang .keywords: Adams, backward differentiation formula 6927cb94ee6SHong Zhang 6937cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetGMRESRestart(), 6947cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 6957cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 6967cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 6977cb94ee6SHong Zhang TSSundialsSetExactFinalTime() 6987cb94ee6SHong Zhang @*/ 6997087cfbeSBarry Smith PetscErrorCode TSSundialsSetType(TS ts,TSSundialsLmmType type) 7007cb94ee6SHong Zhang { 7014ac538c5SBarry Smith PetscErrorCode ierr; 7027cb94ee6SHong Zhang 7037cb94ee6SHong Zhang PetscFunctionBegin; 7044ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetType_C",(TS,TSSundialsLmmType),(ts,type));CHKERRQ(ierr); 7057cb94ee6SHong Zhang PetscFunctionReturn(0); 7067cb94ee6SHong Zhang } 7077cb94ee6SHong Zhang 7087cb94ee6SHong Zhang #undef __FUNCT__ 7097cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGMRESRestart" 7107cb94ee6SHong Zhang /*@ 7117cb94ee6SHong Zhang TSSundialsSetGMRESRestart - Sets the dimension of the Krylov space used by 7127cb94ee6SHong Zhang GMRES in the linear solver in SUNDIALS. SUNDIALS DOES NOT use restarted GMRES so 7137cb94ee6SHong Zhang this is ALSO the maximum number of GMRES steps that will be used. 7147cb94ee6SHong Zhang 7153f9fe445SBarry Smith Logically Collective on TS 7167cb94ee6SHong Zhang 7177cb94ee6SHong Zhang Input parameters: 7187cb94ee6SHong Zhang + ts - the time-step context 7197cb94ee6SHong Zhang - restart - number of direction vectors (the restart size). 7207cb94ee6SHong Zhang 7217cb94ee6SHong Zhang Level: advanced 7227cb94ee6SHong Zhang 7237cb94ee6SHong Zhang .keywords: GMRES, restart 7247cb94ee6SHong Zhang 7257cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), 7267cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 7277cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 7287cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 7297cb94ee6SHong Zhang TSSundialsSetExactFinalTime() 7307cb94ee6SHong Zhang 7317cb94ee6SHong Zhang @*/ 7327087cfbeSBarry Smith PetscErrorCode TSSundialsSetGMRESRestart(TS ts,int restart) 7337cb94ee6SHong Zhang { 7344ac538c5SBarry Smith PetscErrorCode ierr; 7357cb94ee6SHong Zhang 7367cb94ee6SHong Zhang PetscFunctionBegin; 737c5eb9154SBarry Smith PetscValidLogicalCollectiveInt(ts,restart,2); 7384ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetGMRESRestart_C",(TS,int),(ts,restart));CHKERRQ(ierr); 7397cb94ee6SHong Zhang PetscFunctionReturn(0); 7407cb94ee6SHong Zhang } 7417cb94ee6SHong Zhang 7427cb94ee6SHong Zhang #undef __FUNCT__ 7437cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetLinearTolerance" 7447cb94ee6SHong Zhang /*@ 7457cb94ee6SHong Zhang TSSundialsSetLinearTolerance - Sets the tolerance used to solve the linear 7467cb94ee6SHong Zhang system by SUNDIALS. 7477cb94ee6SHong Zhang 7483f9fe445SBarry Smith Logically Collective on TS 7497cb94ee6SHong Zhang 7507cb94ee6SHong Zhang Input parameters: 7517cb94ee6SHong Zhang + ts - the time-step context 7527cb94ee6SHong Zhang - tol - the factor by which the tolerance on the nonlinear solver is 7537cb94ee6SHong Zhang multiplied to get the tolerance on the linear solver, .05 by default. 