xref: /petsc/src/ts/impls/multirate/mprk.c (revision 580bdb303e1ee3b1222b2042810b4c26340259c6)
14b84eec9SHong Zhang /*
2f944a40eSHong Zhang   Code for time stepping with the Multirate Partitioned Runge-Kutta method
34b84eec9SHong Zhang 
44b84eec9SHong Zhang   Notes:
54b84eec9SHong Zhang   1) The general system is written as
6f944a40eSHong Zhang      Udot = F(t,U)
7f944a40eSHong Zhang      if one does not split the RHS function, but gives the indexes for both slow and fast components;
84b84eec9SHong Zhang   2) The general system is written as
94b84eec9SHong Zhang      Usdot = Fs(t,Us,Uf)
10f944a40eSHong Zhang      Ufdot = Ff(t,Us,Uf)
11f944a40eSHong Zhang      for component-wise partitioned system,
12f944a40eSHong Zhang      users should split the RHS function themselves and also provide the indexes for both slow and fast components.
1319c2959aSHong Zhang   3) To correct The confusing terminology in the paper, we use 'slow method', 'slow buffer method' and 'fast method' to denote the methods applied to 'slow region', 'slow buffer region' and 'fast region' respectively. The 'slow method' in the original paper actually means the 'slow buffer method'.
1419c2959aSHong Zhang   4) Why does the buffer region have to be inside the slow region? The buffer region is treated with a slow method essentially. Applying the slow method to a region with a fast characteristic time scale is apparently not a good choice.
1519c2959aSHong Zhang 
1619c2959aSHong Zhang   Reference:
1719c2959aSHong Zhang   Emil M. Constantinescu, Adrian Sandu, Multirate Timestepping Methods for Hyperbolic Conservation Laws, Journal of Scientific Computing 2007
184b84eec9SHong Zhang */
194b84eec9SHong Zhang 
204b84eec9SHong Zhang #include <petsc/private/tsimpl.h>                /*I   "petscts.h"   I*/
214b84eec9SHong Zhang #include <petscdm.h>
224b84eec9SHong Zhang 
2319c2959aSHong Zhang static TSMPRKType TSMPRKDefault = TSMPRK2A22;
244b84eec9SHong Zhang static PetscBool TSMPRKRegisterAllCalled;
254b84eec9SHong Zhang static PetscBool TSMPRKPackageInitialized;
264b84eec9SHong Zhang 
274b84eec9SHong Zhang typedef struct _MPRKTableau *MPRKTableau;
284b84eec9SHong Zhang struct _MPRKTableau {
294b84eec9SHong Zhang   char      *name;
304b84eec9SHong Zhang   PetscInt  order;                          /* Classical approximation order of the method i */
3179bc8a77SHong Zhang   PetscInt  sbase;                          /* Number of stages in the base method*/
324b84eec9SHong Zhang   PetscInt  s;                              /* Number of stages */
3319c2959aSHong Zhang   PetscInt  np;                             /* Number of partitions */
344b84eec9SHong Zhang   PetscReal *Af,*bf,*cf;                    /* Tableau for fast components */
3519c2959aSHong Zhang   PetscReal *Amb,*bmb,*cmb;                 /* Tableau for medium components */
3619c2959aSHong Zhang   PetscInt  *rmb;                           /* Array of flags for repeated stages in medium method */
3719c2959aSHong Zhang   PetscReal *Asb,*bsb,*csb;                 /* Tableau for slow components */
3819c2959aSHong Zhang   PetscInt  *rsb;                           /* Array of flags for repeated staged in slow method*/
394b84eec9SHong Zhang };
404b84eec9SHong Zhang typedef struct _MPRKTableauLink *MPRKTableauLink;
414b84eec9SHong Zhang struct _MPRKTableauLink {
424b84eec9SHong Zhang   struct _MPRKTableau tab;
434b84eec9SHong Zhang   MPRKTableauLink     next;
444b84eec9SHong Zhang };
454b84eec9SHong Zhang static MPRKTableauLink MPRKTableauList;
464b84eec9SHong Zhang 
474b84eec9SHong Zhang typedef struct {
484b84eec9SHong Zhang   MPRKTableau         tableau;
494b84eec9SHong Zhang   Vec                 *Y;                          /* States computed during the step                           */
507c0df07dSHong Zhang   Vec                 *YdotRHS;
514b84eec9SHong Zhang   Vec                 *YdotRHS_slow;               /* Function evaluations by slow tableau for slow components  */
5219c2959aSHong Zhang   Vec                 *YdotRHS_slowbuffer;         /* Function evaluations by slow tableau for slow components  */
5319c2959aSHong Zhang   Vec                 *YdotRHS_medium;             /* Function evaluations by slow tableau for slow components  */
5419c2959aSHong Zhang   Vec                 *YdotRHS_mediumbuffer;       /* Function evaluations by slow tableau for slow components  */
5519c2959aSHong Zhang   Vec                 *YdotRHS_fast;               /* Function evaluations by fast tableau for fast components  */
564b84eec9SHong Zhang   PetscScalar         *work_slow;                  /* Scalar work_slow by slow tableau                          */
5719c2959aSHong Zhang   PetscScalar         *work_slowbuffer;            /* Scalar work_slow by slow tableau                          */
5819c2959aSHong Zhang   PetscScalar         *work_medium;                /* Scalar work_slow by medium tableau                        */
5919c2959aSHong Zhang   PetscScalar         *work_mediumbuffer;          /* Scalar work_slow by medium tableau                        */
6019c2959aSHong Zhang   PetscScalar         *work_fast;                  /* Scalar work_fast by fast tableau                          */
614b84eec9SHong Zhang   PetscReal           stage_time;
624b84eec9SHong Zhang   TSStepStatus        status;
634b84eec9SHong Zhang   PetscReal           ptime;
644b84eec9SHong Zhang   PetscReal           time_step;
6519c2959aSHong Zhang   IS                  is_slow,is_slowbuffer,is_medium,is_mediumbuffer,is_fast;
6619c2959aSHong Zhang   TS                  subts_slow,subts_slowbuffer,subts_medium,subts_mediumbuffer,subts_fast;
674b84eec9SHong Zhang } TS_MPRK;
684b84eec9SHong Zhang 
6919c2959aSHong Zhang static PetscErrorCode TSMPRKGenerateTableau2(PetscInt ratio,PetscInt s,const PetscReal Abase[],const PetscReal bbase[],PetscReal A1[],PetscReal b1[],PetscReal A2[],PetscReal b2[])
7019c2959aSHong Zhang {
7119c2959aSHong Zhang   PetscInt i,j,k,l;
7219c2959aSHong Zhang 
7319c2959aSHong Zhang   PetscFunctionBegin;
7419c2959aSHong Zhang   for (k=0; k<ratio; k++) {
7519c2959aSHong Zhang     /* diagonal blocks */
7619c2959aSHong Zhang     for (i=0; i<s; i++)
7719c2959aSHong Zhang       for (j=0; j<s; j++) {
7819c2959aSHong Zhang         A1[(k*s+i)*ratio*s+k*s+j] = Abase[i*s+j];
7919c2959aSHong Zhang         A2[(k*s+i)*ratio*s+k*s+j] = Abase[i*s+j]/ratio;
8019c2959aSHong Zhang       }
8119c2959aSHong Zhang     /* off diagonal blocks */
8219c2959aSHong Zhang     for (l=0; l<k; l++)
8319c2959aSHong Zhang       for (i=0; i<s; i++)
8419c2959aSHong Zhang         for (j=0; j<s; j++)
8519c2959aSHong Zhang           A2[(k*s+i)*ratio*s+l*s+j] = bbase[j]/ratio;
8619c2959aSHong Zhang     for (j=0; j<s; j++) {
8719c2959aSHong Zhang       b1[k*s+j] = bbase[j]/ratio;
8819c2959aSHong Zhang       b2[k*s+j] = bbase[j]/ratio;
8919c2959aSHong Zhang     }
9019c2959aSHong Zhang   }
9119c2959aSHong Zhang   PetscFunctionReturn(0);
9219c2959aSHong Zhang }
9319c2959aSHong Zhang 
9419c2959aSHong Zhang static PetscErrorCode TSMPRKGenerateTableau3(PetscInt ratio,PetscInt s,const PetscReal Abase[],const PetscReal bbase[],PetscReal A1[],PetscReal b1[],PetscReal A2[],PetscReal b2[],PetscReal A3[],PetscReal b3[])
9519c2959aSHong Zhang {
9619c2959aSHong Zhang   PetscInt i,j,k,l,m,n;
9719c2959aSHong Zhang 
9819c2959aSHong Zhang   PetscFunctionBegin;
9919c2959aSHong Zhang   for (k=0; k<ratio; k++) { /* diagonal blocks of size ratio*s by ratio*s */
10019c2959aSHong Zhang     for (l=0; l<ratio; l++) /* diagonal sub-blocks of size s by s */
10119c2959aSHong Zhang       for (i=0; i<s; i++)
10219c2959aSHong Zhang         for (j=0; j<s; j++) {
10319c2959aSHong Zhang           A1[((k*ratio+l)*s+i)*ratio*ratio*s+(k*ratio+l)*s+j] = Abase[i*s+j];
10419c2959aSHong Zhang           A2[((k*ratio+l)*s+i)*ratio*ratio*s+(k*ratio+l)*s+j] = Abase[i*s+j]/ratio;
10519c2959aSHong Zhang           A3[((k*ratio+l)*s+i)*ratio*ratio*s+(k*ratio+l)*s+j] = Abase[i*s+j]/ratio/ratio;
10619c2959aSHong Zhang         }
10719c2959aSHong Zhang     for (l=0; l<k; l++) /* off-diagonal blocks of size ratio*s by ratio*s */
10819c2959aSHong Zhang       for (m=0; m<ratio; m++)
10919c2959aSHong Zhang         for (n=0; n<ratio; n++)
11019c2959aSHong Zhang           for (i=0; i<s; i++)
11119c2959aSHong Zhang             for (j=0; j<s; j++) {
11219c2959aSHong Zhang                A2[((k*ratio+m)*s+i)*ratio*ratio*s+(l*ratio+n)*s+j] = bbase[j]/ratio/ratio;
11319c2959aSHong Zhang                A3[((k*ratio+m)*s+i)*ratio*ratio*s+(l*ratio+n)*s+j] = bbase[j]/ratio/ratio;
11419c2959aSHong Zhang             }
11519c2959aSHong Zhang     for (m=0; m<ratio; m++)
11619c2959aSHong Zhang       for (n=0; n<m; n++) /* off-diagonal sub-blocks of size s by s in the diagonal blocks */
11719c2959aSHong Zhang           for (i=0; i<s; i++)
11819c2959aSHong Zhang             for (j=0; j<s; j++)
11919c2959aSHong Zhang                A3[((k*ratio+m)*s+i)*ratio*ratio*s+(k*ratio+n)*s+j] = bbase[j]/ratio/ratio;
12019c2959aSHong Zhang     for (n=0; n<ratio; n++)
12119c2959aSHong Zhang       for (j=0; j<s; j++) {
12219c2959aSHong Zhang         b1[(k*ratio+n)*s+j] = bbase[j]/ratio/ratio;
12319c2959aSHong Zhang         b2[(k*ratio+n)*s+j] = bbase[j]/ratio/ratio;
12419c2959aSHong Zhang         b3[(k*ratio+n)*s+j] = bbase[j]/ratio/ratio;
12519c2959aSHong Zhang       }
12619c2959aSHong Zhang   }
12719c2959aSHong Zhang   PetscFunctionReturn(0);
12819c2959aSHong Zhang }
12919c2959aSHong Zhang 
1304b84eec9SHong Zhang /*MC
131f944a40eSHong Zhang      TSMPRK2A22 - Second Order Multirate Partitioned Runge Kutta scheme based on RK2A.
1324b84eec9SHong Zhang 
13319c2959aSHong Zhang      This method has four stages for slow and fast parts. The refinement factor of the stepsize is 2.
13419c2959aSHong Zhang      r = 2, np = 2
1354b84eec9SHong Zhang      Options database:
13619c2959aSHong Zhang .     -ts_mprk_type 2a22
1374b84eec9SHong Zhang 
1384b84eec9SHong Zhang      Level: advanced
1394b84eec9SHong Zhang 
1404b84eec9SHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
1414b84eec9SHong Zhang M*/
1424b84eec9SHong Zhang /*MC
143f944a40eSHong Zhang      TSMPRK2A23 - Second Order Multirate Partitioned Runge-Kutta scheme based on RK2A.
14419c2959aSHong Zhang 
14519c2959aSHong Zhang      This method has eight stages for slow and medium and fast parts. The refinement factor of the stepsize is 2.
14619c2959aSHong Zhang      r = 2, np = 3
14719c2959aSHong Zhang      Options database:
14819c2959aSHong Zhang .     -ts_mprk_type 2a23
14919c2959aSHong Zhang 
15019c2959aSHong Zhang      Level: advanced
15119c2959aSHong Zhang 
15219c2959aSHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
15319c2959aSHong Zhang M*/
15419c2959aSHong Zhang /*MC
155f944a40eSHong Zhang      TSMPRK2A32 - Second Order Multirate Partitioned Runge-Kutta scheme based on RK2A.
15619c2959aSHong Zhang 
15719c2959aSHong Zhang      This method has four stages for slow and fast parts. The refinement factor of the stepsize is 3.
15819c2959aSHong Zhang      r = 3, np = 2
15919c2959aSHong Zhang      Options database:
16019c2959aSHong Zhang .     -ts_mprk_type 2a32
16119c2959aSHong Zhang 
16219c2959aSHong Zhang      Level: advanced
16319c2959aSHong Zhang 
16419c2959aSHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
16519c2959aSHong Zhang M*/
16619c2959aSHong Zhang /*MC
167f944a40eSHong Zhang      TSMPRK2A33 - Second Order Multirate Partitioned Runge-Kutta scheme based on RK2A.
16819c2959aSHong Zhang 
16919c2959aSHong Zhang      This method has eight stages for slow and medium and fast parts. The refinement factor of the stepsize is 3.
17019c2959aSHong Zhang      r = 3, np = 3
17119c2959aSHong Zhang      Options database:
17219c2959aSHong Zhang .     -ts_mprk_type 2a33
17319c2959aSHong Zhang 
17419c2959aSHong Zhang      Level: advanced
17519c2959aSHong Zhang 
17619c2959aSHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
17719c2959aSHong Zhang M*/
17819c2959aSHong Zhang /*MC
179f944a40eSHong Zhang      TSMPRK3P2M - Third Order Multirate Partitioned Runge-Kutta scheme.
1804b84eec9SHong Zhang 
1814b84eec9SHong Zhang      This method has eight stages for both slow and fast parts.
