17cb94ee6SHong Zhang /* 2db268bfaSHong Zhang Provides a PETSc interface to SUNDIALS/CVODE solver. 37cb94ee6SHong Zhang The interface to PVODE (old version of CVODE) was originally contributed 47cb94ee6SHong Zhang by Liyang Xu. It has been redone by Hong Zhang and Dinesh Kaushik. 528adb3f7SHong Zhang 628adb3f7SHong Zhang Reference: sundials-2.4.0/examples/cvode/parallel/cvDiurnal_kry_p.c 77cb94ee6SHong Zhang */ 81c7d2463SJed Brown #include <../src/ts/impls/implicit/sundials/sundials.h> /*I "petscts.h" I*/ 97cb94ee6SHong Zhang 107cb94ee6SHong Zhang /* 117cb94ee6SHong Zhang TSPrecond_Sundials - function that we provide to SUNDIALS to 127cb94ee6SHong Zhang evaluate the preconditioner. 137cb94ee6SHong Zhang */ 14bbd56ea5SKarl Rupp PetscErrorCode TSPrecond_Sundials(realtype tn,N_Vector y,N_Vector fy,booleantype jok,booleantype *jcurPtr, 15bbd56ea5SKarl Rupp realtype _gamma,void *P_data,N_Vector vtemp1,N_Vector vtemp2,N_Vector vtemp3) 167cb94ee6SHong Zhang { 177cb94ee6SHong Zhang TS ts = (TS) P_data; 187cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 19dcbc6d53SSean Farley PC pc; 207cb94ee6SHong Zhang PetscErrorCode ierr; 210679a0aeSJed Brown Mat J,P; 220679a0aeSJed Brown Vec yy = cvode->w1,yydot = cvode->ydot; 230679a0aeSJed Brown PetscReal gm = (PetscReal)_gamma; 247cb94ee6SHong Zhang PetscScalar *y_data; 257cb94ee6SHong Zhang 267cb94ee6SHong Zhang PetscFunctionBegin; 270298fd71SBarry Smith ierr = TSGetIJacobian(ts,&J,&P,NULL,NULL);CHKERRQ(ierr); 287cb94ee6SHong Zhang y_data = (PetscScalar*) N_VGetArrayPointer(y); 297cb94ee6SHong Zhang ierr = VecPlaceArray(yy,y_data);CHKERRQ(ierr); 300679a0aeSJed Brown ierr = VecZeroEntries(yydot);CHKERRQ(ierr); /* The Jacobian is independent of Ydot for ODE which is all that CVode works for */ 310679a0aeSJed Brown /* compute the shifted Jacobian (1/gm)*I + Jrest */ 3209e82e2bSBarry Smith ierr = TSComputeIJacobian(ts,ts->ptime,yy,yydot,1/gm,J,P,PETSC_FALSE);CHKERRQ(ierr); 337cb94ee6SHong Zhang ierr = VecResetArray(yy);CHKERRQ(ierr); 340679a0aeSJed Brown ierr = MatScale(P,gm);CHKERRQ(ierr); /* turn into I-gm*Jrest, J is not used by Sundials */ 357cb94ee6SHong Zhang *jcurPtr = TRUE; 36dcbc6d53SSean Farley ierr = TSSundialsGetPC(ts,&pc);CHKERRQ(ierr); 3709e82e2bSBarry Smith ierr = PCSetOperators(pc,J,P);CHKERRQ(ierr); 387cb94ee6SHong Zhang PetscFunctionReturn(0); 397cb94ee6SHong Zhang } 407cb94ee6SHong Zhang 417cb94ee6SHong Zhang /* 427cb94ee6SHong Zhang TSPSolve_Sundials - routine that we provide to Sundials that applies the preconditioner. 437cb94ee6SHong Zhang */ 444ac7836bSHong Zhang PetscErrorCode TSPSolve_Sundials(realtype tn,N_Vector y,N_Vector fy,N_Vector r,N_Vector z, 454ac7836bSHong Zhang realtype _gamma,realtype delta,int lr,void *P_data,N_Vector vtemp) 467cb94ee6SHong Zhang { 477cb94ee6SHong Zhang TS ts = (TS) P_data; 487cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 49dcbc6d53SSean Farley PC pc; 507cb94ee6SHong Zhang Vec rr = cvode->w1,zz = cvode->w2; 517cb94ee6SHong Zhang PetscErrorCode ierr; 527cb94ee6SHong Zhang PetscScalar *r_data,*z_data; 537cb94ee6SHong Zhang 547cb94ee6SHong Zhang PetscFunctionBegin; 557cb94ee6SHong Zhang /* Make the PETSc work vectors rr and zz point to the arrays in the SUNDIALS vectors r and z respectively*/ 567cb94ee6SHong Zhang r_data = (PetscScalar*) N_VGetArrayPointer(r); 577cb94ee6SHong Zhang z_data = (PetscScalar*) N_VGetArrayPointer(z); 587cb94ee6SHong Zhang ierr = VecPlaceArray(rr,r_data);CHKERRQ(ierr); 597cb94ee6SHong Zhang ierr = VecPlaceArray(zz,z_data);CHKERRQ(ierr); 604ac7836bSHong Zhang 617cb94ee6SHong Zhang /* Solve the Px=r and put the result in zz */ 62dcbc6d53SSean Farley ierr = TSSundialsGetPC(ts,&pc);CHKERRQ(ierr); 637cb94ee6SHong Zhang ierr = PCApply(pc,rr,zz);CHKERRQ(ierr); 647cb94ee6SHong Zhang ierr = VecResetArray(rr);CHKERRQ(ierr); 657cb94ee6SHong Zhang ierr = VecResetArray(zz);CHKERRQ(ierr); 667cb94ee6SHong Zhang PetscFunctionReturn(0); 677cb94ee6SHong Zhang } 687cb94ee6SHong Zhang 697cb94ee6SHong Zhang /* 707cb94ee6SHong Zhang TSFunction_Sundials - routine that we provide to Sundials that applies the right hand side. 717cb94ee6SHong Zhang */ 724ac7836bSHong Zhang int TSFunction_Sundials(realtype t,N_Vector y,N_Vector ydot,void *ctx) 737cb94ee6SHong Zhang { 747cb94ee6SHong Zhang TS ts = (TS) ctx; 755fcef5e4SJed Brown DM dm; 76942e3340SBarry Smith DMTS tsdm; 775fcef5e4SJed Brown TSIFunction ifunction; 78ce94432eSBarry Smith MPI_Comm comm; 797cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 800679a0aeSJed Brown Vec yy = cvode->w1,yyd = cvode->w2,yydot = cvode->ydot; 817cb94ee6SHong Zhang PetscScalar *y_data,*ydot_data; 827cb94ee6SHong Zhang PetscErrorCode ierr; 837cb94ee6SHong Zhang 847cb94ee6SHong Zhang PetscFunctionBegin; 85ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)ts,&comm);CHKERRQ(ierr); 865ff03cf7SDinesh Kaushik /* Make the PETSc work vectors yy and yyd point to the arrays in the SUNDIALS vectors y and ydot respectively*/ 877cb94ee6SHong Zhang y_data = (PetscScalar*) N_VGetArrayPointer(y); 887cb94ee6SHong Zhang ydot_data = (PetscScalar*) N_VGetArrayPointer(ydot); 894ac7836bSHong Zhang ierr = VecPlaceArray(yy,y_data);CHKERRABORT(comm,ierr); 904ac7836bSHong Zhang ierr = VecPlaceArray(yyd,ydot_data);CHKERRABORT(comm,ierr); 914ac7836bSHong Zhang 925fcef5e4SJed Brown /* Now compute the right hand side function, via IFunction unless only the more efficient RHSFunction is set */ 935fcef5e4SJed Brown ierr = TSGetDM(ts,&dm);CHKERRQ(ierr); 94942e3340SBarry Smith ierr = DMGetDMTS(dm,&tsdm);CHKERRQ(ierr); 950298fd71SBarry Smith ierr = DMTSGetIFunction(dm,&ifunction,NULL);CHKERRQ(ierr); 965fcef5e4SJed Brown if (!ifunction) { 97bc0cc02bSJed Brown ierr = TSComputeRHSFunction(ts,t,yy,yyd);CHKERRQ(ierr); 98bc0cc02bSJed Brown } else { /* If rhsfunction is also set, this computes both parts and shifts them to the right */ 99bc0cc02bSJed Brown ierr = VecZeroEntries(yydot);CHKERRQ(ierr); 1000679a0aeSJed Brown ierr = TSComputeIFunction(ts,t,yy,yydot,yyd,PETSC_FALSE);CHKERRABORT(comm,ierr); 1010679a0aeSJed Brown ierr = VecScale(yyd,-1.);CHKERRQ(ierr); 102bc0cc02bSJed Brown } 1037cb94ee6SHong Zhang ierr = VecResetArray(yy);CHKERRABORT(comm,ierr); 1047cb94ee6SHong Zhang ierr = VecResetArray(yyd);CHKERRABORT(comm,ierr); 1054ac7836bSHong Zhang PetscFunctionReturn(0); 1067cb94ee6SHong Zhang } 1077cb94ee6SHong Zhang 1087cb94ee6SHong Zhang /* 109b4eba00bSSean Farley TSStep_Sundials - Calls Sundials to integrate the ODE. 1107cb94ee6SHong Zhang */ 111b4eba00bSSean Farley PetscErrorCode TSStep_Sundials(TS ts) 1127cb94ee6SHong Zhang { 1137cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 1147cb94ee6SHong Zhang PetscErrorCode ierr; 115b4eba00bSSean Farley PetscInt flag; 116be5899b3SLisandro Dalcin long int nits,lits,nsteps; 1177cb94ee6SHong