7547cb94ee6SHong Zhang 7557cb94ee6SHong Zhang Level: advanced 7567cb94ee6SHong Zhang 7577cb94ee6SHong Zhang .keywords: GMRES, linear convergence tolerance, SUNDIALS 7587cb94ee6SHong Zhang 7597cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 7607cb94ee6SHong Zhang TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 7617cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 7627cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 7637cb94ee6SHong Zhang TSSundialsSetExactFinalTime() 7647cb94ee6SHong Zhang 7657cb94ee6SHong Zhang @*/ 7667087cfbeSBarry Smith PetscErrorCode TSSundialsSetLinearTolerance(TS ts,double tol) 7677cb94ee6SHong Zhang { 7684ac538c5SBarry Smith PetscErrorCode ierr; 7697cb94ee6SHong Zhang 7707cb94ee6SHong Zhang PetscFunctionBegin; 771c5eb9154SBarry Smith PetscValidLogicalCollectiveReal(ts,tol,2); 7724ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetLinearTolerance_C",(TS,double),(ts,tol));CHKERRQ(ierr); 7737cb94ee6SHong Zhang PetscFunctionReturn(0); 7747cb94ee6SHong Zhang } 7757cb94ee6SHong Zhang 7767cb94ee6SHong Zhang #undef __FUNCT__ 7777cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGramSchmidtType" 7787cb94ee6SHong Zhang /*@ 7797cb94ee6SHong Zhang TSSundialsSetGramSchmidtType - Sets type of orthogonalization used 7807cb94ee6SHong Zhang in GMRES method by SUNDIALS linear solver. 7817cb94ee6SHong Zhang 7823f9fe445SBarry Smith Logically Collective on TS 7837cb94ee6SHong Zhang 7847cb94ee6SHong Zhang Input parameters: 7857cb94ee6SHong Zhang + ts - the time-step context 7867cb94ee6SHong Zhang - type - either SUNDIALS_MODIFIED_GS or SUNDIALS_CLASSICAL_GS 7877cb94ee6SHong Zhang 7887cb94ee6SHong Zhang Level: advanced 7897cb94ee6SHong Zhang 7907cb94ee6SHong Zhang .keywords: Sundials, orthogonalization 7917cb94ee6SHong Zhang 7927cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 7937cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), 7947cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 7957cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 7967cb94ee6SHong Zhang TSSundialsSetExactFinalTime() 7977cb94ee6SHong Zhang 7987cb94ee6SHong Zhang @*/ 7997087cfbeSBarry Smith PetscErrorCode TSSundialsSetGramSchmidtType(TS ts,TSSundialsGramSchmidtType type) 8007cb94ee6SHong Zhang { 8014ac538c5SBarry Smith PetscErrorCode ierr; 8027cb94ee6SHong Zhang 8037cb94ee6SHong Zhang PetscFunctionBegin; 8044ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetGramSchmidtType_C",(TS,TSSundialsGramSchmidtType),(ts,type));CHKERRQ(ierr); 8057cb94ee6SHong Zhang PetscFunctionReturn(0); 8067cb94ee6SHong Zhang } 8077cb94ee6SHong Zhang 8087cb94ee6SHong Zhang #undef __FUNCT__ 8097cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetTolerance" 8107cb94ee6SHong Zhang /*@ 8117cb94ee6SHong Zhang TSSundialsSetTolerance - Sets the absolute and relative tolerance used by 8127cb94ee6SHong Zhang Sundials for error control. 8137cb94ee6SHong Zhang 8143f9fe445SBarry Smith Logically Collective on TS 8157cb94ee6SHong Zhang 8167cb94ee6SHong Zhang Input parameters: 8177cb94ee6SHong Zhang + ts - the time-step context 8187cb94ee6SHong Zhang . aabs - the absolute tolerance 8197cb94ee6SHong Zhang - rel - the relative tolerance 8207cb94ee6SHong Zhang 8217cb94ee6SHong Zhang See the Cvode/Sundials users manual for exact details on these parameters. Essentially 8227cb94ee6SHong Zhang these regulate the size of the error for a SINGLE timestep. 