1824b84eec9SHong Zhang 
1834b84eec9SHong Zhang      Options database:
1844b84eec9SHong Zhang .     -ts_mprk_type pm3  (put here temporarily)
1854b84eec9SHong Zhang 
1864b84eec9SHong Zhang      Level: advanced
1874b84eec9SHong Zhang 
1884b84eec9SHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
1894b84eec9SHong Zhang M*/
1904b84eec9SHong Zhang /*MC
191f944a40eSHong Zhang      TSMPRKP2 - Second Order Multirate Partitioned Runge-Kutta scheme.
1924b84eec9SHong Zhang 
1934b84eec9SHong Zhang      This method has five stages for both slow and fast parts.
1944b84eec9SHong Zhang 
1954b84eec9SHong Zhang      Options database:
1964b84eec9SHong Zhang .     -ts_mprk_type p2
1974b84eec9SHong Zhang 
1984b84eec9SHong Zhang      Level: advanced
1994b84eec9SHong Zhang 
2004b84eec9SHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
2014b84eec9SHong Zhang M*/
2024b84eec9SHong Zhang /*MC
203f944a40eSHong Zhang      TSMPRKP3 - Third Order Multirate Partitioned Runge-Kutta scheme.
2044b84eec9SHong Zhang 
2054b84eec9SHong Zhang      This method has ten stages for both slow and fast parts.
2064b84eec9SHong Zhang 
2074b84eec9SHong Zhang      Options database:
2084b84eec9SHong Zhang .     -ts_mprk_type p3
2094b84eec9SHong Zhang 
2104b84eec9SHong Zhang      Level: advanced
2114b84eec9SHong Zhang 
2124b84eec9SHong Zhang .seealso: TSMPRK, TSMPRKType, TSMPRKSetType()
2134b84eec9SHong Zhang M*/
2144b84eec9SHong Zhang 
2154b84eec9SHong Zhang /*@C
2164b84eec9SHong Zhang   TSMPRKRegisterAll - Registers all of the Partirioned Runge-Kutta explicit methods in TSMPRK
2174b84eec9SHong Zhang 
2184b84eec9SHong Zhang   Not Collective, but should be called by all processes which will need the schemes to be registered
2194b84eec9SHong Zhang 
2204b84eec9SHong Zhang   Level: advanced
2214b84eec9SHong Zhang 
2224b84eec9SHong Zhang .seealso:  TSMPRKRegisterDestroy()
2234b84eec9SHong Zhang @*/
2244b84eec9SHong Zhang PetscErrorCode TSMPRKRegisterAll(void)
2254b84eec9SHong Zhang {
2264b84eec9SHong Zhang   PetscErrorCode ierr;
2274b84eec9SHong Zhang 
2284b84eec9SHong Zhang   PetscFunctionBegin;
2294b84eec9SHong Zhang   if (TSMPRKRegisterAllCalled) PetscFunctionReturn(0);
2304b84eec9SHong Zhang   TSMPRKRegisterAllCalled = PETSC_TRUE;
2314b84eec9SHong Zhang 
2324b84eec9SHong Zhang #define RC PetscRealConstant
2334b84eec9SHong Zhang   {
2344b84eec9SHong Zhang     const PetscReal
23519c2959aSHong Zhang       Abase[2][2] = {{0,0},
23619c2959aSHong Zhang                      {RC(1.0),0}},
23719c2959aSHong Zhang       bbase[2] = {RC(0.5),RC(0.5)};
23819c2959aSHong Zhang     PetscReal
23919c2959aSHong Zhang       Asb[4][4] = {{0}},Af[4][4] = {{0}},bsb[4] = {0},bf[4] = {0};
24019c2959aSHong Zhang     PetscInt
24119c2959aSHong Zhang       rsb[4] = {0,0,1,2};
24219c2959aSHong Zhang     ierr = TSMPRKGenerateTableau2(2,2,&Abase[0][0],bbase,&Asb[0][0],bsb,&Af[0][0],bf);CHKERRQ(ierr);
24379bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRK2A22,2,2,2,1,&Asb[0][0],bsb,NULL,rsb,NULL,NULL,NULL,NULL,&Af[0][0],bf,NULL);CHKERRQ(ierr);
2444b84eec9SHong Zhang   }
24519c2959aSHong Zhang   {
24619c2959aSHong Zhang     const PetscReal
24719c2959aSHong Zhang       Abase[2][2] = {{0,0},
24819c2959aSHong Zhang                      {RC(1.0),0}},
24919c2959aSHong Zhang       bbase[2]    = {RC(0.5),RC(0.5)};
25019c2959aSHong Zhang     PetscReal
25119c2959aSHong Zhang       Asb[8][8] = {{0}},Amb[8][8] = {{0}},Af[8][8] = {{0}},bsb[8] ={0},bmb[8] = {0},bf[8] = {0};
25219c2959aSHong Zhang     PetscInt
25319c2959aSHong Zhang       rsb[8] = {0,0,1,2,1,2,1,2},rmb[8] = {0,0,1,2,0,0,5,6};
25419c2959aSHong Zhang     ierr = TSMPRKGenerateTableau3(2,2,&Abase[0][0],bbase,&Asb[0][0],bsb,&Amb[0][0],bmb,&Af[0][0],bf);CHKERRQ(ierr);
25579bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRK2A23,2,2,2,2,&Asb[0][0],bsb,NULL,rsb,&Amb[0][0],bmb,NULL,rmb,&Af[0][0],bf,NULL);CHKERRQ(ierr);
25619c2959aSHong Zhang   }
25719c2959aSHong Zhang   {
25819c2959aSHong Zhang     const PetscReal
25919c2959aSHong Zhang       Abase[2][2] = {{0,0},
26019c2959aSHong Zhang                      {RC(1.0),0}},
26119c2959aSHong Zhang       bbase[2]    = {RC(0.5),RC(0.5)};
26219c2959aSHong Zhang     PetscReal
26319c2959aSHong Zhang       Asb[6][6] = {{0}},Af[6][6] = {{0}},bsb[6] = {0},bf[6] = {0};
26419c2959aSHong Zhang     PetscInt
26519c2959aSHong Zhang       rsb[6] = {0,0,1,2,1,2};
26619c2959aSHong Zhang     ierr = TSMPRKGenerateTableau2(3,2,&Abase[0][0],bbase,&Asb[0][0],bsb,&Af[0][0],bf);CHKERRQ(ierr);
26779bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRK2A32,2,2,3,1,&Asb[0][0],bsb,NULL,rsb,NULL,NULL,NULL,NULL,&Af[0][0],bf,NULL);CHKERRQ(ierr);
26819c2959aSHong Zhang   }
26919c2959aSHong Zhang   {
27019c2959aSHong Zhang     const PetscReal
27119c2959aSHong Zhang       Abase[2][2] = {{0,0},
27219c2959aSHong Zhang                      {RC(1.0),0}},
27319c2959aSHong Zhang       bbase[2]    = {RC(0.5),RC(0.5)};
27419c2959aSHong Zhang     PetscReal
27519c2959aSHong Zhang       Asb[18][18] = {{0}},Amb[18][18] = {{0}},Af[18][18] = {{0}},bsb[18] ={0},bmb[18] = {0},bf[18] = {0};
27619c2959aSHong Zhang     PetscInt
27719c2959aSHong Zhang       rsb[18] = {0,0,1,2,1,2,1,2,1,2,1,2,1,2,1,2,1,2},rmb[18] = {0,0,1,2,1,2,0,0,7,8,7,8,0,0,13,14,13,14};
27819c2959aSHong Zhang     ierr = TSMPRKGenerateTableau3(3,2,&Abase[0][0],bbase,&Asb[0][0],bsb,&Amb[0][0],bmb,&Af[0][0],bf);CHKERRQ(ierr);
27979bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRK2A33,2,2,3,3,&Asb[0][0],bsb,NULL,rsb,&Amb[0][0],bmb,NULL,rmb,&Af[0][0],bf,NULL);CHKERRQ(ierr);
28019c2959aSHong Zhang   }
28119c2959aSHong Zhang /*
28219c2959aSHong Zhang     PetscReal
28319c2959aSHong Zhang       Asb[8][8] = {{Abase[0][0],Abase[0][1],0,0,0,0,0,0},
28419c2959aSHong Zhang                    {Abase[1][0],Abase[1][1],0,0,0,0,0,0},
28519c2959aSHong Zhang                    {0,0,Abase[0][0],Abase[0][1],0,0,0,0},
28619c2959aSHong Zhang                    {0,0,Abase[1][0],Abase[1][1],0,0,0,0},
28719c2959aSHong Zhang                    {0,0,0,0,Abase[0][0],Abase[0][1],0,0},
28819c2959aSHong Zhang                    {0,0,0,0,Abase[1][0],Abase[1][1],0,0},
28919c2959aSHong Zhang                    {0,0,0,0,0,0,Abase[0][0],Abase[0][1]},
29019c2959aSHong Zhang                    {0,0,0,0,0,0,Abase[1][0],Abase[1][1]}},
29119c2959aSHong Zhang       Amb[8][8] = {{Abase[0][0]/m,Abase[0][1]/m,0,0,0,0,0,0},
29219c2959aSHong Zhang                    {Abase[1][0]/m,Abase[1][1]/m,0,0,0,0,0,0},
29319c2959aSHong Zhang                    {0,0,Abase[0][0]/m,Abase[0][1]/m,0,0,0,0},
29419c2959aSHong Zhang                    {0,0,Abase[1][0]/m,Abase[1][1]/m,0,0,0,0},
29519c2959aSHong Zhang                    {bbase[0]/m,bbase[1]/m,bbase[0]/m,bbase[1]/m,Abase[0][0]/m,Abase[0][1]/m,0,0},
29619c2959aSHong Zhang                    {bbase[0]/m,bbase[1]/m,bbase[0]/m,bbase[1]/m,Abase[1][0]/m,Abase[1][1]/m,0,0},
29719c2959aSHong Zhang                    {bbase[0]/m,bbase[1]/m,bbase[0]/m,bbase[1]/m,0,0,Abase[0][0]/m,Abase[0][1]/m},
29819c2959aSHong Zhang                    {bbase[0]/m,bbase[1]/m,bbase[0]/m,bbase[1]/m,0,0,Abase[1][0]/m,Abase[1][1]/m}},
29919c2959aSHong Zhang       Af[8][8] = {{Abase[0][0]/m/m,Abase[0][1]/m/m,0,0,0,0,0,0},
30019c2959aSHong Zhang                    {Abase[1][0]/m/m,Abase[1][1]/m/m,0,0,0,0,0,0},
30119c2959aSHong Zhang                    {0,0,Abase[0][0]/m/m,Abase[0][1]/m/m,0,0,0,0},
30219c2959aSHong Zhang                    {0,0,Abase[1][0]/m/m,Abase[1][1]/m/m,0,0,0,0},
30319c2959aSHong Zhang                    {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,Abase[0][0]/m/m,Abase[0][1]/m/m,0,0},
30419c2959aSHong Zhang                    {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,Abase[1][0]/m/m,Abase[1][1]/m/m,0,0},
30519c2959aSHong Zhang                    {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,Abase[0][0]/m,Abase[0][1]/m},
30619c2959aSHong Zhang                    {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,Abase[1][0]/m,Abase[1][1]/m}},
30719c2959aSHong Zhang       bsb[8]    = {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m},
30819c2959aSHong Zhang       bmb[8]    = {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m,bbase[1]/m/m},
30919c2959aSHong Zhang       bf[8]     = {bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m/m,bbase[0]/m/m,bbase[1]/m,bbase[0]/m/m,bbase[1]/m/m},
31019c2959aSHong Zhang */
3114b84eec9SHong Zhang   /*{
3124b84eec9SHong Zhang       const PetscReal
3134b84eec9SHong Zhang         As[8][8] = {{0,0,0,0,0,0,0,0},
3144b84eec9SHong Zhang                     {RC(1.0)/RC(2.0),0,0,0,0,0,0,0},
3154b84eec9SHong Zhang                     {RC(-1.0)/RC(6.0),RC(2.0)/RC(3.0),0,0,0,0,0,0},
3164b84eec9SHong Zhang                     {RC(1.0)/RC(3.0),RC(-1.0)/RC(3.0),RC(1.0),0,0,0,0,0},
3174b84eec9SHong Zhang                     {0,0,0,0,0,0,0,0},
3184b84eec9SHong Zhang                     {0,0,0,0,RC(1.0)/RC(2.0),0,0,0},
3194b84eec9SHong Zhang                     {0,0,0,0,RC(-1.0)/RC(6.0),RC(2.0)/RC(3.0),0,0},
3204b84eec9SHong Zhang                     {0,0,0,0,RC(1.0)/RC(3.0),RC(-1.0)/RC(3.0),RC(1.0),0}},
3214b84eec9SHong Zhang          A[8][8] = {{0,0,0,0,0,0,0,0},
3224b84eec9SHong Zhang                     {RC(1.0)/RC(4.0),0,0,0,0,0,0,0},
3234b84eec9SHong Zhang                     {RC(-1.0)/RC(12.0),RC(1.0)/RC(3.0),0,0,0,0,0,0},
3244b84eec9SHong Zhang                     {RC(1.0)/RC(6.0),RC(-1.0)/RC(6.0),RC(1.0)/RC(2.0),0,0,0,0,0},
3254b84eec9SHong Zhang                     {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,0,0,0},
3264b84eec9SHong Zhang                     {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),RC(1.0)/RC(4.0),0,0,0},
3274b84eec9SHong Zhang                     {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),RC(-1.0)/RC(12.0),RC(1.0)/RC(3.0),0,0},
3284b84eec9SHong Zhang                     {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(-1.0)/RC(6.0),RC(1.0)/RC(2.0),0}},
3294b84eec9SHong Zhang           bs[8] = {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0)},
3304b84eec9SHong Zhang            b[8] = {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0)};
3314b84eec9SHong Zhang            ierr = TSMPRKRegister(TSMPRKPM3,3,8,&As[0][0],bs,NULL,&A[0][0],b,NULL);CHKERRQ(ierr);
3324b84eec9SHong Zhang   }*/
3334b84eec9SHong Zhang 
3344b84eec9SHong Zhang   {
3354b84eec9SHong Zhang     const PetscReal
33619c2959aSHong Zhang       Asb[5][5] = {{0,0,0,0,0},
3374b84eec9SHong Zhang                    {RC(1.0)/RC(2.0),0,0,0,0},
3384b84eec9SHong Zhang                    {RC(1.0)/RC(2.0),0,0,0,0},
3394b84eec9SHong Zhang                    {RC(1.0),0,0,0,0},
3404b84eec9SHong Zhang                    {RC(1.0),0,0,0,0}},
34119c2959aSHong Zhang       Af[5][5]  = {{0,0,0,0,0},
3424b84eec9SHong Zhang                    {RC(1.0)/RC(2.0),0,0,0,0},
3434b84eec9SHong Zhang                    {RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),0,0,0},
3444b84eec9SHong Zhang                    {RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),RC(1.0)/RC(2.0),0,0},
3454b84eec9SHong Zhang                    {RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),0}},
34619c2959aSHong Zhang       bsb[5]    = {RC(1.0)/RC(2.0),0,0,0,RC(1.0)/RC(2.0)},
34719c2959aSHong Zhang       bf[5]     = {RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),RC(1.0)/RC(4.0),0};
34819c2959aSHong Zhang     const PetscInt
34919c2959aSHong Zhang       rsb[5]    = {0,0,2,0,4};
35079bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRKP2,2,5,1,1,&Asb[0][0],bsb,NULL,rsb,NULL,NULL,NULL,NULL,&Af[0][0],bf,NULL);CHKERRQ(ierr);
3514b84eec9SHong Zhang   }
3524b84eec9SHong Zhang 
3534b84eec9SHong Zhang   {
3544b84eec9SHong Zhang     const PetscReal
35519c2959aSHong Zhang       Asb[10][10] = {{0,0,0,0,0,0,0,0,0,0},
3564b84eec9SHong Zhang                      {RC(1.0)/RC(4.0),0,0,0,0,0,0,0,0,0},
3574b84eec9SHong Zhang                      {RC(1.0)/RC(4.0),0,0,0,0,0,0,0,0,0},
3584b84eec9SHong Zhang                      {RC(1.0)/RC(2.0),0,0,0,0,0,0,0,0,0},
3594b84eec9SHong Zhang                      {RC(1.0)/RC(2.0),0,0,0,0,0,0,0,0,0},
3604b84eec9SHong Zhang                      {RC(-1.0)/RC(6.0),0,0,0,RC(2.0)/RC(3.0),0,0,0,0,0},
3614b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),0,0,0,RC(1.0)/RC(6.0),RC(1.0)/RC(2.0),0,0,0,0},
3624b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),0,0,0,RC(1.0)/RC(6.0),RC(1.0)/RC(2.0),0,0,0,0},
3634b84eec9SHong Zhang                      {RC(1.0)/RC(3.0),0,0,0,RC(-1.0)/RC(3.0),RC(1.0),0,0,0,0},
3644b84eec9SHong Zhang                      {RC(1.0)/RC(3.0),0,0,0,RC(-1.0)/RC(3.0),RC(1.0),0,0,0,0}},
36519c2959aSHong Zhang       Af[10][10]  = {{0,0,0,0,0,0,0,0,0,0},
3664b84eec9SHong Zhang                      {RC(1.0)/RC(4.0),0,0,0,0,0,0,0,0,0},
3674b84eec9SHong Zhang                      {RC(-1.0)/RC(12.0),RC(1.0)/RC(3.0),0,0,0,0,0,0,0,0},
3684b84eec9SHong Zhang                      {RC(1.0)/RC(6.0),RC(-1.0)/RC(6.0),RC(1.0)/RC(2.0),0,0,0,0,0,0,0},
3694b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,0,0,0,0,0},
3704b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,0,0,0,0,0},
3714b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,RC(1.0)/RC(4.0),0,0,0,0},
3724b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,RC(-1.0)/RC(12.0),RC(1.0)/RC(3.0),0,0,0},
3734b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,RC(1.0)/RC(6.0),RC(-1.0)/RC(6.0),RC(1.0)/RC(2.0),0,0},
3744b84eec9SHong Zhang                      {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0}},
37519c2959aSHong Zhang       bsb[10]     = {RC(1.0)/RC(6.0),0,0,0,RC(1.0)/RC(3.0),RC(1.0)/RC(3.0),0,0,0,RC(1.0)/RC(6.0)},
37619c2959aSHong Zhang       bf[10]      = {RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0,RC(1.0)/RC(12.0),RC(1.0)/RC(6.0),RC(1.0)/RC(6.0),RC(1.0)/RC(12.0),0};
37719c2959aSHong Zhang     const PetscInt
37819c2959aSHong Zhang       rsb[10]     = {0,0,2,0,4,0,0,7,0,9};
37979bc8a77SHong Zhang     ierr = TSMPRKRegister(TSMPRKP3,3,5,2,1,&Asb[0][0],bsb,NULL,rsb,NULL,NULL,NULL,NULL,&Af[0][0],bf,NULL);CHKERRQ(ierr);
3804b84eec9SHong Zhang   }
3814b84eec9SHong Zhang #undef RC
3824b84eec9SHong Zhang   PetscFunctionReturn(0);
3834b84eec9SHong Zhang }
3844b84eec9SHong Zhang 
3854b84eec9SHong Zhang /*@C
3864b84eec9SHong Zhang    TSMPRKRegisterDestroy - Frees the list of schemes that were registered by TSMPRKRegister().
