xref: /petsc/src/ts/tutorials/ex20adj.c (revision 327415f76d85372a4417cf1aaa14db707d4d6c04)
1c4762a1bSJed Brown static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n";
2c4762a1bSJed Brown 
3c4762a1bSJed Brown /* ------------------------------------------------------------------------
4c4762a1bSJed Brown 
5c4762a1bSJed Brown    This program solves the van der Pol DAE ODE equivalent
6c4762a1bSJed Brown       [ u_1' ] = [          u_2                ]  (2)
7c4762a1bSJed Brown       [ u_2' ]   [ \mu ((1 - u_1^2) u_2 - u_1) ]
8c4762a1bSJed Brown    on the domain 0 <= x <= 1, with the boundary conditions
9c4762a1bSJed Brown        u_1(0) = 2, u_2(0) = - 2/3 +10/(81*\mu) - 292/(2187*\mu^2),
10c4762a1bSJed Brown    and
11c4762a1bSJed Brown        \mu = 10^6 ( y'(0) ~ -0.6666665432100101).,
12c4762a1bSJed Brown    and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with the implicit theta method and its discrete adjoint.
13c4762a1bSJed Brown 
14c4762a1bSJed Brown    Notes:
15c4762a1bSJed Brown    This code demonstrates the TSAdjoint interface to a DAE system.
16c4762a1bSJed Brown 
17c4762a1bSJed Brown    The user provides the implicit right-hand-side function
185ab1ac2bSHong Zhang    [ F(u',u,t) ] = [u' - f(u,t)] = [ u_1'] - [        u_2             ]
19c4762a1bSJed Brown                                    [ u_2']   [ \mu ((1-u_1^2)u_2-u_1) ]
20c4762a1bSJed Brown 
215ab1ac2bSHong Zhang    and the Jacobian of F (from the PETSc user manual)
22c4762a1bSJed Brown 
235ab1ac2bSHong Zhang               dF   dF
245ab1ac2bSHong Zhang    J(F) = a * -- + --
25c4762a1bSJed Brown               du'  du
26c4762a1bSJed Brown 
275ab1ac2bSHong Zhang    and the JacobianP of the explicit right-hand side of (2) f(u,t) ( which is equivalent to -F(0,u,t)).
28c4762a1bSJed Brown    df   [       0               ]
29c4762a1bSJed Brown    -- = [                       ]
30c4762a1bSJed Brown    dp   [ (1 - u_1^2) u_2 - u_1 ].
31c4762a1bSJed Brown 
32c4762a1bSJed Brown    See ex20.c for more details on the Jacobian.
33c4762a1bSJed Brown 
34c4762a1bSJed Brown   ------------------------------------------------------------------------- */
35c4762a1bSJed Brown #include <petscts.h>
36c4762a1bSJed Brown #include <petsctao.h>
37c4762a1bSJed Brown 
38c4762a1bSJed Brown typedef struct _n_User *User;
39c4762a1bSJed Brown struct _n_User {
40c4762a1bSJed Brown   PetscReal mu;
41c4762a1bSJed Brown   PetscReal next_output;
42c4762a1bSJed Brown 
43c4762a1bSJed Brown   /* Sensitivity analysis support */
44c4762a1bSJed Brown   PetscInt  steps;
45c4762a1bSJed Brown   PetscReal ftime;
46c4762a1bSJed Brown   Mat       A;                   /* Jacobian matrix */
47c4762a1bSJed Brown   Mat       Jacp;                /* JacobianP matrix */
48c4762a1bSJed Brown   Vec       U,lambda[2],mup[2];  /* adjoint variables */
49c4762a1bSJed Brown };
50c4762a1bSJed Brown 
51c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE  -------------------- */
52c4762a1bSJed Brown 
53c4762a1bSJed Brown static PetscErrorCode RHSFunction(TS ts,PetscReal t,Vec U,Vec F,void *ctx)
54c4762a1bSJed Brown {
55c4762a1bSJed Brown   User              user = (User)ctx;
56c4762a1bSJed Brown   PetscScalar       *f;
57c4762a1bSJed Brown   const PetscScalar *u;
58c4762a1bSJed Brown 
59c4762a1bSJed Brown   PetscFunctionBeginUser;
609566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U,&u));
619566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F,&f));
62c4762a1bSJed Brown   f[0] = u[1];
63c4762a1bSJed Brown   f[1] = user->mu*((1.-u[0]*u[0])*u[1]-u[0]);