8237cb94ee6SHong Zhang 8247cb94ee6SHong Zhang Level: intermediate 8257cb94ee6SHong Zhang 8267cb94ee6SHong Zhang .keywords: Sundials, tolerance 8277cb94ee6SHong Zhang 8287cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8297cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), 8307cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8317cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 8327cb94ee6SHong Zhang TSSundialsSetExactFinalTime() 8337cb94ee6SHong Zhang 8347cb94ee6SHong Zhang @*/ 8357087cfbeSBarry Smith PetscErrorCode TSSundialsSetTolerance(TS ts,double aabs,double rel) 8367cb94ee6SHong Zhang { 8374ac538c5SBarry Smith PetscErrorCode ierr; 8387cb94ee6SHong Zhang 8397cb94ee6SHong Zhang PetscFunctionBegin; 8404ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetTolerance_C",(TS,double,double),(ts,aabs,rel));CHKERRQ(ierr); 8417cb94ee6SHong Zhang PetscFunctionReturn(0); 8427cb94ee6SHong Zhang } 8437cb94ee6SHong Zhang 8447cb94ee6SHong Zhang #undef __FUNCT__ 8457cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetPC" 8467cb94ee6SHong Zhang /*@ 8477cb94ee6SHong Zhang TSSundialsGetPC - Extract the PC context from a time-step context for Sundials. 8487cb94ee6SHong Zhang 8497cb94ee6SHong Zhang Input Parameter: 8507cb94ee6SHong Zhang . ts - the time-step context 8517cb94ee6SHong Zhang 8527cb94ee6SHong Zhang Output Parameter: 8537cb94ee6SHong Zhang . pc - the preconditioner context 8547cb94ee6SHong Zhang 8557cb94ee6SHong Zhang Level: advanced 8567cb94ee6SHong Zhang 8577cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8587cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 8597cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8607cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance() 8617cb94ee6SHong Zhang @*/ 8627087cfbeSBarry Smith PetscErrorCode TSSundialsGetPC(TS ts,PC *pc) 8637cb94ee6SHong Zhang { 8644ac538c5SBarry Smith PetscErrorCode ierr; 8657cb94ee6SHong Zhang 8667cb94ee6SHong Zhang PetscFunctionBegin; 8674ac538c5SBarry Smith ierr = PetscUseMethod(ts,"TSSundialsGetPC_C",(TS,PC *),(ts,pc));CHKERRQ(ierr); 8687cb94ee6SHong Zhang PetscFunctionReturn(0); 8697cb94ee6SHong Zhang } 8707cb94ee6SHong Zhang 8717cb94ee6SHong Zhang #undef __FUNCT__ 8727cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetExactFinalTime" 8737cb94ee6SHong Zhang /*@ 8747cb94ee6SHong Zhang TSSundialsSetExactFinalTime - Determines if Sundials interpolates solution to the 8757cb94ee6SHong Zhang exact final time requested by the user or just returns it at the final time 8767cb94ee6SHong Zhang it computed. (Defaults to true). 8777cb94ee6SHong Zhang 8787cb94ee6SHong Zhang Input Parameter: 8797cb94ee6SHong Zhang + ts - the time-step context 8807cb94ee6SHong Zhang - ft - PETSC_TRUE if interpolates, else PETSC_FALSE 8817cb94ee6SHong Zhang 8827cb94ee6SHong Zhang Level: beginner 8837cb94ee6SHong Zhang 8847cb94ee6SHong Zhang .seealso:TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8857cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 8867cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8877cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC() 8887cb94ee6SHong Zhang @*/ 8897087cfbeSBarry Smith PetscErrorCode TSSundialsSetExactFinalTime(TS ts,PetscBool ft) 8907cb94ee6SHong