xref: /petsc/src/ts/impls/multirate/mprk.c (revision 41eb3033ba0f375a8654578dc4e0476be205bb86)
14b84eec9SHong Zhang /*
2f944a40eSHong Zhang   Code for time stepping with the Multirate Partitioned Runge-Kutta method
34b84eec9SHong Zhang 
44b84eec9SHong Zhang   Notes:
54b84eec9SHong Zhang   1) The general system is written as
6f944a40eSHong Zhang      Udot = F(t,U)
7f944a40eSHong Zhang      if one does not split the RHS function, but gives the indexes for both slow and fast components;
84b84eec9SHong Zhang   2) The general system is written as
94b84eec9SHong Zhang      Usdot = Fs(t,Us,Uf)
10f944a40eSHong Zhang      Ufdot = Ff(t,Us,Uf)
11f944a40eSHong Zhang      for component-wise partitioned system,
12f944a40eSHong Zhang      users should split the RHS function themselves and also provide the indexes for both slow and fast components.
1319c2959aSHong Zhang   3) To correct The confusing terminology in the paper, we use 'slow method', 'slow buffer method' and 'fast method' to denote the methods applied to 'slow region', 'slow buffer region' and 'fast region' respectively. The 'slow method' in the original paper actually means the 'slow buffer method'.
1419c2959aSHong Zhang   4) Why does the buffer region have to be inside the slow region? The buffer region is treated with a slow method essentially. Applying the slow method to a region with a fast characteristic time scale is apparently not a good choice.
1519c2959aSHong Zhang 
1619c2959aSHong Zhang   Reference:
1719c2959aSHong Zhang   Emil M. Constantinescu, Adrian Sandu, Multirate Timestepping Methods for Hyperbolic Conservation Laws, Journal of Scientific Computing 2007
184b84eec9SHong Zhang */
194b84eec9SHong Zhang 
204b84eec9SHong Zhang #include <petsc/private/tsimpl.h>                /*I   "petscts.h"   I*/
214b84eec9SHong Zhang #include <petscdm.h>
224b84eec9SHong Zhang 
2319c2959aSHong Zhang static TSMPRKType TSMPRKDefault = TSMPRK2A22;
244b84eec9SHong Zhang static PetscBool TSMPRKRegisterAllCalled;
254b84eec9SHong Zhang static PetscBool TSMPRKPackageInitialized;
264b84eec9SHong Zhang 
274b84eec9SHong Zhang typedef struct _MPRKTableau *MPRKTableau;
284b84eec9SHong Zhang struct _MPRKTableau {
294b84eec9SHong Zhang   char      *name;
304b84eec9SHong Zhang   PetscInt  order;                          /* Classical approximation order of the method i */
3179bc8a77SHong Zhang   PetscInt  sbase;                          /* Number of stages in the base method*/
324b84eec9SHong Zhang   PetscInt  s;                              /* Number of stages */
3319c2959aSHong Zhang   PetscInt  np;                             /* Number of partitions */
344b84eec9SHong Zhang   PetscReal *Af,*bf,*cf;                    /* Tableau for fast components */
3519c2959aSHong Zhang   PetscReal *Amb,*bmb,*cmb;                 /* Tableau for medium components */
3619c2959aSHong Zhang   PetscInt  *rmb;                           /* Array of flags for repeated stages in medium method */
3719c2959aSHong Zhang   PetscReal *Asb,*bsb,*csb;                 /* Tableau for slow components */
3819c2959aSHong Zhang   PetscInt  *rsb;                           /* Array of flags for repeated staged in slow method*/
394b84eec9SHong Zhang };
404b84eec9SHong Zhang typedef struct _MPRKTableauLink *MPRKTableauLink;
414b84eec9SHong Zhang struct _MPRKTableauLink {
424b84eec9SHong Zhang   struct _MPRKTableau tab;
434b84eec9SHong Zhang   MPRKTableauLink     next;
444b84eec9SHong Zhang };
454b84eec9SHong Zhang static MPRKTableauLink MPRKTableauList;
464b84eec9SHong Zhang 
474b84eec9SHong Zhang typedef struct {
484b84eec9SHong Zhang   MPRKTableau         tableau;
494b84eec9SHong Zhang   Vec                 *Y;                          /* States computed during the step                           */
507c0df07dSHong Zhang   Vec                 *YdotRHS;
514b84eec9SHong Zhang   Vec                 *YdotRHS_slow;               /* Function evaluations by slow tableau for slow components  */
5219c2959aSHong Zhang   Vec                 *YdotRHS_slowbuffer;         /* Function evaluations by slow tableau for slow components  */
5319c2959aSHong Zhang   Vec                 *YdotRHS_medium;             /* Function evaluations by slow tableau for slow components  */
5419c2959aSHong Zhang   Vec                 *YdotRHS_mediumbuffer;       /* Function evaluations by slow tableau for slow components  */
5519c2959aSHong Zhang   Vec                 *YdotRHS_fast;               /* Function evaluations by fast tableau for fast components  */
564b84eec9SHong Zhang   PetscScalar         *work_slow;                  /* Scalar work_slow by slow tableau                          */
5719c2959aSHong Zhang   PetscScalar         *work_slowbuffer;            /* Scalar work_slow by slow tableau                          */
5819c2959aSHong Zhang   PetscScalar         *work_medium;                /* Scalar work_slow by medium tableau                        */
5919c2959aSHong Zhang   PetscScalar         *work_mediumbuffer;          /* Scalar work_slow by medium tableau                        */
6019c2959aSHong Zhang   PetscScalar         *work_fast;                  /* Scalar work_fast by fast tableau                          */
614b84eec9SHong Zhang   PetscReal           stage_time;
624b84eec9SHong Zhang   TSStepStatus        status;
634b84eec9SHong Zhang   PetscReal           ptime;
644b84eec9SHong Zhang   PetscReal           time_step;
6519c2959aSHong Zhang   IS                  is_slow,is_slowbuffer,is_medium,is_mediumbuffer,is_fast;
6619c2959aSHong Zhang   TS                  subts_slow,subts_slowbuffer,subts_medium,subts_mediumbuffer,subts_fast;
674b84eec9SHong Zhang } TS_MPRK;
684b84eec9SHong Zhang 
6919c2959aSHong Zhang static PetscErrorCode TSMPRKGenerateTableau2(PetscInt ratio,PetscInt s,const PetscReal Abase[],const PetscReal bbase[],PetscReal A1[],PetscReal b1[],PetscReal A2[],PetscReal b2[])
7019c2959aSHong Zhang {
7119c2959aSHong Zhang   PetscInt i,j,k,l;
7219c2959aSHong Zhang 
7319c2959aSHong Zhang   PetscFunctionBegin;
7419c2959aSHong Zhang   for (k=0; k<ratio; k++) {
7519c2959aSHong Zhang     /* diagonal blocks */
7619c2959aSHong Zhang     for (i=0; i<s; i++)
7719c2959aSHong Zhang       for (j=0; j<s; j++) {
7819c2959aSHong Zhang         A1[(k*s+i)*ratio*s+k*s+j] = Abase[i*s+j];
7919c2959aSHong Zhang         A2[(k*s+i)*ratio*s+k*s+j] = Abase[i*s+j]/ratio;
8019c2959aSHong Zhang       }
8119c2959aSHong Zhang     /* off diagonal blocks */
8219c2959aSHong Zhang     for (l=0; l<k; l++)
8319c2959aSHong Zhang       for (i=0; i<s; i++)
8419c2959aSHong Zhang         for (j=0; j<s; j++)
8519c2959aSHong Zhang           A2[(k*s+i)*ratio*s+l*s+j] = bbase[j]/ratio;
8619c2959aSHong Zhang     for (j=0; j<s; j++) {
8719c2959aSHong Zhang       b1[k*s+j] = bbase[j]/ratio;
8819c2959aSHong Zhang       b2[k*s+j] = bbase[j]/ratio;
8919c2959aSHong Zhang     }
9019c2959aSHong Zhang   }
9119c2959aSHong Zhang   PetscFunctionReturn(0);
9219c2959aSHong Zhang }
9319c2959aSHong Zhang 
9419c2959aSHong Zhang static PetscErrorCode TSMPRKGenerateTableau3(PetscInt ratio,PetscInt s,const PetscReal Abase[],const PetscReal bbase[],PetscReal A1[],PetscReal b1[],PetscReal A2[],PetscReal b2[],PetscReal A3[],PetscReal b3[])
9519c2959aSHong Zhang {
9619c2959aSHong Zhang   PetscInt i,j,k,l,m,n;
9719c2959aSHong Zhang 
9819c2959aSHong Zhang   PetscFunctionBegin;
9919c2959aSHong Zhang   for (k=0; k<ratio; k++) { /* diagonal blocks of size ratio*s by ratio*s */
10019c2959aSHong Zhang     for (l=0; l<ratio; l++) /* diagonal sub-blocks of size s by s */
10119c2959aSHong Zhang       for (i=0; i<s; i++)
10219c2959aSHong Zhang         for (j=0; j<s; j++) {
10319c2959aSHong Zhang           A1[((k*ratio+l)*s+i)*ratio*ratio*s+(k*ratio+l)*s+j] = Abase[i*s+j];
10419c2959aSHong Zhang           A2[((k*ratio+l)*s+i)*ratio*ratio*s+(k*ratio+l)*s+j] = Abase[i*s+j]/ratio;
10519c2959aSHong Zhang           A3[((k*ratio+l)*s+i)*ratio*ratio*s+(k*ratio+l)*s+j] = Abase[i*s+j]/ratio/ratio;
10619c2959aSHong Zhang         }
10719c2959aSHong Zhang     for (l=0; l<k; l++) /* off-diagonal blocks of size ratio*s by ratio*s */
10819c2959aSHong Zhang       for (m=0; m<ratio; m++)
10919c2959aSHong Zhang         for (n=0; n<ratio; n++)
11019c2959aSHong Zhang           for (i=0; i<s; i++)
11119c2959aSHong Zhang             for (j=0; j<s; j++) {
11219c2959aSHong Zhang                A2[((k*ratio+m)*s+i)*ratio*ratio*s+(l*ratio+n)*s+j] = bbase[j]/ratio/ratio;
11319c2959aSHong Zhang                A3[((k*ratio+m)*s+i)*ratio*ratio*s+(l*ratio+n)*s+j] = bbase[j]/ratio/ratio;
11419c2959aSHong Zhang             }
11519c2959aSHong Zhang     for (m=0; m<ratio; m++)
11619c2959aSHong Zhang       for (n=0; n<m; n++) /* off-diagonal sub-blocks of size s by s in the diagonal blocks */
11719c2959aSHong Zhang           for (i=0; i<s; i++)
11819c2959aSHong Zhang             for (j=0; j<s; j++)
11919c2959aSHong Zhang                A3[((k*ratio+m)*s+i)*ratio*ratio*s+(k*ratio+n)*s+j] = bbase[j]/ratio/ratio;
12019c2959aSHong Zhang     for (n=0; n<ratio; n++)
12119c2959aSHong Zhang       for (j=0; j<s; j++) {
12219c2959aSHong Zhang         b1[(k*ratio+n)*s+j] = bbase[j]/ratio/ratio;
12319c2959aSHong Zhang         b2[(k*ratio+n)*s+j] = bbase[j]/ratio/ratio;
12419c2959aSHong Zhang         b3[(k*ratio+n)*s+j] = bbase[j]/ratio/ratio;
12519c2959aSHong Zhang       }
12619c2959aSHong Zhang   }
12719c2959aSHong Zhang   PetscFunctionReturn(0);
12819c2959aSHong Zhang }
12919c2959aSHong Zhang 
1304b84eec9SHong Zhang /*MC
131f944a40eSHong Zhang      TSMPRK2A22 - Second Order Multirate Partitioned Runge Kutta scheme based on RK2A.
1324b84eec9SHong Zhang 
13319c2959aSHong Zhang      This method has four stages for slow and fast parts. The refinement factor of the stepsize is 2.
13419c2959aSHong Zhang      r = 2, np = 2
1354b84eec9SHong Zhang      Options database:
13619c2959aSHong Zhang .     -ts_mprk_type 2a22
1374b84eec9SHong Zhang 
1384b84eec9SHong Zhang      Level: advanced
1394b84eec9SHong Zhang 
1404b84eec9SHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
1414b84eec9SHong Zhang M*/
1424b84eec9SHong Zhang /*MC
143f944a40eSHong Zhang      TSMPRK2A23 - Second Order Multirate Partitioned Runge-Kutta scheme based on RK2A.
14419c2959aSHong Zhang 
14519c2959aSHong Zhang      This method has eight stages for slow and medium and fast parts. The refinement factor of the stepsize is 2.
14619c2959aSHong Zhang      r = 2, np = 3
14719c2959aSHong Zhang      Options database:
14819c2959aSHong Zhang .     -ts_mprk_type 2a23
14919c2959aSHong Zhang 
15019c2959aSHong Zhang      Level: advanced
15119c2959aSHong Zhang 
15219c2959aSHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
15319c2959aSHong Zhang M*/
15419c2959aSHong Zhang /*MC
155f944a40eSHong Zhang      TSMPRK2A32 - Second Order Multirate Partitioned Runge-Kutta scheme based on RK2A.
15619c2959aSHong Zhang 
15719c2959aSHong Zhang      This method has four stages for slow and fast parts. The refinement factor of the stepsize is 3.
15819c2959aSHong Zhang      r = 3, np = 2
15919c2959aSHong Zhang      Options database:
16019c2959aSHong Zhang .     -ts_mprk_type 2a32
16119c2959aSHong Zhang 
16219c2959aSHong Zhang      Level: advanced
16319c2959aSHong Zhang 
16419c2959aSHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
16519c2959aSHong Zhang M*/
16619c2959aSHong Zhang /*MC
167f944a40eSHong Zhang      TSMPRK2A33 - Second Order Multirate Partitioned Runge-Kutta scheme based on RK2A.
16819c2959aSHong Zhang 
16919c2959aSHong Zhang      This method has eight stages for slow and medium and fast parts. The refinement factor of the stepsize is 3.
17019c2959aSHong Zhang      r = 3, np = 3
17119c2959aSHong Zhang      Options database:
17219c2959aSHong Zhang .     -ts_mprk_type 2a33
17319c2959aSHong Zhang 
17419c2959aSHong Zhang      Level: advanced
17519c2959aSHong Zhang 
17619c2959aSHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
17719c2959aSHong Zhang M*/
17819c2959aSHong Zhang /*MC
179f944a40eSHong Zhang      TSMPRK3P2M - Third Order Multirate Partitioned Runge-Kutta scheme.
1804b84eec9SHong Zhang 
1814b84eec9SHong Zhang      This method has eight stages for both slow and fast parts.