3874b84eec9SHong Zhang 
3884b84eec9SHong Zhang    Not Collective
3894b84eec9SHong Zhang 
3904b84eec9SHong Zhang    Level: advanced
3914b84eec9SHong Zhang 
3924b84eec9SHong Zhang .seealso: TSMPRKRegister(), TSMPRKRegisterAll()
3934b84eec9SHong Zhang @*/
3944b84eec9SHong Zhang PetscErrorCode TSMPRKRegisterDestroy(void)
3954b84eec9SHong Zhang {
3964b84eec9SHong Zhang   PetscErrorCode ierr;
3974b84eec9SHong Zhang   MPRKTableauLink link;
3984b84eec9SHong Zhang 
3994b84eec9SHong Zhang   PetscFunctionBegin;
4004b84eec9SHong Zhang   while ((link = MPRKTableauList)) {
4014b84eec9SHong Zhang     MPRKTableau t = &link->tab;
4024b84eec9SHong Zhang     MPRKTableauList = link->next;
40319c2959aSHong Zhang     ierr = PetscFree3(t->Asb,t->bsb,t->csb);CHKERRQ(ierr);
40419c2959aSHong Zhang     ierr = PetscFree3(t->Amb,t->bmb,t->cmb);CHKERRQ(ierr);
4054b84eec9SHong Zhang     ierr = PetscFree3(t->Af,t->bf,t->cf);CHKERRQ(ierr);
40641eb3033SHong Zhang     ierr = PetscFree(t->rsb);CHKERRQ(ierr);
40741eb3033SHong Zhang     ierr = PetscFree(t->rmb);CHKERRQ(ierr);
4084b84eec9SHong Zhang     ierr = PetscFree(t->name);CHKERRQ(ierr);
4094b84eec9SHong Zhang     ierr = PetscFree(link);CHKERRQ(ierr);
4104b84eec9SHong Zhang   }
4114b84eec9SHong Zhang   TSMPRKRegisterAllCalled = PETSC_FALSE;
4124b84eec9SHong Zhang   PetscFunctionReturn(0);
4134b84eec9SHong Zhang }
4144b84eec9SHong Zhang 
4154b84eec9SHong Zhang /*@C
4164b84eec9SHong Zhang   TSMPRKInitializePackage - This function initializes everything in the TSMPRK package. It is called
4174b84eec9SHong Zhang   from PetscDLLibraryRegister() when using dynamic libraries, and on the first call to TSCreate_MPRK()
4184b84eec9SHong Zhang   when using static libraries.
4194b84eec9SHong Zhang 
4204b84eec9SHong Zhang   Level: developer
4214b84eec9SHong Zhang 
4224b84eec9SHong Zhang .seealso: PetscInitialize()
4234b84eec9SHong Zhang @*/
4244b84eec9SHong Zhang PetscErrorCode TSMPRKInitializePackage(void)
4254b84eec9SHong Zhang {
4264b84eec9SHong Zhang   PetscErrorCode ierr;
4274b84eec9SHong Zhang 
4284b84eec9SHong Zhang   PetscFunctionBegin;
4294b84eec9SHong Zhang   if (TSMPRKPackageInitialized) PetscFunctionReturn(0);
4304b84eec9SHong Zhang   TSMPRKPackageInitialized = PETSC_TRUE;
4314b84eec9SHong Zhang   ierr = TSMPRKRegisterAll();CHKERRQ(ierr);
4324b84eec9SHong Zhang   ierr = PetscRegisterFinalize(TSMPRKFinalizePackage);CHKERRQ(ierr);
4334b84eec9SHong Zhang   PetscFunctionReturn(0);
4344b84eec9SHong Zhang }
4354b84eec9SHong Zhang 
4364b84eec9SHong Zhang /*@C
437f944a40eSHong Zhang   TSMPRKFinalizePackage - This function destroys everything in the TSMPRK package. It is
4384b84eec9SHong Zhang   called from PetscFinalize().
4394b84eec9SHong Zhang 
4404b84eec9SHong Zhang   Level: developer
4414b84eec9SHong Zhang 
4424b84eec9SHong Zhang .seealso: PetscFinalize()
4434b84eec9SHong Zhang @*/
4444b84eec9SHong Zhang PetscErrorCode TSMPRKFinalizePackage(void)
4454b84eec9SHong Zhang {
4464b84eec9SHong Zhang   PetscErrorCode ierr;
4474b84eec9SHong Zhang 
4484b84eec9SHong Zhang   PetscFunctionBegin;
4494b84eec9SHong Zhang   TSMPRKPackageInitialized = PETSC_FALSE;
4504b84eec9SHong Zhang   ierr = TSMPRKRegisterDestroy();CHKERRQ(ierr);
4514b84eec9SHong Zhang   PetscFunctionReturn(0);
4524b84eec9SHong Zhang }
4534b84eec9SHong Zhang 
4544b84eec9SHong Zhang /*@C
4554b84eec9SHong Zhang    TSMPRKRegister - register a MPRK scheme by providing the entries in the Butcher tableau
4564b84eec9SHong Zhang 
4574b84eec9SHong Zhang    Not Collective, but the same schemes should be registered on all processes on which they will be used
4584b84eec9SHong Zhang 
4594b84eec9SHong Zhang    Input Parameters:
4604b84eec9SHong Zhang +  name - identifier for method
4614b84eec9SHong Zhang .  order - approximation order of method
46279bc8a77SHong Zhang .  s  - number of stages in the base methods
46379bc8a77SHong Zhang .  ratio1 - stepsize ratio at 1st level (e.g. slow/medium)
46479bc8a77SHong Zhang .  ratio2 - stepsize ratio at 2nd level (e.g. medium/fast)
4654b84eec9SHong Zhang .  Af - stage coefficients for fast components(dimension s*s, row-major)
4664b84eec9SHong Zhang .  bf - step completion table for fast components(dimension s)
4674b84eec9SHong Zhang .  cf - abscissa for fast components(dimension s)
4684b84eec9SHong Zhang .  As - stage coefficients for slow components(dimension s*s, row-major)
4694b84eec9SHong Zhang .  bs - step completion table for slow components(dimension s)
4704b84eec9SHong Zhang -  cs - abscissa for slow components(dimension s)
4714b84eec9SHong Zhang 
4724b84eec9SHong Zhang    Notes:
4734b84eec9SHong Zhang    Several MPRK methods are provided, this function is only needed to create new methods.