Zhang { 8914ac538c5SBarry Smith PetscErrorCode ierr; 8927cb94ee6SHong Zhang 8937cb94ee6SHong Zhang PetscFunctionBegin; 8944ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetExactFinalTime_C",(TS,PetscBool),(ts,ft));CHKERRQ(ierr); 8957cb94ee6SHong Zhang PetscFunctionReturn(0); 8967cb94ee6SHong Zhang } 8977cb94ee6SHong Zhang 8982bfc04deSHong Zhang #undef __FUNCT__ 899f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMinTimeStep" 900f1cd61daSJed Brown /*@ 901f1cd61daSJed Brown TSSundialsSetMinTimeStep - Smallest time step to be chosen by the adaptive controller. 902f1cd61daSJed Brown 903f1cd61daSJed Brown Input Parameter: 904f1cd61daSJed Brown + ts - the time-step context 905f1cd61daSJed Brown - mindt - lowest time step if positive, negative to deactivate 906f1cd61daSJed Brown 907fc6b9e64SJed Brown Note: 908fc6b9e64SJed Brown Sundials will error if it is not possible to keep the estimated truncation error below 909fc6b9e64SJed Brown the tolerance set with TSSundialsSetTolerance() without going below this step size. 910fc6b9e64SJed Brown 911f1cd61daSJed Brown Level: beginner 912f1cd61daSJed Brown 913f1cd61daSJed Brown .seealso: TSSundialsSetType(), TSSundialsSetTolerance(), 914f1cd61daSJed Brown @*/ 9157087cfbeSBarry Smith PetscErrorCode TSSundialsSetMinTimeStep(TS ts,PetscReal mindt) 916f1cd61daSJed Brown { 9174ac538c5SBarry Smith PetscErrorCode ierr; 918f1cd61daSJed Brown 919f1cd61daSJed Brown PetscFunctionBegin; 9204ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetMinTimeStep_C",(TS,PetscReal),(ts,mindt));CHKERRQ(ierr); 921f1cd61daSJed Brown PetscFunctionReturn(0); 922f1cd61daSJed Brown } 923f1cd61daSJed Brown 924f1cd61daSJed Brown #undef __FUNCT__ 925f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMaxTimeStep" 926f1cd61daSJed Brown /*@ 927f1cd61daSJed Brown TSSundialsSetMaxTimeStep - Largest time step to be chosen by the adaptive controller. 928f1cd61daSJed Brown 929f1cd61daSJed Brown Input Parameter: 930f1cd61daSJed Brown + ts - the time-step context 931f1cd61daSJed Brown - maxdt - lowest time step if positive, negative to deactivate 932f1cd61daSJed Brown 933f1cd61daSJed Brown Level: beginner 934f1cd61daSJed Brown 935f1cd61daSJed Brown .seealso: TSSundialsSetType(), TSSundialsSetTolerance(), 936f1cd61daSJed Brown @*/ 9377087cfbeSBarry Smith PetscErrorCode TSSundialsSetMaxTimeStep(TS ts,PetscReal maxdt) 938f1cd61daSJed Brown { 9394ac538c5SBarry Smith PetscErrorCode ierr; 940f1cd61daSJed Brown 941f1cd61daSJed Brown PetscFunctionBegin; 9424ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetMaxTimeStep_C",(TS,PetscReal),(ts,maxdt));CHKERRQ(ierr); 943f1cd61daSJed Brown PetscFunctionReturn(0); 944f1cd61daSJed Brown } 945f1cd61daSJed Brown 946f1cd61daSJed Brown #undef __FUNCT__ 9472bfc04deSHong Zhang #define __FUNCT__ "TSSundialsMonitorInternalSteps" 9482bfc04deSHong Zhang /*@ 9492bfc04deSHong Zhang TSSundialsMonitorInternalSteps - Monitor Sundials internal steps (Defaults to false). 