1824b84eec9SHong Zhang 
1834b84eec9SHong Zhang      Options database:
1844b84eec9SHong Zhang .     -ts_mprk_type pm3  (put here temporarily)
1854b84eec9SHong Zhang 
1864b84eec9SHong Zhang      Level: advanced
1874b84eec9SHong Zhang 
1884b84eec9SHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
1894b84eec9SHong Zhang M*/
1904b84eec9SHong Zhang /*MC
191f944a40eSHong Zhang      TSMPRKP2 - Second Order Multirate Partitioned Runge-Kutta scheme.
1924b84eec9SHong Zhang 
1934b84eec9SHong Zhang      This method has five stages for both slow and fast parts.
1944b84eec9SHong Zhang 
1954b84eec9SHong Zhang      Options database:
1964b84eec9SHong Zhang .     -ts_mprk_type p2
1974b84eec9SHong Zhang 
1984b84eec9SHong Zhang      Level: advanced
1994b84eec9SHong Zhang 
2004b84eec9SHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
2014b84eec9SHong Zhang M*/
2024b84eec9SHong Zhang /*MC
203f944a40eSHong Zhang      TSMPRKP3 - Third Order Multirate Partitioned Runge-Kutta scheme.
2044b84eec9SHong Zhang 
2054b84eec9SHong Zhang      This method has ten stages for both slow and fast parts.
2064b84eec9SHong Zhang 
2074b84eec9SHong Zhang      Options database:
2084b84eec9SHong Zhang .     -ts_mprk_type p3
2094b84eec9SHong Zhang 
2104b84eec9SHong Zhang      Level: advanced
2114b84eec9SHong Zhang 
2124b84eec9SHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
2134b84eec9SHong Zhang M*/
2144b84eec9SHong Zhang 
2154b84eec9SHong Zhang /*@C
2164b84eec9SHong Zhang   TSMPRKRegisterAll - Registers all of the Partirioned Runge-Kutta explicit methods in TSMPRK
2174b84eec9SHong Zhang 
2184b84eec9SHong Zhang   Not Collective, but should be called by all processes which will need the schemes to be registered
2194b84eec9SHong Zhang 
2204b84eec9SHong Zhang   Level: advanced
2214b84eec9SHong Zhang 
2224b84eec9SHong Zhang .keywords: TS, TSMPRK, register, all
2234b84eec9SHong Zhang 
2244b84eec9SHong Zhang .seealso:  TSMPRKRegisterDestroy()
2254b84eec9SHong Zhang @*/
2264b84eec9SHong Zhang PetscErrorCode TSMPRKRegisterAll(void)
2274b84eec9SHong Zhang {
2284b84eec9SHong Zhang   PetscErrorCode ierr;
2294b84eec9SHong Zhang 
2304b84eec9SHong Zhang   PetscFunctionBegin;
2314b84eec9SHong Zhang   if (TSMPRKRegisterAllCalled) PetscFunctionReturn(0);
2324b84eec9SHong Zhang   TSMPRKRegisterAllCalled = PETSC_TRUE;
2334b84eec9SHong Zhang 
2344b84eec9SHong Zhang #define RC PetscRealConstant
2354b84eec9SHong Zhang   {
2364b84eec9SHong Zhang     const PetscReal
23719c2959aSHong Zhang       Abase[2][2] = {{0,0},
23819c2959aSHong Zhang                      {RC(1.0),0}},
23919c2959aSHong Zhang       bbase[2] = {RC(0.5),RC(0.5)};
24019c2959aSHong Zhang     PetscReal
24119c2959aSHong Zhang       Asb[4][4] = {{0}},Af[4][4] = {{0}},bsb[4] = {0},bf[4] = {0};
24219c2959aSHong Zhang     PetscInt
24319c2959aSHong Zhang       rsb[4] = {0,0,1,2};
24419c2959aSHong Zhang     ierr = TSMPRKGenerateTableau2(2,2,&Abase[0][0],bbase,&Asb[0][0],bsb,&Af[0][0],bf);CHKERRQ(ierr);
24579bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRK2A22,2,2,2,1,&Asb[0][0],bsb,NULL,rsb,NULL,NULL,NULL,NULL,&Af[0][0],bf,NULL);CHKERRQ(ierr);
2464b84eec9SHong Zhang   }
24719c2959aSHong Zhang   {
24819c2959aSHong Zhang     const PetscReal
24919c2959aSHong Zhang       Abase[2][2] = {{0,0},
25019c2959aSHong Zhang                      {RC(1.0),0}},
25119c2959aSHong Zhang       bbase[2]    = {RC(0.5),RC(0.5)};
25219c2959aSHong Zhang     PetscReal
25319c2959aSHong Zhang       Asb[8][8] = {{0}},Amb[8][8] = {{0}},Af[8][8] = {{0}},bsb[8] ={0},bmb[8] = {0},bf[8] = {0};
25419c2959aSHong Zhang     PetscInt
25519c2959aSHong Zhang       rsb[8] = {0,0,1,2,1,2,1,2},rmb[8] = {0,0,1,2,0,0,5,6};
25619c2959aSHong Zhang     ierr = TSMPRKGenerateTableau3(2,2,&Abase[0][0],bbase,&Asb[0][0],bsb,&Amb[0][0],bmb,&Af[0][0],bf);CHKERRQ(ierr);
25779bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRK2A23,2,2,2,2,&Asb[0][0],bsb,NULL,rsb,&Amb[0][0],bmb,NULL,rmb,&Af[0][0],bf,NULL);CHKERRQ(ierr);
25819c2959aSHong Zhang   }
25919c2959aSHong Zhang   {
26019c2959aSHong Zhang     const PetscReal
26119c2959aSHong Zhang       Abase[2][2] = {{0,0},
26219c2959aSHong Zhang                      {RC(1.0),0}},
26319c2959aSHong Zhang       bbase[2]    = {RC(0.5),RC(0.5)};
26419c2959aSHong Zhang     PetscReal
26519c2959aSHong Zhang       Asb[6][6] = {{0}},Af[6][6] = {{0}},bsb[6] = {0},bf[6] = {0};
26619c2959aSHong Zhang     PetscInt
26719c2959aSHong Zhang       rsb[6] = {0,0,1,2,1,2};
26819c2959aSHong Zhang     ierr = TSMPRKGenerateTableau2(3,2,&Abase[0][0],bbase,&Asb[0][0],bsb,&Af[0][0],bf);CHKERRQ(ierr);
26979bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRK2A32,2,2,3,1,&Asb[0][0],bsb,NULL,rsb,NULL,NULL,NULL,NULL,&Af[0][0],bf,NULL);CHKERRQ(ierr);
27019c2959aSHong Zhang   }
27119c2959aSHong Zhang   {
27219c2959aSHong Zhang     const PetscReal
27319c2959aSHong Zhang       Abase[2][2] = {{0,0},
27419c2959aSHong Zhang                      {RC(1.0),0}},
27519c2959aSHong Zhang       bbase[2]    = {RC(0.5),RC(0.5)};
27619c2959aSHong Zhang     PetscReal
27719c2959aSHong Zhang       Asb[18][18] = {{0}},Amb[18][18] = {{0}},Af[18][18] = {{0}},bsb[18] ={0},bmb[18] = {0},bf[18] = {0};
27819c2959aSHong Zhang     PetscInt
27919c2959aSHong Zhang       rsb[18] = {0,0,1,2,1,2,1,2,1,2,1,2,1,2,1,2,1,2},rmb[18] = {0,0,1,2,1,2,0,0,7,8,7,8,0,0,13,14,13,14};
28019c2959aSHong Zhang     ierr = TSMPRKGenerateTableau3(3,2,&Abase[0][0],bbase,&Asb[0][0],bsb,&Amb[0][0],bmb,&Af[0][0],bf);CHKERRQ(ierr);
28179bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRK2A33,2,2,3,3,&Asb[0][0],bsb,NULL,rsb,&Amb[0][0],bmb,NULL,rmb,&Af[0][0],bf,NULL);CHKERRQ(ierr);
28219c2959aSHong Zhang   }
28319c2959aSHong Zhang /*
28419c2959aSHong Zhang     PetscReal
28519c2959aSHong Zhang       Asb[8][8] = {{Abase[0][0],Abase[0][1],0,0,0,0,0,0},
28619c2959aSHong Zhang                    {Abase[1][0],Abase[1][1],0,0,0,0,0,0},
28719c2959aSHong Zhang                    {0,0,Abase[0][0],Abase[0][1],0,0,0,0},
28819c2959aSHong Zhang                    {0,0,Abase[1][0],Abase[1][1],0,0,0,0},
28919c2959aSHong Zhang                    {0,0,0,0,Abase[0][0],Abase[0][1],0,0},
29019c2959aSHong Zhang                    {0,0,0,0,Abase[1][0],Abase[1][1],0,0},
29119c2959aSHong Zhang                    {0,0,0,0,0,0,Abase[0][0],Abase[0][1]},
29219c2959aSHong Zhang                    {0,0,0,0,0,0,Abase[1][0],Abase[1][1]}},
29319c2959aSHong Zhang       Amb[8][8] = {{Abase[0][0]/m,Abase[0][1]/m,0,0,0,0,0,0},
29419c2959aSHong Zhang                    {Abase[1][0]/m,Abase[1][1]/m,0,0,0,0,0,0},
29519c2959aSHong Zhang                    {0,0,Abase[0][0]/m,Abase[0][1]/m,0,0,0,0},
29619c2959aSHong Zhang                    {0,0,Abase[1][0]/m,Abase[1][1]/m,0,0,0,0},
29719c2959aSHong Zhang                    {bbase[0]/m,bbase[1]/m,bbase[0]/m,bbase[1]/m,Abase[0][0]/m,Abase[0][1]/m,0,0},
29819c2959aSHong Zhang                    {bbase[0]/m,bbase[1]/m,bbase[0]/m,bbase[1]/m,Abase[1][0]/m,Abase[1][1]/m,0,0},
29919c2959aSHong Zhang                    {bbase[0]/m,bbase[1]/m,bbase[0]/m,bbase[1]/m,0,0,Abase[0][0]/m,Abase[0][1]/m},
30019c2959aSHong Zhang                    {bbase[0]/m,bbase[1]/m,bbase[0]/m,bbase[1]/m,0,0,Abase[1][0]/m,Abase[1][1]/m}},
30119c2959aSHong Zhang       Af[8][8] = {{Abase[0][0]/m/m,Abase[0][1]/m/m,0,0,0,0,0,0},
30219c2959aSHong Zhang                    {Abase[1][0]/m/m,Abase[1][1]/m/m,0,0,0,0,0,0},
30319c2959aSHong Zhang                    {0,0,Abase[0][0]/m/m,Abase[0][1]/m/m,0,0,0,0},
30419c2959aSHong Zhang                    {0,0,Abase[1][0]/m/m,Abase[1][1]/m/m,0,0,0,0},
30519c2959aSHong Zhang                    {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,Abase[0][0]/m/m,Abase[0][1]/m/m,0,0},
30619c2959aSHong Zhang                    {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,Abase[1][0]/m/m,Abase[1][1]/m/m,0,0},
30719c2959aSHong Zhang                    {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,Abase[0][0]/m,Abase[0][1]/m},
30819c2959aSHong Zhang                    {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,Abase[1][0]/m,Abase[1][1]/m}},
30919c2959aSHong Zhang       bsb[8]    = {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m},
31019c2959aSHong Zhang       bmb[8]    = {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m,bbase[1]/m/m},
31119c2959aSHong Zhang       bf[8]     = {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m,bbase[0]/m/m,bbase[1]/m/m},
31219c2959aSHong Zhang */
3134b84eec9SHong Zhang   /*{
3144b84eec9SHong Zhang       const PetscReal
3154b84eec9SHong Zhang         As[8][8] = {{0,0,0,0,0,0,0,0},
3164b84eec9SHong Zhang                     {RC(1.0)/RC(2.0),0,0,0,0,0,0,0},
3174b84eec9SHong Zhang                     {RC(-1.0)/RC(6.0),RC(2.0)/RC(3.0),0,0,0,0,0,0},
3184b84eec9SHong Zhang                     {RC(1.0)/RC(3.0),RC(-1.0)/RC(3.0),RC(1.0),0,0,0,0,0},
3194b84eec9SHong Zhang                     {0,0,0,0,0,0,0,0},
3204b84eec9SHong Zhang                     {0,0,0,0,RC(1.0)/RC(2.0),0,0,0},
3214b84eec9SHong Zhang                     {0,0,0,0,RC(-1.0)/RC(6.0),RC(2.0)/RC(3.0),0,0},
3224b84eec9SHong Zhang                     {0,0,0,0,RC(1.0)/RC(3.0),RC(-1.0)/RC(3.0),RC(1.0),0}},
3234b84eec9SHong Zhang          A[8][8] = {{0,0,0,0,0,0,0,0},
3244b84eec9SHong Zhang                     {RC(1.0)/RC(4.0),0,0,0,0,0,0,0},
3254b84eec9SHong Zhang                     {RC(-1.0)/RC(12.0),RC(1.0)/RC(3.0),0,0,0,0,0,0},
3264b84eec9SHong Zhang                     {RC(1.0)/RC(6.0),RC(-1.0)/RC(6.0),RC(1.0)/RC(2.0),0,0,0,0,0},
3274b84eec9SHong Zhang                     {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,0,0,0},
3284b84eec9SHong Zhang                     {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),RC(1.0)/RC(4.0),0,0,0},
3294b84eec9SHong Zhang                     {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),RC(-1.0)/RC(12.0),RC(1.0)/RC(3.0),0,0},
3304b84eec9SHong Zhang                     {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(-1.0)/RC(6.0),RC(1.0)/RC(2.0),0}},
3314b84eec9SHong Zhang           bs[8] = {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0)},
3324b84eec9SHong Zhang            b[8] = {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0)};
3334b84eec9SHong Zhang            ierr = TSMPRKRegister(TSMPRKPM3,3,8,&As[0][0],bs,NULL,&A[0][0],b,NULL);CHKERRQ(ierr);
3344b84eec9SHong Zhang   }*/
3354b84eec9SHong Zhang 
3364b84eec9SHong Zhang   {
3374b84eec9SHong Zhang     const PetscReal
33819c2959aSHong Zhang       Asb[5][5] = {{0,0,0,0,0},
3394b84eec9SHong Zhang                    {RC(1.0)/RC(2.0),0,0,0,0},
3404b84eec9SHong Zhang                    {RC(1.0)/RC(2.0),0,0,0,0},
3414b84eec9SHong Zhang                    {RC(1.0),0,0,0,0},
3424b84eec9SHong Zhang                    {RC(1.0),0,0,0,0}},
34319c2959aSHong Zhang       Af[5][5]  = {{0,0,0,0,0},
3444b84eec9SHong Zhang                    {RC(1.0)/RC(2.0),0,0,0,0},
3454b84eec9SHong Zhang                    {RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),0,0,0},
3464b84eec9SHong Zhang                    {RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),RC(1.0)/RC(2.0),0,0},
3474b84eec9SHong Zhang                    {RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),0}},
34819c2959aSHong Zhang       bsb[5]    = {RC(1.0)/RC(2.0),0,0,0,RC(1.0)/RC(2.0)},
34919c2959aSHong Zhang       bf[5]     = {RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),0};
35019c2959aSHong Zhang     const PetscInt
35119c2959aSHong Zhang       rsb[5]    = {0,0,2,0,4};
35279bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRKP2,2,5,1,1,&Asb[0][0],bsb,NULL,rsb,NULL,NULL,NULL,NULL,&Af[0][0],bf,NULL);CHKERRQ(ierr);
3534b84eec9SHong Zhang   }
3544b84eec9SHong Zhang 
3554b84eec9SHong Zhang   {
3564b84eec9SHong Zhang     const PetscReal
35719c2959aSHong Zhang       Asb[10][10] = {{0,0,0,0,0,0,0,0,0,0},
3584b84eec9SHong Zhang                      {RC(1.0)/RC(4.0),0,0,0,0,0,0,0,0,0},
3594b84eec9SHong Zhang                      {RC(1.0)/RC(4.0),0,0,0,0,0,0,0,0,0},
3604b84eec9SHong Zhang                      {RC(1.0)/RC(2.0),0,0,0,0,0,0,0,0,0},
3614b84eec9SHong Zhang                      {RC(1.0)/RC(2.0),0,0,0,0,0,0,0,0,0},
3624b84eec9SHong Zhang                      {RC(-1.0)/RC(6.0),0,0,0,RC(2.0)/RC(3.0),0,0,0,0,0},
3634b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),0,0,0,RC(1.0)/RC(6.0),RC(1.0)/RC(2.0),0,0,0,0},
3644b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),0,0,0,RC(1.0)/RC(6.0),RC(1.0)/RC(2.0),0,0,0,0},
3654b84eec9SHong Zhang                      {RC(1.0)/RC(3.0),0,0,0,RC(-1.0)/RC(3.0),RC(1.0),0,0,0,0},
3664b84eec9SHong Zhang                      {RC(1.0)/RC(3.0),0,0,0,RC(-1.0)/RC(3.0),RC(1.0),0,0,0,0}},
36719c2959aSHong Zhang       Af[10][10]  = {{0,0,0,0,0,0,0,0,0,0},
3684b84eec9SHong Zhang                      {RC(1.0)/RC(4.0),0,0,0,0,0,0,0,0,0},
3694b84eec9SHong Zhang                      {RC(-1.0)/RC(12.0),RC(1.0)/RC(3.0),0,0,0,0,0,0,0,0},
3704b84eec9SHong Zhang                      {RC(1.0)/RC(6.0),RC(-1.0)/RC(6.0),RC(1.0)/RC(2.0),0,0,0,0,0,0,0},
3714b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,0,0,0,0,0},
3724b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,0,0,0,0,0},
3734b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,RC(1.0)/RC(4.0),0,0,0,0},
3744b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,RC(-1.0)/RC(12.0),RC(1.0)/RC(3.0),0,0,0},
3754b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,RC(1.0)/RC(6.0),RC(-1.0)/RC(6.0),RC(1.0)/RC(2.0),0,0},
3764b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0}},
37719c2959aSHong Zhang       bsb[10]     = {RC(1.0)/RC(6.0),0,0,0,RC(1.0)/RC(3.0),RC(1.0)/RC(3.0),0,0,0,RC(1.0)/RC(6.0)},
37819c2959aSHong Zhang       bf[10]      = {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0};
37919c2959aSHong Zhang     const PetscInt
38019c2959aSHong Zhang       rsb[10]     = {0,0,2,0,4,0,0,7,0,9};
38179bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRKP3,3,5,2,1,&Asb[0][0],bsb,NULL,rsb,NULL,NULL,NULL,NULL,&Af[0][0],bf,NULL);CHKERRQ(ierr);
3824b84eec9SHong Zhang   }
3834b84eec9SHong Zhang #undef RC
3844b84eec9SHong Zhang   PetscFunctionReturn(0);
3854b84eec9SHong Zhang }
3864b84eec9SHong Zhang 
3874b84eec9SHong Zhang /*@C
3884b84eec9SHong Zhang    TSMPRKRegisterDestroy - Frees the list of schemes that were registered by TSMPRKRegister().