4744b84eec9SHong Zhang 
4754b84eec9SHong Zhang    Level: advanced
4764b84eec9SHong Zhang 
4774b84eec9SHong Zhang .seealso: TSMPRK
4784b84eec9SHong Zhang @*/
47979bc8a77SHong Zhang PetscErrorCode TSMPRKRegister(TSMPRKType name,PetscInt order,
48079bc8a77SHong Zhang                               PetscInt sbase,PetscInt ratio1,PetscInt ratio2,
48119c2959aSHong Zhang                               const PetscReal Asb[],const PetscReal bsb[],const PetscReal csb[],const PetscInt rsb[],
48219c2959aSHong Zhang                               const PetscReal Amb[],const PetscReal bmb[],const PetscReal cmb[],const PetscInt rmb[],
4834b84eec9SHong Zhang                               const PetscReal Af[],const PetscReal bf[],const PetscReal cf[])
4844b84eec9SHong Zhang {
4854b84eec9SHong Zhang   MPRKTableauLink link;
4864b84eec9SHong Zhang   MPRKTableau     t;
48779bc8a77SHong Zhang   PetscInt        s,i,j;
4884b84eec9SHong Zhang   PetscErrorCode  ierr;
4894b84eec9SHong Zhang 
4904b84eec9SHong Zhang   PetscFunctionBegin;
4914b84eec9SHong Zhang   PetscValidCharPointer(name,1);
49219c2959aSHong Zhang   PetscValidRealPointer(Asb,4);
49379bc8a77SHong Zhang   if (bsb) PetscValidRealPointer(bsb,7);
49479bc8a77SHong Zhang   if (csb) PetscValidRealPointer(csb,8);
49579bc8a77SHong Zhang   if (rsb) PetscValidRealPointer(rsb,9);
49679bc8a77SHong Zhang   if (Amb) PetscValidRealPointer(Amb,10);
49779bc8a77SHong Zhang   if (bmb) PetscValidRealPointer(bmb,11);
49879bc8a77SHong Zhang   if (cmb) PetscValidRealPointer(cmb,12);
49979bc8a77SHong Zhang   if (rmb) PetscValidRealPointer(rmb,13);
50079bc8a77SHong Zhang   PetscValidRealPointer(Af,14);
50179bc8a77SHong Zhang   if (bf) PetscValidRealPointer(bf,15);
50279bc8a77SHong Zhang   if (cf) PetscValidRealPointer(cf,16);
5034b84eec9SHong Zhang 
5044b84eec9SHong Zhang   ierr = PetscNew(&link);CHKERRQ(ierr);
5054b84eec9SHong Zhang   t = &link->tab;
5064b84eec9SHong Zhang 
5074b84eec9SHong Zhang   ierr = PetscStrallocpy(name,&t->name);CHKERRQ(ierr);
50879bc8a77SHong Zhang   s = sbase*ratio1*ratio2; /*  this is the dimension of the matrices below */
5094b84eec9SHong Zhang   t->order = order;
51079bc8a77SHong Zhang   t->sbase = sbase;
5114b84eec9SHong Zhang   t->s  = s;
51219c2959aSHong Zhang   t->np = 2;
51379bc8a77SHong Zhang 
5144b84eec9SHong Zhang   ierr = PetscMalloc3(s*s,&t->Af,s,&t->bf,s,&t->cf);CHKERRQ(ierr);
515*580bdb30SBarry Smith   ierr = PetscArraycpy(t->Af,Af,s*s);CHKERRQ(ierr);
5164b84eec9SHong Zhang   if (bf) {
517*580bdb30SBarry Smith     ierr = PetscArraycpy(t->bf,bf,s);CHKERRQ(ierr);
51819c2959aSHong Zhang   } else
5194b84eec9SHong Zhang     for (i=0; i<s; i++) t->bf[i] = Af[(s-1)*s+i];
5204b84eec9SHong Zhang   if (cf) {
521*580bdb30SBarry Smith     ierr = PetscArraycpy(t->cf,cf,s);CHKERRQ(ierr);
52219c2959aSHong Zhang   } else {
5234b84eec9SHong Zhang     for (i=0; i<s; i++)
5244b84eec9SHong Zhang       for (j=0,t->cf[i]=0; j<s; j++)
5254b84eec9SHong Zhang         t->cf[i] += Af[i*s+j];
5264b84eec9SHong Zhang   }
52719c2959aSHong Zhang 
52819c2959aSHong Zhang   if (Amb) {
52919c2959aSHong Zhang     t->np = 3;
53019c2959aSHong Zhang     ierr = PetscMalloc3(s*s,&t->Amb,s,&t->bmb,s,&t->cmb);CHKERRQ(ierr);
53119c2959aSHong Zhang     ierr = PetscCalloc1(s,&t->rmb);CHKERRQ(ierr);
532*580bdb30SBarry Smith     ierr = PetscArraycpy(t->Amb,Amb,s*s);CHKERRQ(ierr);
53319c2959aSHong Zhang     if (bmb) {
534*580bdb30SBarry Smith       ierr = PetscArraycpy(t->bmb,bmb,s);CHKERRQ(ierr);
53519c2959aSHong Zhang     } else {
53619c2959aSHong Zhang       for (i=0; i<s; i++) t->bmb[i] = Amb[(s-1)*s+i];
5374b84eec9SHong Zhang     }
53819c2959aSHong Zhang     if (cmb) {
539*580bdb30SBarry Smith       ierr = PetscArraycpy(t->cmb,cmb,s);CHKERRQ(ierr);
54019c2959aSHong Zhang     } else {
5414b84eec9SHong Zhang       for (i=0; i<s; i++)
54219c2959aSHong Zhang         for (j=0,t->cmb[i]=0; j<s; j++)
54319c2959aSHong Zhang           t->cmb[i] += Amb[i*s+j];
54419c2959aSHong Zhang     }
54519c2959aSHong Zhang     if (rmb) {
546*580bdb30SBarry Smith       ierr = PetscArraycpy(t->rmb,rmb,s);CHKERRQ(ierr);
54719c2959aSHong Zhang     }
54819c2959aSHong Zhang   }
54919c2959aSHong Zhang 
55019c2959aSHong Zhang   ierr = PetscMalloc3(s*s,&t->Asb,s,&t->bsb,s,&t->csb);CHKERRQ(ierr);
551*580bdb30SBarry Smith   ierr = PetscArraycpy(t->Asb,Asb,s*s);CHKERRQ(ierr);
55219c2959aSHong Zhang   ierr = PetscCalloc1(s,&t->rsb);CHKERRQ(ierr);
55319c2959aSHong Zhang   if (bsb) {
554*580bdb30SBarry Smith     ierr = PetscArraycpy(t->bsb,bsb,s);CHKERRQ(ierr);
55519c2959aSHong Zhang   } else
55619c2959aSHong Zhang     for (i=0; i<s; i++) t->bsb[i] = Asb[(s-1)*s+i];
55719c2959aSHong Zhang   if (csb) {
558*580bdb30SBarry Smith     ierr = PetscArraycpy(t->csb,csb,s);CHKERRQ(ierr);
55919c2959aSHong Zhang   } else {
56019c2959aSHong Zhang     for (i=0; i<s; i++)
56119c2959aSHong Zhang       for (j=0,t->csb[i]=0; j<s; j++)
56219c2959aSHong Zhang         t->csb[i] += Asb[i*s+j];
56319c2959aSHong Zhang   }
56419c2959aSHong Zhang   if (rsb) {
565*580bdb30SBarry Smith     ierr = PetscArraycpy(t->rsb,rsb,s);CHKERRQ(ierr);
5664b84eec9SHong Zhang   }
5674b84eec9SHong Zhang   link->next = MPRKTableauList;
5684b84eec9SHong Zhang   MPRKTableauList = link;
5694b84eec9SHong Zhang   PetscFunctionReturn(0);
5704b84eec9SHong Zhang }
5714b84eec9SHong Zhang 
5724b84eec9SHong Zhang static PetscErrorCode TSMPRKSetSplits(TS ts)
5734b84eec9SHong Zhang {
5744b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
57519c2959aSHong Zhang   MPRKTableau    tab = mprk->tableau;
5764b84eec9SHong Zhang   DM             dm,subdm,newdm;
5774b84eec9SHong Zhang   PetscErrorCode ierr;
5784b84eec9SHong Zhang 
5794b84eec9SHong Zhang   PetscFunctionBegin;
5804b84eec9SHong Zhang   ierr = TSRHSSplitGetSubTS(ts,"slow",&mprk->subts_slow);CHKERRQ(ierr);
5814b84eec9SHong Zhang   ierr = TSRHSSplitGetSubTS(ts,"fast",&mprk->subts_fast);CHKERRQ(ierr);
5824b84eec9SHong Zhang   if (!mprk->subts_slow || !mprk->subts_fast) SETERRQ(PetscObjectComm((PetscObject)ts),PETSC_ERR_USER,"Must set up the RHSFunctions for 'slow' and 'fast' components using TSRHSSplitSetRHSFunction() or calling TSSetRHSFunction() for each sub-TS");
5834b84eec9SHong Zhang 
58419c2959aSHong Zhang   /* Only copy the DM */
5854b84eec9SHong Zhang   ierr = TSGetDM(ts,&dm);CHKERRQ(ierr);
58619c2959aSHong Zhang 
58719c2959aSHong Zhang   ierr = TSRHSSplitGetSubTS(ts,"slowbuffer",&mprk->subts_slowbuffer);CHKERRQ(ierr);
58819c2959aSHong Zhang   if (!mprk->subts_slowbuffer) {
58919c2959aSHong Zhang     mprk->subts_slowbuffer = mprk->subts_slow;
59019c2959aSHong Zhang     mprk->subts_slow       = NULL;
59119c2959aSHong Zhang   }
59219c2959aSHong Zhang   if (mprk->subts_slow) {
5934b84eec9SHong Zhang     ierr = DMClone(dm,&newdm);CHKERRQ(ierr);
5944b84eec9SHong Zhang     ierr = TSGetDM(mprk->subts_slow,&subdm);CHKERRQ(ierr);
5954b84eec9SHong Zhang     ierr = DMCopyDMTS(subdm,newdm);CHKERRQ(ierr);
5964b84eec9SHong Zhang     ierr = DMCopyDMSNES(subdm,newdm);CHKERRQ(ierr);
5974b84eec9SHong Zhang     ierr = TSSetDM(mprk->subts_slow,newdm);CHKERRQ(ierr);
5984b84eec9SHong Zhang     ierr = DMDestroy(&newdm);CHKERRQ(ierr);
59919c2959aSHong Zhang   }
60019c2959aSHong Zhang   ierr = DMClone(dm,&newdm);CHKERRQ(ierr);
60119c2959aSHong Zhang   ierr = TSGetDM(mprk->subts_slowbuffer,&subdm);CHKERRQ(ierr);
60219c2959aSHong Zhang   ierr = DMCopyDMTS(subdm,newdm);CHKERRQ(ierr);
60319c2959aSHong Zhang   ierr = DMCopyDMSNES(subdm,newdm);CHKERRQ(ierr);
60419c2959aSHong Zhang   ierr = TSSetDM(mprk->subts_slowbuffer,newdm);CHKERRQ(ierr);
60519c2959aSHong Zhang   ierr = DMDestroy(&newdm);CHKERRQ(ierr);
60619c2959aSHong Zhang 
60719c2959aSHong Zhang   ierr = DMClone(dm,&newdm);CHKERRQ(ierr);
60819c2959aSHong Zhang   ierr = TSGetDM(mprk->subts_fast,&subdm);CHKERRQ(ierr);
60919c2959aSHong Zhang   ierr = DMCopyDMTS(subdm,newdm);CHKERRQ(ierr);
61019c2959aSHong Zhang   ierr = DMCopyDMSNES(subdm,newdm);CHKERRQ(ierr);
61119c2959aSHong Zhang   ierr = TSSetDM(mprk->subts_fast,newdm);CHKERRQ(ierr);
61219c2959aSHong Zhang   ierr = DMDestroy(&newdm);CHKERRQ(ierr);
61319c2959aSHong Zhang 
61419c2959aSHong Zhang   if (tab->np == 3) {
61519c2959aSHong Zhang     ierr = TSRHSSplitGetSubTS(ts,"medium",&mprk->subts_medium);CHKERRQ(ierr);
61619c2959aSHong Zhang     ierr = TSRHSSplitGetSubTS(ts,"mediumbuffer",&mprk->subts_mediumbuffer);CHKERRQ(ierr);
61719c2959aSHong Zhang     if (mprk->subts_medium && !mprk->subts_mediumbuffer) {
61819c2959aSHong Zhang       mprk->subts_mediumbuffer = mprk->subts_medium;
61919c2959aSHong Zhang       mprk->subts_medium       = NULL;
62019c2959aSHong Zhang     }
62119c2959aSHong Zhang     if (mprk->subts_medium) {
62219c2959aSHong Zhang       ierr = DMClone(dm,&newdm);CHKERRQ(ierr);
62319c2959aSHong Zhang       ierr = TSGetDM(mprk->subts_medium,&subdm);CHKERRQ(ierr);
62419c2959aSHong Zhang       ierr = DMCopyDMTS(subdm,newdm);CHKERRQ(ierr);
62519c2959aSHong Zhang       ierr = DMCopyDMSNES(subdm,newdm);CHKERRQ(ierr);
62619c2959aSHong Zhang       ierr = TSSetDM(mprk->subts_medium,newdm);CHKERRQ(ierr);
62719c2959aSHong Zhang       ierr = DMDestroy(&newdm);CHKERRQ(ierr);
62819c2959aSHong Zhang     }
62919c2959aSHong Zhang     ierr = DMClone(dm,&newdm);CHKERRQ(ierr);
63019c2959aSHong Zhang     ierr = TSGetDM(mprk->subts_mediumbuffer,&subdm);CHKERRQ(ierr);
63119c2959aSHong Zhang     ierr = DMCopyDMTS(subdm,newdm);CHKERRQ(ierr);
63219c2959aSHong Zhang     ierr = DMCopyDMSNES(subdm,newdm);CHKERRQ(ierr);
63319c2959aSHong Zhang     ierr = TSSetDM(mprk->subts_mediumbuffer,newdm);CHKERRQ(ierr);
63419c2959aSHong Zhang     ierr = DMDestroy(&newdm);CHKERRQ(ierr);
63519c2959aSHong Zhang   }
6364b84eec9SHong Zhang   PetscFunctionReturn(0);
6374b84eec9SHong Zhang }
6384b84eec9SHong Zhang 
6394b84eec9SHong Zhang /*
6404b84eec9SHong Zhang  This if for nonsplit RHS MPRK
6414b84eec9SHong Zhang  The step completion formula is
6424b84eec9SHong Zhang 
6434b84eec9SHong Zhang  x1 = x0 + h b^T YdotRHS
6444b84eec9SHong Zhang 
6454b84eec9SHong Zhang */
6464b84eec9SHong Zhang static PetscErrorCode TSEvaluateStep_MPRK(TS ts,PetscInt order,Vec X,PetscBool *done)
6474b84eec9SHong Zhang {
6484b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
6494b84eec9SHong Zhang   MPRKTableau    tab = mprk->tableau;
6507c0df07dSHong Zhang   PetscScalar    *wf = mprk->work_fast;
6514b84eec9SHong Zhang   PetscReal      h = ts->time_step;
6524b84eec9SHong Zhang   PetscInt       s = tab->s,j;
6534b84eec9SHong Zhang   PetscErrorCode ierr;
6544b84eec9SHong Zhang 
6554b84eec9SHong Zhang   PetscFunctionBegin;
6564b84eec9SHong Zhang   for (j=0; j<s; j++) wf[j] = h*tab->bf[j];
6577c0df07dSHong Zhang   ierr = VecCopy(ts->vec_sol,X);CHKERRQ(ierr);
6587c0df07dSHong Zhang   ierr = VecMAXPY(X,s,wf,mprk->YdotRHS);CHKERRQ(ierr);
6594b84eec9SHong Zhang   PetscFunctionReturn(0);
6604b84eec9SHong Zhang }
6614b84eec9SHong Zhang 
6624b84eec9SHong Zhang static PetscErrorCode TSStep_MPRK(TS ts)
6634b84eec9SHong Zhang {
6644b84eec9SHong Zhang   TS_MPRK         *mprk = (TS_MPRK*)ts->data;
6657c0df07dSHong Zhang   Vec             *Y = mprk->Y,*YdotRHS = mprk->YdotRHS,*YdotRHS_fast = mprk->YdotRHS_fast,*YdotRHS_slow = mprk->YdotRHS_slow,*YdotRHS_slowbuffer = mprk->YdotRHS_slowbuffer;
6667c0df07dSHong Zhang   Vec             Yslow,Yslowbuffer,Yfast;