649566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U,&u));
659566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F,&f));
66c4762a1bSJed Brown   PetscFunctionReturn(0);
67c4762a1bSJed Brown }
68c4762a1bSJed Brown 
69c4762a1bSJed Brown static PetscErrorCode RHSJacobian(TS ts,PetscReal t,Vec U,Mat A,Mat B,void *ctx)
70c4762a1bSJed Brown {
71c4762a1bSJed Brown   User              user = (User)ctx;
72c4762a1bSJed Brown   PetscReal         mu   = user->mu;
73c4762a1bSJed Brown   PetscInt          rowcol[] = {0,1};
74c4762a1bSJed Brown   PetscScalar       J[2][2];
75c4762a1bSJed Brown   const PetscScalar *u;
76c4762a1bSJed Brown 
77c4762a1bSJed Brown   PetscFunctionBeginUser;
789566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U,&u));
79c4762a1bSJed Brown   J[0][0] = 0;
80c4762a1bSJed Brown   J[1][0] = -mu*(2.0*u[1]*u[0]+1.);
81c4762a1bSJed Brown   J[0][1] = 1.0;
82c4762a1bSJed Brown   J[1][1] = mu*(1.0-u[0]*u[0]);
839566063dSJacob Faibussowitsch   PetscCall(MatSetValues(A,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES));
849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
86c4762a1bSJed Brown   if (A != B) {
879566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
889566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
89c4762a1bSJed Brown   }
909566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U,&u));
91c4762a1bSJed Brown   PetscFunctionReturn(0);
92c4762a1bSJed Brown }
93c4762a1bSJed Brown 
94c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE  -------------------- */
95c4762a1bSJed Brown 
96c4762a1bSJed Brown static PetscErrorCode IFunction(TS ts,PetscReal t,Vec U,Vec Udot,Vec F,void *ctx)
97c4762a1bSJed Brown {
98c4762a1bSJed Brown   User              user = (User)ctx;
99c4762a1bSJed Brown   const PetscScalar *u,*udot;
100c4762a1bSJed Brown   PetscScalar       *f;
101c4762a1bSJed Brown 
102c4762a1bSJed Brown   PetscFunctionBeginUser;
1039566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U,&u));
1049566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(Udot,&udot));
1059566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F,&f));
106c4762a1bSJed Brown   f[0] = udot[0] - u[1];
107c4762a1bSJed Brown   f[1] = udot[1] - user->mu*((1.0-u[0]*u[0])*u[1] - u[0]);
1089566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U,&u));
1099566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(Udot,&udot));
1109566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F,&f));
111c4762a1bSJed Brown   PetscFunctionReturn(0);
112c4762a1bSJed Brown }
113c4762a1bSJed Brown 
114c4762a1bSJed Brown static PetscErrorCode IJacobian(TS ts,PetscReal t,Vec U,Vec Udot,PetscReal a,Mat A,Mat B,void *ctx)
115c4762a1bSJed Brown {
116c4762a1bSJed Brown   User              user     = (User)ctx;
117c4762a1bSJed Brown   PetscInt          rowcol[] = {0,1};
118c4762a1bSJed Brown   PetscScalar       J[2][2];
119c4762a1bSJed Brown   const PetscScalar *u;
120c4762a1bSJed Brown 
121c4762a1bSJed Brown   PetscFunctionBeginUser;
1229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U,&u));
123c4762a1bSJed Brown 
124c4762a1bSJed Brown   J[0][0] = a;     J[0][1] =  -1.0;
125c4762a1bSJed Brown   J[1][0] = user->mu*(2.0*u[0]*u[1] + 1.0);   J[1][1] = a - user->mu*(1.0-u[0]*u[0]);
126c4762a1bSJed Brown 
1279566063dSJacob Faibussowitsch   PetscCall(MatSetValues(B,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES));
1289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U,&u));
129c4762a1bSJed Brown 
1309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
1319566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