3894b84eec9SHong Zhang 
3904b84eec9SHong Zhang    Not Collective
3914b84eec9SHong Zhang 
3924b84eec9SHong Zhang    Level: advanced
3934b84eec9SHong Zhang 
3944b84eec9SHong Zhang .keywords: TSMPRK, register, destroy
3954b84eec9SHong Zhang .seealso: TSMPRKRegister(), TSMPRKRegisterAll()
3964b84eec9SHong Zhang @*/
3974b84eec9SHong Zhang PetscErrorCode TSMPRKRegisterDestroy(void)
3984b84eec9SHong Zhang {
3994b84eec9SHong Zhang   PetscErrorCode ierr;
4004b84eec9SHong Zhang   MPRKTableauLink link;
4014b84eec9SHong Zhang 
4024b84eec9SHong Zhang   PetscFunctionBegin;
4034b84eec9SHong Zhang   while ((link = MPRKTableauList)) {
4044b84eec9SHong Zhang     MPRKTableau t = &link->tab;
4054b84eec9SHong Zhang     MPRKTableauList = link->next;
40619c2959aSHong Zhang     ierr = PetscFree3(t->Asb,t->bsb,t->csb);CHKERRQ(ierr);
40719c2959aSHong Zhang     ierr = PetscFree3(t->Amb,t->bmb,t->cmb);CHKERRQ(ierr);
4084b84eec9SHong Zhang     ierr = PetscFree3(t->Af,t->bf,t->cf);CHKERRQ(ierr);
409*41eb3033SHong Zhang     ierr = PetscFree(t->rsb);CHKERRQ(ierr);
410*41eb3033SHong Zhang     ierr = PetscFree(t->rmb);CHKERRQ(ierr);
4114b84eec9SHong Zhang     ierr = PetscFree(t->name);CHKERRQ(ierr);
4124b84eec9SHong Zhang     ierr = PetscFree(link);CHKERRQ(ierr);
4134b84eec9SHong Zhang   }
4144b84eec9SHong Zhang   TSMPRKRegisterAllCalled = PETSC_FALSE;
4154b84eec9SHong Zhang   PetscFunctionReturn(0);
4164b84eec9SHong Zhang }
4174b84eec9SHong Zhang 
4184b84eec9SHong Zhang /*@C
4194b84eec9SHong Zhang   TSMPRKInitializePackage - This function initializes everything in the TSMPRK package. It is called
4204b84eec9SHong Zhang   from PetscDLLibraryRegister() when using dynamic libraries, and on the first call to TSCreate_MPRK()
4214b84eec9SHong Zhang   when using static libraries.
4224b84eec9SHong Zhang 
4234b84eec9SHong Zhang   Level: developer
4244b84eec9SHong Zhang 
4254b84eec9SHong Zhang .keywords: TS, TSMPRK, initialize, package
4264b84eec9SHong Zhang .seealso: PetscInitialize()
4274b84eec9SHong Zhang @*/
4284b84eec9SHong Zhang PetscErrorCode TSMPRKInitializePackage(void)
4294b84eec9SHong Zhang {
4304b84eec9SHong Zhang   PetscErrorCode ierr;
4314b84eec9SHong Zhang 
4324b84eec9SHong Zhang   PetscFunctionBegin;
4334b84eec9SHong Zhang   if (TSMPRKPackageInitialized) PetscFunctionReturn(0);
4344b84eec9SHong Zhang   TSMPRKPackageInitialized = PETSC_TRUE;
4354b84eec9SHong Zhang   ierr = TSMPRKRegisterAll();CHKERRQ(ierr);
4364b84eec9SHong Zhang   ierr = PetscRegisterFinalize(TSMPRKFinalizePackage);CHKERRQ(ierr);
4374b84eec9SHong Zhang   PetscFunctionReturn(0);
4384b84eec9SHong Zhang }
4394b84eec9SHong Zhang 
4404b84eec9SHong Zhang /*@C
441f944a40eSHong Zhang   TSMPRKFinalizePackage - This function destroys everything in the TSMPRK package. It is
4424b84eec9SHong Zhang   called from PetscFinalize().
4434b84eec9SHong Zhang 
4444b84eec9SHong Zhang   Level: developer
4454b84eec9SHong Zhang 
4464b84eec9SHong Zhang .keywords: Petsc, destroy, package
4474b84eec9SHong Zhang .seealso: PetscFinalize()
4484b84eec9SHong Zhang @*/
4494b84eec9SHong Zhang PetscErrorCode TSMPRKFinalizePackage(void)
4504b84eec9SHong Zhang {
4514b84eec9SHong Zhang   PetscErrorCode ierr;
4524b84eec9SHong Zhang 
4534b84eec9SHong Zhang   PetscFunctionBegin;
4544b84eec9SHong Zhang   TSMPRKPackageInitialized = PETSC_FALSE;
4554b84eec9SHong Zhang   ierr = TSMPRKRegisterDestroy();CHKERRQ(ierr);
4564b84eec9SHong Zhang   PetscFunctionReturn(0);
4574b84eec9SHong Zhang }
4584b84eec9SHong Zhang 
4594b84eec9SHong Zhang /*@C
4604b84eec9SHong Zhang    TSMPRKRegister - register a MPRK scheme by providing the entries in the Butcher tableau
4614b84eec9SHong Zhang 
4624b84eec9SHong Zhang    Not Collective, but the same schemes should be registered on all processes on which they will be used
4634b84eec9SHong Zhang 
4644b84eec9SHong Zhang    Input Parameters:
4654b84eec9SHong Zhang +  name - identifier for method
4664b84eec9SHong Zhang .  order - approximation order of method
46779bc8a77SHong Zhang .  s  - number of stages in the base methods
46879bc8a77SHong Zhang .  ratio1 - stepsize ratio at 1st level (e.g. slow/medium)
46979bc8a77SHong Zhang .  ratio2 - stepsize ratio at 2nd level (e.g. medium/fast)
4704b84eec9SHong Zhang .  Af - stage coefficients for fast components(dimension s*s, row-major)
4714b84eec9SHong Zhang .  bf - step completion table for fast components(dimension s)
4724b84eec9SHong Zhang .  cf - abscissa for fast components(dimension s)
4734b84eec9SHong Zhang .  As - stage coefficients for slow components(dimension s*s, row-major)
4744b84eec9SHong Zhang .  bs - step completion table for slow components(dimension s)
4754b84eec9SHong Zhang -  cs - abscissa for slow components(dimension s)
4764b84eec9SHong Zhang 
4774b84eec9SHong Zhang    Notes:
4784b84eec9SHong Zhang    Several MPRK methods are provided, this function is only needed to create new methods.