Zhang realtype t,tout; 1187cb94ee6SHong Zhang PetscScalar *y_data; 1197cb94ee6SHong Zhang void *mem; 1207cb94ee6SHong Zhang 1217cb94ee6SHong Zhang PetscFunctionBegin; 12216016685SHong Zhang mem = cvode->mem; 1237cb94ee6SHong Zhang tout = ts->max_time; 1247cb94ee6SHong Zhang ierr = VecGetArray(ts->vec_sol,&y_data);CHKERRQ(ierr); 1257cb94ee6SHong Zhang N_VSetArrayPointer((realtype*)y_data,cvode->y); 1260298fd71SBarry Smith ierr = VecRestoreArray(ts->vec_sol,NULL);CHKERRQ(ierr); 127186e87acSLisandro Dalcin 1289687d888SLisandro Dalcin /* We would like to TSPreStage() and TSPostStage() 1299687d888SLisandro Dalcin * before each stage solve but CVode does not appear to support this. */ 130be5899b3SLisandro Dalcin if (cvode->monitorstep) 131be5899b3SLisandro Dalcin flag = CVode(mem,tout,cvode->y,&t,CV_ONE_STEP); 132be5899b3SLisandro Dalcin else 133be5899b3SLisandro Dalcin flag = CVode(mem,tout,cvode->y,&t,CV_NORMAL); 1349f94935aSHong Zhang 1359f94935aSHong Zhang if (flag) { /* display error message */ 1369f94935aSHong Zhang switch (flag) { 1379f94935aSHong Zhang case CV_ILL_INPUT: 1389f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_ILL_INPUT"); 1399f94935aSHong Zhang break; 1409f94935aSHong Zhang case CV_TOO_CLOSE: 1419f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_CLOSE"); 1429f94935aSHong Zhang break; 1433c7fefeeSJed Brown case CV_TOO_MUCH_WORK: { 1449f94935aSHong Zhang PetscReal tcur; 1459f94935aSHong Zhang ierr = CVodeGetNumSteps(mem,&nsteps);CHKERRQ(ierr); 1469f94935aSHong Zhang ierr = CVodeGetCurrentTime(mem,&tcur);CHKERRQ(ierr); 147be5899b3SLisandro Dalcin SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_MUCH_WORK. At t=%g, nsteps %D exceeds maxstep %D. Increase '-ts_max_steps <>' or modify TSSetDuration()",(double)tcur,nsteps,ts->max_steps); 1483c7fefeeSJed Brown } break; 1499f94935aSHong Zhang case CV_TOO_MUCH_ACC: 1509f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_MUCH_ACC"); 1519f94935aSHong Zhang break; 1529f94935aSHong Zhang case CV_ERR_FAILURE: 1539f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_ERR_FAILURE"); 1549f94935aSHong Zhang break; 1559f94935aSHong Zhang case CV_CONV_FAILURE: 1569f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_CONV_FAILURE"); 1579f94935aSHong Zhang break; 1589f94935aSHong Zhang case CV_LINIT_FAIL: 1599f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LINIT_FAIL"); 1609f94935aSHong Zhang break; 1619f94935aSHong Zhang case CV_LSETUP_FAIL: 1629f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LSETUP_FAIL"); 1639f94935aSHong Zhang break; 1649f94935aSHong Zhang case CV_LSOLVE_FAIL: 1659f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LSOLVE_FAIL"); 1669f94935aSHong Zhang break; 1679f94935aSHong Zhang case CV_RHSFUNC_FAIL: 1689f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_RHSFUNC_FAIL"); 1699f94935aSHong Zhang break; 1709f94935aSHong Zhang case CV_FIRST_RHSFUNC_ERR: 1719f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_FIRST_RHSFUNC_ERR"); 1729f94935aSHong Zhang break; 1739f94935aSHong Zhang case CV_REPTD_RHSFUNC_ERR: 1749f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_REPTD_RHSFUNC_ERR"); 1759f94935aSHong Zhang break; 1769f94935aSHong Zhang case CV_UNREC_RHSFUNC_ERR: 1779f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_UNREC_RHSFUNC_ERR"); 1789f94935aSHong Zhang break; 1799f94935aSHong Zhang case CV_RTFUNC_FAIL: 1809f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_RTFUNC_FAIL"); 1819f94935aSHong Zhang break; 1829f94935aSHong Zhang default: 1839f94935aSHong Zhang SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, flag %d",flag); 1849f94935aSHong Zhang } 1859f94935aSHong Zhang } 1869f94935aSHong Zhang 187be5899b3SLisandro Dalcin /* log inner nonlinear and linear iterations */ 188be5899b3SLisandro Dalcin ierr = CVodeGetNumNonlinSolvIters(mem,&nits);CHKERRQ(ierr); 189be5899b3SLisandro Dalcin ierr = CVSpilsGetNumLinIters(mem,&lits);CHKERRQ(ierr); 190be5899b3SLisandro Dalcin ts->snes_its += nits; ts->ksp_its = lits; 191be5899b3SLisandro Dalcin 1927cb94ee6SHong Zhang /* copy the solution from cvode->y to cvode->update and sol */ 1937cb94ee6SHong Zhang ierr = VecPlaceArray(cvode->w1,y_data);CHKERRQ(ierr); 1947cb94ee6SHong Zhang ierr = VecCopy(cvode->w1,cvode->update);CHKERRQ(ierr); 1957cb94ee6SHong Zhang ierr = VecResetArray(cvode->w1);CHKERRQ(ierr); 196bc0cc02bSJed Brown ierr = VecCopy(cvode->update,ts->vec_sol);CHKERRQ(ierr); 197186e87acSLisandro Dalcin 198186e87acSLisandro Dalcin ts->time_step = t - ts->ptime; 199186e87acSLisandro Dalcin ts->ptime = t; 200186e87acSLisandro Dalcin 2019f94935aSHong Zhang ierr = CVodeGetNumSteps(mem,&nsteps);CHKERRQ(ierr); 202be5899b3SLisandro Dalcin if (!cvode->monitorstep) ts->steps = nsteps - 1; /* TSStep() increments the step counter by one */ 203b4eba00bSSean Farley PetscFunctionReturn(0); 204b4eba00bSSean Farley } 205b4eba00bSSean Farley 206b4eba00bSSean Farley static PetscErrorCode TSInterpolate_Sundials(TS ts,PetscReal t,Vec X) 207b4eba00bSSean Farley { 208b4eba00bSSean Farley TS_Sundials *cvode = (TS_Sundials*)ts->data; 209b4eba00bSSean Farley N_Vector y; 210b4eba00bSSean Farley PetscErrorCode ierr; 211b4eba00bSSean Farley PetscScalar *x_data; 212b4eba00bSSean Farley PetscInt glosize,locsize; 213b4eba00bSSean Farley 214b4eba00bSSean Farley PetscFunctionBegin; 215b4eba00bSSean Farley /* get the vector size */ 216b4eba00bSSean Farley ierr = VecGetSize(X,&glosize);CHKERRQ(ierr); 217b4eba00bSSean Farley ierr = VecGetLocalSize(X,&locsize);CHKERRQ(ierr); 218b4eba00bSSean Farley 219b4eba00bSSean Farley /* allocate the memory for N_Vec y */ 220b4eba00bSSean Farley y = N_VNew_Parallel(cvode->comm_sundials,locsize,glosize); 221b4eba00bSSean Farley if (!y) SETERRQ(PETSC_COMM_SELF,1,"Interpolated y is not allocated"); 222b4eba00bSSean Farley 223b4eba00bSSean Farley ierr = VecGetArray(X,&x_data);CHKERRQ(ierr); 224b4eba00bSSean Farley N_VSetArrayPointer((realtype*)x_data,y); 225b4eba00bSSean Farley ierr = CVodeGetDky(cvode->mem,t,0,y);CHKERRQ(ierr); 226b4eba00bSSean Farley ierr = VecRestoreArray(X,&x_data);CHKERRQ(ierr); 2277cb94ee6SHong Zhang PetscFunctionReturn(0); 2287cb94ee6SHong Zhang } 2297cb94ee6SHong Zhang 230277b19d0SLisandro Dalcin PetscErrorCode TSReset_Sundials(TS ts) 231277b19d0SLisandro Dalcin { 232277b19d0SLisandro Dalcin TS_Sundials *cvode = (TS_Sundials*)ts->data; 233277b19d0SLisandro Dalcin PetscErrorCode ierr; 234277b19d0SLisandro Dalcin 235277b19d0SLisandro Dalcin PetscFunctionBegin; 2365c6b4a3dSJed Brown ierr = VecDestroy(&cvode->update);CHKERRQ(ierr); 2370679a0aeSJed Brown ierr = VecDestroy(&cvode->ydot);CHKERRQ(ierr); 2385c6b4a3dSJed Brown ierr = VecDestroy(&cvode->w1);CHKERRQ(ierr); 2395c6b4a3dSJed Brown ierr = VecDestroy(&cvode->w2);CHKERRQ(ierr); 240bbd56ea5SKarl Rupp if (cvode->mem) CVodeFree(&cvode->mem); 241277b19d0SLisandro Dalcin PetscFunctionReturn(0); 242277b19d0SLisandro Dalcin } 243277b19d0SLisandro Dalcin 2447cb94ee6SHong Zhang PetscErrorCode TSDestroy_Sundials(TS ts) 2457cb94ee6SHong Zhang { 2467cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 2477cb94ee6SHong Zhang PetscErrorCode ierr; 2487cb94ee6SHong Zhang 2497cb94ee6SHong Zhang PetscFunctionBegin; 250277b19d0SLisandro Dalcin ierr = TSReset_Sundials(ts);CHKERRQ(ierr); 251a07356b8SSatish Balay ierr = MPI_Comm_free(&(cvode->comm_sundials));CHKERRQ(ierr); 252277b19d0SLisandro Dalcin ierr = PetscFree(ts->data);CHKERRQ(ierr); 253bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetType_C",NULL);CHKERRQ(ierr); 254bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetMaxl_C",NULL);CHKERRQ(ierr); 255bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetLinearTolerance_C",NULL);CHKERRQ(ierr); 256bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetGramSchmidtType_C",NULL);CHKERRQ(ierr); 257bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetTolerance_C",NULL);CHKERRQ(ierr); 258bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetMinTimeStep_C",NULL);CHKERRQ(ierr); 259bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetMaxTimeStep_C",NULL);CHKERRQ(ierr); 260bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsGetPC_C",NULL);CHKERRQ(ierr); 261bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsGetIterations_C",NULL);CHKERRQ(ierr); 262bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsMonitorInternalSteps_C",NULL);CHKERRQ(ierr); 2637cb94ee6SHong Zhang PetscFunctionReturn(0); 2647cb94ee6SHong Zhang } 2657cb94ee6SHong Zhang 266214bc6a2SJed Brown PetscErrorCode TSSetUp_Sundials(TS ts) 2677cb94ee6SHong Zhang { 2687cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 2697cb94ee6SHong Zhang PetscErrorCode ierr; 27016016685SHong Zhang PetscInt glosize,locsize,i,flag; 2717cb94ee6SHong Zhang PetscScalar *y_data,*parray; 27216016685SHong Zhang void *mem; 273dcbc6d53SSean Farley PC pc; 27419fd82e9SBarry Smith PCType pctype; 275ace3abfcSBarry Smith PetscBool pcnone; 2767cb94ee6SHong Zhang 2777cb94ee6SHong Zhang PetscFunctionBegin; 278236c45dcSShri Abhyankar if (ts->exact_final_time == TS_EXACTFINALTIME_MATCHSTEP) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for exact final time option 'MATCHSTEP' when using Sundials"); 279236c45dcSShri Abhyankar 2807cb94ee6SHong Zhang /* get the vector size */ 2817cb94ee6SHong Zhang ierr = VecGetSize(ts->vec_sol,&glosize);CHKERRQ(ierr); 2827cb94ee6SHong Zhang ierr = VecGetLocalSize(ts->vec_sol,&locsize);CHKERRQ(ierr); 2837cb94ee6SHong Zhang 2847cb94ee6SHong Zhang /* allocate the memory for N_Vec y */ 285a07356b8SSatish Balay cvode->y = N_VNew_Parallel(cvode->comm_sundials,locsize,glosize); 286e32f2f54SBarry Smith if (!cvode->y) SETERRQ(PETSC_COMM_SELF,1,"cvode->y is not allocated"); 2877cb94ee6SHong Zhang 28828adb3f7SHong Zhang /* initialize N_Vec y: copy ts->vec_sol to cvode->y */ 2897cb94ee6SHong Zhang ierr = VecGetArray(ts->vec_sol,&parray);CHKERRQ(ierr); 2907cb94ee6SHong Zhang y_data = (PetscScalar*) N_VGetArrayPointer(cvode->y); 2917cb94ee6SHong Zhang for (i = 0; i < locsize; i++) y_data[i] = parray[i]; 2920298fd71SBarry Smith ierr = VecRestoreArray(ts->vec_sol,NULL);CHKERRQ(ierr); 29342528757SHong Zhang 2947cb94ee6SHong Zhang ierr = VecDuplicate(ts->vec_sol,&cvode->update);CHKERRQ(ierr); 2950679a0aeSJed Brown ierr = VecDuplicate(ts->vec_sol,&cvode->ydot);CHKERRQ(ierr); 2963bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)ts,(PetscObject)cvode->update);CHKERRQ(ierr); 2973bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)ts,(PetscObject)cvode->ydot);CHKERRQ(ierr); 2987cb94ee6SHong Zhang 2997cb94ee6SHong Zhang /* 3007cb94ee6SHong Zhang Create work vectors for the TSPSolve_Sundials() routine. Note these are 3017cb94ee6SHong Zhang allocated with zero space arrays because the actual array space is provided 3027cb94ee6SHong Zhang by Sundials and set using VecPlaceArray(). 3037cb94ee6SHong Zhang */ 304ce94432eSBarry Smith ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)ts),1,locsize,PETSC_DECIDE,0,&cvode->w1);CHKERRQ(ierr); 305ce94432eSBarry Smith ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)ts),1,locsize,PETSC_DECIDE,0,&cvode->w2);CHKERRQ(ierr); 3063bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)ts,(PetscObject)cvode->w1);CHKERRQ(ierr); 3073bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)ts,(PetscObject)cvode->w2);CHKERRQ(ierr); 30816016685SHong Zhang 30916016685SHong Zhang /* Call CVodeCreate to create the solver memory and the use of a Newton iteration */ 31016016685SHong Zhang mem = CVodeCreate(cvode->cvode_type, CV_NEWTON); 311e32f2f54SBarry Smith if (!mem) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"CVodeCreate() fails"); 31216016685SHong Zhang cvode->mem = mem; 31316016685SHong Zhang 31416016685SHong Zhang /* Set the pointer to user-defined data */ 31516016685SHong Zhang flag = CVodeSetUserData(mem, ts); 316e32f2f54SBarry Smith if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeSetUserData() fails"); 31716016685SHong Zhang 318fc6b9e64SJed Brown /* Sundials may choose to use a smaller initial step, but will never use a larger step. */ 319cdbf8f93SLisandro Dalcin flag = CVodeSetInitStep(mem,(realtype)ts->time_step); 320ce94432eSBarry Smith if (flag) SETERRQ(PetscObjectComm((PetscObject)ts),PETSC_ERR_LIB,"CVodeSetInitStep() failed"); 321f1cd61daSJed Brown if (cvode->mindt > 0) { 322f1cd61daSJed Brown flag = CVodeSetMinStep(mem,(realtype)cvode->mindt); 3239f94935aSHong Zhang if (flag) { 324ce94432eSBarry Smith if (flag == CV_MEM_NULL) SETERRQ(PetscObjectComm((PetscObject)ts),PETSC_ERR_LIB,"CVodeSetMinStep() failed, cvode_mem pointer is NULL"); 325ce94432eSBarry Smith else if (flag == CV_ILL_INPUT) SETERRQ(PetscObjectComm((PetscObject)ts),PETSC_ERR_LIB,"CVodeSetMinStep() failed, hmin is nonpositive or it exceeds the maximum allowable step size"); 326ce94432eSBarry Smith else SETERRQ(PetscObjectComm((PetscObject)ts),PETSC_ERR_LIB,"CVodeSetMinStep() failed"); 3279f94935aSHong Zhang } 328f1cd61daSJed Brown } 329f1cd61daSJed Brown if (cvode->maxdt > 0) { 330f1cd61daSJed Brown flag = CVodeSetMaxStep(mem,(realtype)cvode->maxdt); 331ce94432eSBarry Smith if (flag) SETERRQ(PetscObjectComm((PetscObject)ts),PETSC_ERR_LIB,"CVodeSetMaxStep() failed"); 332f1cd61daSJed Brown } 333f1cd61daSJed Brown 33416016685SHong Zhang /* Call CVodeInit to initialize the integrator memory and specify the 33516016685SHong Zhang * user's right hand side function in u'=f(t,u), the inital time T0, and 33616016685SHong Zhang * the initial dependent variable vector cvode->y */ 33716016685SHong Zhang flag = CVodeInit(mem,TSFunction_Sundials,ts->ptime,cvode->y); 338bbd56ea5SKarl