132c4762a1bSJed Brown   if (B && A != B) {
1339566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
1349566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
135c4762a1bSJed Brown   }
136c4762a1bSJed Brown   PetscFunctionReturn(0);
137c4762a1bSJed Brown }
138c4762a1bSJed Brown 
139c4762a1bSJed Brown static PetscErrorCode RHSJacobianP(TS ts,PetscReal t,Vec U,Mat A,void *ctx)
140c4762a1bSJed Brown {
141c4762a1bSJed Brown   PetscInt          row[] = {0,1},col[]={0};
142c4762a1bSJed Brown   PetscScalar       J[2][1];
143c4762a1bSJed Brown   const PetscScalar *u;
144c4762a1bSJed Brown 
145c4762a1bSJed Brown   PetscFunctionBeginUser;
1469566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U,&u));
147c4762a1bSJed Brown   J[0][0] = 0;
148c4762a1bSJed Brown   J[1][0] = (1.-u[0]*u[0])*u[1]-u[0];
1499566063dSJacob Faibussowitsch   PetscCall(MatSetValues(A,2,row,1,col,&J[0][0],INSERT_VALUES));
1509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
1519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
1529566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U,&u));
153c4762a1bSJed Brown   PetscFunctionReturn(0);
154c4762a1bSJed Brown }
155c4762a1bSJed Brown 
156c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */
157c4762a1bSJed Brown static PetscErrorCode Monitor(TS ts,PetscInt step,PetscReal t,Vec U,void *ctx)
158c4762a1bSJed Brown {
159c4762a1bSJed Brown   const PetscScalar *u;
160c4762a1bSJed Brown   PetscReal         tfinal, dt;
161c4762a1bSJed Brown   User              user = (User)ctx;
162c4762a1bSJed Brown   Vec               interpolatedU;
163c4762a1bSJed Brown 
164c4762a1bSJed Brown   PetscFunctionBeginUser;
1659566063dSJacob Faibussowitsch   PetscCall(TSGetTimeStep(ts,&dt));
1669566063dSJacob Faibussowitsch   PetscCall(TSGetMaxTime(ts,&tfinal));
167c4762a1bSJed Brown 
168c4762a1bSJed Brown   while (user->next_output <= t && user->next_output <= tfinal) {
1699566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(U,&interpolatedU));
1709566063dSJacob Faibussowitsch     PetscCall(TSInterpolate(ts,user->next_output,interpolatedU));
1719566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(interpolatedU,&u));
17263a3b9bcSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_WORLD,"[%g] %" PetscInt_FMT " TS %g (dt = %g) X %g %g\n",
17363a3b9bcSJacob Faibussowitsch                           (double)user->next_output,step,(double)t,(double)dt,
17463a3b9bcSJacob Faibussowitsch                           (double)PetscRealPart(u[0]),(double)PetscRealPart(u[1])));
1759566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(interpolatedU,&u));
1769566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&interpolatedU));
177c4762a1bSJed Brown     user->next_output += 0.1;
178c4762a1bSJed Brown   }
179c4762a1bSJed Brown   PetscFunctionReturn(0);
180c4762a1bSJed Brown }
181c4762a1bSJed Brown 
182c4762a1bSJed Brown int main(int argc,char **argv)
183c4762a1bSJed Brown {
184c4762a1bSJed Brown   TS             ts;
185c4762a1bSJed Brown   PetscBool      monitor = PETSC_FALSE,implicitform = PETSC_TRUE;
186c4762a1bSJed Brown   PetscScalar    *x_ptr,*y_ptr,derp;
187c4762a1bSJed Brown   PetscMPIInt    size;
188c4762a1bSJed Brown   struct _n_User user;
189c4762a1bSJed Brown 
190c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
191c4762a1bSJed Brown      Initialize program
192c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
193*327415f7SBarry Smith   PetscFunctionBeginUser;
1949566063dSJacob Faibussowitsch   PetscCall(PetscInitialize(&argc,&argv,NULL,help));