4794b84eec9SHong Zhang 
4804b84eec9SHong Zhang    Level: advanced
4814b84eec9SHong Zhang 
4824b84eec9SHong Zhang .keywords: TS, register
4834b84eec9SHong Zhang 
4844b84eec9SHong Zhang .seealso: TSMPRK
4854b84eec9SHong Zhang @*/
48679bc8a77SHong Zhang PetscErrorCode TSMPRKRegister(TSMPRKType name,PetscInt order,
48779bc8a77SHong Zhang                               PetscInt sbase,PetscInt ratio1,PetscInt ratio2,
48819c2959aSHong Zhang                               const PetscReal Asb[],const PetscReal bsb[],const PetscReal csb[],const PetscInt rsb[],
48919c2959aSHong Zhang                               const PetscReal Amb[],const PetscReal bmb[],const PetscReal cmb[],const PetscInt rmb[],
4904b84eec9SHong Zhang                               const PetscReal Af[],const PetscReal bf[],const PetscReal cf[])
4914b84eec9SHong Zhang {
4924b84eec9SHong Zhang   MPRKTableauLink link;
4934b84eec9SHong Zhang   MPRKTableau     t;
49479bc8a77SHong Zhang   PetscInt        s,i,j;
4954b84eec9SHong Zhang   PetscErrorCode  ierr;
4964b84eec9SHong Zhang 
4974b84eec9SHong Zhang   PetscFunctionBegin;
4984b84eec9SHong Zhang   PetscValidCharPointer(name,1);
49919c2959aSHong Zhang   PetscValidRealPointer(Asb,4);
50079bc8a77SHong Zhang   if (bsb) PetscValidRealPointer(bsb,7);
50179bc8a77SHong Zhang   if (csb) PetscValidRealPointer(csb,8);
50279bc8a77SHong Zhang   if (rsb) PetscValidRealPointer(rsb,9);
50379bc8a77SHong Zhang   if (Amb) PetscValidRealPointer(Amb,10);
50479bc8a77SHong Zhang   if (bmb) PetscValidRealPointer(bmb,11);
50579bc8a77SHong Zhang   if (cmb) PetscValidRealPointer(cmb,12);
50679bc8a77SHong Zhang   if (rmb) PetscValidRealPointer(rmb,13);
50779bc8a77SHong Zhang   PetscValidRealPointer(Af,14);
50879bc8a77SHong Zhang   if (bf) PetscValidRealPointer(bf,15);
50979bc8a77SHong Zhang   if (cf) PetscValidRealPointer(cf,16);
5104b84eec9SHong Zhang 
5114b84eec9SHong Zhang   ierr = PetscNew(&link);CHKERRQ(ierr);
5124b84eec9SHong Zhang   t = &link->tab;
5134b84eec9SHong Zhang 
5144b84eec9SHong Zhang   ierr = PetscStrallocpy(name,&t->name);CHKERRQ(ierr);
51579bc8a77SHong Zhang   s = sbase*ratio1*ratio2; /*  this is the dimension of the matrices below */
5164b84eec9SHong Zhang   t->order = order;
51779bc8a77SHong Zhang   t->sbase = sbase;
5184b84eec9SHong Zhang   t->s  = s;
51919c2959aSHong Zhang   t->np = 2;
52079bc8a77SHong Zhang 
5214b84eec9SHong Zhang   ierr = PetscMalloc3(s*s,&t->Af,s,&t->bf,s,&t->cf);CHKERRQ(ierr);
5224b84eec9SHong Zhang   ierr = PetscMemcpy(t->Af,Af,s*s*sizeof(Af[0]));CHKERRQ(ierr);
5234b84eec9SHong Zhang   if (bf) {
5244b84eec9SHong Zhang     ierr = PetscMemcpy(t->bf,bf,s*sizeof(bf[0]));CHKERRQ(ierr);
52519c2959aSHong Zhang   } else
5264b84eec9SHong Zhang     for (i=0; i<s; i++) t->bf[i] = Af[(s-1)*s+i];
5274b84eec9SHong Zhang   if (cf) {
5284b84eec9SHong Zhang     ierr = PetscMemcpy(t->cf,cf,s*sizeof(cf[0]));CHKERRQ(ierr);
52919c2959aSHong Zhang   } else {
5304b84eec9SHong Zhang     for (i=0; i<s; i++)
5314b84eec9SHong Zhang       for (j=0,t->cf[i]=0; j<s; j++)
5324b84eec9SHong Zhang         t->cf[i] += Af[i*s+j];
5334b84eec9SHong Zhang   }
53419c2959aSHong Zhang 
53519c2959aSHong Zhang   if (Amb) {
53619c2959aSHong Zhang     t->np = 3;
53719c2959aSHong Zhang     ierr = PetscMalloc3(s*s,&t->Amb,s,&t->bmb,s,&t->cmb);CHKERRQ(ierr);
53819c2959aSHong Zhang     ierr = PetscCalloc1(s,&t->rmb);CHKERRQ(ierr);
53919c2959aSHong Zhang     ierr = PetscMemcpy(t->Amb,Amb,s*s*sizeof(Amb[0]));CHKERRQ(ierr);
54019c2959aSHong Zhang     if (bmb) {
54119c2959aSHong Zhang       ierr = PetscMemcpy(t->bmb,bmb,s*sizeof(bmb[0]));CHKERRQ(ierr);
54219c2959aSHong Zhang     } else {
54319c2959aSHong Zhang       for (i=0; i<s; i++) t->bmb[i] = Amb[(s-1)*s+i];
5444b84eec9SHong Zhang     }
54519c2959aSHong Zhang     if (cmb) {
54619c2959aSHong Zhang       ierr = PetscMemcpy(t->cmb,cmb,s*sizeof(cmb[0]));CHKERRQ(ierr);
54719c2959aSHong Zhang     } else {
5484b84eec9SHong Zhang       for (i=0; i<s; i++)
54919c2959aSHong Zhang         for (j=0,t->cmb[i]=0; j<s; j++)
55019c2959aSHong Zhang           t->cmb[i] += Amb[i*s+j];
55119c2959aSHong Zhang     }
55219c2959aSHong Zhang     if (rmb) {
55319c2959aSHong Zhang       ierr = PetscMemcpy(t->rmb,rmb,s*sizeof(rmb[0]));CHKERRQ(ierr);
55419c2959aSHong Zhang     }
55519c2959aSHong Zhang   }
55619c2959aSHong Zhang 
55719c2959aSHong Zhang   ierr = PetscMalloc3(s*s,&t->Asb,s,&t->bsb,s,&t->csb);CHKERRQ(ierr);
55819c2959aSHong Zhang   ierr = PetscMemcpy(t->Asb,Asb,s*s*sizeof(Asb[0]));CHKERRQ(ierr);
55919c2959aSHong Zhang   ierr = PetscCalloc1(s,&t->rsb);CHKERRQ(ierr);
56019c2959aSHong Zhang   if (bsb) {
56119c2959aSHong Zhang     ierr = PetscMemcpy(t->bsb,bsb,s*sizeof(bsb[0]));CHKERRQ(ierr);
56219c2959aSHong Zhang   } else
56319c2959aSHong Zhang     for (i=0; i<s; i++) t->bsb[i] = Asb[(s-1)*s+i];
56419c2959aSHong Zhang   if (csb) {
56519c2959aSHong Zhang     ierr = PetscMemcpy(t->csb,csb,s*sizeof(csb[0]));CHKERRQ(ierr);
56619c2959aSHong Zhang   } else {
56719c2959aSHong Zhang     for (i=0; i<s; i++)
56819c2959aSHong Zhang       for (j=0,t->csb[i]=0; j<s; j++)
56919c2959aSHong Zhang         t->csb[i] += Asb[i*s+j];
57019c2959aSHong Zhang   }
57119c2959aSHong Zhang   if (rsb) {
57219c2959aSHong Zhang     ierr = PetscMemcpy(t->rsb,rsb,s*sizeof(rsb[0]));CHKERRQ(ierr);
5734b84eec9SHong Zhang   }
5744b84eec9SHong Zhang   link->next = MPRKTableauList;
5754b84eec9SHong Zhang   MPRKTableauList = link;
5764b84eec9SHong Zhang   PetscFunctionReturn(0);
5774b84eec9SHong Zhang }
5784b84eec9SHong Zhang 
5794b84eec9SHong Zhang static PetscErrorCode TSMPRKSetSplits(TS ts)
5804b84eec9SHong Zhang {
5814b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
58219c2959aSHong Zhang   MPRKTableau    tab = mprk->tableau;
5834b84eec9SHong Zhang   DM             dm,subdm,newdm;
5844b84eec9SHong Zhang   PetscErrorCode ierr;
5854b84eec9SHong Zhang 
5864b84eec9SHong Zhang   PetscFunctionBegin;
5874b84eec9SHong Zhang   ierr = TSRHSSplitGetSubTS(ts,"slow",&mprk->subts_slow);CHKERRQ(ierr);
5884b84eec9SHong Zhang   ierr = TSRHSSplitGetSubTS(ts,"fast",&mprk->subts_fast);CHKERRQ(ierr);
5894b84eec9SHong Zhang   if (!mprk->subts_slow || !mprk->subts_fast) SETERRQ(PetscObjectComm((PetscObject)ts),PETSC_ERR_USER,"Must set up the RHSFunctions for 'slow' and 'fast' components using TSRHSSplitSetRHSFunction() or calling TSSetRHSFunction() for each sub-TS");
5904b84eec9SHong Zhang 
59119c2959aSHong Zhang   /* Only copy the DM */
5924b84eec9SHong Zhang   ierr = TSGetDM(ts,&dm);CHKERRQ(ierr);
59319c2959aSHong Zhang 
59419c2959aSHong Zhang   ierr = TSRHSSplitGetSubTS(ts,"slowbuffer",&mprk->subts_slowbuffer);CHKERRQ(ierr);
59519c2959aSHong Zhang   if (!mprk->subts_slowbuffer) {
59619c2959aSHong Zhang     mprk->subts_slowbuffer = mprk->subts_slow;
59719c2959aSHong Zhang     mprk->subts_slow       = NULL;
59819c2959aSHong Zhang   }
59919c2959aSHong Zhang   if (mprk->subts_slow) {
6004b84eec9SHong Zhang     ierr = DMClone(dm,&newdm);CHKERRQ(ierr);
6014b84eec9SHong Zhang     ierr = TSGetDM(mprk->subts_slow,&subdm);CHKERRQ(ierr);
6024b84eec9SHong Zhang     ierr = DMCopyDMTS(subdm,newdm);CHKERRQ(ierr);
6034b84eec9SHong Zhang     ierr = DMCopyDMSNES(subdm,newdm);CHKERRQ(ierr);
6044b84eec9SHong Zhang     ierr = TSSetDM(mprk->subts_slow,newdm);CHKERRQ(ierr);
6054b84eec9SHong Zhang     ierr = DMDestroy(&newdm);CHKERRQ(ierr);
60619c2959aSHong Zhang   }
60719c2959aSHong Zhang   ierr = DMClone(dm,&newdm);CHKERRQ(ierr);
60819c2959aSHong Zhang   ierr = TSGetDM(mprk->subts_slowbuffer,&subdm);CHKERRQ(ierr);
60919c2959aSHong Zhang   ierr = DMCopyDMTS(subdm,newdm);CHKERRQ(ierr);
61019c2959aSHong Zhang   ierr = DMCopyDMSNES(subdm,newdm);CHKERRQ(ierr);
61119c2959aSHong Zhang   ierr = TSSetDM(mprk->subts_slowbuffer,newdm);CHKERRQ(ierr);
61219c2959aSHong Zhang   ierr = DMDestroy(&newdm);CHKERRQ(ierr);
61319c2959aSHong Zhang 
61419c2959aSHong Zhang   ierr = DMClone(dm,&newdm);CHKERRQ(ierr);
61519c2959aSHong Zhang   ierr = TSGetDM(mprk->subts_fast,&subdm);CHKERRQ(ierr);
61619c2959aSHong Zhang   ierr = DMCopyDMTS(subdm,newdm);CHKERRQ(ierr);
61719c2959aSHong Zhang   ierr = DMCopyDMSNES(subdm,newdm);CHKERRQ(ierr);
61819c2959aSHong Zhang   ierr = TSSetDM(mprk->subts_fast,newdm);CHKERRQ(ierr);
61919c2959aSHong Zhang   ierr = DMDestroy(&newdm);CHKERRQ(ierr);
62019c2959aSHong Zhang 
62119c2959aSHong Zhang   if (tab->np == 3) {
62219c2959aSHong Zhang     ierr = TSRHSSplitGetSubTS(ts,"medium",&mprk->subts_medium);CHKERRQ(ierr);
62319c2959aSHong Zhang     ierr = TSRHSSplitGetSubTS(ts,"mediumbuffer",&mprk->subts_mediumbuffer);CHKERRQ(ierr);
62419c2959aSHong Zhang     if (mprk->subts_medium && !mprk->subts_mediumbuffer) {
62519c2959aSHong Zhang       mprk->subts_mediumbuffer = mprk->subts_medium;
62619c2959aSHong Zhang       mprk->subts_medium       = NULL;
62719c2959aSHong Zhang     }
62819c2959aSHong Zhang     if (mprk->subts_medium) {
62919c2959aSHong Zhang       ierr = DMClone(dm,&newdm);CHKERRQ(ierr);
63019c2959aSHong Zhang       ierr = TSGetDM(mprk->subts_medium,&subdm);CHKERRQ(ierr);
63119c2959aSHong Zhang       ierr = DMCopyDMTS(subdm,newdm);CHKERRQ(ierr);
63219c2959aSHong Zhang       ierr = DMCopyDMSNES(subdm,newdm);CHKERRQ(ierr);
63319c2959aSHong Zhang       ierr = TSSetDM(mprk->subts_medium,newdm);CHKERRQ(ierr);
63419c2959aSHong Zhang       ierr = DMDestroy(&newdm);CHKERRQ(ierr);
63519c2959aSHong Zhang     }
63619c2959aSHong Zhang     ierr = DMClone(dm,&newdm);CHKERRQ(ierr);
63719c2959aSHong Zhang     ierr = TSGetDM(mprk->subts_mediumbuffer,&subdm);CHKERRQ(ierr);
63819c2959aSHong Zhang     ierr = DMCopyDMTS(subdm,newdm);CHKERRQ(ierr);
63919c2959aSHong Zhang     ierr = DMCopyDMSNES(subdm,newdm);CHKERRQ(ierr);
64019c2959aSHong Zhang     ierr = TSSetDM(mprk->subts_mediumbuffer,newdm);CHKERRQ(ierr);
64119c2959aSHong Zhang     ierr = DMDestroy(&newdm);CHKERRQ(ierr);
64219c2959aSHong Zhang   }
6434b84eec9SHong Zhang   PetscFunctionReturn(0);
6444b84eec9SHong Zhang }
6454b84eec9SHong Zhang 
6464b84eec9SHong Zhang /*
6474b84eec9SHong Zhang  This if for nonsplit RHS MPRK
6484b84eec9SHong Zhang  The step completion formula is
6494b84eec9SHong Zhang 
6504b84eec9SHong Zhang  x1 = x0 + h b^T YdotRHS
6514b84eec9SHong Zhang 
6524b84eec9SHong Zhang */
6534b84eec9SHong Zhang static PetscErrorCode TSEvaluateStep_MPRK(TS ts,PetscInt order,Vec X,PetscBool *done)
6544b84eec9SHong Zhang {
6554b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
6564b84eec9SHong Zhang   MPRKTableau    tab = mprk->tableau;
6577c0df07dSHong Zhang   PetscScalar    *wf = mprk->work_fast;
6584b84eec9SHong Zhang   PetscReal      h = ts->time_step;
6594b84eec9SHong Zhang   PetscInt       s = tab->s,j;
6604b84eec9SHong Zhang   PetscErrorCode ierr;
6614b84eec9SHong Zhang 
6624b84eec9SHong Zhang   PetscFunctionBegin;
6634b84eec9SHong Zhang   for (j=0; j<s; j++) wf[j] = h*tab->bf[j];
6647c0df07dSHong Zhang   ierr = VecCopy(ts->vec_sol,X);CHKERRQ(ierr);
6657c0df07dSHong Zhang   ierr = VecMAXPY(X,s,wf,mprk->YdotRHS);CHKERRQ(ierr);
6664b84eec9SHong Zhang   PetscFunctionReturn(0);
6674b84eec9SHong Zhang }
6684b84eec9SHong Zhang 
6694b84eec9SHong Zhang static PetscErrorCode TSStep_MPRK(TS ts)
6704b84eec9SHong Zhang {
6714b84eec9SHong Zhang   TS_MPRK         *mprk = (TS_MPRK*)ts->data;