Rupp if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeInit() fails, flag %d",flag); 33916016685SHong Zhang 3409f94935aSHong Zhang /* specifies scalar relative and absolute tolerances */ 34116016685SHong Zhang flag = CVodeSStolerances(mem,cvode->reltol,cvode->abstol); 342bbd56ea5SKarl Rupp if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeSStolerances() fails, flag %d",flag); 34316016685SHong Zhang 3449f94935aSHong Zhang /* Specify max num of steps to be taken by cvode in its attempt to reach the next output time */ 3459f94935aSHong Zhang flag = CVodeSetMaxNumSteps(mem,ts->max_steps); 346be5899b3SLisandro Dalcin if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeSetMaxNumSteps() fails, flag %d",flag); 34716016685SHong Zhang 34816016685SHong Zhang /* call CVSpgmr to use GMRES as the linear solver. */ 34916016685SHong Zhang /* setup the ode integrator with the given preconditioner */ 350dcbc6d53SSean Farley ierr = TSSundialsGetPC(ts,&pc);CHKERRQ(ierr); 351dcbc6d53SSean Farley ierr = PCGetType(pc,&pctype);CHKERRQ(ierr); 352251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)pc,PCNONE,&pcnone);CHKERRQ(ierr); 35316016685SHong Zhang if (pcnone) { 35416016685SHong Zhang flag = CVSpgmr(mem,PREC_NONE,0); 355e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmr() fails, flag %d",flag); 35616016685SHong Zhang } else { 357f61b2b6aSHong Zhang flag = CVSpgmr(mem,PREC_LEFT,cvode->maxl); 358e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmr() fails, flag %d",flag); 35916016685SHong Zhang 36016016685SHong Zhang /* Set preconditioner and solve routines Precond and PSolve, 36116016685SHong Zhang and the pointer to the user-defined block data */ 36216016685SHong Zhang flag = CVSpilsSetPreconditioner(mem,TSPrecond_Sundials,TSPSolve_Sundials); 363e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpilsSetPreconditioner() fails, flag %d", flag); 36416016685SHong Zhang } 36516016685SHong Zhang 36616016685SHong Zhang flag = CVSpilsSetGSType(mem, MODIFIED_GS); 367e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmrSetGSType() fails, flag %d",flag); 3687cb94ee6SHong Zhang PetscFunctionReturn(0); 3697cb94ee6SHong Zhang } 3707cb94ee6SHong Zhang 3716fadb2cdSHong Zhang /* type of CVODE linear multistep method */ 3726a6fc655SJed Brown const char *const TSSundialsLmmTypes[] = {"","ADAMS","BDF","TSSundialsLmmType","SUNDIALS_",0}; 3736fadb2cdSHong Zhang /* type of G-S orthogonalization used by CVODE linear solver */ 3746a6fc655SJed Brown const char *const TSSundialsGramSchmidtTypes[] = {"","MODIFIED","CLASSICAL","TSSundialsGramSchmidtType","SUNDIALS_",0}; 375a04cf4d8SBarry Smith 3764416b707SBarry Smith PetscErrorCode TSSetFromOptions_Sundials(PetscOptionItems *PetscOptionsObject,TS ts) 3777cb94ee6SHong Zhang { 3787cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 3797cb94ee6SHong Zhang PetscErrorCode ierr; 3807cb94ee6SHong Zhang int indx; 381ace3abfcSBarry Smith PetscBool flag; 3827bda3a07SJed Brown PC pc; 3837cb94ee6SHong Zhang 3847cb94ee6SHong Zhang PetscFunctionBegin; 385e55864a3SBarry Smith ierr = PetscOptionsHead(PetscOptionsObject,"SUNDIALS ODE solver options");CHKERRQ(ierr); 3866fadb2cdSHong Zhang ierr = PetscOptionsEList("-ts_sundials_type","Scheme","TSSundialsSetType",TSSundialsLmmTypes,3,TSSundialsLmmTypes[cvode->cvode_type],&indx,&flag);CHKERRQ(ierr); 3877cb94ee6SHong Zhang if (flag) { 3886fadb2cdSHong Zhang ierr = TSSundialsSetType(ts,(TSSundialsLmmType)indx);CHKERRQ(ierr); 3897cb94ee6SHong Zhang } 3906fadb2cdSHong Zhang ierr = PetscOptionsEList("-ts_sundials_gramschmidt_type","Type of orthogonalization","TSSundialsSetGramSchmidtType",TSSundialsGramSchmidtTypes,3,TSSundialsGramSchmidtTypes[cvode->gtype],&indx,&flag);CHKERRQ(ierr); 3917cb94ee6SHong Zhang if (flag) { 3927cb94ee6SHong Zhang ierr = TSSundialsSetGramSchmidtType(ts,(TSSundialsGramSchmidtType)indx);CHKERRQ(ierr); 3937cb94ee6SHong Zhang } 3940298fd71SBarry Smith ierr = PetscOptionsReal("-ts_sundials_atol","Absolute tolerance for convergence","TSSundialsSetTolerance",cvode->abstol,&cvode->abstol,NULL);CHKERRQ(ierr); 3950298fd71SBarry Smith ierr = PetscOptionsReal("-ts_sundials_rtol","Relative tolerance for convergence","TSSundialsSetTolerance",cvode->reltol,&cvode->reltol,NULL);CHKERRQ(ierr); 3960298fd71SBarry Smith ierr = PetscOptionsReal("-ts_sundials_mindt","Minimum step size","TSSundialsSetMinTimeStep",cvode->mindt,&cvode->mindt,NULL);CHKERRQ(ierr); 3970298fd71SBarry Smith ierr = PetscOptionsReal("-ts_sundials_maxdt","Maximum step size","TSSundialsSetMaxTimeStep",cvode->maxdt,&cvode->maxdt,NULL);CHKERRQ(ierr); 39894ae4db5SBarry Smith ierr = PetscOptionsReal("-ts_sundials_linear_tolerance","Convergence tolerance for linear solve","TSSundialsSetLinearTolerance",cvode->linear_tol,&cvode->linear_tol,NULL);CHKERRQ(ierr); 39994ae4db5SBarry Smith ierr = PetscOptionsInt("-ts_sundials_maxl","Max dimension of the Krylov subspace","TSSundialsSetMaxl",cvode->maxl,&cvode->maxl,NULL);CHKERRQ(ierr); 400be5899b3SLisandro Dalcin ierr = PetscOptionsBool("-ts_sundials_monitor_steps","Monitor SUNDIALS internal steps","TSSundialsMonitorInternalSteps",cvode->monitorstep,&cvode->monitorstep,NULL);CHKERRQ(ierr); 4017cb94ee6SHong Zhang ierr = PetscOptionsTail();CHKERRQ(ierr); 4027bda3a07SJed Brown ierr = TSSundialsGetPC(ts,&pc);CHKERRQ(ierr); 4037bda3a07SJed Brown ierr = PCSetFromOptions(pc);CHKERRQ(ierr); 4047cb94ee6SHong Zhang PetscFunctionReturn(0); 4057cb94ee6SHong Zhang } 4067cb94ee6SHong Zhang 4077cb94ee6SHong Zhang PetscErrorCode TSView_Sundials(TS ts,PetscViewer viewer) 4087cb94ee6SHong Zhang { 4097cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 4107cb94ee6SHong Zhang PetscErrorCode ierr; 4117cb94ee6SHong Zhang char *type; 4127cb94ee6SHong Zhang char atype[] = "Adams"; 4137cb94ee6SHong Zhang char btype[] = "BDF: backward differentiation formula"; 414ace3abfcSBarry Smith PetscBool iascii,isstring; 4152c823083SHong Zhang long int nsteps,its,nfevals,nlinsetups,nfails,itmp; 4162c823083SHong Zhang PetscInt qlast,qcur; 4175d47aee6SHong Zhang PetscReal hinused,hlast,hcur,tcur,tolsfac; 41842528757SHong Zhang PC pc; 4197cb94ee6SHong Zhang 4207cb94ee6SHong Zhang PetscFunctionBegin; 421bbd56ea5SKarl Rupp if (cvode->cvode_type == SUNDIALS_ADAMS) type = atype; 422bbd56ea5SKarl Rupp else type = btype; 4237cb94ee6SHong Zhang 424251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 425251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSTRING,&isstring);CHKERRQ(ierr); 4267cb94ee6SHong Zhang if (iascii) { 4277cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials integrater does not use SNES!