1959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PETSC_COMM_WORLD,&size));
1963c633725SBarry Smith   PetscCheck(size == 1,PETSC_COMM_WORLD,PETSC_ERR_WRONG_MPI_SIZE,"This is a uniprocessor example only!");
197c4762a1bSJed Brown 
198c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
199c4762a1bSJed Brown     Set runtime options
200c4762a1bSJed Brown     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
201c4762a1bSJed Brown   user.next_output = 0.0;
202c4762a1bSJed Brown   user.mu          = 1.0e3;
203c4762a1bSJed Brown   user.steps       = 0;
204c4762a1bSJed Brown   user.ftime       = 0.5;
2059566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL,NULL,"-monitor",&monitor,NULL));
2069566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetReal(NULL,NULL,"-mu",&user.mu,NULL));
2079566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL,NULL,"-implicitform",&implicitform,NULL));
208c4762a1bSJed Brown 
209c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
210c4762a1bSJed Brown     Create necessary matrix and vectors, solve same ODE on every process
211c4762a1bSJed Brown     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2129566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_WORLD,&user.A));
2139566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(user.A,PETSC_DECIDE,PETSC_DECIDE,2,2));
2149566063dSJacob Faibussowitsch   PetscCall(MatSetFromOptions(user.A));
2159566063dSJacob Faibussowitsch   PetscCall(MatSetUp(user.A));
2169566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.A,&user.U,NULL));
217c4762a1bSJed Brown 
2189566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_WORLD,&user.Jacp));
2199566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(user.Jacp,PETSC_DECIDE,PETSC_DECIDE,2,1));
2209566063dSJacob Faibussowitsch   PetscCall(MatSetFromOptions(user.Jacp));
2219566063dSJacob Faibussowitsch   PetscCall(MatSetUp(user.Jacp));
222c4762a1bSJed Brown 
223c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
224c4762a1bSJed Brown      Create timestepping solver context
225c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2269566063dSJacob Faibussowitsch   PetscCall(TSCreate(PETSC_COMM_WORLD,&ts));
2279566063dSJacob Faibussowitsch   PetscCall(TSSetEquationType(ts,TS_EQ_ODE_EXPLICIT)); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */
228c4762a1bSJed Brown   if (implicitform) {
2299566063dSJacob Faibussowitsch     PetscCall(TSSetIFunction(ts,NULL,IFunction,&user));
2309566063dSJacob Faibussowitsch     PetscCall(TSSetIJacobian(ts,user.A,user.A,IJacobian,&user));
2319566063dSJacob Faibussowitsch     PetscCall(TSSetType(ts,TSCN));
232c4762a1bSJed Brown   } else {
2339566063dSJacob Faibussowitsch     PetscCall(TSSetRHSFunction(ts,NULL,RHSFunction,&user));
2349566063dSJacob Faibussowitsch     PetscCall(TSSetRHSJacobian(ts,user.A,user.A,RHSJacobian,&user));
2359566063dSJacob Faibussowitsch     PetscCall(TSSetType(ts,TSRK));
236c4762a1bSJed Brown   }
2379566063dSJacob Faibussowitsch   PetscCall(TSSetRHSJacobianP(ts,user.Jacp,RHSJacobianP,&user));
2389566063dSJacob Faibussowitsch   PetscCall(TSSetMaxTime(ts,user.ftime));
2399566063dSJacob Faibussowitsch   PetscCall(TSSetTimeStep(ts,0.001));
2409566063dSJacob Faibussowitsch   PetscCall(TSSetExactFinalTime(ts,TS_EXACTFINALTIME_MATCHSTEP));
2419566063dSJacob Faibussowitsch   if (monitor) PetscCall(TSMonitorSet(ts,Monitor,&user,NULL));
242c4762a1bSJed Brown 
243c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
244c4762a1bSJed Brown      Set initial conditions