6727c0df07dSHong Zhang   Vec             *Y = mprk->Y,*YdotRHS = mprk->YdotRHS,*YdotRHS_fast = mprk->YdotRHS_fast,*YdotRHS_slow = mprk->YdotRHS_slow,*YdotRHS_slowbuffer = mprk->YdotRHS_slowbuffer;
6737c0df07dSHong Zhang   Vec             Yslow,Yslowbuffer,Yfast;
6744b84eec9SHong Zhang   MPRKTableau     tab = mprk->tableau;
6754b84eec9SHong Zhang   const PetscInt  s = tab->s;
67619c2959aSHong Zhang   const PetscReal *Af = tab->Af,*cf = tab->cf,*Asb = tab->Asb,*csb = tab->csb;
677ebd5ed4eSHong Zhang   PetscScalar     *wf = mprk->work_fast,*wsb = mprk->work_slowbuffer;
678ebd5ed4eSHong Zhang   PetscInt        i,j;
6794b84eec9SHong Zhang   PetscReal       next_time_step = ts->time_step,t = ts->ptime,h = ts->time_step;
6804b84eec9SHong Zhang   PetscErrorCode  ierr;
6814b84eec9SHong Zhang 
6824b84eec9SHong Zhang   PetscFunctionBegin;
6834b84eec9SHong Zhang   for (i=0; i<s; i++) {
6844b84eec9SHong Zhang     mprk->stage_time = t + h*cf[i];
6854b84eec9SHong Zhang     ierr = TSPreStage(ts,mprk->stage_time);CHKERRQ(ierr);
6867c0df07dSHong Zhang     ierr = VecCopy(ts->vec_sol,Y[i]);CHKERRQ(ierr);
6874b84eec9SHong Zhang 
6887c0df07dSHong Zhang     /* slow buffer region */
68919c2959aSHong Zhang     for (j=0; j<i; j++) wsb[j] = h*Asb[i*s+j];
6909849be05SHong Zhang     for (j=0; j<i; j++) {
6917c0df07dSHong Zhang       ierr = VecGetSubVector(YdotRHS[j],mprk->is_slowbuffer,&YdotRHS_slowbuffer[j]);CHKERRQ(ierr);
6927c0df07dSHong Zhang     }
6937c0df07dSHong Zhang     ierr = VecGetSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
6947c0df07dSHong Zhang     ierr = VecMAXPY(Yslowbuffer,i,wsb,mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
6957c0df07dSHong Zhang     ierr = VecRestoreSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
6969849be05SHong Zhang     for (j=0; j<i; j++) {
6977c0df07dSHong Zhang       ierr = VecRestoreSubVector(YdotRHS[j],mprk->is_slowbuffer,&YdotRHS_slowbuffer[j]);CHKERRQ(ierr);
6987c0df07dSHong Zhang     }
6997c0df07dSHong Zhang     /* slow region */
7007c0df07dSHong Zhang     if (mprk->is_slow) {
7019849be05SHong Zhang       for (j=0; j<i; j++) {
7027c0df07dSHong Zhang         ierr = VecGetSubVector(YdotRHS[j],mprk->is_slow,&YdotRHS_slow[j]);CHKERRQ(ierr);
7037c0df07dSHong Zhang       }
7047c0df07dSHong Zhang       ierr = VecGetSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
705ebd5ed4eSHong Zhang       ierr = VecMAXPY(Yslow,i,wsb,mprk->YdotRHS_slow);CHKERRQ(ierr);
7067c0df07dSHong Zhang       ierr = VecRestoreSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
707ebd5ed4eSHong Zhang       for (j=0; j<i; j++) {
7087c0df07dSHong Zhang         ierr = VecRestoreSubVector(YdotRHS[j],mprk->is_slow,&YdotRHS_slow[j]);CHKERRQ(ierr);
7097c0df07dSHong Zhang       }
7107c0df07dSHong Zhang     }
7114b84eec9SHong Zhang 
7127c0df07dSHong Zhang     /* fast region */
7134b84eec9SHong Zhang     for (j=0; j<i; j++) wf[j] = h*Af[i*s+j];
7149849be05SHong Zhang     for (j=0; j<i; j++) {
7157c0df07dSHong Zhang       ierr = VecGetSubVector(YdotRHS[j],mprk->is_fast,&YdotRHS_fast[j]);CHKERRQ(ierr);
7167c0df07dSHong Zhang     }
7177c0df07dSHong Zhang     ierr = VecGetSubVector(Y[i],mprk->is_fast,&Yfast);CHKERRQ(ierr);
7187c0df07dSHong Zhang     ierr = VecMAXPY(Yfast,i,wf,mprk->YdotRHS_fast);CHKERRQ(ierr);
7197c0df07dSHong Zhang     ierr = VecRestoreSubVector(Y[i],mprk->is_fast,&Yfast);CHKERRQ(ierr);
7209849be05SHong Zhang     for (j=0; j<i; j++) {
7217c0df07dSHong Zhang       ierr = VecRestoreSubVector(YdotRHS[j],mprk->is_fast,&YdotRHS_fast[j]);CHKERRQ(ierr);
7227c0df07dSHong Zhang     }
7237c0df07dSHong Zhang     if (tab->np == 3) {
7247c0df07dSHong Zhang       Vec         *YdotRHS_medium = mprk->YdotRHS_medium,*YdotRHS_mediumbuffer = mprk->YdotRHS_mediumbuffer;
7257c0df07dSHong Zhang       Vec         Ymedium,Ymediumbuffer;
726ebd5ed4eSHong Zhang       PetscScalar *wmb = mprk->work_mediumbuffer;
727ebd5ed4eSHong Zhang 
728ebd5ed4eSHong Zhang       for (j=0; j<i; j++) wmb[j] = h*tab->Amb[i*s+j];
7297c0df07dSHong Zhang       /* medium region */
7307c0df07dSHong Zhang       if (mprk->is_medium) {
7317c0df07dSHong Zhang         for (j=0; j<i; j++) {
7327c0df07dSHong Zhang           ierr = VecGetSubVector(YdotRHS[j],mprk->is_medium,&YdotRHS_medium[j]);CHKERRQ(ierr);
7337c0df07dSHong Zhang         }
7347c0df07dSHong Zhang         ierr = VecGetSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
735ebd5ed4eSHong Zhang         ierr = VecMAXPY(Ymedium,i,wmb,mprk->YdotRHS_medium);CHKERRQ(ierr);
7367c0df07dSHong Zhang         ierr = VecRestoreSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
737ebd5ed4eSHong Zhang         for (j=0; j<i; j++) {
7387c0df07dSHong Zhang           ierr = VecRestoreSubVector(YdotRHS[j],mprk->is_medium,&YdotRHS_medium[j]);CHKERRQ(ierr);
7397c0df07dSHong Zhang         }
7407c0df07dSHong Zhang       }
7417c0df07dSHong Zhang       /* medium buffer region */
7429849be05SHong Zhang       for (j=0; j<i; j++) {
7437c0df07dSHong Zhang         ierr = VecGetSubVector(YdotRHS[j],mprk->is_mediumbuffer,&YdotRHS_mediumbuffer[j]);CHKERRQ(ierr);
7447c0df07dSHong Zhang       }
7457c0df07dSHong Zhang       ierr = VecGetSubVector(Y[i],mprk->is_mediumbuffer,&Ymediumbuffer);CHKERRQ(ierr);
7467c0df07dSHong Zhang       ierr = VecMAXPY(Ymediumbuffer,i,wmb,mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
7477c0df07dSHong Zhang       ierr = VecRestoreSubVector(Y[i],mprk->is_mediumbuffer,&Ymediumbuffer);CHKERRQ(ierr);
7489849be05SHong Zhang       for (j=0; j<i; j++) {
7497c0df07dSHong Zhang         ierr = VecRestoreSubVector(YdotRHS[j],mprk->is_mediumbuffer,&YdotRHS_mediumbuffer[j]);CHKERRQ(ierr);
7507c0df07dSHong Zhang       }
7517c0df07dSHong Zhang     }
7524b84eec9SHong Zhang     ierr = TSPostStage(ts,mprk->stage_time,i,Y); CHKERRQ(ierr);
7534b84eec9SHong Zhang     /* compute the stage RHS by fast and slow tableau respectively */
7547c0df07dSHong Zhang     ierr = TSComputeRHSFunction(ts,t+h*csb[i],Y[i],YdotRHS[i]);CHKERRQ(ierr);
7554b84eec9SHong Zhang   }
7564b84eec9SHong Zhang   ierr = TSEvaluateStep(ts,tab->order,ts->vec_sol,NULL);CHKERRQ(ierr);
7574b84eec9SHong Zhang   ts->ptime += ts->time_step;
7584b84eec9SHong Zhang   ts->time_step = next_time_step;
7594b84eec9SHong Zhang   PetscFunctionReturn(0);
7604b84eec9SHong Zhang }
7614b84eec9SHong Zhang 
7624b84eec9SHong Zhang /*
763f944a40eSHong Zhang  This if for the case when split RHS is used
7644b84eec9SHong Zhang  The step completion formula is
7654b84eec9SHong Zhang  x1 = x0 + h b^T YdotRHS
7664b84eec9SHong Zhang */
7674b84eec9SHong Zhang static PetscErrorCode TSEvaluateStep_MPRKSPLIT(TS ts,PetscInt order,Vec X,PetscBool *done)
7684b84eec9SHong Zhang {
7694b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
7704b84eec9SHong Zhang   MPRKTableau    tab  = mprk->tableau;
77119c2959aSHong Zhang   Vec            Xslow,Xfast,Xslowbuffer; /* subvectors for slow and fast componets in X respectively */
77219c2959aSHong Zhang   PetscScalar    *wf = mprk->work_fast,*ws = mprk->work_slow,*wsb = mprk->work_slowbuffer;
7734b84eec9SHong Zhang   PetscReal      h = ts->time_step;
77479bc8a77SHong Zhang   PetscInt       s = tab->s,j,computedstages;
7754b84eec9SHong Zhang   PetscErrorCode ierr;
7764b84eec9SHong Zhang 
7774b84eec9SHong Zhang   PetscFunctionBegin;
7784b84eec9SHong Zhang   ierr = VecCopy(ts->vec_sol,X);CHKERRQ(ierr);
77919c2959aSHong Zhang 
78019c2959aSHong Zhang   /* slow region */
78119c2959aSHong Zhang   if (mprk->is_slow) {
78279bc8a77SHong Zhang     computedstages = 0;
78319c2959aSHong Zhang     for (j=0; j<s; j++) {
7849849be05SHong Zhang       if (tab->rsb[j]) ws[tab->rsb[j]-1] += h*tab->bsb[j];
78579bc8a77SHong Zhang       else ws[computedstages++] = h*tab->bsb[j];
78619c2959aSHong Zhang     }
7874b84eec9SHong Zhang     ierr = VecGetSubVector(X,mprk->is_slow,&Xslow);CHKERRQ(ierr);
78879bc8a77SHong Zhang     ierr = VecMAXPY(Xslow,computedstages,ws,mprk->YdotRHS_slow);CHKERRQ(ierr);
78919c2959aSHong Zhang     ierr = VecRestoreSubVector(X,mprk->is_slow,&Xslow);CHKERRQ(ierr);
79019c2959aSHong Zhang   }
79119c2959aSHong Zhang 
7929d6e09e9SHong Zhang   if (tab->np == 3 && mprk->is_medium) {
7939d6e09e9SHong Zhang     computedstages = 0;
7949d6e09e9SHong Zhang     for (j=0; j<s; j++) {
7959d6e09e9SHong Zhang       if (tab->rmb[j]) wsb[computedstages-tab->sbase+(tab->rmb[j]-1)%tab->sbase] += h*tab->bsb[j];
7969d6e09e9SHong Zhang       else wsb[computedstages++] = h*tab->bsb[j];
7979d6e09e9SHong Zhang     }
7989d6e09e9SHong Zhang     ierr = VecGetSubVector(X,mprk->is_slowbuffer,&Xslowbuffer);CHKERRQ(ierr);
7999d6e09e9SHong Zhang     ierr = VecMAXPY(Xslowbuffer,computedstages,wsb,mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
8009d6e09e9SHong Zhang     ierr = VecRestoreSubVector(X,mprk->is_slowbuffer,&Xslowbuffer);CHKERRQ(ierr);
8019d6e09e9SHong Zhang   } else {
80219c2959aSHong Zhang     /* slow buffer region */
80319c2959aSHong Zhang     for (j=0; j<s; j++) wsb[j] = h*tab->bsb[j];
80419c2959aSHong Zhang     ierr = VecGetSubVector(X,mprk->is_slowbuffer,&Xslowbuffer);CHKERRQ(ierr);
80519c2959aSHong Zhang     ierr = VecMAXPY(Xslowbuffer,s,wsb,mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
80619c2959aSHong Zhang     ierr = VecRestoreSubVector(X,mprk->is_slowbuffer,&Xslowbuffer);CHKERRQ(ierr);
8079d6e09e9SHong Zhang   }
80819c2959aSHong Zhang   if (tab->np == 3) {
80919c2959aSHong Zhang     Vec         Xmedium,Xmediumbuffer;
81019c2959aSHong Zhang     PetscScalar *wm = mprk->work_medium,*wmb = mprk->work_mediumbuffer;
8119d6e09e9SHong Zhang     /* medium region and slow buffer region */
81219c2959aSHong Zhang     if (mprk->is_medium) {
81379bc8a77SHong Zhang       computedstages = 0;
81419c2959aSHong Zhang       for (j=0; j<s; j++) {
81579bc8a77SHong Zhang         if (tab->rmb[j]) wm[computedstages-tab->sbase+(tab->rmb[j]-1)%tab->sbase] += h*tab->bmb[j];
81679bc8a77SHong Zhang         else wm[computedstages++] = h*tab->bmb[j];
81719c2959aSHong Zhang       }
81819c2959aSHong Zhang       ierr = VecGetSubVector(X,mprk->is_medium,&Xmedium);CHKERRQ(ierr);
81979bc8a77SHong Zhang       ierr = VecMAXPY(Xmedium,computedstages,wm,mprk->YdotRHS_medium);CHKERRQ(ierr);
82019c2959aSHong Zhang       ierr = VecRestoreSubVector(X,mprk->is_medium,&Xmedium);CHKERRQ(ierr);
82119c2959aSHong Zhang     }
82219c2959aSHong Zhang     /* medium buffer region */
82319c2959aSHong Zhang     for (j=0; j<s; j++) wmb[j] = h*tab->bmb[j];
82419c2959aSHong Zhang     ierr = VecGetSubVector(X,mprk->is_mediumbuffer,&Xmediumbuffer);CHKERRQ(ierr);
82519c2959aSHong Zhang     ierr = VecMAXPY(Xmediumbuffer,s,wmb,mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
82619c2959aSHong Zhang     ierr = VecRestoreSubVector(X,mprk->is_mediumbuffer,&Xmediumbuffer);CHKERRQ(ierr);
82719c2959aSHong Zhang   }
82819c2959aSHong Zhang   /* fast region */
82919c2959aSHong Zhang   for (j=0; j<s; j++) wf[j] = h*tab->bf[j];
8304b84eec9SHong Zhang   ierr = VecGetSubVector(X,mprk->is_fast,&Xfast);CHKERRQ(ierr);
8314b84eec9SHong Zhang   ierr = VecMAXPY(Xfast,s,wf,mprk->YdotRHS_fast);CHKERRQ(ierr);
83219c2959aSHong Zhang   ierr = VecRestoreSubVector(X,mprk->is_fast,&Xfast);CHKERRQ(ierr);
8334b84eec9SHong Zhang   PetscFunctionReturn(0);
8344b84eec9SHong Zhang }
8354b84eec9SHong Zhang 
8364b84eec9SHong Zhang static PetscErrorCode TSStep_MPRKSPLIT(TS ts)
8374b84eec9SHong Zhang {
8384b84eec9SHong Zhang   TS_MPRK         *mprk = (TS_MPRK*)ts->data;