\n");CHKERRQ(ierr); 4287cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials integrater type %s\n",type);CHKERRQ(ierr); 4297cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials abs tol %g rel tol %g\n",cvode->abstol,cvode->reltol);CHKERRQ(ierr); 4307cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials linear solver tolerance factor %g\n",cvode->linear_tol);CHKERRQ(ierr); 431f61b2b6aSHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials max dimension of Krylov subspace %D\n",cvode->maxl);CHKERRQ(ierr); 4327cb94ee6SHong Zhang if (cvode->gtype == SUNDIALS_MODIFIED_GS) { 4337cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials using modified Gram-Schmidt for orthogonalization in GMRES\n");CHKERRQ(ierr); 4347cb94ee6SHong Zhang } else { 4357cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials using unmodified (classical) Gram-Schmidt for orthogonalization in GMRES\n");CHKERRQ(ierr); 4367cb94ee6SHong Zhang } 437f1cd61daSJed Brown if (cvode->mindt > 0) {ierr = PetscViewerASCIIPrintf(viewer,"Sundials minimum time step %g\n",cvode->mindt);CHKERRQ(ierr);} 438f1cd61daSJed Brown if (cvode->maxdt > 0) {ierr = PetscViewerASCIIPrintf(viewer,"Sundials maximum time step %g\n",cvode->maxdt);CHKERRQ(ierr);} 4392c823083SHong Zhang 4405d47aee6SHong Zhang /* Outputs from CVODE, CVSPILS */ 4415d47aee6SHong Zhang ierr = CVodeGetTolScaleFactor(cvode->mem,&tolsfac);CHKERRQ(ierr); 4425d47aee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials suggested factor for tolerance scaling %g\n",tolsfac);CHKERRQ(ierr); 4432c823083SHong Zhang ierr = CVodeGetIntegratorStats(cvode->mem,&nsteps,&nfevals, 4442c823083SHong Zhang &nlinsetups,&nfails,&qlast,&qcur, 4452c823083SHong Zhang &hinused,&hlast,&hcur,&tcur);CHKERRQ(ierr); 4462c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials cumulative number of internal steps %D\n",nsteps);CHKERRQ(ierr); 4472c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of calls to rhs function %D\n",nfevals);CHKERRQ(ierr); 4482c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of calls to linear solver setup function %D\n",nlinsetups);CHKERRQ(ierr); 4492c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of error test failures %D\n",nfails);CHKERRQ(ierr); 4502c823083SHong Zhang 4512c823083SHong Zhang ierr = CVodeGetNonlinSolvStats(cvode->mem,&its,&nfails);CHKERRQ(ierr); 4522c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of nonlinear solver iterations %D\n",its);CHKERRQ(ierr); 4532c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of nonlinear convergence failure %D\n",nfails);CHKERRQ(ierr); 4542c823083SHong Zhang 4552c823083SHong Zhang ierr = CVSpilsGetNumLinIters(cvode->mem, &its);CHKERRQ(ierr); /* its = no. of calls to TSPrecond_Sundials() */ 4562c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of linear iterations %D\n",its);CHKERRQ(ierr); 4572c823083SHong Zhang ierr = CVSpilsGetNumConvFails(cvode->mem,&itmp);CHKERRQ(ierr); 4582c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of linear convergence failures %D\n",itmp);CHKERRQ(ierr); 45942528757SHong Zhang 46042528757SHong Zhang ierr = TSSundialsGetPC(ts,&pc);CHKERRQ(ierr); 46142528757SHong Zhang ierr = PCView(pc,viewer);CHKERRQ(ierr); 4622c823083SHong Zhang ierr = CVSpilsGetNumPrecEvals(cvode->mem,&itmp);CHKERRQ(ierr); 4632c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of preconditioner evaluations %D\n",itmp);CHKERRQ(ierr); 4642c823083SHong Zhang ierr = CVSpilsGetNumPrecSolves(cvode->mem,&itmp);CHKERRQ(ierr); 4652c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of preconditioner solves %D\n",itmp);CHKERRQ(ierr); 46642528757SHong Zhang 4672c823083SHong Zhang ierr = CVSpilsGetNumJtimesEvals(cvode->mem,&itmp);CHKERRQ(ierr); 4682c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of Jacobian-vector product evaluations %D\n",itmp);CHKERRQ(ierr); 4692c823083SHong Zhang ierr = CVSpilsGetNumRhsEvals(cvode->mem,&itmp);CHKERRQ(ierr); 4702c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of rhs calls for finite diff. Jacobian-vector evals %D\n",itmp);CHKERRQ(ierr); 4717cb94ee6SHong Zhang } else if (isstring) { 4727cb94ee6SHong Zhang ierr = PetscViewerStringSPrintf(viewer,"Sundials type %s",type);CHKERRQ(ierr); 4737cb94ee6SHong Zhang } 4747cb94ee6SHong Zhang PetscFunctionReturn(0); 4757cb94ee6SHong Zhang } 4767cb94ee6SHong Zhang 4777cb94ee6SHong Zhang 4787cb94ee6SHong Zhang /* --------------------------------------------------------------------------*/ 4797087cfbeSBarry Smith PetscErrorCode TSSundialsSetType_Sundials(TS ts,TSSundialsLmmType type) 4807cb94ee6SHong Zhang { 4817cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 4827cb94ee6SHong Zhang 4837cb94ee6SHong Zhang PetscFunctionBegin; 4847cb94ee6SHong Zhang cvode->cvode_type = type; 4857cb94ee6SHong Zhang PetscFunctionReturn(0); 4867cb94ee6SHong Zhang } 4877cb94ee6SHong Zhang 488f61b2b6aSHong Zhang PetscErrorCode TSSundialsSetMaxl_Sundials(TS ts,PetscInt maxl) 4897cb94ee6SHong Zhang { 4907cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 4917cb94ee6SHong Zhang 4927cb94ee6SHong Zhang PetscFunctionBegin; 493f61b2b6aSHong Zhang cvode->maxl = maxl; 4947cb94ee6SHong Zhang PetscFunctionReturn(0); 4957cb94ee6SHong Zhang } 4967cb94ee6SHong Zhang 4977087cfbeSBarry Smith PetscErrorCode TSSundialsSetLinearTolerance_Sundials(TS ts,double tol) 4987cb94ee6SHong Zhang { 4997cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5007cb94ee6SHong Zhang 5017cb94ee6SHong Zhang PetscFunctionBegin; 5027cb94ee6SHong Zhang cvode->linear_tol = tol; 5037cb94ee6SHong Zhang PetscFunctionReturn(0); 5047cb94ee6SHong Zhang } 5057cb94ee6SHong Zhang 5067087cfbeSBarry Smith PetscErrorCode TSSundialsSetGramSchmidtType_Sundials(TS ts,TSSundialsGramSchmidtType type) 5077cb94ee6SHong Zhang { 5087cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5097cb94ee6SHong Zhang 5107cb94ee6SHong Zhang PetscFunctionBegin; 5117cb94ee6SHong Zhang cvode->gtype = type; 5127cb94ee6SHong Zhang PetscFunctionReturn(0); 5137cb94ee6SHong Zhang } 5147cb94ee6SHong Zhang 5157087cfbeSBarry Smith PetscErrorCode TSSundialsSetTolerance_Sundials(TS ts,double aabs,double rel) 5167cb94ee6SHong Zhang { 5177cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5187cb94ee6SHong Zhang 5197cb94ee6SHong Zhang PetscFunctionBegin; 5207cb94ee6SHong Zhang if (aabs != PETSC_DECIDE) cvode->abstol = aabs; 5217cb94ee6SHong Zhang if (rel != PETSC_DECIDE) cvode->reltol = rel; 5227cb94ee6SHong Zhang PetscFunctionReturn(0); 5237cb94ee6SHong Zhang } 5247cb94ee6SHong Zhang 5257087cfbeSBarry Smith PetscErrorCode TSSundialsSetMinTimeStep_Sundials(TS ts,PetscReal mindt) 526f1cd61daSJed Brown { 527f1cd61daSJed Brown TS_Sundials *cvode = (TS_Sundials*)ts->data; 528f1cd61daSJed Brown 529f1cd61daSJed Brown PetscFunctionBegin; 530f1cd61daSJed Brown cvode->mindt = mindt; 531f1cd61daSJed Brown PetscFunctionReturn(0); 532f1cd61daSJed Brown } 533f1cd61daSJed Brown 5347087cfbeSBarry Smith PetscErrorCode TSSundialsSetMaxTimeStep_Sundials(TS