6674b84eec9SHong Zhang   MPRKTableau     tab = mprk->tableau;
6684b84eec9SHong Zhang   const PetscInt  s = tab->s;
66919c2959aSHong Zhang   const PetscReal *Af = tab->Af,*cf = tab->cf,*Asb = tab->Asb,*csb = tab->csb;
670ebd5ed4eSHong Zhang   PetscScalar     *wf = mprk->work_fast,*wsb = mprk->work_slowbuffer;
671ebd5ed4eSHong Zhang   PetscInt        i,j;
6724b84eec9SHong Zhang   PetscReal       next_time_step = ts->time_step,t = ts->ptime,h = ts->time_step;
6734b84eec9SHong Zhang   PetscErrorCode  ierr;
6744b84eec9SHong Zhang 
6754b84eec9SHong Zhang   PetscFunctionBegin;
6764b84eec9SHong Zhang   for (i=0; i<s; i++) {
6774b84eec9SHong Zhang     mprk->stage_time = t + h*cf[i];
6784b84eec9SHong Zhang     ierr = TSPreStage(ts,mprk->stage_time);CHKERRQ(ierr);
6797c0df07dSHong Zhang     ierr = VecCopy(ts->vec_sol,Y[i]);CHKERRQ(ierr);
6804b84eec9SHong Zhang 
6817c0df07dSHong Zhang     /* slow buffer region */
68219c2959aSHong Zhang     for (j=0; j<i; j++) wsb[j] = h*Asb[i*s+j];
6839849be05SHong Zhang     for (j=0; j<i; j++) {
6847c0df07dSHong Zhang       ierr = VecGetSubVector(YdotRHS[j],mprk->is_slowbuffer,&YdotRHS_slowbuffer[j]);CHKERRQ(ierr);
6857c0df07dSHong Zhang     }
6867c0df07dSHong Zhang     ierr = VecGetSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
6877c0df07dSHong Zhang     ierr = VecMAXPY(Yslowbuffer,i,wsb,mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
6887c0df07dSHong Zhang     ierr = VecRestoreSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
6899849be05SHong Zhang     for (j=0; j<i; j++) {
6907c0df07dSHong Zhang       ierr = VecRestoreSubVector(YdotRHS[j],mprk->is_slowbuffer,&YdotRHS_slowbuffer[j]);CHKERRQ(ierr);
6917c0df07dSHong Zhang     }
6927c0df07dSHong Zhang     /* slow region */
6937c0df07dSHong Zhang     if (mprk->is_slow) {
6949849be05SHong Zhang       for (j=0; j<i; j++) {
6957c0df07dSHong Zhang         ierr = VecGetSubVector(YdotRHS[j],mprk->is_slow,&YdotRHS_slow[j]);CHKERRQ(ierr);
6967c0df07dSHong Zhang       }
6977c0df07dSHong Zhang       ierr = VecGetSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
698ebd5ed4eSHong Zhang       ierr = VecMAXPY(Yslow,i,wsb,mprk->YdotRHS_slow);CHKERRQ(ierr);
6997c0df07dSHong Zhang       ierr = VecRestoreSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
700ebd5ed4eSHong Zhang       for (j=0; j<i; j++) {
7017c0df07dSHong Zhang         ierr = VecRestoreSubVector(YdotRHS[j],mprk->is_slow,&YdotRHS_slow[j]);CHKERRQ(ierr);
7027c0df07dSHong Zhang       }
7037c0df07dSHong Zhang     }
7044b84eec9SHong Zhang 
7057c0df07dSHong Zhang     /* fast region */
7064b84eec9SHong Zhang     for (j=0; j<i; j++) wf[j] = h*Af[i*s+j];
7079849be05SHong Zhang     for (j=0; j<i; j++) {
7087c0df07dSHong Zhang       ierr = VecGetSubVector(YdotRHS[j],mprk->is_fast,&YdotRHS_fast[j]);CHKERRQ(ierr);
7097c0df07dSHong Zhang     }
7107c0df07dSHong Zhang     ierr = VecGetSubVector(Y[i],mprk->is_fast,&Yfast);CHKERRQ(ierr);
7117c0df07dSHong Zhang     ierr = VecMAXPY(Yfast,i,wf,mprk->YdotRHS_fast);CHKERRQ(ierr);
7127c0df07dSHong Zhang     ierr = VecRestoreSubVector(Y[i],mprk->is_fast,&Yfast);CHKERRQ(ierr);
7139849be05SHong Zhang     for (j=0; j<i; j++) {
7147c0df07dSHong Zhang       ierr = VecRestoreSubVector(YdotRHS[j],mprk->is_fast,&YdotRHS_fast[j]);CHKERRQ(ierr);
7157c0df07dSHong Zhang     }
7167c0df07dSHong Zhang     if (tab->np == 3) {
7177c0df07dSHong Zhang       Vec         *YdotRHS_medium = mprk->YdotRHS_medium,*YdotRHS_mediumbuffer = mprk->YdotRHS_mediumbuffer;
7187c0df07dSHong Zhang       Vec         Ymedium,Ymediumbuffer;
719ebd5ed4eSHong Zhang       PetscScalar *wmb = mprk->work_mediumbuffer;
720ebd5ed4eSHong Zhang 
721ebd5ed4eSHong Zhang       for (j=0; j<i; j++) wmb[j] = h*tab->Amb[i*s+j];
7227c0df07dSHong Zhang       /* medium region */
7237c0df07dSHong Zhang       if (mprk->is_medium) {
7247c0df07dSHong Zhang         for (j=0; j<i; j++) {
7257c0df07dSHong Zhang           ierr = VecGetSubVector(YdotRHS[j],mprk->is_medium,&YdotRHS_medium[j]);CHKERRQ(ierr);
7267c0df07dSHong Zhang         }
7277c0df07dSHong Zhang         ierr = VecGetSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
728ebd5ed4eSHong Zhang         ierr = VecMAXPY(Ymedium,i,wmb,mprk->YdotRHS_medium);CHKERRQ(ierr);
7297c0df07dSHong Zhang         ierr = VecRestoreSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
730ebd5ed4eSHong Zhang         for (j=0; j<i; j++) {
7317c0df07dSHong Zhang           ierr = VecRestoreSubVector(YdotRHS[j],mprk->is_medium,&YdotRHS_medium[j]);CHKERRQ(ierr);
7327c0df07dSHong Zhang         }
7337c0df07dSHong Zhang       }
7347c0df07dSHong Zhang       /* medium buffer region */
7359849be05SHong Zhang       for (j=0; j<i; j++) {
7367c0df07dSHong Zhang         ierr = VecGetSubVector(YdotRHS[j],mprk->is_mediumbuffer,&YdotRHS_mediumbuffer[j]);CHKERRQ(ierr);
7377c0df07dSHong Zhang       }
7387c0df07dSHong Zhang       ierr = VecGetSubVector(Y[i],mprk->is_mediumbuffer,&Ymediumbuffer);CHKERRQ(ierr);
7397c0df07dSHong Zhang       ierr = VecMAXPY(Ymediumbuffer,i,wmb,mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
7407c0df07dSHong Zhang       ierr = VecRestoreSubVector(Y[i],mprk->is_mediumbuffer,&Ymediumbuffer);CHKERRQ(ierr);
7419849be05SHong Zhang       for (j=0; j<i; j++) {
7427c0df07dSHong Zhang         ierr = VecRestoreSubVector(YdotRHS[j],mprk->is_mediumbuffer,&YdotRHS_mediumbuffer[j]);CHKERRQ(ierr);
7437c0df07dSHong Zhang       }
7447c0df07dSHong Zhang     }
7454b84eec9SHong Zhang     ierr = TSPostStage(ts,mprk->stage_time,i,Y); CHKERRQ(ierr);
7464b84eec9SHong Zhang     /* compute the stage RHS by fast and slow tableau respectively */
7477c0df07dSHong Zhang     ierr = TSComputeRHSFunction(ts,t+h*csb[i],Y[i],YdotRHS[i]);CHKERRQ(ierr);
7484b84eec9SHong Zhang   }
7494b84eec9SHong Zhang   ierr = TSEvaluateStep(ts,tab->order,ts->vec_sol,NULL);CHKERRQ(ierr);
7504b84eec9SHong Zhang   ts->ptime += ts->time_step;
7514b84eec9SHong Zhang   ts->time_step = next_time_step;
7524b84eec9SHong Zhang   PetscFunctionReturn(0);
7534b84eec9SHong Zhang }
7544b84eec9SHong Zhang 
7554b84eec9SHong Zhang /*
756f944a40eSHong Zhang  This if for the case when split RHS is used
7574b84eec9SHong Zhang  The step completion formula is
7584b84eec9SHong Zhang  x1 = x0 + h b^T YdotRHS
7594b84eec9SHong Zhang */
7604b84eec9SHong Zhang static PetscErrorCode TSEvaluateStep_MPRKSPLIT(TS ts,PetscInt order,Vec X,PetscBool *done)
7614b84eec9SHong Zhang {
7624b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
7634b84eec9SHong Zhang   MPRKTableau    tab  = mprk->tableau;
76419c2959aSHong Zhang   Vec            Xslow,Xfast,Xslowbuffer; /* subvectors for slow and fast componets in X respectively */
76519c2959aSHong Zhang   PetscScalar    *wf = mprk->work_fast,*ws = mprk->work_slow,*wsb = mprk->work_slowbuffer;
7664b84eec9SHong Zhang   PetscReal      h = ts->time_step;
76779bc8a77SHong Zhang   PetscInt       s = tab->s,j,computedstages;
7684b84eec9SHong Zhang   PetscErrorCode ierr;
7694b84eec9SHong Zhang 
7704b84eec9SHong Zhang   PetscFunctionBegin;
7714b84eec9SHong Zhang   ierr = VecCopy(ts->vec_sol,X);CHKERRQ(ierr);
77219c2959aSHong Zhang 
77319c2959aSHong Zhang   /* slow region */
77419c2959aSHong Zhang   if (mprk->is_slow) {
77579bc8a77SHong Zhang     computedstages = 0;
77619c2959aSHong Zhang     for (j=0; j<s; j++) {
7779849be05SHong Zhang       if (tab->rsb[j]) ws[tab->rsb[j]-1] += h*tab->bsb[j];
77879bc8a77SHong Zhang       else ws[computedstages++] = h*tab->bsb[j];
77919c2959aSHong Zhang     }
7804b84eec9SHong Zhang     ierr = VecGetSubVector(X,mprk->is_slow,&Xslow);CHKERRQ(ierr);
78179bc8a77SHong Zhang     ierr = VecMAXPY(Xslow,computedstages,ws,mprk->YdotRHS_slow);CHKERRQ(ierr);
78219c2959aSHong Zhang     ierr = VecRestoreSubVector(X,mprk->is_slow,&Xslow);CHKERRQ(ierr);
78319c2959aSHong Zhang   }
78419c2959aSHong Zhang 
7859d6e09e9SHong Zhang   if (tab->np == 3 && mprk->is_medium) {
7869d6e09e9SHong Zhang     computedstages = 0;
7879d6e09e9SHong Zhang     for (j=0; j<s; j++) {
7889d6e09e9SHong Zhang       if (tab->rmb[j]) wsb[computedstages-tab->sbase+(tab->rmb[j]-1)%tab->sbase] += h*tab->bsb[j];
7899d6e09e9SHong Zhang       else wsb[computedstages++] = h*tab->bsb[j];
7909d6e09e9SHong Zhang     }
7919d6e09e9SHong Zhang     ierr = VecGetSubVector(X,mprk->is_slowbuffer,&Xslowbuffer);CHKERRQ(ierr);
7929d6e09e9SHong Zhang     ierr = VecMAXPY(Xslowbuffer,computedstages,wsb,mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
7939d6e09e9SHong Zhang     ierr = VecRestoreSubVector(X,mprk->is_slowbuffer,&Xslowbuffer);CHKERRQ(ierr);
7949d6e09e9SHong Zhang   } else {
79519c2959aSHong Zhang     /* slow buffer region */
79619c2959aSHong Zhang     for (j=0; j<s; j++) wsb[j] = h*tab->bsb[j];
79719c2959aSHong Zhang     ierr = VecGetSubVector(X,mprk->is_slowbuffer,&Xslowbuffer);CHKERRQ(ierr);
79819c2959aSHong Zhang     ierr = VecMAXPY(Xslowbuffer,s,wsb,mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
79919c2959aSHong Zhang     ierr = VecRestoreSubVector(X,mprk->is_slowbuffer,&Xslowbuffer);CHKERRQ(ierr);
8009d6e09e9SHong Zhang   }
80119c2959aSHong Zhang   if (tab->np == 3) {
80219c2959aSHong Zhang     Vec         Xmedium,Xmediumbuffer;
80319c2959aSHong Zhang     PetscScalar *wm = mprk->work_medium,*wmb = mprk->work_mediumbuffer;
8049d6e09e9SHong Zhang     /* medium region and slow buffer region */
80519c2959aSHong Zhang     if (mprk->is_medium) {
80679bc8a77SHong Zhang       computedstages = 0;
80719c2959aSHong Zhang       for (j=0; j<s; j++) {
80879bc8a77SHong Zhang         if (tab->rmb[j]) wm[computedstages-tab->sbase+(tab->rmb[j]-1)%tab->sbase] += h*tab->bmb[j];
80979bc8a77SHong Zhang         else wm[computedstages++] = h*tab->bmb[j];
81019c2959aSHong Zhang       }
81119c2959aSHong Zhang       ierr = VecGetSubVector(X,mprk->is_medium,&Xmedium);CHKERRQ(ierr);
81279bc8a77SHong Zhang       ierr = VecMAXPY(Xmedium,computedstages,wm,mprk->YdotRHS_medium);CHKERRQ(ierr);
81319c2959aSHong Zhang       ierr = VecRestoreSubVector(X,mprk->is_medium,&Xmedium);CHKERRQ(ierr);
81419c2959aSHong Zhang     }
81519c2959aSHong Zhang     /* medium buffer region */
81619c2959aSHong Zhang     for (j=0; j<s; j++) wmb[j] = h*tab->bmb[j];
81719c2959aSHong Zhang     ierr = VecGetSubVector(X,mprk->is_mediumbuffer,&Xmediumbuffer);CHKERRQ(ierr);
81819c2959aSHong Zhang     ierr = VecMAXPY(Xmediumbuffer,s,wmb,mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
81919c2959aSHong Zhang     ierr = VecRestoreSubVector(X,mprk->is_mediumbuffer,&Xmediumbuffer);CHKERRQ(ierr);
82019c2959aSHong Zhang   }
82119c2959aSHong Zhang   /* fast region */
82219c2959aSHong Zhang   for (j=0; j<s; j++) wf[j] = h*tab->bf[j];
8234b84eec9SHong Zhang   ierr = VecGetSubVector(X,mprk->is_fast,&Xfast);CHKERRQ(ierr);
8244b84eec9SHong Zhang   ierr = VecMAXPY(Xfast,s,wf,mprk->YdotRHS_fast);CHKERRQ(ierr);
82519c2959aSHong Zhang   ierr = VecRestoreSubVector(X,mprk->is_fast,&Xfast);CHKERRQ(ierr);
8264b84eec9SHong Zhang   PetscFunctionReturn(0);
8274b84eec9SHong Zhang }
8284b84eec9SHong Zhang 
8294b84eec9SHong Zhang static PetscErrorCode TSStep_MPRKSPLIT(TS ts)
8304b84eec9SHong Zhang {
8314b84eec9SHong Zhang   TS_MPRK         *mprk = (TS_MPRK*)ts->data;
8324b84eec9SHong Zhang   MPRKTableau     tab = mprk->tableau;
