xref: /petsc/src/ts/tutorials/ex16fwd.c (revision 5f80ce2ab25dff0f4601e710601cbbcecf323266)

static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n\
Input parameters include:\n\
      -mu : stiffness parameter\n\n";

/*
   Concepts: TS^time-dependent nonlinear problems
   Concepts: TS^van der Pol equation
   Concepts: TS^adjoint sensitivity analysis
   Processors: 1
*/
/* ------------------------------------------------------------------------

   This program solves the van der Pol equation
       y'' - \mu (1-y^2)*y' + y = 0        (1)
   on the domain 0 <= x <= 1, with the boundary conditions
       y(0) = 2, y'(0) = 0,
   and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with an explicit Runge-Kutta method and its discrete tangent linear model.

   Notes:
   This code demonstrates the TSForward interface to a system of ordinary differential equations (ODEs) in the form of u_t = f(u,t).

   (1) can be turned into a system of first order ODEs
   [ y' ] = [          z          ]
   [ z' ]   [ \mu (1 - y^2) z - y ]

   which then we can write as a vector equation

   [ u_1' ] = [             u_2           ]  (2)
   [ u_2' ]   [ \mu (1 - u_1^2) u_2 - u_1 ]

   which is now in the form of u_t = F(u,t).

   The user provides the right-hand-side function

   [ f(u,t) ] = [ u_2                       ]
                [ \mu (1 - u_1^2) u_2 - u_1 ]

   the Jacobian function

   df   [       0           ;         1        ]
   -- = [                                      ]
   du   [ -2 \mu u_1*u_2 - 1;  \mu (1 - u_1^2) ]

   and the JacobainP (the Jacobian w.r.t. parameter) function

   df      [  0;   0;     0             ]
   ---   = [                            ]
   d\mu    [  0;   0;  (1 - u_1^2) u_2  ]

  ------------------------------------------------------------------------- */

#include <petscts.h>
#include <petscmat.h>
typedef struct _n_User *User;
struct _n_User {
  PetscReal mu;
  PetscReal next_output;
  PetscReal tprev;
};

/*
   User-defined routines
*/
static PetscErrorCode RHSFunction(TS ts,PetscReal t,Vec X,Vec F,void *ctx)
{
  User              user = (User)ctx;
  PetscScalar       *f;
  const PetscScalar *x;

  PetscFunctionBeginUser;
  CHKERRQ(VecGetArrayRead(X,&x));
  CHKERRQ(VecGetArray(F,&f));
  f[0] = x[1];
  f[1] = user->mu*(1.-x[0]*x[0])*x[1]-x[0];
  CHKERRQ(VecRestoreArrayRead(X,&x));
  CHKERRQ(VecRestoreArray(F,&f));
  PetscFunctionReturn(0);
}

static PetscErrorCode RHSJacobian(TS ts,PetscReal t,Vec X,Mat A,Mat B,void *ctx)
{
  User              user = (User)ctx;
  PetscReal         mu   = user->mu;
  PetscInt          rowcol[] = {0,1};
  PetscScalar       J[2][2];
  const PetscScalar *x;

  PetscFunctionBeginUser;
  CHKERRQ(VecGetArrayRead(X,&x));
  J[0][0] = 0;
  J[1][0] = -2.*mu*x[1]*x[0]-1.;
  J[0][1] = 1.0;
  J[1][1] = mu*(1.0-x[0]*x[0]);
  CHKERRQ(MatSetValues(A,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES));
  CHKERRQ(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
  CHKERRQ(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
  if (A != B) {
    CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
    CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
  }
  CHKERRQ(VecRestoreArrayRead(X,&x));
  PetscFunctionReturn(0);
}

static PetscErrorCode RHSJacobianP(TS ts,PetscReal t,Vec X,Mat A,void *ctx)
{
  PetscInt          row[] = {0,1},col[]={2};
  PetscScalar       J[2][1];
  const PetscScalar *x;

  PetscFunctionBeginUser;
  CHKERRQ(VecGetArrayRead(X,&x));
  J[0][0] = 0;
  J[1][0] = (1.-x[0]*x[0])*x[1];
  CHKERRQ(VecRestoreArrayRead(X,&x));
  CHKERRQ(MatSetValues(A,2,row,1,col,&J[0][0],INSERT_VALUES));

  CHKERRQ(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
  CHKERRQ(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
  PetscFunctionReturn(0);
}

/* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */
static PetscErrorCode Monitor(TS ts,PetscInt step,PetscReal t,Vec X,void *ctx)
{
  const PetscScalar *x;
  PetscReal         tfinal, dt, tprev;
  User              user = (User)ctx;