ts,PetscReal maxdt) 535f1cd61daSJed Brown { 536f1cd61daSJed Brown TS_Sundials *cvode = (TS_Sundials*)ts->data; 537f1cd61daSJed Brown 538f1cd61daSJed Brown PetscFunctionBegin; 539f1cd61daSJed Brown cvode->maxdt = maxdt; 540f1cd61daSJed Brown PetscFunctionReturn(0); 541f1cd61daSJed Brown } 5427087cfbeSBarry Smith PetscErrorCode TSSundialsGetPC_Sundials(TS ts,PC *pc) 5437cb94ee6SHong Zhang { 544dcbc6d53SSean Farley SNES snes; 545dcbc6d53SSean Farley KSP ksp; 546dcbc6d53SSean Farley PetscErrorCode ierr; 5477cb94ee6SHong Zhang 5487cb94ee6SHong Zhang PetscFunctionBegin; 549dcbc6d53SSean Farley ierr = TSGetSNES(ts,&snes);CHKERRQ(ierr); 550dcbc6d53SSean Farley ierr = SNESGetKSP(snes,&ksp);CHKERRQ(ierr); 551dcbc6d53SSean Farley ierr = KSPGetPC(ksp,pc);CHKERRQ(ierr); 5527cb94ee6SHong Zhang PetscFunctionReturn(0); 5537cb94ee6SHong Zhang } 5547cb94ee6SHong Zhang 5557087cfbeSBarry Smith PetscErrorCode TSSundialsGetIterations_Sundials(TS ts,int *nonlin,int *lin) 5567cb94ee6SHong Zhang { 5577cb94ee6SHong Zhang PetscFunctionBegin; 5585ef26d82SJed Brown if (nonlin) *nonlin = ts->snes_its; 5595ef26d82SJed Brown if (lin) *lin = ts->ksp_its; 5607cb94ee6SHong Zhang PetscFunctionReturn(0); 5617cb94ee6SHong Zhang } 5627cb94ee6SHong Zhang 5637087cfbeSBarry Smith PetscErrorCode TSSundialsMonitorInternalSteps_Sundials(TS ts,PetscBool s) 5642bfc04deSHong Zhang { 5652bfc04deSHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5662bfc04deSHong Zhang 5672bfc04deSHong Zhang PetscFunctionBegin; 5682bfc04deSHong Zhang cvode->monitorstep = s; 5692bfc04deSHong Zhang PetscFunctionReturn(0); 5702bfc04deSHong Zhang } 5717cb94ee6SHong Zhang /* -------------------------------------------------------------------------------------------*/ 5727cb94ee6SHong Zhang 5737cb94ee6SHong Zhang /*@C 5747cb94ee6SHong Zhang TSSundialsGetIterations - Gets the number of nonlinear and linear iterations used so far by Sundials. 5757cb94ee6SHong Zhang 5767cb94ee6SHong Zhang Not Collective 5777cb94ee6SHong Zhang 5787cb94ee6SHong Zhang Input parameters: 5797cb94ee6SHong Zhang . ts - the time-step context 5807cb94ee6SHong Zhang 5817cb94ee6SHong Zhang Output Parameters: 5827cb94ee6SHong Zhang + nonlin - number of nonlinear iterations 5837cb94ee6SHong Zhang - lin - number of linear iterations 5847cb94ee6SHong Zhang 5857cb94ee6SHong Zhang Level: advanced 5867cb94ee6SHong Zhang 5877cb94ee6SHong Zhang Notes: 5887cb94ee6SHong Zhang These return the number since the creation of the TS object 5897cb94ee6SHong Zhang 5907cb94ee6SHong Zhang .keywords: non-linear iterations, linear iterations 5917cb94ee6SHong Zhang 592f61b2b6aSHong Zhang .seealso: TSSundialsSetType(), TSSundialsSetMaxl(), 5937cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 594f61b2b6aSHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), 595a43b19c4SJed Brown TSSundialsSetLinearTolerance(), TSSundialsGetPC(), TSSetExactFinalTime() 5967cb94ee6SHong Zhang 5977cb94ee6SHong Zhang @*/ 5987087cfbeSBarry Smith PetscErrorCode TSSundialsGetIterations(TS ts,int *nonlin,int *lin) 5997cb94ee6SHong Zhang { 6004ac538c5SBarry Smith PetscErrorCode ierr; 6017cb94ee6SHong Zhang 6027cb94ee6SHong Zhang PetscFunctionBegin; 6034ac538c5SBarry Smith ierr = PetscUseMethod(ts,"TSSundialsGetIterations_C",(TS,int*,int*),(ts,nonlin,lin));CHKERRQ(ierr); 6047cb94ee6SHong Zhang PetscFunctionReturn(0); 6057cb94ee6SHong Zhang } 6067cb94ee6SHong Zhang 6077cb94ee6SHong Zhang /*@ 6087cb94ee6SHong Zhang TSSundialsSetType - Sets the method that Sundials will use for integration. 6097cb94ee6SHong Zhang 6103f9fe445SBarry Smith Logically Collective on TS 6117cb94ee6SHong Zhang 6127cb94ee6SHong Zhang Input parameters: 6137cb94ee6SHong Zhang + ts - the time-step context 6147cb94ee6SHong Zhang - type - one of SUNDIALS_ADAMS or SUNDIALS_BDF 6157cb94ee6SHong Zhang 6167cb94ee6SHong Zhang Level: intermediate 6177cb94ee6SHong Zhang 6187cb94ee6SHong Zhang .keywords: Adams, backward differentiation formula 6197cb94ee6SHong Zhang 620f61b2b6aSHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetMaxl(), 6217cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 622f61b2b6aSHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), 6237cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 624a43b19c4SJed Brown TSSetExactFinalTime() 6257cb94ee6SHong Zhang @*/ 6267087cfbeSBarry Smith PetscErrorCode TSSundialsSetType(TS ts,TSSundialsLmmType type) 6277cb94ee6SHong Zhang { 6284ac538c5SBarry Smith PetscErrorCode ierr; 6297cb94ee6SHong Zhang 6307cb94ee6SHong Zhang PetscFunctionBegin; 6314ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetType_C",(TS,TSSundialsLmmType),(ts,type));CHKERRQ(ierr); 6327cb94ee6SHong Zhang PetscFunctionReturn(0); 6337cb94ee6SHong Zhang } 6347cb94ee6SHong Zhang 6357cb94ee6SHong Zhang /*@ 636f61b2b6aSHong Zhang TSSundialsSetMaxl - Sets the dimension of the Krylov space used by 6377cb94ee6SHong Zhang GMRES in the linear solver in SUNDIALS. SUNDIALS DOES NOT use restarted GMRES so 638f61b2b6aSHong Zhang this is the maximum number of GMRES steps that will be used. 6397cb94ee6SHong Zhang 6403f9fe445SBarry Smith Logically Collective on TS 6417cb94ee6SHong Zhang 6427cb94ee6SHong Zhang Input parameters: 6437cb94ee6SHong Zhang + ts - the time-step context 644f61b2b6aSHong Zhang - maxl - number of direction vectors (the dimension of Krylov subspace). 6457cb94ee6SHong Zhang 6467cb94ee6SHong Zhang Level: advanced 6477cb94ee6SHong Zhang 648f61b2b6aSHong Zhang .keywords: GMRES 6497cb94ee6SHong Zhang 6507cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), 6517cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 652f61b2b6aSHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), 6537cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 654a43b19c4SJed Brown TSSetExactFinalTime() 6557cb94ee6SHong Zhang 6567cb94ee6SHong Zhang @*/ 657f61b2b6aSHong Zhang PetscErrorCode TSSundialsSetMaxl(TS ts,PetscInt maxl) 6587cb94ee6SHong Zhang { 6594ac538c5SBarry Smith PetscErrorCode ierr; 6607cb94ee6SHong Zhang 6617cb94ee6SHong Zhang PetscFunctionBegin; 662f61b2b6aSHong Zhang PetscValidLogicalCollectiveInt(ts,maxl,2); 663f61b2b6aSHong Zhang ierr = PetscTryMethod(ts,"TSSundialsSetMaxl_C",(TS,PetscInt),(ts,maxl));CHKERRQ(ierr); 6647cb94ee6SHong Zhang PetscFunctionReturn(0); 6657cb94ee6SHong Zhang } 6667cb94ee6SHong Zhang 6677cb94ee6SHong Zhang /*@ 6687cb94ee6SHong Zhang TSSundialsSetLinearTolerance - Sets the tolerance used to solve the linear 6697cb94ee6SHong Zhang system by SUNDIALS. 6707cb94ee6SHong Zhang 6713f9fe445SBarry Smith Logically Collective on TS 6727cb94ee6SHong Zhang 6737cb94ee6SHong Zhang Input parameters: 6747cb94ee6SHong Zhang + ts - the time-step context 6757cb94ee6SHong Zhang - tol - the factor by which the tolerance on the nonlinear solver is 6767cb94ee6SHong Zhang multiplied to get the tolerance on the linear solver, .05 by default. 