8394b84eec9SHong Zhang   MPRKTableau     tab = mprk->tableau;
84019c2959aSHong Zhang   Vec             *Y = mprk->Y,*YdotRHS_fast = mprk->YdotRHS_fast,*YdotRHS_slow = mprk->YdotRHS_slow,*YdotRHS_slowbuffer = mprk->YdotRHS_slowbuffer;
84119c2959aSHong Zhang   Vec             Yslow,Yslowbuffer,Yfast; /* subvectors for slow and fast components in Y[i] respectively */
84219c2959aSHong Zhang   PetscInt        s = tab->s;
84319c2959aSHong Zhang   const PetscReal *Af = tab->Af,*cf = tab->cf,*Asb = tab->Asb,*csb = tab->csb;
84419c2959aSHong Zhang   PetscScalar     *wf = mprk->work_fast,*ws = mprk->work_slow,*wsb = mprk->work_slowbuffer;
84579bc8a77SHong Zhang   PetscInt        i,j,computedstages;
8464b84eec9SHong Zhang   PetscReal       next_time_step = ts->time_step,t = ts->ptime,h = ts->time_step;
8474b84eec9SHong Zhang   PetscErrorCode  ierr;
8484b84eec9SHong Zhang 
8494b84eec9SHong Zhang   PetscFunctionBegin;
8504b84eec9SHong Zhang   for (i=0; i<s; i++) {
8514b84eec9SHong Zhang     mprk->stage_time = t + h*cf[i];
8524b84eec9SHong Zhang     ierr = TSPreStage(ts,mprk->stage_time);CHKERRQ(ierr);
8534b84eec9SHong Zhang     /* calculate the stage value for fast and slow components respectively */
8544b84eec9SHong Zhang     ierr = VecCopy(ts->vec_sol,Y[i]);CHKERRQ(ierr);
85519c2959aSHong Zhang     for (j=0; j<i; j++) wsb[j] = h*Asb[i*s+j];
85619c2959aSHong Zhang 
85719c2959aSHong Zhang     /* slow buffer region */
8589d6e09e9SHong Zhang     if (tab->np == 3 && mprk->is_medium) {
8599d6e09e9SHong Zhang       if (tab->rmb[i]) {
8609d6e09e9SHong Zhang         ierr = VecGetSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
8619d6e09e9SHong Zhang         ierr = VecISCopy(Y[tab->rmb[i]-1],mprk->is_slowbuffer,SCATTER_REVERSE,Yslowbuffer);CHKERRQ(ierr);
8629d6e09e9SHong Zhang         ierr = VecRestoreSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
8639d6e09e9SHong Zhang       } else {
8649d6e09e9SHong Zhang         PetscScalar *wm = mprk->work_medium;
8659d6e09e9SHong Zhang         computedstages = 0;
8669d6e09e9SHong Zhang         for (j=0; j<i; j++) {
8679d6e09e9SHong Zhang           if (tab->rmb[j]) wm[computedstages-tab->sbase+(tab->rmb[j]-1)%tab->sbase] += wsb[j];
8689d6e09e9SHong Zhang           else wm[computedstages++] = wsb[j];
8699d6e09e9SHong Zhang         }
8709d6e09e9SHong Zhang         ierr = VecGetSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
8719d6e09e9SHong Zhang         ierr = VecMAXPY(Yslowbuffer,computedstages,wm,YdotRHS_slowbuffer);CHKERRQ(ierr);
8729d6e09e9SHong Zhang         ierr = VecRestoreSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
8739d6e09e9SHong Zhang       }
8749d6e09e9SHong Zhang     } else {
87519c2959aSHong Zhang       ierr = VecGetSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
87619c2959aSHong Zhang       ierr = VecMAXPY(Yslowbuffer,i,wsb,YdotRHS_slowbuffer);CHKERRQ(ierr);
87719c2959aSHong Zhang       ierr = VecRestoreSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
8789d6e09e9SHong Zhang     }
8799849be05SHong Zhang 
88019c2959aSHong Zhang     /* slow region */
8819849be05SHong Zhang     if (mprk->is_slow) {
8829849be05SHong Zhang       if (tab->rsb[i]) { /* repeat previous stage */
8839849be05SHong Zhang         ierr = VecGetSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
8849849be05SHong Zhang         ierr = VecISCopy(Y[tab->rsb[i]-1],mprk->is_slow,SCATTER_REVERSE,Yslow);CHKERRQ(ierr);
8859849be05SHong Zhang         ierr = VecRestoreSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
8869849be05SHong Zhang       } else {
88779bc8a77SHong Zhang         computedstages = 0;
88819c2959aSHong Zhang         for (j=0; j<i; j++) {
88979bc8a77SHong Zhang           if (tab->rsb[j]) ws[tab->rsb[j]-1] += wsb[j];
89079bc8a77SHong Zhang           else ws[computedstages++] = wsb[j];
89119c2959aSHong Zhang         }
8924b84eec9SHong Zhang         ierr = VecGetSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
89379bc8a77SHong Zhang         ierr = VecMAXPY(Yslow,computedstages,ws,YdotRHS_slow);CHKERRQ(ierr);
8944b84eec9SHong Zhang         ierr = VecRestoreSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
89519c2959aSHong Zhang         /* only depends on the slow buffer region */
89679bc8a77SHong Zhang         ierr = TSComputeRHSFunction(mprk->subts_slow,t+h*csb[i],Y[i],YdotRHS_slow[computedstages]);CHKERRQ(ierr);
89719c2959aSHong Zhang       }
8989849be05SHong Zhang     }
89919c2959aSHong Zhang 
90019c2959aSHong Zhang     /* fast region */
90119c2959aSHong Zhang     for (j=0; j<i; j++) wf[j] = h*Af[i*s+j];
90219c2959aSHong Zhang     ierr = VecGetSubVector(Y[i],mprk->is_fast,&Yfast);CHKERRQ(ierr);
90319c2959aSHong Zhang     ierr = VecMAXPY(Yfast,i,wf,YdotRHS_fast);CHKERRQ(ierr);
9044b84eec9SHong Zhang     ierr = VecRestoreSubVector(Y[i],mprk->is_fast,&Yfast);CHKERRQ(ierr);
90519c2959aSHong Zhang 
90619c2959aSHong Zhang     if (tab->np == 3) {
90719c2959aSHong Zhang       Vec *YdotRHS_medium = mprk->YdotRHS_medium,*YdotRHS_mediumbuffer = mprk->YdotRHS_mediumbuffer;
90819c2959aSHong Zhang       Vec Ymedium,Ymediumbuffer;
90919c2959aSHong Zhang       const PetscReal *Amb = tab->Amb,*cmb = tab->cmb;
91019c2959aSHong Zhang       PetscScalar *wm = mprk->work_medium,*wmb = mprk->work_mediumbuffer;
91119c2959aSHong Zhang 
91219c2959aSHong Zhang       for (j=0; j<i; j++) wmb[j] = h*Amb[i*s+j];
91319c2959aSHong Zhang       /* medium buffer region */
91419c2959aSHong Zhang       ierr = VecGetSubVector(Y[i],mprk->is_mediumbuffer,&Ymediumbuffer);CHKERRQ(ierr);
91519c2959aSHong Zhang       ierr = VecMAXPY(Ymediumbuffer,i,wmb,YdotRHS_mediumbuffer);CHKERRQ(ierr);
91619c2959aSHong Zhang       ierr = VecRestoreSubVector(Y[i],mprk->is_mediumbuffer,&Ymediumbuffer);CHKERRQ(ierr);
91719c2959aSHong Zhang       /* medium region */
91879bc8a77SHong Zhang       if (mprk->is_medium) {
91979bc8a77SHong Zhang         if (tab->rmb[i]) { /* repeat previous stage */
92079bc8a77SHong Zhang           ierr = VecGetSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
92179bc8a77SHong Zhang           ierr = VecISCopy(Y[tab->rmb[i]-1],mprk->is_medium,SCATTER_REVERSE,Ymedium);CHKERRQ(ierr);
92219c2959aSHong Zhang           ierr = VecRestoreSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
92379bc8a77SHong Zhang         } else {
92479bc8a77SHong Zhang           computedstages = 0;
92579bc8a77SHong Zhang           for (j=0; j<i; j++) {
92679bc8a77SHong Zhang             if (tab->rmb[j]) wm[computedstages-tab->sbase+(tab->rmb[j]-1)%tab->sbase] += wmb[j];
92779bc8a77SHong Zhang             else wm[computedstages++] = wmb[j];
92879bc8a77SHong Zhang 
92979bc8a77SHong Zhang           }
93079bc8a77SHong Zhang           ierr = VecGetSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
93179bc8a77SHong Zhang           ierr = VecMAXPY(Ymedium,computedstages,wm,YdotRHS_medium);CHKERRQ(ierr);
93279bc8a77SHong Zhang           ierr = VecRestoreSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
93379bc8a77SHong Zhang           /* only depends on the medium buffer region */
93479bc8a77SHong Zhang           ierr = TSComputeRHSFunction(mprk->subts_medium,t+h*cmb[i],Y[i],YdotRHS_medium[computedstages]);CHKERRQ(ierr);
9359d6e09e9SHong Zhang           /* must be computed after all regions are updated in Y */
9369d6e09e9SHong Zhang           ierr = TSComputeRHSFunction(mprk->subts_slowbuffer,t+h*csb[i],Y[i],YdotRHS_slowbuffer[computedstages]);CHKERRQ(ierr);
93779bc8a77SHong Zhang         }
93819c2959aSHong Zhang       }
93919c2959aSHong Zhang       /* must be computed after fast region and slow region are updated in Y */
94019c2959aSHong Zhang       ierr = TSComputeRHSFunction(mprk->subts_mediumbuffer,t+h*cmb[i],Y[i],YdotRHS_mediumbuffer[i]);CHKERRQ(ierr);
94119c2959aSHong Zhang     }
9429d6e09e9SHong Zhang     if (!(tab->np == 3 && mprk->is_medium)) {
94319c2959aSHong Zhang       ierr = TSComputeRHSFunction(mprk->subts_slowbuffer,t+h*csb[i],Y[i],YdotRHS_slowbuffer[i]);CHKERRQ(ierr);
9449d6e09e9SHong Zhang     }
945bf0cca7dSHong Zhang     ierr = TSComputeRHSFunction(mprk->subts_fast,t+h*cf[i],Y[i],YdotRHS_fast[i]);CHKERRQ(ierr);
9464b84eec9SHong Zhang   }
94779bc8a77SHong Zhang 
9484b84eec9SHong Zhang   ierr = TSEvaluateStep(ts,tab->order,ts->vec_sol,NULL);CHKERRQ(ierr);
9494b84eec9SHong Zhang   ts->ptime += ts->time_step;
9504b84eec9SHong Zhang   ts->time_step = next_time_step;
9514b84eec9SHong Zhang   PetscFunctionReturn(0);
9524b84eec9SHong Zhang }
9534b84eec9SHong Zhang 
9544b84eec9SHong Zhang static PetscErrorCode TSMPRKTableauReset(TS ts)
9554b84eec9SHong Zhang {
9564b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
9574b84eec9SHong Zhang   MPRKTableau    tab = mprk->tableau;
9584b84eec9SHong Zhang   PetscErrorCode ierr;
9594b84eec9SHong Zhang 
9604b84eec9SHong Zhang   PetscFunctionBegin;
9614b84eec9SHong Zhang   if (!tab) PetscFunctionReturn(0);
9624b84eec9SHong Zhang   ierr = PetscFree(mprk->work_fast);CHKERRQ(ierr);
9634b84eec9SHong Zhang   ierr = PetscFree(mprk->work_slow);CHKERRQ(ierr);
9647c0df07dSHong Zhang   ierr = PetscFree(mprk->work_slowbuffer);CHKERRQ(ierr);
9657c0df07dSHong Zhang   ierr = PetscFree(mprk->work_medium);CHKERRQ(ierr);
9667c0df07dSHong Zhang   ierr = PetscFree(mprk->work_mediumbuffer);CHKERRQ(ierr);
9674b84eec9SHong Zhang   ierr = VecDestroyVecs(tab->s,&mprk->Y);CHKERRQ(ierr);
9680fe4d17eSHong Zhang   if (ts->use_splitrhsfunction) {
9690fe4d17eSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS_fast);CHKERRQ(ierr);
9700fe4d17eSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS_slow);CHKERRQ(ierr);
9710fe4d17eSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
9720fe4d17eSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS_medium);CHKERRQ(ierr);
9730fe4d17eSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
9740fe4d17eSHong Zhang   } else {
9757c0df07dSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS);CHKERRQ(ierr);
9767c0df07dSHong Zhang     if (mprk->is_slow) {
9777c0df07dSHong Zhang       ierr = PetscFree(mprk->YdotRHS_slow);CHKERRQ(ierr);
9784b84eec9SHong Zhang     }
9797c0df07dSHong Zhang     ierr = PetscFree(mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
9807c0df07dSHong Zhang     if (tab->np == 3) {
9817c0df07dSHong Zhang       if (mprk->is_medium) {
9827c0df07dSHong Zhang         ierr = PetscFree(mprk->YdotRHS_medium);CHKERRQ(ierr);
9837c0df07dSHong Zhang       }
9847c0df07dSHong Zhang       ierr = PetscFree(mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
9857c0df07dSHong Zhang     }
9867c0df07dSHong Zhang     ierr = PetscFree(mprk->YdotRHS_fast);CHKERRQ(ierr);
9877c0df07dSHong Zhang   }
9884b84eec9SHong Zhang   PetscFunctionReturn(0);
9894b84eec9SHong Zhang }
9904b84eec9SHong Zhang 
9914b84eec9SHong Zhang static PetscErrorCode TSReset_MPRK(TS ts)
9924b84eec9SHong Zhang {
9934b84eec9SHong Zhang   PetscErrorCode ierr;
9944b84eec9SHong Zhang 
9954b84eec9SHong Zhang   PetscFunctionBegin;
9964b84eec9SHong Zhang   ierr = TSMPRKTableauReset(ts);CHKERRQ(ierr);
9974b84eec9SHong Zhang   PetscFunctionReturn(0);
9984b84eec9SHong Zhang }
9994b84eec9SHong Zhang 
10004b84eec9SHong Zhang static PetscErrorCode DMCoarsenHook_TSMPRK(DM fine,DM coarse,void *ctx)
10014b84eec9SHong Zhang {
10024b84eec9SHong Zhang   PetscFunctionBegin;