83319c2959aSHong Zhang   Vec             *Y = mprk->Y,*YdotRHS_fast = mprk->YdotRHS_fast,*YdotRHS_slow = mprk->YdotRHS_slow,*YdotRHS_slowbuffer = mprk->YdotRHS_slowbuffer;
83419c2959aSHong Zhang   Vec             Yslow,Yslowbuffer,Yfast; /* subvectors for slow and fast components in Y[i] respectively */
83519c2959aSHong Zhang   PetscInt        s = tab->s;
83619c2959aSHong Zhang   const PetscReal *Af = tab->Af,*cf = tab->cf,*Asb = tab->Asb,*csb = tab->csb;
83719c2959aSHong Zhang   PetscScalar     *wf = mprk->work_fast,*ws = mprk->work_slow,*wsb = mprk->work_slowbuffer;
83879bc8a77SHong Zhang   PetscInt        i,j,computedstages;
8394b84eec9SHong Zhang   PetscReal       next_time_step = ts->time_step,t = ts->ptime,h = ts->time_step;
8404b84eec9SHong Zhang   PetscErrorCode  ierr;
8414b84eec9SHong Zhang 
8424b84eec9SHong Zhang   PetscFunctionBegin;
8434b84eec9SHong Zhang   for (i=0; i<s; i++) {
8444b84eec9SHong Zhang     mprk->stage_time = t + h*cf[i];
8454b84eec9SHong Zhang     ierr = TSPreStage(ts,mprk->stage_time);CHKERRQ(ierr);
8464b84eec9SHong Zhang     /* calculate the stage value for fast and slow components respectively */
8474b84eec9SHong Zhang     ierr = VecCopy(ts->vec_sol,Y[i]);CHKERRQ(ierr);
84819c2959aSHong Zhang     for (j=0; j<i; j++) wsb[j] = h*Asb[i*s+j];
84919c2959aSHong Zhang 
85019c2959aSHong Zhang     /* slow buffer region */
8519d6e09e9SHong Zhang     if (tab->np == 3 && mprk->is_medium) {
8529d6e09e9SHong Zhang       if (tab->rmb[i]) {
8539d6e09e9SHong Zhang         ierr = VecGetSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
8549d6e09e9SHong Zhang         ierr = VecISCopy(Y[tab->rmb[i]-1],mprk->is_slowbuffer,SCATTER_REVERSE,Yslowbuffer);CHKERRQ(ierr);
8559d6e09e9SHong Zhang         ierr = VecRestoreSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
8569d6e09e9SHong Zhang       } else {
8579d6e09e9SHong Zhang         PetscScalar *wm = mprk->work_medium;
8589d6e09e9SHong Zhang         computedstages = 0;
8599d6e09e9SHong Zhang         for (j=0; j<i; j++) {
8609d6e09e9SHong Zhang           if (tab->rmb[j]) wm[computedstages-tab->sbase+(tab->rmb[j]-1)%tab->sbase] += wsb[j];
8619d6e09e9SHong Zhang           else wm[computedstages++] = wsb[j];
8629d6e09e9SHong Zhang         }
8639d6e09e9SHong Zhang         ierr = VecGetSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
8649d6e09e9SHong Zhang         ierr = VecMAXPY(Yslowbuffer,computedstages,wm,YdotRHS_slowbuffer);CHKERRQ(ierr);
8659d6e09e9SHong Zhang         ierr = VecRestoreSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
8669d6e09e9SHong Zhang       }
8679d6e09e9SHong Zhang     } else {
86819c2959aSHong Zhang       ierr = VecGetSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
86919c2959aSHong Zhang       ierr = VecMAXPY(Yslowbuffer,i,wsb,YdotRHS_slowbuffer);CHKERRQ(ierr);
87019c2959aSHong Zhang       ierr = VecRestoreSubVector(Y[i],mprk->is_slowbuffer,&Yslowbuffer);CHKERRQ(ierr);
8719d6e09e9SHong Zhang     }
8729849be05SHong Zhang 
87319c2959aSHong Zhang     /* slow region */
8749849be05SHong Zhang     if (mprk->is_slow) {
8759849be05SHong Zhang       if (tab->rsb[i]) { /* repeat previous stage */
8769849be05SHong Zhang         ierr = VecGetSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
8779849be05SHong Zhang         ierr = VecISCopy(Y[tab->rsb[i]-1],mprk->is_slow,SCATTER_REVERSE,Yslow);CHKERRQ(ierr);
8789849be05SHong Zhang         ierr = VecRestoreSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
8799849be05SHong Zhang       } else {
88079bc8a77SHong Zhang         computedstages = 0;
88119c2959aSHong Zhang         for (j=0; j<i; j++) {
88279bc8a77SHong Zhang           if (tab->rsb[j]) ws[tab->rsb[j]-1] += wsb[j];
88379bc8a77SHong Zhang           else ws[computedstages++] = wsb[j];
88419c2959aSHong Zhang         }
8854b84eec9SHong Zhang         ierr = VecGetSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
88679bc8a77SHong Zhang         ierr = VecMAXPY(Yslow,computedstages,ws,YdotRHS_slow);CHKERRQ(ierr);
8874b84eec9SHong Zhang         ierr = VecRestoreSubVector(Y[i],mprk->is_slow,&Yslow);CHKERRQ(ierr);
88819c2959aSHong Zhang         /* only depends on the slow buffer region */
88979bc8a77SHong Zhang         ierr = TSComputeRHSFunction(mprk->subts_slow,t+h*csb[i],Y[i],YdotRHS_slow[computedstages]);CHKERRQ(ierr);
89019c2959aSHong Zhang       }
8919849be05SHong Zhang     }
89219c2959aSHong Zhang 
89319c2959aSHong Zhang     /* fast region */
89419c2959aSHong Zhang     for (j=0; j<i; j++) wf[j] = h*Af[i*s+j];
89519c2959aSHong Zhang     ierr = VecGetSubVector(Y[i],mprk->is_fast,&Yfast);CHKERRQ(ierr);
89619c2959aSHong Zhang     ierr = VecMAXPY(Yfast,i,wf,YdotRHS_fast);CHKERRQ(ierr);
8974b84eec9SHong Zhang     ierr = VecRestoreSubVector(Y[i],mprk->is_fast,&Yfast);CHKERRQ(ierr);
89819c2959aSHong Zhang 
89919c2959aSHong Zhang     if (tab->np == 3) {
90019c2959aSHong Zhang       Vec *YdotRHS_medium = mprk->YdotRHS_medium,*YdotRHS_mediumbuffer = mprk->YdotRHS_mediumbuffer;
90119c2959aSHong Zhang       Vec Ymedium,Ymediumbuffer;
90219c2959aSHong Zhang       const PetscReal *Amb = tab->Amb,*cmb = tab->cmb;
90319c2959aSHong Zhang       PetscScalar *wm = mprk->work_medium,*wmb = mprk->work_mediumbuffer;
90419c2959aSHong Zhang 
90519c2959aSHong Zhang       for (j=0; j<i; j++) wmb[j] = h*Amb[i*s+j];
90619c2959aSHong Zhang       /* medium buffer region */
90719c2959aSHong Zhang       ierr = VecGetSubVector(Y[i],mprk->is_mediumbuffer,&Ymediumbuffer);CHKERRQ(ierr);
90819c2959aSHong Zhang       ierr = VecMAXPY(Ymediumbuffer,i,wmb,YdotRHS_mediumbuffer);CHKERRQ(ierr);
90919c2959aSHong Zhang       ierr = VecRestoreSubVector(Y[i],mprk->is_mediumbuffer,&Ymediumbuffer);CHKERRQ(ierr);
91019c2959aSHong Zhang       /* medium region */
91179bc8a77SHong Zhang       if (mprk->is_medium) {
91279bc8a77SHong Zhang         if (tab->rmb[i]) { /* repeat previous stage */
91379bc8a77SHong Zhang           ierr = VecGetSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
91479bc8a77SHong Zhang           ierr = VecISCopy(Y[tab->rmb[i]-1],mprk->is_medium,SCATTER_REVERSE,Ymedium);CHKERRQ(ierr);
91519c2959aSHong Zhang           ierr = VecRestoreSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
91679bc8a77SHong Zhang         } else {
91779bc8a77SHong Zhang           computedstages = 0;
91879bc8a77SHong Zhang           for (j=0; j<i; j++) {
91979bc8a77SHong Zhang             if (tab->rmb[j]) wm[computedstages-tab->sbase+(tab->rmb[j]-1)%tab->sbase] += wmb[j];
92079bc8a77SHong Zhang             else wm[computedstages++] = wmb[j];
92179bc8a77SHong Zhang 
92279bc8a77SHong Zhang           }
92379bc8a77SHong Zhang           ierr = VecGetSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
92479bc8a77SHong Zhang           ierr = VecMAXPY(Ymedium,computedstages,wm,YdotRHS_medium);CHKERRQ(ierr);
92579bc8a77SHong Zhang           ierr = VecRestoreSubVector(Y[i],mprk->is_medium,&Ymedium);CHKERRQ(ierr);
92679bc8a77SHong Zhang           /* only depends on the medium buffer region */
92779bc8a77SHong Zhang           ierr = TSComputeRHSFunction(mprk->subts_medium,t+h*cmb[i],Y[i],YdotRHS_medium[computedstages]);CHKERRQ(ierr);
9289d6e09e9SHong Zhang           /* must be computed after all regions are updated in Y */
9299d6e09e9SHong Zhang           ierr = TSComputeRHSFunction(mprk->subts_slowbuffer,t+h*csb[i],Y[i],YdotRHS_slowbuffer[computedstages]);CHKERRQ(ierr);
93079bc8a77SHong Zhang         }
93119c2959aSHong Zhang       }
93219c2959aSHong Zhang       /* must be computed after fast region and slow region are updated in Y */
93319c2959aSHong Zhang       ierr = TSComputeRHSFunction(mprk->subts_mediumbuffer,t+h*cmb[i],Y[i],YdotRHS_mediumbuffer[i]);CHKERRQ(ierr);
93419c2959aSHong Zhang     }
9359d6e09e9SHong Zhang     if (!(tab->np == 3 && mprk->is_medium)) {
93619c2959aSHong Zhang       ierr = TSComputeRHSFunction(mprk->subts_slowbuffer,t+h*csb[i],Y[i],YdotRHS_slowbuffer[i]);CHKERRQ(ierr);
9379d6e09e9SHong Zhang     }
938bf0cca7dSHong Zhang     ierr = TSComputeRHSFunction(mprk->subts_fast,t+h*cf[i],Y[i],YdotRHS_fast[i]);CHKERRQ(ierr);
9394b84eec9SHong Zhang   }
94079bc8a77SHong Zhang 
9414b84eec9SHong Zhang   ierr = TSEvaluateStep(ts,tab->order,ts->vec_sol,NULL);CHKERRQ(ierr);
9424b84eec9SHong Zhang   ts->ptime += ts->time_step;
9434b84eec9SHong Zhang   ts->time_step = next_time_step;
9444b84eec9SHong Zhang   PetscFunctionReturn(0);
9454b84eec9SHong Zhang }
9464b84eec9SHong Zhang 
9474b84eec9SHong Zhang static PetscErrorCode TSMPRKTableauReset(TS ts)
9484b84eec9SHong Zhang {
9494b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
9504b84eec9SHong Zhang   MPRKTableau    tab = mprk->tableau;
9514b84eec9SHong Zhang   PetscErrorCode ierr;
9524b84eec9SHong Zhang 
9534b84eec9SHong Zhang   PetscFunctionBegin;
9544b84eec9SHong Zhang   if (!tab) PetscFunctionReturn(0);
9554b84eec9SHong Zhang   ierr = PetscFree(mprk->work_fast);CHKERRQ(ierr);
9564b84eec9SHong Zhang   ierr = PetscFree(mprk->work_slow);CHKERRQ(ierr);
9577c0df07dSHong Zhang   ierr = PetscFree(mprk->work_slowbuffer);CHKERRQ(ierr);
9587c0df07dSHong Zhang   ierr = PetscFree(mprk->work_medium);CHKERRQ(ierr);
9597c0df07dSHong Zhang   ierr = PetscFree(mprk->work_mediumbuffer);CHKERRQ(ierr);
9604b84eec9SHong Zhang   ierr = VecDestroyVecs(tab->s,&mprk->Y);CHKERRQ(ierr);
9610fe4d17eSHong Zhang   if (ts->use_splitrhsfunction) {
9620fe4d17eSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS_fast);CHKERRQ(ierr);
9630fe4d17eSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS_slow);CHKERRQ(ierr);
9640fe4d17eSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
9650fe4d17eSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS_medium);CHKERRQ(ierr);
9660fe4d17eSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
9670fe4d17eSHong Zhang   } else {
9687c0df07dSHong Zhang     ierr = VecDestroyVecs(tab->s,&mprk->YdotRHS);CHKERRQ(ierr);
9697c0df07dSHong Zhang     if (mprk->is_slow) {
9707c0df07dSHong Zhang       ierr = PetscFree(mprk->YdotRHS_slow);CHKERRQ(ierr);
9714b84eec9SHong Zhang     }
9727c0df07dSHong Zhang     ierr = PetscFree(mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
9737c0df07dSHong Zhang     if (tab->np == 3) {
9747c0df07dSHong Zhang       if (mprk->is_medium) {
9757c0df07dSHong Zhang         ierr = PetscFree(mprk->YdotRHS_medium);CHKERRQ(ierr);
9767c0df07dSHong Zhang       }
9777c0df07dSHong Zhang       ierr = PetscFree(mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
9787c0df07dSHong Zhang     }
9797c0df07dSHong Zhang     ierr = PetscFree(mprk->YdotRHS_fast);CHKERRQ(ierr);
9807c0df07dSHong Zhang   }
9814b84eec9SHong Zhang   PetscFunctionReturn(0);
9824b84eec9SHong Zhang }
9834b84eec9SHong Zhang 
9844b84eec9SHong Zhang static PetscErrorCode TSReset_MPRK(TS ts)
9854b84eec9SHong Zhang {
9864b84eec9SHong Zhang   PetscErrorCode ierr;
9874b84eec9SHong Zhang 
9884b84eec9SHong Zhang   PetscFunctionBegin;
9894b84eec9SHong Zhang   ierr = TSMPRKTableauReset(ts);CHKERRQ(ierr);
9904b84eec9SHong Zhang   PetscFunctionReturn(0);
9914b84eec9SHong Zhang }
9924b84eec9SHong Zhang 
9934b84eec9SHong Zhang static PetscErrorCode DMCoarsenHook_TSMPRK(DM fine,DM coarse,void *ctx)
9944b84eec9SHong Zhang {
9954b84eec9SHong Zhang   PetscFunctionBegin;
9964b84eec9SHong Zhang   PetscFunctionReturn(0);
9974b84eec9SHong Zhang }