6777cb94ee6SHong Zhang 6787cb94ee6SHong Zhang Level: advanced 6797cb94ee6SHong Zhang 6807cb94ee6SHong Zhang .keywords: GMRES, linear convergence tolerance, SUNDIALS 6817cb94ee6SHong Zhang 682f61b2b6aSHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetMaxl(), 6837cb94ee6SHong Zhang TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 684f61b2b6aSHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), 6857cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 686a43b19c4SJed Brown TSSetExactFinalTime() 6877cb94ee6SHong Zhang 6887cb94ee6SHong Zhang @*/ 6897087cfbeSBarry Smith PetscErrorCode TSSundialsSetLinearTolerance(TS ts,double tol) 6907cb94ee6SHong Zhang { 6914ac538c5SBarry Smith PetscErrorCode ierr; 6927cb94ee6SHong Zhang 6937cb94ee6SHong Zhang PetscFunctionBegin; 694c5eb9154SBarry Smith PetscValidLogicalCollectiveReal(ts,tol,2); 6954ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetLinearTolerance_C",(TS,double),(ts,tol));CHKERRQ(ierr); 6967cb94ee6SHong Zhang PetscFunctionReturn(0); 6977cb94ee6SHong Zhang } 6987cb94ee6SHong Zhang 6997cb94ee6SHong Zhang /*@ 7007cb94ee6SHong Zhang TSSundialsSetGramSchmidtType - Sets type of orthogonalization used 7017cb94ee6SHong Zhang in GMRES method by SUNDIALS linear solver. 7027cb94ee6SHong Zhang 7033f9fe445SBarry Smith Logically Collective on TS 7047cb94ee6SHong Zhang 7057cb94ee6SHong Zhang Input parameters: 7067cb94ee6SHong Zhang + ts - the time-step context 7077cb94ee6SHong Zhang - type - either SUNDIALS_MODIFIED_GS or SUNDIALS_CLASSICAL_GS 7087cb94ee6SHong Zhang 7097cb94ee6SHong Zhang Level: advanced 7107cb94ee6SHong Zhang 7117cb94ee6SHong Zhang .keywords: Sundials, orthogonalization 7127cb94ee6SHong Zhang 713f61b2b6aSHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetMaxl(), 7147cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), 715f61b2b6aSHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), 7167cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 717a43b19c4SJed Brown TSSetExactFinalTime() 7187cb94ee6SHong Zhang 7197cb94ee6SHong Zhang @*/ 7207087cfbeSBarry Smith PetscErrorCode TSSundialsSetGramSchmidtType(TS ts,TSSundialsGramSchmidtType type) 7217cb94ee6SHong Zhang { 7224ac538c5SBarry Smith PetscErrorCode ierr; 7237cb94ee6SHong Zhang 7247cb94ee6SHong Zhang PetscFunctionBegin; 7254ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetGramSchmidtType_C",(TS,TSSundialsGramSchmidtType),(ts,type));CHKERRQ(ierr); 7267cb94ee6SHong Zhang PetscFunctionReturn(0); 7277cb94ee6SHong Zhang } 7287cb94ee6SHong Zhang 7297cb94ee6SHong Zhang /*@ 7307cb94ee6SHong Zhang TSSundialsSetTolerance - Sets the absolute and relative tolerance used by 7317cb94ee6SHong Zhang Sundials for error control. 7327cb94ee6SHong Zhang 7333f9fe445SBarry Smith Logically Collective on TS 7347cb94ee6SHong Zhang 7357cb94ee6SHong Zhang Input parameters: 7367cb94ee6SHong Zhang + ts - the time-step context 7377cb94ee6SHong Zhang . aabs - the absolute tolerance 7387cb94ee6SHong Zhang - rel - the relative tolerance 7397cb94ee6SHong Zhang 7407cb94ee6SHong Zhang See the Cvode/Sundials users manual for exact details on these parameters. Essentially 7417cb94ee6SHong Zhang these regulate the size of the error for a SINGLE timestep. 7427cb94ee6SHong Zhang 7437cb94ee6SHong Zhang Level: intermediate 7447cb94ee6SHong Zhang 7457cb94ee6SHong Zhang .keywords: Sundials, tolerance 7467cb94ee6SHong Zhang 747f61b2b6aSHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESMaxl(), 7487cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), 749f61b2b6aSHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), 7507cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 751a43b19c4SJed Brown TSSetExactFinalTime() 7527cb94ee6SHong Zhang 7537cb94ee6SHong Zhang @*/ 7547087cfbeSBarry Smith PetscErrorCode TSSundialsSetTolerance(TS ts,double aabs,double rel) 7557cb94ee6SHong Zhang { 7564ac538c5SBarry Smith PetscErrorCode ierr; 7577cb94ee6SHong Zhang 7587cb94ee6SHong Zhang PetscFunctionBegin; 7594ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetTolerance_C",(TS,double,double),(ts,aabs,rel));CHKERRQ(ierr); 7607cb94ee6SHong Zhang PetscFunctionReturn(0); 7617cb94ee6SHong Zhang } 7627cb94ee6SHong Zhang 7637cb94ee6SHong Zhang /*@ 7647cb94ee6SHong Zhang TSSundialsGetPC - Extract the PC context from a time-step context for Sundials. 7657cb94ee6SHong Zhang 7667cb94ee6SHong Zhang Input Parameter: 7677cb94ee6SHong Zhang . ts - the time-step context 7687cb94ee6SHong Zhang 7697cb94ee6SHong Zhang Output Parameter: 7707cb94ee6SHong Zhang . pc - the preconditioner context 7717cb94ee6SHong Zhang 7727cb94ee6SHong Zhang Level: advanced 7737cb94ee6SHong Zhang 774f61b2b6aSHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetMaxl(), 7757cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 776f61b2b6aSHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), 7777cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance() 7787cb94ee6SHong Zhang @*/ 7797087cfbeSBarry Smith PetscErrorCode TSSundialsGetPC(TS ts,PC *pc) 7807cb94ee6SHong Zhang { 7814ac538c5SBarry Smith PetscErrorCode ierr; 7827cb94ee6SHong Zhang 7837cb94ee6SHong Zhang PetscFunctionBegin; 7844ac538c5SBarry Smith ierr = PetscUseMethod(ts,"TSSundialsGetPC_C",(TS,PC*),(ts,pc));CHKERRQ(ierr); 7857cb94ee6SHong Zhang PetscFunctionReturn(0); 7867cb94ee6SHong Zhang } 7877cb94ee6SHong Zhang 788f1cd61daSJed Brown /*@ 789f1cd61daSJed Brown TSSundialsSetMinTimeStep - Smallest time step to be chosen by the adaptive controller. 790f1cd61daSJed Brown 791f1cd61daSJed Brown Input Parameter: 792f1cd61daSJed Brown + ts - the time-step context 793f1cd61daSJed Brown - mindt - lowest time step if positive, negative to deactivate 794f1cd61daSJed Brown 795fc6b9e64SJed Brown Note: 796fc6b9e64SJed Brown Sundials will error if it is not possible to keep the estimated truncation error below 797fc6b9e64SJed Brown the tolerance set with TSSundialsSetTolerance() without going below this step size. 798fc6b9e64SJed Brown 799f1cd61daSJed Brown Level: beginner 800f1cd61daSJed Brown 801f1cd61daSJed Brown .seealso: TSSundialsSetType(), TSSundialsSetTolerance(), 802f1cd61daSJed Brown @*/ 8037087cfbeSBarry Smith PetscErrorCode TSSundialsSetMinTimeStep(TS ts,PetscReal mindt) 804f1cd61daSJed Brown { 8054ac538c5SBarry Smith PetscErrorCode ierr; 806f1cd61daSJed Brown 807f1cd61daSJed Brown PetscFunctionBegin; 8084ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetMinTimeStep_C",(TS,PetscReal),(ts,mindt));CHKERRQ(ierr); 809f1cd61daSJed Brown PetscFunctionReturn(0); 810f1cd61daSJed Brown } 811f1cd61daSJed Brown 812f1cd61daSJed Brown /*@ 813f1cd61daSJed Brown TSSundialsSetMaxTimeStep - Largest time step to be chosen by the adaptive controller. 