10034b84eec9SHong Zhang   PetscFunctionReturn(0);
10044b84eec9SHong Zhang }
10054b84eec9SHong Zhang 
10064b84eec9SHong Zhang static PetscErrorCode DMRestrictHook_TSMPRK(DM fine,Mat restrct,Vec rscale,Mat inject,DM coarse,void *ctx)
10074b84eec9SHong Zhang {
10084b84eec9SHong Zhang   PetscFunctionBegin;
10094b84eec9SHong Zhang   PetscFunctionReturn(0);
10104b84eec9SHong Zhang }
10114b84eec9SHong Zhang 
10124b84eec9SHong Zhang static PetscErrorCode DMSubDomainHook_TSMPRK(DM dm,DM subdm,void *ctx)
10134b84eec9SHong Zhang {
10144b84eec9SHong Zhang   PetscFunctionBegin;
10154b84eec9SHong Zhang   PetscFunctionReturn(0);
10164b84eec9SHong Zhang }
10174b84eec9SHong Zhang 
10184b84eec9SHong Zhang static PetscErrorCode DMSubDomainRestrictHook_TSMPRK(DM dm,VecScatter gscat,VecScatter lscat,DM subdm,void *ctx)
10194b84eec9SHong Zhang {
10204b84eec9SHong Zhang   PetscFunctionBegin;
10214b84eec9SHong Zhang   PetscFunctionReturn(0);
10224b84eec9SHong Zhang }
10234b84eec9SHong Zhang 
10244b84eec9SHong Zhang static PetscErrorCode TSMPRKTableauSetUp(TS ts)
10254b84eec9SHong Zhang {
10264b84eec9SHong Zhang   TS_MPRK        *mprk  = (TS_MPRK*)ts->data;
10274b84eec9SHong Zhang   MPRKTableau    tab = mprk->tableau;
102819c2959aSHong Zhang   Vec            YdotRHS_slow,YdotRHS_slowbuffer,YdotRHS_medium,YdotRHS_mediumbuffer,YdotRHS_fast;
10294b84eec9SHong Zhang   PetscErrorCode ierr;
10304b84eec9SHong Zhang 
10314b84eec9SHong Zhang   PetscFunctionBegin;
10324b84eec9SHong Zhang   ierr = VecDuplicateVecs(ts->vec_sol,tab->s,&mprk->Y);CHKERRQ(ierr);
10337c0df07dSHong Zhang   if (mprk->is_slow) {
103419c2959aSHong Zhang     ierr = PetscMalloc1(tab->s,&mprk->work_slow);CHKERRQ(ierr);
10354b84eec9SHong Zhang   }
10367c0df07dSHong Zhang   ierr = PetscMalloc1(tab->s,&mprk->work_slowbuffer);CHKERRQ(ierr);
10377c0df07dSHong Zhang   if (tab->np == 3) {
10387c0df07dSHong Zhang     if (mprk->is_medium) {
10397c0df07dSHong Zhang       ierr = PetscMalloc1(tab->s,&mprk->work_medium);CHKERRQ(ierr);
10407c0df07dSHong Zhang     }
10417c0df07dSHong Zhang     ierr = PetscMalloc1(tab->s,&mprk->work_mediumbuffer);CHKERRQ(ierr);
10427c0df07dSHong Zhang   }
10437c0df07dSHong Zhang   ierr = PetscMalloc1(tab->s,&mprk->work_fast);CHKERRQ(ierr);
10447c0df07dSHong Zhang 
10450fe4d17eSHong Zhang   if (ts->use_splitrhsfunction) {
104619c2959aSHong Zhang     if (mprk->is_slow) {
10474b84eec9SHong Zhang       ierr = VecGetSubVector(ts->vec_sol,mprk->is_slow,&YdotRHS_slow);CHKERRQ(ierr);
10484b84eec9SHong Zhang       ierr = VecDuplicateVecs(YdotRHS_slow,tab->s,&mprk->YdotRHS_slow);CHKERRQ(ierr);
10494b84eec9SHong Zhang       ierr = VecRestoreSubVector(ts->vec_sol,mprk->is_slow,&YdotRHS_slow);CHKERRQ(ierr);
105019c2959aSHong Zhang     }
105119c2959aSHong Zhang     ierr = VecGetSubVector(ts->vec_sol,mprk->is_slowbuffer,&YdotRHS_slowbuffer);CHKERRQ(ierr);
105219c2959aSHong Zhang     ierr = VecDuplicateVecs(YdotRHS_slowbuffer,tab->s,&mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
105319c2959aSHong Zhang     ierr = VecRestoreSubVector(ts->vec_sol,mprk->is_slowbuffer,&YdotRHS_slowbuffer);CHKERRQ(ierr);
105419c2959aSHong Zhang     if (tab->np == 3) {
105519c2959aSHong Zhang       if (mprk->is_medium) {
105619c2959aSHong Zhang         ierr = VecGetSubVector(ts->vec_sol,mprk->is_medium,&YdotRHS_medium);CHKERRQ(ierr);
105719c2959aSHong Zhang         ierr = VecDuplicateVecs(YdotRHS_medium,tab->s,&mprk->YdotRHS_medium);CHKERRQ(ierr);
105819c2959aSHong Zhang         ierr = VecRestoreSubVector(ts->vec_sol,mprk->is_medium,&YdotRHS_medium);CHKERRQ(ierr);
105919c2959aSHong Zhang       }
106019c2959aSHong Zhang       ierr = VecGetSubVector(ts->vec_sol,mprk->is_mediumbuffer,&YdotRHS_mediumbuffer);CHKERRQ(ierr);
106119c2959aSHong Zhang       ierr = VecDuplicateVecs(YdotRHS_mediumbuffer,tab->s,&mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
106219c2959aSHong Zhang       ierr = VecRestoreSubVector(ts->vec_sol,mprk->is_mediumbuffer,&YdotRHS_mediumbuffer);CHKERRQ(ierr);
106319c2959aSHong Zhang     }
106419c2959aSHong Zhang     ierr = VecGetSubVector(ts->vec_sol,mprk->is_fast,&YdotRHS_fast);CHKERRQ(ierr);
106519c2959aSHong Zhang     ierr = VecDuplicateVecs(YdotRHS_fast,tab->s,&mprk->YdotRHS_fast);CHKERRQ(ierr);
10664b84eec9SHong Zhang     ierr = VecRestoreSubVector(ts->vec_sol,mprk->is_fast,&YdotRHS_fast);CHKERRQ(ierr);
10670fe4d17eSHong Zhang   } else {
10680fe4d17eSHong Zhang     ierr = VecDuplicateVecs(ts->vec_sol,tab->s,&mprk->YdotRHS);CHKERRQ(ierr);
10690fe4d17eSHong Zhang     if (mprk->is_slow) {
10700fe4d17eSHong Zhang       ierr = PetscMalloc1(tab->s,&mprk->YdotRHS_slow);CHKERRQ(ierr);
10710fe4d17eSHong Zhang     }
10720fe4d17eSHong Zhang     ierr = PetscMalloc1(tab->s,&mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
10730fe4d17eSHong Zhang     if (tab->np == 3) {
10740fe4d17eSHong Zhang       if (mprk->is_medium) {
10750fe4d17eSHong Zhang         ierr = PetscMalloc1(tab->s,&mprk->YdotRHS_medium);CHKERRQ(ierr);
10760fe4d17eSHong Zhang       }
10770fe4d17eSHong Zhang       ierr = PetscMalloc1(tab->s,&mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
10780fe4d17eSHong Zhang     }
10790fe4d17eSHong Zhang     ierr = PetscMalloc1(tab->s,&mprk->YdotRHS_fast);CHKERRQ(ierr);
10804b84eec9SHong Zhang   }
10814b84eec9SHong Zhang   PetscFunctionReturn(0);
10824b84eec9SHong Zhang }
10834b84eec9SHong Zhang 
10844b84eec9SHong Zhang static PetscErrorCode TSSetUp_MPRK(TS ts)
10854b84eec9SHong Zhang {
10864b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
108719c2959aSHong Zhang   MPRKTableau    tab = mprk->tableau;
10884b84eec9SHong Zhang   DM             dm;
10894b84eec9SHong Zhang   PetscErrorCode ierr;
10904b84eec9SHong Zhang 
10914b84eec9SHong Zhang   PetscFunctionBegin;
10924b84eec9SHong Zhang   ierr = TSRHSSplitGetIS(ts,"slow",&mprk->is_slow);CHKERRQ(ierr);
10934b84eec9SHong Zhang   ierr = TSRHSSplitGetIS(ts,"fast",&mprk->is_fast);CHKERRQ(ierr);
109419c2959aSHong Zhang   if (!mprk->is_slow || !mprk->is_fast) SETERRQ1(PetscObjectComm((PetscObject)ts),PETSC_ERR_USER,"Must set up RHSSplits with TSRHSSplitSetIS() using split names 'slow' and 'fast' respectively in order to use the method '%s'",tab->name);
109519c2959aSHong Zhang 
109619c2959aSHong Zhang   if (tab->np == 3) {
109719c2959aSHong Zhang     ierr = TSRHSSplitGetIS(ts,"medium",&mprk->is_medium);CHKERRQ(ierr);
109819c2959aSHong Zhang     if (!mprk->is_medium) SETERRQ1(PetscObjectComm((PetscObject)ts),PETSC_ERR_USER,"Must set up RHSSplits with TSRHSSplitSetIS() using split names 'slow' and 'medium' and 'fast' respectively in order to use the method '%s'",tab->name);
109919c2959aSHong Zhang     ierr = TSRHSSplitGetIS(ts,"mediumbuffer",&mprk->is_mediumbuffer);CHKERRQ(ierr);
110019c2959aSHong Zhang     if (!mprk->is_mediumbuffer) { /* let medium buffer cover whole medium region */
110119c2959aSHong Zhang       mprk->is_mediumbuffer = mprk->is_medium;
110219c2959aSHong Zhang       mprk->is_medium = NULL;
110319c2959aSHong Zhang     }
110419c2959aSHong Zhang   }
110519c2959aSHong Zhang 
110619c2959aSHong Zhang   /* If users do not provide buffer region settings, the solver will do them automatically, but with a performance penalty */
110719c2959aSHong Zhang   ierr = TSRHSSplitGetIS(ts,"slowbuffer",&mprk->is_slowbuffer);CHKERRQ(ierr);
110819c2959aSHong Zhang   if (!mprk->is_slowbuffer) { /* let slow buffer cover whole slow region */
110919c2959aSHong Zhang     mprk->is_slowbuffer = mprk->is_slow;
111019c2959aSHong Zhang     mprk->is_slow = NULL;
111119c2959aSHong Zhang   }
11124b84eec9SHong Zhang   ierr = TSCheckImplicitTerm(ts);CHKERRQ(ierr);
11134b84eec9SHong Zhang   ierr = TSMPRKTableauSetUp(ts);CHKERRQ(ierr);
11144b84eec9SHong Zhang   ierr = TSGetDM(ts,&dm);CHKERRQ(ierr);
11154b84eec9SHong Zhang   ierr = DMCoarsenHookAdd(dm,DMCoarsenHook_TSMPRK,DMRestrictHook_TSMPRK,ts);CHKERRQ(ierr);
11164b84eec9SHong Zhang   ierr = DMSubDomainHookAdd(dm,DMSubDomainHook_TSMPRK,DMSubDomainRestrictHook_TSMPRK,ts);CHKERRQ(ierr);
11170fe4d17eSHong Zhang   if (ts->use_splitrhsfunction) {
11180fe4d17eSHong Zhang     ts->ops->step         = TSStep_MPRKSPLIT;
11190fe4d17eSHong Zhang     ts->ops->evaluatestep = TSEvaluateStep_MPRKSPLIT;
11200fe4d17eSHong Zhang     ierr = TSMPRKSetSplits(ts);CHKERRQ(ierr);
11210fe4d17eSHong Zhang   } else {
11220fe4d17eSHong Zhang     ts->ops->step         = TSStep_MPRK;
11230fe4d17eSHong Zhang     ts->ops->evaluatestep = TSEvaluateStep_MPRK;
11240fe4d17eSHong Zhang   }
11254b84eec9SHong Zhang   PetscFunctionReturn(0);
11264b84eec9SHong Zhang }
11274b84eec9SHong Zhang 
11284b84eec9SHong Zhang static PetscErrorCode TSSetFromOptions_MPRK(PetscOptionItems *PetscOptionsObject,TS ts)
11294b84eec9SHong Zhang {
11304b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
11314b84eec9SHong Zhang   PetscErrorCode ierr;
11324b84eec9SHong Zhang 
11334b84eec9SHong Zhang   PetscFunctionBegin;
11344b84eec9SHong Zhang   ierr = PetscOptionsHead(PetscOptionsObject,"PRK ODE solver options");CHKERRQ(ierr);
11354b84eec9SHong Zhang   {
11364b84eec9SHong Zhang     MPRKTableauLink link;
11374b84eec9SHong Zhang     PetscInt        count,choice;
11384b84eec9SHong Zhang     PetscBool       flg;
11394b84eec9SHong Zhang     const char      **namelist;
11404b84eec9SHong Zhang     for (link=MPRKTableauList,count=0; link; link=link->next,count++) ;
11414b84eec9SHong Zhang     ierr = PetscMalloc1(count,(char***)&namelist);CHKERRQ(ierr);
11424b84eec9SHong Zhang     for (link=MPRKTableauList,count=0; link; link=link->next,count++) namelist[count] = link->tab.name;
11434b84eec9SHong Zhang     ierr = PetscOptionsEList("-ts_mprk_type","Family of MPRK method","TSMPRKSetType",(const char*const*)namelist,count,mprk->tableau->name,&choice,&flg);CHKERRQ(ierr);
11444b84eec9SHong Zhang     if (flg) {ierr = TSMPRKSetType(ts,namelist[choice]);CHKERRQ(ierr);}
11454b84eec9SHong Zhang     ierr = PetscFree(namelist);CHKERRQ(ierr);
11464b84eec9SHong Zhang   }
11474b84eec9SHong Zhang   ierr = PetscOptionsTail();CHKERRQ(ierr);
11484b84eec9SHong Zhang   PetscFunctionReturn(0);
11494b84eec9SHong Zhang }
11504b84eec9SHong Zhang 
11514b84eec9SHong Zhang static PetscErrorCode TSView_MPRK(TS ts,PetscViewer viewer)
11524b84eec9SHong Zhang {
11534b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
11544b84eec9SHong Zhang   PetscBool      iascii;
11554b84eec9SHong Zhang   PetscErrorCode ierr;
11564b84eec9SHong Zhang 
11574b84eec9SHong Zhang   PetscFunctionBegin;
11584b84eec9SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
11594b84eec9SHong Zhang   if (iascii) {
11604b84eec9SHong Zhang     MPRKTableau tab  = mprk->tableau;
11614b84eec9SHong Zhang     TSMPRKType  mprktype;
11624b84eec9SHong Zhang     char        fbuf[512];
11634b84eec9SHong Zhang     char        sbuf[512];
116419c2959aSHong Zhang     PetscInt    i;
11654b84eec9SHong Zhang     ierr = TSMPRKGetType(ts,&mprktype);CHKERRQ(ierr);
11664b84eec9SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  MPRK type %s\n",mprktype);CHKERRQ(ierr);
11674b84eec9SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  Order: %D\n",tab->order);CHKERRQ(ierr);
116819c2959aSHong Zhang 
11694b84eec9SHong Zhang     ierr = PetscFormatRealArray(fbuf,sizeof(fbuf),"% 8.6f",tab->s,tab->cf);CHKERRQ(ierr);
11704b84eec9SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  Abscissa cf = %s\n",fbuf);CHKERRQ(ierr);