9984b84eec9SHong Zhang 
9994b84eec9SHong Zhang static PetscErrorCode DMRestrictHook_TSMPRK(DM fine,Mat restrct,Vec rscale,Mat inject,DM coarse,void *ctx)
10004b84eec9SHong Zhang {
10014b84eec9SHong Zhang   PetscFunctionBegin;
10024b84eec9SHong Zhang   PetscFunctionReturn(0);
10034b84eec9SHong Zhang }
10044b84eec9SHong Zhang 
10054b84eec9SHong Zhang static PetscErrorCode DMSubDomainHook_TSMPRK(DM dm,DM subdm,void *ctx)
10064b84eec9SHong Zhang {
10074b84eec9SHong Zhang   PetscFunctionBegin;
10084b84eec9SHong Zhang   PetscFunctionReturn(0);
10094b84eec9SHong Zhang }
10104b84eec9SHong Zhang 
10114b84eec9SHong Zhang static PetscErrorCode DMSubDomainRestrictHook_TSMPRK(DM dm,VecScatter gscat,VecScatter lscat,DM subdm,void *ctx)
10124b84eec9SHong Zhang {
10134b84eec9SHong Zhang   PetscFunctionBegin;
10144b84eec9SHong Zhang   PetscFunctionReturn(0);
10154b84eec9SHong Zhang }
10164b84eec9SHong Zhang 
10174b84eec9SHong Zhang static PetscErrorCode TSMPRKTableauSetUp(TS ts)
10184b84eec9SHong Zhang {
10194b84eec9SHong Zhang   TS_MPRK        *mprk  = (TS_MPRK*)ts->data;
10204b84eec9SHong Zhang   MPRKTableau    tab = mprk->tableau;
102119c2959aSHong Zhang   Vec            YdotRHS_slow,YdotRHS_slowbuffer,YdotRHS_medium,YdotRHS_mediumbuffer,YdotRHS_fast;
10224b84eec9SHong Zhang   PetscErrorCode ierr;
10234b84eec9SHong Zhang 
10244b84eec9SHong Zhang   PetscFunctionBegin;
10254b84eec9SHong Zhang   ierr = VecDuplicateVecs(ts->vec_sol,tab->s,&mprk->Y);CHKERRQ(ierr);
10267c0df07dSHong Zhang   if (mprk->is_slow) {
102719c2959aSHong Zhang     ierr = PetscMalloc1(tab->s,&mprk->work_slow);CHKERRQ(ierr);
10284b84eec9SHong Zhang   }
10297c0df07dSHong Zhang   ierr = PetscMalloc1(tab->s,&mprk->work_slowbuffer);CHKERRQ(ierr);
10307c0df07dSHong Zhang   if (tab->np == 3) {
10317c0df07dSHong Zhang     if (mprk->is_medium) {
10327c0df07dSHong Zhang       ierr = PetscMalloc1(tab->s,&mprk->work_medium);CHKERRQ(ierr);
10337c0df07dSHong Zhang     }
10347c0df07dSHong Zhang     ierr = PetscMalloc1(tab->s,&mprk->work_mediumbuffer);CHKERRQ(ierr);
10357c0df07dSHong Zhang   }
10367c0df07dSHong Zhang   ierr = PetscMalloc1(tab->s,&mprk->work_fast);CHKERRQ(ierr);
10377c0df07dSHong Zhang 
10380fe4d17eSHong Zhang   if (ts->use_splitrhsfunction) {
103919c2959aSHong Zhang     if (mprk->is_slow) {
10404b84eec9SHong Zhang       ierr = VecGetSubVector(ts->vec_sol,mprk->is_slow,&YdotRHS_slow);CHKERRQ(ierr);
10414b84eec9SHong Zhang       ierr = VecDuplicateVecs(YdotRHS_slow,tab->s,&mprk->YdotRHS_slow);CHKERRQ(ierr);
10424b84eec9SHong Zhang       ierr = VecRestoreSubVector(ts->vec_sol,mprk->is_slow,&YdotRHS_slow);CHKERRQ(ierr);
104319c2959aSHong Zhang     }
104419c2959aSHong Zhang     ierr = VecGetSubVector(ts->vec_sol,mprk->is_slowbuffer,&YdotRHS_slowbuffer);CHKERRQ(ierr);
104519c2959aSHong Zhang     ierr = VecDuplicateVecs(YdotRHS_slowbuffer,tab->s,&mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
104619c2959aSHong Zhang     ierr = VecRestoreSubVector(ts->vec_sol,mprk->is_slowbuffer,&YdotRHS_slowbuffer);CHKERRQ(ierr);
104719c2959aSHong Zhang     if (tab->np == 3) {
104819c2959aSHong Zhang       if (mprk->is_medium) {
104919c2959aSHong Zhang         ierr = VecGetSubVector(ts->vec_sol,mprk->is_medium,&YdotRHS_medium);CHKERRQ(ierr);
105019c2959aSHong Zhang         ierr = VecDuplicateVecs(YdotRHS_medium,tab->s,&mprk->YdotRHS_medium);CHKERRQ(ierr);
105119c2959aSHong Zhang         ierr = VecRestoreSubVector(ts->vec_sol,mprk->is_medium,&YdotRHS_medium);CHKERRQ(ierr);
105219c2959aSHong Zhang       }
105319c2959aSHong Zhang       ierr = VecGetSubVector(ts->vec_sol,mprk->is_mediumbuffer,&YdotRHS_mediumbuffer);CHKERRQ(ierr);
105419c2959aSHong Zhang       ierr = VecDuplicateVecs(YdotRHS_mediumbuffer,tab->s,&mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
105519c2959aSHong Zhang       ierr = VecRestoreSubVector(ts->vec_sol,mprk->is_mediumbuffer,&YdotRHS_mediumbuffer);CHKERRQ(ierr);
105619c2959aSHong Zhang     }
105719c2959aSHong Zhang     ierr = VecGetSubVector(ts->vec_sol,mprk->is_fast,&YdotRHS_fast);CHKERRQ(ierr);
105819c2959aSHong Zhang     ierr = VecDuplicateVecs(YdotRHS_fast,tab->s,&mprk->YdotRHS_fast);CHKERRQ(ierr);
10594b84eec9SHong Zhang     ierr = VecRestoreSubVector(ts->vec_sol,mprk->is_fast,&YdotRHS_fast);CHKERRQ(ierr);
10600fe4d17eSHong Zhang   } else {
10610fe4d17eSHong Zhang     ierr = VecDuplicateVecs(ts->vec_sol,tab->s,&mprk->YdotRHS);CHKERRQ(ierr);
10620fe4d17eSHong Zhang     if (mprk->is_slow) {
10630fe4d17eSHong Zhang       ierr = PetscMalloc1(tab->s,&mprk->YdotRHS_slow);CHKERRQ(ierr);
10640fe4d17eSHong Zhang     }
10650fe4d17eSHong Zhang     ierr = PetscMalloc1(tab->s,&mprk->YdotRHS_slowbuffer);CHKERRQ(ierr);
10660fe4d17eSHong Zhang     if (tab->np == 3) {
10670fe4d17eSHong Zhang       if (mprk->is_medium) {
10680fe4d17eSHong Zhang         ierr = PetscMalloc1(tab->s,&mprk->YdotRHS_medium);CHKERRQ(ierr);
10690fe4d17eSHong Zhang       }
10700fe4d17eSHong Zhang       ierr = PetscMalloc1(tab->s,&mprk->YdotRHS_mediumbuffer);CHKERRQ(ierr);
10710fe4d17eSHong Zhang     }
10720fe4d17eSHong Zhang     ierr = PetscMalloc1(tab->s,&mprk->YdotRHS_fast);CHKERRQ(ierr);
10734b84eec9SHong Zhang   }
10744b84eec9SHong Zhang   PetscFunctionReturn(0);
10754b84eec9SHong Zhang }
10764b84eec9SHong Zhang 
10774b84eec9SHong Zhang static PetscErrorCode TSSetUp_MPRK(TS ts)
10784b84eec9SHong Zhang {
10794b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
108019c2959aSHong Zhang   MPRKTableau    tab = mprk->tableau;
10814b84eec9SHong Zhang   DM             dm;
10824b84eec9SHong Zhang   PetscErrorCode ierr;
10834b84eec9SHong Zhang 
10844b84eec9SHong Zhang   PetscFunctionBegin;
10854b84eec9SHong Zhang   ierr = TSRHSSplitGetIS(ts,"slow",&mprk->is_slow);CHKERRQ(ierr);
10864b84eec9SHong Zhang   ierr = TSRHSSplitGetIS(ts,"fast",&mprk->is_fast);CHKERRQ(ierr);
108719c2959aSHong Zhang   if (!mprk->is_slow || !mprk->is_fast) SETERRQ1(PetscObjectComm((PetscObject)ts),PETSC_ERR_USER,"Must set up RHSSplits with TSRHSSplitSetIS() using split names 'slow' and 'fast' respectively in order to use the method '%s'",tab->name);
108819c2959aSHong Zhang 
108919c2959aSHong Zhang   if (tab->np == 3) {
109019c2959aSHong Zhang     ierr = TSRHSSplitGetIS(ts,"medium",&mprk->is_medium);CHKERRQ(ierr);
109119c2959aSHong Zhang     if (!mprk->is_medium) SETERRQ1(PetscObjectComm((PetscObject)ts),PETSC_ERR_USER,"Must set up RHSSplits with TSRHSSplitSetIS() using split names 'slow' and 'medium' and 'fast' respectively in order to use the method '%s'",tab->name);
109219c2959aSHong Zhang     ierr = TSRHSSplitGetIS(ts,"mediumbuffer",&mprk->is_mediumbuffer);CHKERRQ(ierr);
109319c2959aSHong Zhang     if (!mprk->is_mediumbuffer) { /* let medium buffer cover whole medium region */
109419c2959aSHong Zhang       mprk->is_mediumbuffer = mprk->is_medium;
109519c2959aSHong Zhang       mprk->is_medium = NULL;
109619c2959aSHong Zhang     }
109719c2959aSHong Zhang   }
109819c2959aSHong Zhang 
109919c2959aSHong Zhang   /* If users do not provide buffer region settings, the solver will do them automatically, but with a performance penalty */
110019c2959aSHong Zhang   ierr = TSRHSSplitGetIS(ts,"slowbuffer",&mprk->is_slowbuffer);CHKERRQ(ierr);
110119c2959aSHong Zhang   if (!mprk->is_slowbuffer) { /* let slow buffer cover whole slow region */
110219c2959aSHong Zhang     mprk->is_slowbuffer = mprk->is_slow;
110319c2959aSHong Zhang     mprk->is_slow = NULL;
110419c2959aSHong Zhang   }
11054b84eec9SHong Zhang   ierr = TSCheckImplicitTerm(ts);CHKERRQ(ierr);
11064b84eec9SHong Zhang   ierr = TSMPRKTableauSetUp(ts);CHKERRQ(ierr);
11074b84eec9SHong Zhang   ierr = TSGetDM(ts,&dm);CHKERRQ(ierr);
11084b84eec9SHong Zhang   ierr = DMCoarsenHookAdd(dm,DMCoarsenHook_TSMPRK,DMRestrictHook_TSMPRK,ts);CHKERRQ(ierr);
11094b84eec9SHong Zhang   ierr = DMSubDomainHookAdd(dm,DMSubDomainHook_TSMPRK,DMSubDomainRestrictHook_TSMPRK,ts);CHKERRQ(ierr);
11100fe4d17eSHong Zhang   if (ts->use_splitrhsfunction) {
11110fe4d17eSHong Zhang     ts->ops->step         = TSStep_MPRKSPLIT;
11120fe4d17eSHong Zhang     ts->ops->evaluatestep = TSEvaluateStep_MPRKSPLIT;
11130fe4d17eSHong Zhang     ierr = TSMPRKSetSplits(ts);CHKERRQ(ierr);
11140fe4d17eSHong Zhang   } else {
11150fe4d17eSHong Zhang     ts->ops->step         = TSStep_MPRK;
11160fe4d17eSHong Zhang     ts->ops->evaluatestep = TSEvaluateStep_MPRK;
11170fe4d17eSHong Zhang   }
11184b84eec9SHong Zhang   PetscFunctionReturn(0);
11194b84eec9SHong Zhang }
11204b84eec9SHong Zhang 
11214b84eec9SHong Zhang static PetscErrorCode TSSetFromOptions_MPRK(PetscOptionItems *PetscOptionsObject,TS ts)
11224b84eec9SHong Zhang {
11234b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
11244b84eec9SHong Zhang   PetscErrorCode ierr;
11254b84eec9SHong Zhang 
11264b84eec9SHong Zhang   PetscFunctionBegin;
11274b84eec9SHong Zhang   ierr = PetscOptionsHead(PetscOptionsObject,"PRK ODE solver options");CHKERRQ(ierr);
11284b84eec9SHong Zhang   {
11294b84eec9SHong Zhang     MPRKTableauLink link;
11304b84eec9SHong Zhang     PetscInt        count,choice;
11314b84eec9SHong Zhang     PetscBool       flg;
11324b84eec9SHong Zhang     const char      **namelist;
11334b84eec9SHong Zhang     for (link=MPRKTableauList,count=0; link; link=link->next,count++) ;
11344b84eec9SHong Zhang     ierr = PetscMalloc1(count,(char***)&namelist);CHKERRQ(ierr);
11354b84eec9SHong Zhang     for (link=MPRKTableauList,count=0; link; link=link->next,count++) namelist[count] = link->tab.name;
11364b84eec9SHong Zhang     ierr = PetscOptionsEList("-ts_mprk_type","Family of MPRK method","TSMPRKSetType",(const char*const*)namelist,count,mprk->tableau->name,&choice,&flg);CHKERRQ(ierr);
11374b84eec9SHong Zhang     if (flg) {ierr = TSMPRKSetType(ts,namelist[choice]);CHKERRQ(ierr);}
11384b84eec9SHong Zhang     ierr = PetscFree(namelist);CHKERRQ(ierr);
11394b84eec9SHong Zhang   }
11404b84eec9SHong Zhang   ierr = PetscOptionsTail();CHKERRQ(ierr);
11414b84eec9SHong Zhang   PetscFunctionReturn(0);
11424b84eec9SHong Zhang }
11434b84eec9SHong Zhang 
11444b84eec9SHong Zhang static PetscErrorCode TSView_MPRK(TS ts,PetscViewer viewer)
11454b84eec9SHong Zhang {
11464b84eec9SHong Zhang   TS_MPRK        *mprk = (TS_MPRK*)ts->data;
11474b84eec9SHong Zhang   PetscBool      iascii;
11484b84eec9SHong Zhang   PetscErrorCode ierr;
11494b84eec9SHong Zhang 
11504b84eec9SHong Zhang   PetscFunctionBegin;
11514b84eec9SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
11524b84eec9SHong Zhang   if (iascii) {
11534b84eec9SHong Zhang     MPRKTableau tab  = mprk->tableau;
11544b84eec9SHong Zhang     TSMPRKType  mprktype;
11554b84eec9SHong Zhang     char        fbuf[512];
11564b84eec9SHong Zhang     char        sbuf[512];
115719c2959aSHong Zhang     PetscInt    i;
11584b84eec9SHong Zhang     ierr = TSMPRKGetType(ts,&mprktype);CHKERRQ(ierr);
11594b84eec9SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  MPRK type %s\n",mprktype);CHKERRQ(ierr);
11604b84eec9SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  Order: %D\n",tab->order);CHKERRQ(ierr);
116119c2959aSHong Zhang 
11624b84eec9SHong Zhang     ierr = PetscFormatRealArray(fbuf,sizeof(fbuf),"% 8.6f",tab->s,tab->cf);CHKERRQ(ierr);
11634b84eec9SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  Abscissa cf = %s\n",fbuf);CHKERRQ(ierr);