  PetscFunctionBeginUser;
  CHKERRQ(TSGetTimeStep(ts,&dt));
  CHKERRQ(TSGetMaxTime(ts,&tfinal));
  CHKERRQ(TSGetPrevTime(ts,&tprev));
  CHKERRQ(VecGetArrayRead(X,&x));
  CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"[%.1f] %D TS %.6f (dt = %.6f) X % 12.6e % 12.6e\n",(double)user->next_output,step,(double)t,(double)dt,(double)PetscRealPart(x[0]),(double)PetscRealPart(x[1])));
  CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"t %.6f (tprev = %.6f) \n",(double)t,(double)tprev));
  CHKERRQ(VecRestoreArrayRead(X,&x));
  PetscFunctionReturn(0);
}

int main(int argc,char **argv)
{
  TS             ts;            /* nonlinear solver */
  Vec            x;             /* solution, residual vectors */
  Mat            A;             /* Jacobian matrix */
  Mat            Jacp;          /* JacobianP matrix */
  PetscInt       steps;
  PetscReal      ftime   =0.5;
  PetscBool      monitor = PETSC_FALSE;
  PetscScalar    *x_ptr;
  PetscMPIInt    size;
  struct _n_User user;
  PetscErrorCode ierr;
  Mat            sp;

  /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     Initialize program
     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
  ierr = PetscInitialize(&argc,&argv,NULL,help);if (ierr) return ierr;
  CHKERRMPI(MPI_Comm_size(PETSC_COMM_WORLD,&size));
  PetscCheck(size == 1,PETSC_COMM_WORLD,PETSC_ERR_WRONG_MPI_SIZE,"This is a uniprocessor example only!");

  /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    Set runtime options
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
  user.mu          = 1;
  user.next_output = 0.0;

  CHKERRQ(PetscOptionsGetReal(NULL,NULL,"-mu",&user.mu,NULL));
  CHKERRQ(PetscOptionsGetBool(NULL,NULL,"-monitor",&monitor,NULL));

  /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    Create necessary matrix and vectors, solve same ODE on every process
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
  CHKERRQ(MatCreate(PETSC_COMM_WORLD,&A));
  CHKERRQ(MatSetSizes(A,PETSC_DECIDE,PETSC_DECIDE,2,2));
  CHKERRQ(MatSetFromOptions(A));
  CHKERRQ(MatSetUp(A));
  CHKERRQ(MatCreateVecs(A,&x,NULL));

  CHKERRQ(MatCreate(PETSC_COMM_WORLD,&Jacp));
  CHKERRQ(MatSetSizes(Jacp,PETSC_DECIDE,PETSC_DECIDE,2,3));
  CHKERRQ(MatSetFromOptions(Jacp));
  CHKERRQ(MatSetUp(Jacp));

  CHKERRQ(MatCreateDense(PETSC_COMM_WORLD,PETSC_DECIDE,PETSC_DECIDE,2,3,NULL,&sp));
  CHKERRQ(MatZeroEntries(sp));
  CHKERRQ(MatShift(sp,1.0));

  /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     Create timestepping solver context
     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
  CHKERRQ(TSCreate(PETSC_COMM_WORLD,&ts));
  CHKERRQ(TSSetType(ts,TSRK));
  CHKERRQ(TSSetRHSFunction(ts,NULL,RHSFunction,&user));
  /*   Set RHS Jacobian for the adjoint integration */
  CHKERRQ(TSSetRHSJacobian(ts,A,A,RHSJacobian,&user));
  CHKERRQ(TSSetMaxTime(ts,ftime));
  CHKERRQ(TSSetExactFinalTime(ts,TS_EXACTFINALTIME_MATCHSTEP));
  if (monitor) {
    CHKERRQ(TSMonitorSet(ts,Monitor,&user,NULL));
  }
  CHKERRQ(TSForwardSetSensitivities(ts,3,sp));
  CHKERRQ(TSSetRHSJacobianP(ts,Jacp,RHSJacobianP,&user));

  /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     Set initial conditions
   - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
  CHKERRQ(VecGetArray(x,&x_ptr));

  x_ptr[0] = 2;   x_ptr[1] = 0.66666654321;
  CHKERRQ(VecRestoreArray(x,&x_ptr));
  CHKERRQ(TSSetTimeStep(ts,.001));

  /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     Set runtime options
   - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
  CHKERRQ(TSSetFromOptions(ts));

  /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     Solve nonlinear system
     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
  CHKERRQ(TSSolve(ts,x));
  CHKERRQ(TSGetSolveTime(ts,&ftime));
  CHKERRQ(TSGetStepNumber(ts,&steps));
  CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"mu %g, steps %D, ftime %g\n",(double)user.mu,steps,(double)ftime));
  CHKERRQ(VecView(x,PETSC_VIEWER_STDOUT_WORLD));

  CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\n forward sensitivity: d[y(tf) z(tf)]/d[y0 z0 mu]\n"));
  CHKERRQ(MatView(sp,PETSC_VIEWER_STDOUT_WORLD));

  /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     Free work space.  All PETSc objects should be destroyed when they
     are no longer needed.
   - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
  CHKERRQ(MatDestroy(&A));
  CHKERRQ(MatDestroy(&Jacp));
  CHKERRQ(VecDestroy(&x));
  CHKERRQ(MatDestroy(&sp));
  CHKERRQ(TSDestroy(&ts));
  ierr = PetscFinalize();
  return ierr;
}

/*TEST

    test:
      args: -monitor 0 -ts_adapt_type none

TEST*/