117119c2959aSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  Af = \n");CHKERRQ(ierr);
117219c2959aSHong Zhang     for (i=0; i<tab->s; i++) {
117319c2959aSHong Zhang       ierr = PetscFormatRealArray(fbuf,sizeof(fbuf),"% 8.6f",tab->s,&tab->Af[i*tab->s]);CHKERRQ(ierr);
117419c2959aSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"    %s\n",fbuf);CHKERRQ(ierr);
117519c2959aSHong Zhang     }
117619c2959aSHong Zhang     ierr = PetscFormatRealArray(fbuf,sizeof(fbuf),"% 8.6f",tab->s,tab->bf);CHKERRQ(ierr);
117719c2959aSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  bf = %s\n",fbuf);CHKERRQ(ierr);
117819c2959aSHong Zhang 
117919c2959aSHong Zhang     ierr = PetscFormatRealArray(sbuf,sizeof(sbuf),"% 8.6f",tab->s,tab->csb);CHKERRQ(ierr);
118019c2959aSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  Abscissa csb = %s\n",sbuf);CHKERRQ(ierr);
118119c2959aSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  Asb = \n");CHKERRQ(ierr);
118219c2959aSHong Zhang     for (i=0; i<tab->s; i++) {
118319c2959aSHong Zhang       ierr = PetscFormatRealArray(sbuf,sizeof(sbuf),"% 8.6f",tab->s,&tab->Asb[i*tab->s]);CHKERRQ(ierr);
118419c2959aSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"    %s\n",sbuf);CHKERRQ(ierr);
118519c2959aSHong Zhang     }
118619c2959aSHong Zhang     ierr = PetscFormatRealArray(sbuf,sizeof(sbuf),"% 8.6f",tab->s,tab->bsb);CHKERRQ(ierr);
118719c2959aSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  bsb = %s\n",sbuf);CHKERRQ(ierr);
118819c2959aSHong Zhang 
118919c2959aSHong Zhang     if (tab->np == 3) {
119019c2959aSHong Zhang       char mbuf[512];
119119c2959aSHong Zhang       ierr = PetscFormatRealArray(mbuf,sizeof(mbuf),"% 8.6f",tab->s,tab->cmb);CHKERRQ(ierr);
119219c2959aSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  Abscissa cmb = %s\n",mbuf);CHKERRQ(ierr);
119319c2959aSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  Amb = \n");CHKERRQ(ierr);
119419c2959aSHong Zhang       for (i=0; i<tab->s; i++) {
119519c2959aSHong Zhang         ierr = PetscFormatRealArray(mbuf,sizeof(mbuf),"% 8.6f",tab->s,&tab->Amb[i*tab->s]);CHKERRQ(ierr);
119619c2959aSHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"    %s\n",mbuf);CHKERRQ(ierr);
119719c2959aSHong Zhang       }
119819c2959aSHong Zhang       ierr = PetscFormatRealArray(mbuf,sizeof(mbuf),"% 8.6f",tab->s,tab->bmb);CHKERRQ(ierr);
119919c2959aSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  bmb = %s\n",mbuf);CHKERRQ(ierr);
120019c2959aSHong Zhang     }
12014b84eec9SHong Zhang   }
12024b84eec9SHong Zhang   PetscFunctionReturn(0);
12034b84eec9SHong Zhang }
12044b84eec9SHong Zhang 
12054b84eec9SHong Zhang static PetscErrorCode TSLoad_MPRK(TS ts,PetscViewer viewer)
12064b84eec9SHong Zhang {
12074b84eec9SHong Zhang   PetscErrorCode ierr;
12084b84eec9SHong Zhang   TSAdapt        adapt;
12094b84eec9SHong Zhang 
12104b84eec9SHong Zhang   PetscFunctionBegin;
12114b84eec9SHong Zhang   ierr = TSGetAdapt(ts,&adapt);CHKERRQ(ierr);
12124b84eec9SHong Zhang   ierr = TSAdaptLoad(adapt,viewer);CHKERRQ(ierr);
12134b84eec9SHong Zhang   PetscFunctionReturn(0);
12144b84eec9SHong Zhang }
12154b84eec9SHong Zhang 
12164b84eec9SHong Zhang /*@C
12174b84eec9SHong Zhang   TSMPRKSetType - Set the type of MPRK scheme
12184b84eec9SHong Zhang 
12190fe4d17eSHong Zhang   Not collective
12204b84eec9SHong Zhang 
12214b84eec9SHong Zhang   Input Parameter:
12224b84eec9SHong Zhang +  ts - timestepping context
12234b84eec9SHong Zhang -  mprktype - type of MPRK-scheme
12244b84eec9SHong Zhang 
12254b84eec9SHong Zhang   Options Database:
12264b84eec9SHong Zhang .   -ts_mprk_type - <pm2,p2,p3>
12274b84eec9SHong Zhang 
12284b84eec9SHong Zhang   Level: intermediate
12294b84eec9SHong Zhang 
12304b84eec9SHong Zhang .seealso: TSMPRKGetType(), TSMPRK, TSMPRKType
12314b84eec9SHong Zhang @*/
12324b84eec9SHong Zhang PetscErrorCode TSMPRKSetType(TS ts,TSMPRKType mprktype)
12334b84eec9SHong Zhang {
12344b84eec9SHong Zhang   PetscErrorCode ierr;
12354b84eec9SHong Zhang 
12364b84eec9SHong Zhang   PetscFunctionBegin;
12374b84eec9SHong Zhang   PetscValidHeaderSpecific(ts,TS_CLASSID,1);
12384b84eec9SHong Zhang   PetscValidCharPointer(mprktype,2);
12394b84eec9SHong Zhang   ierr = PetscTryMethod(ts,"TSMPRKSetType_C",(TS,TSMPRKType),(ts,mprktype));CHKERRQ(ierr);
12404b84eec9SHong Zhang   PetscFunctionReturn(0);
12414b84eec9SHong Zhang }
12424b84eec9SHong Zhang 
12434b84eec9SHong Zhang /*@C
12444b84eec9SHong Zhang   TSMPRKGetType - Get the type of MPRK scheme
12454b84eec9SHong Zhang 
12460fe4d17eSHong Zhang   Not collective
12474b84eec9SHong Zhang 
12484b84eec9SHong Zhang   Input Parameter:
12494b84eec9SHong Zhang .  ts - timestepping context
12504b84eec9SHong Zhang 
12514b84eec9SHong Zhang   Output Parameter:
12524b84eec9SHong Zhang .  mprktype - type of MPRK-scheme
12534b84eec9SHong Zhang 
12544b84eec9SHong Zhang   Level: intermediate
12554b84eec9SHong Zhang 
12564b84eec9SHong Zhang .seealso: TSMPRKGetType()
12574b84eec9SHong Zhang @*/
12584b84eec9SHong Zhang PetscErrorCode TSMPRKGetType(TS ts,TSMPRKType *mprktype)
12594b84eec9SHong Zhang {
12604b84eec9SHong Zhang   PetscErrorCode ierr;
12614b84eec9SHong Zhang 
12624b84eec9SHong Zhang   PetscFunctionBegin;
12634b84eec9SHong Zhang   PetscValidHeaderSpecific(ts,TS_CLASSID,1);
12644b84eec9SHong Zhang   ierr = PetscUseMethod(ts,"TSMPRKGetType_C",(TS,TSMPRKType*),(ts,mprktype));CHKERRQ(ierr);
12654b84eec9SHong Zhang   PetscFunctionReturn(0);
12664b84eec9SHong Zhang }
12674b84eec9SHong Zhang 
12684b84eec9SHong Zhang static PetscErrorCode TSMPRKGetType_MPRK(TS ts,TSMPRKType *mprktype)
12694b84eec9SHong Zhang {
12704b84eec9SHong Zhang   TS_MPRK *mprk = (TS_MPRK*)ts->data;
12714b84eec9SHong Zhang 
12724b84eec9SHong Zhang   PetscFunctionBegin;
12734b84eec9SHong Zhang   *mprktype = mprk->tableau->name;
12744b84eec9SHong Zhang   PetscFunctionReturn(0);
12754b84eec9SHong Zhang }
12764b84eec9SHong Zhang 
12774b84eec9SHong Zhang static PetscErrorCode TSMPRKSetType_MPRK(TS ts,TSMPRKType mprktype)
12784b84eec9SHong Zhang {
12794b84eec9SHong Zhang   TS_MPRK         *mprk = (TS_MPRK*)ts->data;
12804b84eec9SHong Zhang   PetscBool       match;
12814b84eec9SHong Zhang   MPRKTableauLink link;
12824b84eec9SHong Zhang   PetscErrorCode  ierr;
12834b84eec9SHong Zhang 
12844b84eec9SHong Zhang   PetscFunctionBegin;
12854b84eec9SHong Zhang   if (mprk->tableau) {
12864b84eec9SHong Zhang     ierr = PetscStrcmp(mprk->tableau->name,mprktype,&match);CHKERRQ(ierr);
12874b84eec9SHong Zhang     if (match) PetscFunctionReturn(0);
12884b84eec9SHong Zhang   }
12894b84eec9SHong Zhang   for (link = MPRKTableauList; link; link=link->next) {
12904b84eec9SHong Zhang     ierr = PetscStrcmp(link->tab.name,mprktype,&match);CHKERRQ(ierr);
12914b84eec9SHong Zhang     if (match) {
12924b84eec9SHong Zhang       if (ts->setupcalled) {ierr = TSMPRKTableauReset(ts);CHKERRQ(ierr);}
12934b84eec9SHong Zhang       mprk->tableau = &link->tab;
12944b84eec9SHong Zhang       if (ts->setupcalled) {ierr = TSMPRKTableauSetUp(ts);CHKERRQ(ierr);}
12954b84eec9SHong Zhang       PetscFunctionReturn(0);
12964b84eec9SHong Zhang     }
12974b84eec9SHong Zhang   }
12984b84eec9SHong Zhang   SETERRQ1(PetscObjectComm((PetscObject)ts),PETSC_ERR_ARG_UNKNOWN_TYPE,"Could not find '%s'",mprktype);
12994b84eec9SHong Zhang   PetscFunctionReturn(0);
13004b84eec9SHong Zhang }
13014b84eec9SHong Zhang 
13024b84eec9SHong Zhang static PetscErrorCode TSGetStages_MPRK(TS ts,PetscInt *ns,Vec **Y)
13034b84eec9SHong Zhang {
13044b84eec9SHong Zhang   TS_MPRK *mprk = (TS_MPRK*)ts->data;
13054b84eec9SHong Zhang 
13064b84eec9SHong Zhang   PetscFunctionBegin;
13074b84eec9SHong Zhang   *ns = mprk->tableau->s;
13084b84eec9SHong Zhang   if (Y) *Y = mprk->Y;
13094b84eec9SHong Zhang   PetscFunctionReturn(0);
13104b84eec9SHong Zhang }
13114b84eec9SHong Zhang 
13124b84eec9SHong Zhang static PetscErrorCode TSDestroy_MPRK(TS ts)
13134b84eec9SHong Zhang {
13144b84eec9SHong Zhang   PetscErrorCode ierr;
13154b84eec9SHong Zhang 
13164b84eec9SHong Zhang   PetscFunctionBegin;
13174b84eec9SHong Zhang   ierr = TSReset_MPRK(ts);CHKERRQ(ierr);
13184b84eec9SHong Zhang   if (ts->dm) {
13194b84eec9SHong Zhang     ierr = DMCoarsenHookRemove(ts->dm,DMCoarsenHook_TSMPRK,DMRestrictHook_TSMPRK,ts);CHKERRQ(ierr);
13204b84eec9SHong Zhang     ierr = DMSubDomainHookRemove(ts->dm,DMSubDomainHook_TSMPRK,DMSubDomainRestrictHook_TSMPRK,ts);CHKERRQ(ierr);
13214b84eec9SHong Zhang   }
13224b84eec9SHong Zhang   ierr = PetscFree(ts->data);CHKERRQ(ierr);
13234b84eec9SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSMPRKGetType_C",NULL);CHKERRQ(ierr);
13244b84eec9SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSMPRKSetType_C",NULL);CHKERRQ(ierr);
13254b84eec9SHong Zhang   PetscFunctionReturn(0);
13264b84eec9SHong Zhang }
13274b84eec9SHong Zhang 
13284b84eec9SHong Zhang /*MC
1329f944a40eSHong Zhang       TSMPRK - ODE solver using Multirate Partitioned Runge-Kutta schemes
13304b84eec9SHong Zhang 
13314b84eec9SHong Zhang   The user should provide the right hand side of the equation
13324b84eec9SHong Zhang   using TSSetRHSFunction().
13334b84eec9SHong Zhang 
13344b84eec9SHong Zhang   Notes:
1335f944a40eSHong Zhang   The default is TSMPRKPM2, it can be changed with TSMPRKSetType() or -ts_mprk_type
13364b84eec9SHong Zhang 
13374b84eec9SHong Zhang   Level: beginner
13384b84eec9SHong Zhang 
13394b84eec9SHong Zhang .seealso:  TSCreate(), TS, TSSetType(), TSMPRKSetType(), TSMPRKGetType(), TSMPRKType, TSMPRKRegister(), TSMPRKSetMultirateType()
13404b84eec9SHong Zhang            TSMPRKM2, TSMPRKM3, TSMPRKRFSMR3, TSMPRKRFSMR2
13414b84eec9SHong Zhang 
13424b84eec9SHong Zhang M*/
13434b84eec9SHong Zhang PETSC_EXTERN PetscErrorCode TSCreate_MPRK(TS ts)
13444b84eec9SHong Zhang {
13454b84eec9SHong Zhang   TS_MPRK        *mprk;
13464b84eec9SHong Zhang   PetscErrorCode ierr;
13474b84eec9SHong Zhang 
13484b84eec9SHong Zhang   PetscFunctionBegin;
13494b84eec9SHong Zhang   ierr = TSMPRKInitializePackage();CHKERRQ(ierr);
13504b84eec9SHong Zhang 
13514b84eec9SHong Zhang   ts->ops->reset          = TSReset_MPRK;
13524b84eec9SHong Zhang   ts->ops->destroy        = TSDestroy_MPRK;
13534b84eec9SHong Zhang   ts->ops->view           = TSView_MPRK;
13544b84eec9SHong Zhang   ts->ops->load           = TSLoad_MPRK;
13554b84eec9SHong Zhang   ts->ops->setup          = TSSetUp_MPRK;
13564b84eec9SHong Zhang   ts->ops->step           = TSStep_MPRK;
13574b84eec9SHong Zhang   ts->ops->evaluatestep   = TSEvaluateStep_MPRK;
13584b84eec9SHong Zhang   ts->ops->setfromoptions = TSSetFromOptions_MPRK;
13594b84eec9SHong Zhang   ts->ops->getstages      = TSGetStages_MPRK;
13604b84eec9SHong Zhang 
13614b84eec9SHong Zhang   ierr = PetscNewLog(ts,&mprk);CHKERRQ(ierr);
13624b84eec9SHong Zhang   ts->data = (void*)mprk;
13634b84eec9SHong Zhang 
13644b84eec9SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSMPRKGetType_C",TSMPRKGetType_MPRK);CHKERRQ(ierr);
13654b84eec9SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSMPRKSetType_C",TSMPRKSetType_MPRK);CHKERRQ(ierr);
13664b84eec9SHong Zhang 
13674b84eec9SHong Zhang   ierr = TSMPRKSetType(ts,TSMPRKDefault);CHKERRQ(ierr);
13684b84eec9SHong Zhang   PetscFunctionReturn(0);
13694b84eec9SHong Zhang }
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