9502bfc04deSHong Zhang 9512bfc04deSHong Zhang Input Parameter: 9522bfc04deSHong Zhang + ts - the time-step context 9532bfc04deSHong Zhang - ft - PETSC_TRUE if monitor, else PETSC_FALSE 9542bfc04deSHong Zhang 9552bfc04deSHong Zhang Level: beginner 9562bfc04deSHong Zhang 9572bfc04deSHong Zhang .seealso:TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 9582bfc04deSHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 9592bfc04deSHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 9602bfc04deSHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC() 9612bfc04deSHong Zhang @*/ 9627087cfbeSBarry Smith PetscErrorCode TSSundialsMonitorInternalSteps(TS ts,PetscBool ft) 9632bfc04deSHong Zhang { 9644ac538c5SBarry Smith PetscErrorCode ierr; 9652bfc04deSHong Zhang 9662bfc04deSHong Zhang PetscFunctionBegin; 9674ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsMonitorInternalSteps_C",(TS,PetscBool),(ts,ft));CHKERRQ(ierr); 9682bfc04deSHong Zhang PetscFunctionReturn(0); 9692bfc04deSHong Zhang } 9707cb94ee6SHong Zhang /* -------------------------------------------------------------------------------------------*/ 9717cb94ee6SHong Zhang /*MC 97296f5712cSJed Brown TSSUNDIALS - ODE solver using the LLNL CVODE/SUNDIALS package (now called SUNDIALS) 9737cb94ee6SHong Zhang 9747cb94ee6SHong Zhang Options Database: 9757cb94ee6SHong Zhang + -ts_sundials_type <bdf,adams> 9767cb94ee6SHong Zhang . -ts_sundials_gramschmidt_type <modified, classical> - type of orthogonalization inside GMRES 9777cb94ee6SHong Zhang . -ts_sundials_atol <tol> - Absolute tolerance for convergence 9787cb94ee6SHong Zhang . -ts_sundials_rtol <tol> - Relative tolerance for convergence 9797cb94ee6SHong Zhang . -ts_sundials_linear_tolerance <tol> 9807cb94ee6SHong Zhang . -ts_sundials_gmres_restart <restart> - Number of GMRES orthogonalization directions 98116016685SHong Zhang . -ts_sundials_exact_final_time - Interpolate output to stop exactly at the final time 98216016685SHong Zhang - -ts_sundials_monitor_steps - Monitor SUNDIALS internel steps 98316016685SHong Zhang 9847cb94ee6SHong Zhang 9857cb94ee6SHong Zhang Notes: This uses its own nonlinear solver and Krylov method so PETSc SNES and KSP options do not apply 9867cb94ee6SHong Zhang only PETSc PC options 9877cb94ee6SHong Zhang 9887cb94ee6SHong Zhang Level: beginner 9897cb94ee6SHong Zhang 9907cb94ee6SHong Zhang .seealso: TSCreate(), TS, TSSetType(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), TSSundialsSetLinearTolerance(), 9917cb94ee6SHong Zhang TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), TSSundialsGetPC(), TSSundialsGetIterations(), TSSundialsSetExactFinalTime() 9927cb94ee6SHong Zhang 9937cb94ee6SHong Zhang M*/ 9947cb94ee6SHong Zhang EXTERN_C_BEGIN 9957cb94ee6SHong Zhang #undef __FUNCT__ 9967cb94ee6SHong Zhang #define __FUNCT__ "TSCreate_Sundials" 9977087cfbeSBarry Smith PetscErrorCode TSCreate_Sundials(TS ts) 9987cb94ee6SHong Zhang { 9997cb94ee6SHong Zhang TS_Sundials *cvode; 10007cb94ee6SHong Zhang PetscErrorCode ierr; 10017cb94ee6SHong Zhang 10027cb94ee6SHong Zhang PetscFunctionBegin; 1003277b19d0SLisandro Dalcin ts->ops->reset = TSReset_Sundials; 100428adb3f7SHong Zhang ts->ops->destroy = TSDestroy_Sundials; 100528adb3f7SHong Zhang ts->ops->view = TSView_Sundials; 1006214bc6a2SJed Brown ts->ops->setup = TSSetUp_Sundials; 1007214bc6a2SJed Brown ts->ops->step = TSStep_Sundials; 1008214bc6a2SJed Brown ts->ops->setfromoptions = TSSetFromOptions_Sundials; 10097cb94ee6SHong Zhang 101038f2d2fdSLisandro Dalcin ierr = PetscNewLog(ts,TS_Sundials,&cvode);CHKERRQ(ierr); 10117cb94ee6SHong Zhang ts->data = (void*)cvode; 