814f1cd61daSJed Brown 815f1cd61daSJed Brown Input Parameter: 816f1cd61daSJed Brown + ts - the time-step context 817f1cd61daSJed Brown - maxdt - lowest time step if positive, negative to deactivate 818f1cd61daSJed Brown 819f1cd61daSJed Brown Level: beginner 820f1cd61daSJed Brown 821f1cd61daSJed Brown .seealso: TSSundialsSetType(), TSSundialsSetTolerance(), 822f1cd61daSJed Brown @*/ 8237087cfbeSBarry Smith PetscErrorCode TSSundialsSetMaxTimeStep(TS ts,PetscReal maxdt) 824f1cd61daSJed Brown { 8254ac538c5SBarry Smith PetscErrorCode ierr; 826f1cd61daSJed Brown 827f1cd61daSJed Brown PetscFunctionBegin; 8284ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetMaxTimeStep_C",(TS,PetscReal),(ts,maxdt));CHKERRQ(ierr); 829f1cd61daSJed Brown PetscFunctionReturn(0); 830f1cd61daSJed Brown } 831f1cd61daSJed Brown 8322bfc04deSHong Zhang /*@ 8332bfc04deSHong Zhang TSSundialsMonitorInternalSteps - Monitor Sundials internal steps (Defaults to false). 8342bfc04deSHong Zhang 8352bfc04deSHong Zhang Input Parameter: 8362bfc04deSHong Zhang + ts - the time-step context 8372bfc04deSHong Zhang - ft - PETSC_TRUE if monitor, else PETSC_FALSE 8382bfc04deSHong Zhang 8392bfc04deSHong Zhang Level: beginner 8402bfc04deSHong Zhang 841f61b2b6aSHong Zhang .seealso:TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetMaxl(), 8422bfc04deSHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 843f61b2b6aSHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), 8442bfc04deSHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC() 8452bfc04deSHong Zhang @*/ 8467087cfbeSBarry Smith PetscErrorCode TSSundialsMonitorInternalSteps(TS ts,PetscBool ft) 8472bfc04deSHong Zhang { 8484ac538c5SBarry Smith PetscErrorCode ierr; 8492bfc04deSHong Zhang 8502bfc04deSHong Zhang PetscFunctionBegin; 8514ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsMonitorInternalSteps_C",(TS,PetscBool),(ts,ft));CHKERRQ(ierr); 8522bfc04deSHong Zhang PetscFunctionReturn(0); 8532bfc04deSHong Zhang } 8547cb94ee6SHong Zhang /* -------------------------------------------------------------------------------------------*/ 8557cb94ee6SHong Zhang /*MC 85696f5712cSJed Brown TSSUNDIALS - ODE solver using the LLNL CVODE/SUNDIALS package (now called SUNDIALS) 8577cb94ee6SHong Zhang 8587cb94ee6SHong Zhang Options Database: 859897c9f78SHong Zhang + -ts_sundials_type <bdf,adams> - 8607cb94ee6SHong Zhang . -ts_sundials_gramschmidt_type <modified, classical> - type of orthogonalization inside GMRES 8617cb94ee6SHong Zhang . -ts_sundials_atol <tol> - Absolute tolerance for convergence 8627cb94ee6SHong Zhang . -ts_sundials_rtol <tol> - Relative tolerance for convergence 863897c9f78SHong Zhang . -ts_sundials_linear_tolerance <tol> - 864f61b2b6aSHong Zhang . -ts_sundials_maxl <maxl> - Max dimension of the Krylov subspace 865897c9f78SHong Zhang - -ts_sundials_monitor_steps - Monitor SUNDIALS internal steps 86616016685SHong Zhang 8677cb94ee6SHong Zhang 868897c9f78SHong Zhang Notes: This uses its own nonlinear solver and Krylov method so PETSc SNES and KSP options do not apply, 869897c9f78SHong Zhang only PETSc PC options. 8707cb94ee6SHong Zhang 8717cb94ee6SHong Zhang Level: beginner 8727cb94ee6SHong Zhang 873f61b2b6aSHong Zhang .seealso: TSCreate(), TS, TSSetType(), TSSundialsSetType(), TSSundialsSetMaxl(), TSSundialsSetLinearTolerance(), 874a43b19c4SJed Brown TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), TSSundialsGetPC(), TSSundialsGetIterations(), TSSetExactFinalTime() 8757cb94ee6SHong Zhang 8767cb94ee6SHong Zhang M*/ 8778cc058d9SJed Brown PETSC_EXTERN PetscErrorCode TSCreate_Sundials(TS ts) 8787cb94ee6SHong Zhang { 8797cb94ee6SHong Zhang TS_Sundials *cvode; 8807cb94ee6SHong Zhang PetscErrorCode ierr; 88142528757SHong Zhang PC pc; 8827cb94ee6SHong Zhang 8837cb94ee6SHong Zhang PetscFunctionBegin; 884277b19d0SLisandro Dalcin ts->ops->reset = TSReset_Sundials; 88528adb3f7SHong Zhang ts->ops->destroy = TSDestroy_Sundials; 88628adb3f7SHong Zhang ts->ops->view = TSView_Sundials; 887214bc6a2SJed Brown ts->ops->setup = TSSetUp_Sundials; 888b4eba00bSSean Farley ts->ops->step = TSStep_Sundials; 889b4eba00bSSean Farley ts->ops->interpolate = TSInterpolate_Sundials; 890214bc6a2SJed Brown ts->ops->setfromoptions = TSSetFromOptions_Sundials; 8912ffb9264SLisandro Dalcin ts->default_adapt_type = TSADAPTNONE; 8927cb94ee6SHong Zhang 893b00a9115SJed Brown ierr = PetscNewLog(ts,&cvode);CHKERRQ(ierr); 894bbd56ea5SKarl Rupp 895*efd4aadfSBarry Smith ts->usessnes = PETSC_TRUE; 896*efd4aadfSBarry Smith 8977cb94ee6SHong Zhang ts->data = (void*)cvode; 8986fadb2cdSHong Zhang cvode->cvode_type = SUNDIALS_BDF; 8996fadb2cdSHong Zhang cvode->gtype = SUNDIALS_CLASSICAL_GS; 900f61b2b6aSHong Zhang cvode->maxl = 5; 9017cb94ee6SHong Zhang cvode->linear_tol = .05; 902b4eba00bSSean Farley cvode->monitorstep = PETSC_TRUE; 9037cb94ee6SHong Zhang 904ce94432eSBarry Smith ierr = MPI_Comm_dup(PetscObjectComm((PetscObject)ts),&(cvode->comm_sundials));CHKERRQ(ierr); 905f1cd61daSJed Brown 906f1cd61daSJed Brown cvode->mindt = -1.; 907f1cd61daSJed Brown cvode->maxdt = -1.; 908f1cd61daSJed Brown 9097cb94ee6SHong Zhang /* set tolerance for Sundials */ 9107cb94ee6SHong Zhang cvode->reltol = 1e-6; 9112c823083SHong Zhang cvode->abstol = 1e-6; 9127cb94ee6SHong Zhang 91342528757SHong Zhang /* set PCNONE as default pctype */ 91442528757SHong Zhang ierr = TSSundialsGetPC_Sundials(ts,&pc);CHKERRQ(ierr); 91542528757SHong Zhang ierr = PCSetType(pc,PCNONE);CHKERRQ(ierr); 91642528757SHong Zhang 917bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetType_C",TSSundialsSetType_Sundials);CHKERRQ(ierr); 918bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetMaxl_C",TSSundialsSetMaxl_Sundials);CHKERRQ(ierr); 919bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetLinearTolerance_C",TSSundialsSetLinearTolerance_Sundials);CHKERRQ(ierr); 920bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetGramSchmidtType_C",TSSundialsSetGramSchmidtType_Sundials);CHKERRQ(ierr); 921bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetTolerance_C",TSSundialsSetTolerance_Sundials);CHKERRQ(ierr); 922bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetMinTimeStep_C",TSSundialsSetMinTimeStep_Sundials);CHKERRQ(ierr); 923bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsSetMaxTimeStep_C",TSSundialsSetMaxTimeStep_Sundials);CHKERRQ(ierr); 924bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsGetPC_C",TSSundialsGetPC_Sundials);CHKERRQ(ierr); 925bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsGetIterations_C",TSSundialsGetIterations_Sundials);CHKERRQ(ierr); 926bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)ts,"TSSundialsMonitorInternalSteps_C",TSSundialsMonitorInternalSteps_Sundials);CHKERRQ(ierr); 9277cb94ee6SHong Zhang PetscFunctionReturn(0); 9287cb94ee6SHong Zhang } 929