116419c2959aSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  Af = \n");CHKERRQ(ierr);
116519c2959aSHong Zhang     for (i=0; i<tab->s; i++) {
116619c2959aSHong Zhang       ierr = PetscFormatRealArray(fbuf,sizeof(fbuf),"% 8.6f",tab->s,&tab->Af[i*tab->s]);CHKERRQ(ierr);
116719c2959aSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"    %s\n",fbuf);CHKERRQ(ierr);
116819c2959aSHong Zhang     }
116919c2959aSHong Zhang     ierr = PetscFormatRealArray(fbuf,sizeof(fbuf),"% 8.6f",tab->s,tab->bf);CHKERRQ(ierr);
117019c2959aSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  bf = %s\n",fbuf);CHKERRQ(ierr);
117119c2959aSHong Zhang 
117219c2959aSHong Zhang     ierr = PetscFormatRealArray(sbuf,sizeof(sbuf),"% 8.6f",tab->s,tab->csb);CHKERRQ(ierr);
117319c2959aSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  Abscissa csb = %s\n",sbuf);CHKERRQ(ierr);
117419c2959aSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  Asb = \n");CHKERRQ(ierr);
117519c2959aSHong Zhang     for (i=0; i<tab->s; i++) {
117619c2959aSHong Zhang       ierr = PetscFormatRealArray(sbuf,sizeof(sbuf),"% 8.6f",tab->s,&tab->Asb[i*tab->s]);CHKERRQ(ierr);
117719c2959aSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"    %s\n",sbuf);CHKERRQ(ierr);
117819c2959aSHong Zhang     }
117919c2959aSHong Zhang     ierr = PetscFormatRealArray(sbuf,sizeof(sbuf),"% 8.6f",tab->s,tab->bsb);CHKERRQ(ierr);
118019c2959aSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"  bsb = %s\n",sbuf);CHKERRQ(ierr);
118119c2959aSHong Zhang 
118219c2959aSHong Zhang     if (tab->np == 3) {
118319c2959aSHong Zhang       char mbuf[512];
118419c2959aSHong Zhang       ierr = PetscFormatRealArray(mbuf,sizeof(mbuf),"% 8.6f",tab->s,tab->cmb);CHKERRQ(ierr);
118519c2959aSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  Abscissa cmb = %s\n",mbuf);CHKERRQ(ierr);
118619c2959aSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  Amb = \n");CHKERRQ(ierr);
118719c2959aSHong Zhang       for (i=0; i<tab->s; i++) {
118819c2959aSHong Zhang         ierr = PetscFormatRealArray(mbuf,sizeof(mbuf),"% 8.6f",tab->s,&tab->Amb[i*tab->s]);CHKERRQ(ierr);
118919c2959aSHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"    %s\n",mbuf);CHKERRQ(ierr);
119019c2959aSHong Zhang       }
119119c2959aSHong Zhang       ierr = PetscFormatRealArray(mbuf,sizeof(mbuf),"% 8.6f",tab->s,tab->bmb);CHKERRQ(ierr);
119219c2959aSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  bmb = %s\n",mbuf);CHKERRQ(ierr);
119319c2959aSHong Zhang     }
11944b84eec9SHong Zhang   }
11954b84eec9SHong Zhang   PetscFunctionReturn(0);
11964b84eec9SHong Zhang }
11974b84eec9SHong Zhang 
11984b84eec9SHong Zhang static PetscErrorCode TSLoad_MPRK(TS ts,PetscViewer viewer)
11994b84eec9SHong Zhang {
12004b84eec9SHong Zhang   PetscErrorCode ierr;
12014b84eec9SHong Zhang   TSAdapt        adapt;
12024b84eec9SHong Zhang 
12034b84eec9SHong Zhang   PetscFunctionBegin;
12044b84eec9SHong Zhang   ierr = TSGetAdapt(ts,&adapt);CHKERRQ(ierr);
12054b84eec9SHong Zhang   ierr = TSAdaptLoad(adapt,viewer);CHKERRQ(ierr);
12064b84eec9SHong Zhang   PetscFunctionReturn(0);
12074b84eec9SHong Zhang }
12084b84eec9SHong Zhang 
12094b84eec9SHong Zhang /*@C
12104b84eec9SHong Zhang   TSMPRKSetType - Set the type of MPRK scheme
12114b84eec9SHong Zhang 
12120fe4d17eSHong Zhang   Not collective
12134b84eec9SHong Zhang 
12144b84eec9SHong Zhang   Input Parameter:
12154b84eec9SHong Zhang +  ts - timestepping context
12164b84eec9SHong Zhang -  mprktype - type of MPRK-scheme
12174b84eec9SHong Zhang 
12184b84eec9SHong Zhang   Options Database:
12194b84eec9SHong Zhang .   -ts_mprk_type - <pm2,p2,p3>
12204b84eec9SHong Zhang 
12214b84eec9SHong Zhang   Level: intermediate
12224b84eec9SHong Zhang 
12234b84eec9SHong Zhang .seealso: TSMPRKGetType(), TSMPRK, TSMPRKType
12244b84eec9SHong Zhang @*/
12254b84eec9SHong Zhang PetscErrorCode TSMPRKSetType(TS ts,TSMPRKType mprktype)
12264b84eec9SHong Zhang {
12274b84eec9SHong Zhang   PetscErrorCode ierr;
12284b84eec9SHong Zhang 
12294b84eec9SHong Zhang   PetscFunctionBegin;
12304b84eec9SHong Zhang   PetscValidHeaderSpecific(ts,TS_CLASSID,1);
12314b84eec9SHong Zhang   PetscValidCharPointer(mprktype,2);
12324b84eec9SHong Zhang   ierr = PetscTryMethod(ts,"TSMPRKSetType_C",(TS,TSMPRKType),(ts,mprktype));CHKERRQ(ierr);
12334b84eec9SHong Zhang   PetscFunctionReturn(0);
12344b84eec9SHong Zhang }
12354b84eec9SHong Zhang 
12364b84eec9SHong Zhang /*@C
12374b84eec9SHong Zhang   TSMPRKGetType - Get the type of MPRK scheme
12384b84eec9SHong Zhang 
12390fe4d17eSHong Zhang   Not collective
12404b84eec9SHong Zhang 
12414b84eec9SHong Zhang   Input Parameter:
12424b84eec9SHong Zhang .  ts - timestepping context
12434b84eec9SHong Zhang 
12444b84eec9SHong Zhang   Output Parameter:
12454b84eec9SHong Zhang .  mprktype - type of MPRK-scheme
12464b84eec9SHong Zhang 
12474b84eec9SHong Zhang   Level: intermediate
12484b84eec9SHong Zhang 
12494b84eec9SHong Zhang .seealso: TSMPRKGetType()
12504b84eec9SHong Zhang @*/
12514b84eec9SHong Zhang PetscErrorCode TSMPRKGetType(TS ts,TSMPRKType *mprktype)
12524b84eec9SHong Zhang {
12534b84eec9SHong Zhang   PetscErrorCode ierr;
12544b84eec9SHong Zhang 
12554b84eec9SHong Zhang   PetscFunctionBegin;
12564b84eec9SHong Zhang   PetscValidHeaderSpecific(ts,TS_CLASSID,1);
12574b84eec9SHong Zhang   ierr = PetscUseMethod(ts,"TSMPRKGetType_C",(TS,TSMPRKType*),(ts,mprktype));CHKERRQ(ierr);
12584b84eec9SHong Zhang   PetscFunctionReturn(0);
12594b84eec9SHong Zhang }
12604b84eec9SHong Zhang 
12614b84eec9SHong Zhang static PetscErrorCode TSMPRKGetType_MPRK(TS ts,TSMPRKType *mprktype)
12624b84eec9SHong Zhang {
12634b84eec9SHong Zhang   TS_MPRK *mprk = (TS_MPRK*)ts->data;
12644b84eec9SHong Zhang 
12654b84eec9SHong Zhang   PetscFunctionBegin;
12664b84eec9SHong Zhang   *mprktype = mprk->tableau->name;
12674b84eec9SHong Zhang   PetscFunctionReturn(0);
12684b84eec9SHong Zhang }
12694b84eec9SHong Zhang 
12704b84eec9SHong Zhang static PetscErrorCode TSMPRKSetType_MPRK(TS ts,TSMPRKType mprktype)
12714b84eec9SHong Zhang {
12724b84eec9SHong Zhang   TS_MPRK         *mprk = (TS_MPRK*)ts->data;
12734b84eec9SHong Zhang   PetscBool       match;
12744b84eec9SHong Zhang   MPRKTableauLink link;
12754b84eec9SHong Zhang   PetscErrorCode  ierr;
12764b84eec9SHong Zhang 
12774b84eec9SHong Zhang   PetscFunctionBegin;
12784b84eec9SHong Zhang   if (mprk->tableau) {
12794b84eec9SHong Zhang     ierr = PetscStrcmp(mprk->tableau->name,mprktype,&match);CHKERRQ(ierr);
12804b84eec9SHong Zhang     if (match) PetscFunctionReturn(0);
12814b84eec9SHong Zhang   }
12824b84eec9SHong Zhang   for (link = MPRKTableauList; link; link=link->next) {
12834b84eec9SHong Zhang     ierr = PetscStrcmp(link->tab.name,mprktype,&match);CHKERRQ(ierr);
12844b84eec9SHong Zhang     if (match) {
12854b84eec9SHong Zhang       if (ts->setupcalled) {ierr = TSMPRKTableauReset(ts);CHKERRQ(ierr);}
12864b84eec9SHong Zhang       mprk->tableau = &link->tab;
12874b84eec9SHong Zhang       if (ts->setupcalled) {ierr = TSMPRKTableauSetUp(ts);CHKERRQ(ierr);}
12884b84eec9SHong Zhang       PetscFunctionReturn(0);
12894b84eec9SHong Zhang     }
12904b84eec9SHong Zhang   }
12914b84eec9SHong Zhang   SETERRQ1(PetscObjectComm((PetscObject)ts),PETSC_ERR_ARG_UNKNOWN_TYPE,"Could not find '%s'",mprktype);
12924b84eec9SHong Zhang   PetscFunctionReturn(0);
12934b84eec9SHong Zhang }
12944b84eec9SHong Zhang 
12954b84eec9SHong Zhang static PetscErrorCode TSGetStages_MPRK(TS ts,PetscInt *ns,Vec **Y)
12964b84eec9SHong Zhang {
12974b84eec9SHong Zhang   TS_MPRK *mprk = (TS_MPRK*)ts->data;
12984b84eec9SHong Zhang 
12994b84eec9SHong Zhang   PetscFunctionBegin;
13004b84eec9SHong Zhang   *ns = mprk->tableau->s;
13014b84eec9SHong Zhang   if (Y) *Y = mprk->Y;
13024b84eec9SHong Zhang   PetscFunctionReturn(0);
13034b84eec9SHong Zhang }
13044b84eec9SHong Zhang 
13054b84eec9SHong Zhang static PetscErrorCode TSDestroy_MPRK(TS ts)
13064b84eec9SHong Zhang {
13074b84eec9SHong Zhang   PetscErrorCode ierr;
13084b84eec9SHong Zhang 
13094b84eec9SHong Zhang   PetscFunctionBegin;
13104b84eec9SHong Zhang   ierr = TSReset_MPRK(ts);CHKERRQ(ierr);
13114b84eec9SHong Zhang   if (ts->dm) {
13124b84eec9SHong Zhang     ierr = DMCoarsenHookRemove(ts->dm,DMCoarsenHook_TSMPRK,DMRestrictHook_TSMPRK,ts);CHKERRQ(ierr);
13134b84eec9SHong Zhang     ierr = DMSubDomainHookRemove(ts->dm,DMSubDomainHook_TSMPRK,DMSubDomainRestrictHook_TSMPRK,ts);CHKERRQ(ierr);
13144b84eec9SHong Zhang   }
13154b84eec9SHong Zhang   ierr = PetscFree(ts->data);CHKERRQ(ierr);
13164b84eec9SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSMPRKGetType_C",NULL);CHKERRQ(ierr);
13174b84eec9SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSMPRKSetType_C",NULL);CHKERRQ(ierr);
13184b84eec9SHong Zhang   PetscFunctionReturn(0);
13194b84eec9SHong Zhang }
13204b84eec9SHong Zhang 
13214b84eec9SHong Zhang /*MC
1322f944a40eSHong Zhang       TSMPRK - ODE solver using Multirate Partitioned Runge-Kutta schemes
13234b84eec9SHong Zhang 
13244b84eec9SHong Zhang   The user should provide the right hand side of the equation
13254b84eec9SHong Zhang   using TSSetRHSFunction().
13264b84eec9SHong Zhang 
13274b84eec9SHong Zhang   Notes:
1328f944a40eSHong Zhang   The default is TSMPRKPM2, it can be changed with TSMPRKSetType() or -ts_mprk_type
13294b84eec9SHong Zhang 
13304b84eec9SHong Zhang   Level: beginner
13314b84eec9SHong Zhang 
13324b84eec9SHong Zhang .seealso:  TSCreate(), TS, TSSetType(), TSMPRKSetType(), TSMPRKGetType(), TSMPRKType, TSMPRKRegister(), TSMPRKSetMultirateType()
13334b84eec9SHong Zhang            TSMPRKM2, TSMPRKM3, TSMPRKRFSMR3, TSMPRKRFSMR2
13344b84eec9SHong Zhang 
13354b84eec9SHong Zhang M*/
13364b84eec9SHong Zhang PETSC_EXTERN PetscErrorCode TSCreate_MPRK(TS ts)
13374b84eec9SHong Zhang {
13384b84eec9SHong Zhang   TS_MPRK        *mprk;
13394b84eec9SHong Zhang   PetscErrorCode ierr;
13404b84eec9SHong Zhang 
13414b84eec9SHong Zhang   PetscFunctionBegin;
13424b84eec9SHong Zhang   ierr = TSMPRKInitializePackage();CHKERRQ(ierr);
13434b84eec9SHong Zhang 
13444b84eec9SHong Zhang   ts->ops->reset          = TSReset_MPRK;
13454b84eec9SHong Zhang   ts->ops->destroy        = TSDestroy_MPRK;
13464b84eec9SHong Zhang   ts->ops->view           = TSView_MPRK;
13474b84eec9SHong Zhang   ts->ops->load           = TSLoad_MPRK;
13484b84eec9SHong Zhang   ts->ops->setup          = TSSetUp_MPRK;
13494b84eec9SHong Zhang   ts->ops->step           = TSStep_MPRK;
13504b84eec9SHong Zhang   ts->ops->evaluatestep   = TSEvaluateStep_MPRK;
13514b84eec9SHong Zhang   ts->ops->setfromoptions = TSSetFromOptions_MPRK;
13524b84eec9SHong Zhang   ts->ops->getstages      = TSGetStages_MPRK;
13534b84eec9SHong Zhang 
13544b84eec9SHong Zhang   ierr = PetscNewLog(ts,&mprk);CHKERRQ(ierr);
13554b84eec9SHong Zhang   ts->data = (void*)mprk;
13564b84eec9SHong Zhang 
13574b84eec9SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSMPRKGetType_C",TSMPRKGetType_MPRK);CHKERRQ(ierr);
13584b84eec9SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSMPRKSetType_C",TSMPRKSetType_MPRK);CHKERRQ(ierr);
13594b84eec9SHong Zhang 
13604b84eec9SHong Zhang   ierr = TSMPRKSetType(ts,TSMPRKDefault);CHKERRQ(ierr);
13614b84eec9SHong Zhang   PetscFunctionReturn(0);
13624b84eec9SHong Zhang }
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