10126fadb2cdSHong Zhang cvode->cvode_type = SUNDIALS_BDF; 10136fadb2cdSHong Zhang cvode->gtype = SUNDIALS_CLASSICAL_GS; 10147cb94ee6SHong Zhang cvode->restart = 5; 10157cb94ee6SHong Zhang cvode->linear_tol = .05; 10167cb94ee6SHong Zhang 10172bfc04deSHong Zhang cvode->exact_final_time = PETSC_TRUE; 10182bfc04deSHong Zhang cvode->monitorstep = PETSC_FALSE; 10197cb94ee6SHong Zhang 1020a07356b8SSatish Balay ierr = MPI_Comm_dup(((PetscObject)ts)->comm,&(cvode->comm_sundials));CHKERRQ(ierr); 1021f1cd61daSJed Brown 1022f1cd61daSJed Brown cvode->mindt = -1.; 1023f1cd61daSJed Brown cvode->maxdt = -1.; 1024f1cd61daSJed Brown 10257cb94ee6SHong Zhang /* set tolerance for Sundials */ 10267cb94ee6SHong Zhang cvode->reltol = 1e-6; 10272c823083SHong Zhang cvode->abstol = 1e-6; 10287cb94ee6SHong Zhang 10297cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetType_C","TSSundialsSetType_Sundials", 10307cb94ee6SHong Zhang TSSundialsSetType_Sundials);CHKERRQ(ierr); 10317cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetGMRESRestart_C", 10327cb94ee6SHong Zhang "TSSundialsSetGMRESRestart_Sundials", 10337cb94ee6SHong Zhang TSSundialsSetGMRESRestart_Sundials);CHKERRQ(ierr); 10347cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetLinearTolerance_C", 10357cb94ee6SHong Zhang "TSSundialsSetLinearTolerance_Sundials", 10367cb94ee6SHong Zhang TSSundialsSetLinearTolerance_Sundials);CHKERRQ(ierr); 10377cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetGramSchmidtType_C", 10387cb94ee6SHong Zhang "TSSundialsSetGramSchmidtType_Sundials", 10397cb94ee6SHong Zhang TSSundialsSetGramSchmidtType_Sundials);CHKERRQ(ierr); 10407cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetTolerance_C", 10417cb94ee6SHong Zhang "TSSundialsSetTolerance_Sundials", 10427cb94ee6SHong Zhang TSSundialsSetTolerance_Sundials);CHKERRQ(ierr); 1043f1cd61daSJed Brown ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetMinTimeStep_C", 1044f1cd61daSJed Brown "TSSundialsSetMinTimeStep_Sundials", 1045f1cd61daSJed Brown TSSundialsSetMinTimeStep_Sundials);CHKERRQ(ierr); 1046f1cd61daSJed Brown ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetMaxTimeStep_C", 1047f1cd61daSJed Brown "TSSundialsSetMaxTimeStep_Sundials", 1048f1cd61daSJed Brown TSSundialsSetMaxTimeStep_Sundials);CHKERRQ(ierr); 10497cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsGetPC_C", 10507cb94ee6SHong Zhang "TSSundialsGetPC_Sundials", 10517cb94ee6SHong Zhang TSSundialsGetPC_Sundials);CHKERRQ(ierr); 10527cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsGetIterations_C", 10537cb94ee6SHong Zhang "TSSundialsGetIterations_Sundials", 10547cb94ee6SHong Zhang TSSundialsGetIterations_Sundials);CHKERRQ(ierr); 10557cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetExactFinalTime_C", 10567cb94ee6SHong Zhang "TSSundialsSetExactFinalTime_Sundials", 10577cb94ee6SHong Zhang TSSundialsSetExactFinalTime_Sundials);CHKERRQ(ierr); 10582bfc04deSHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsMonitorInternalSteps_C", 10592bfc04deSHong Zhang "TSSundialsMonitorInternalSteps_Sundials", 10602bfc04deSHong Zhang TSSundialsMonitorInternalSteps_Sundials);CHKERRQ(ierr); 10612bfc04deSHong Zhang 10627cb94ee6SHong Zhang PetscFunctionReturn(0); 10637cb94ee6SHong Zhang } 10647cb94ee6SHong Zhang EXTERN_C_END 1065