245c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2469566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.U,&x_ptr));
247c4762a1bSJed Brown   x_ptr[0] = 2.0;
248c4762a1bSJed Brown   x_ptr[1] = -2.0/3.0 + 10.0/(81.0*user.mu) - 292.0/(2187.0*user.mu*user.mu);
2499566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.U,&x_ptr));
2509566063dSJacob Faibussowitsch   PetscCall(TSSetTimeStep(ts,0.001));
251c4762a1bSJed Brown 
252c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
253c4762a1bSJed Brown     Save trajectory of solution so that TSAdjointSolve() may be used
254c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2559566063dSJacob Faibussowitsch   PetscCall(TSSetSaveTrajectory(ts));
256c4762a1bSJed Brown 
257c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
258c4762a1bSJed Brown      Set runtime options
259c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2609566063dSJacob Faibussowitsch   PetscCall(TSSetFromOptions(ts));
261c4762a1bSJed Brown 
2629566063dSJacob Faibussowitsch   PetscCall(TSSolve(ts,user.U));
2639566063dSJacob Faibussowitsch   PetscCall(TSGetSolveTime(ts,&user.ftime));
2649566063dSJacob Faibussowitsch   PetscCall(TSGetStepNumber(ts,&user.steps));
265c4762a1bSJed Brown 
266c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
267c4762a1bSJed Brown      Adjoint model starts here
268c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2699566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.A,&user.lambda[0],NULL));
270c4762a1bSJed Brown   /* Set initial conditions for the adjoint integration */
2719566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[0],&y_ptr));
272c4762a1bSJed Brown   y_ptr[0] = 1.0; y_ptr[1] = 0.0;
2739566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[0],&y_ptr));
2749566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.A,&user.lambda[1],NULL));
2759566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[1],&y_ptr));
276c4762a1bSJed Brown   y_ptr[0] = 0.0; y_ptr[1] = 1.0;
2779566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[1],&y_ptr));
278c4762a1bSJed Brown 
2799566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.Jacp,&user.mup[0],NULL));
2809566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[0],&x_ptr));
281c4762a1bSJed Brown   x_ptr[0] = 0.0;
2829566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[0],&x_ptr));
2839566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.Jacp,&user.mup[1],NULL));
2849566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[1],&x_ptr));
285c4762a1bSJed Brown   x_ptr[0] = 0.0;
2869566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[1],&x_ptr));
287c4762a1bSJed Brown 
2889566063dSJacob Faibussowitsch   PetscCall(TSSetCostGradients(ts,2,user.lambda,user.mup));
289c4762a1bSJed Brown 
2909566063dSJacob Faibussowitsch   PetscCall(TSAdjointSolve(ts));
291c4762a1bSJed Brown 
2929566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[y(tf)]/d[y0]  d[y(tf)]/d[z0]\n"));
2939566063dSJacob Faibussowitsch   PetscCall(VecView(user.lambda[0],PETSC_VIEWER_STDOUT_WORLD));
2949566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[z(tf)]/d[y0]  d[z(tf)]/d[z0]\n"));
2959566063dSJacob Faibussowitsch   PetscCall(VecView(user.lambda[1],PETSC_VIEWER_STDOUT_WORLD));
296c4762a1bSJed Brown 
2979566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[0],&x_ptr));
2989566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[0],&y_ptr));
299c4762a1bSJed Brown   derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0];
3009566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[0],&x_ptr));
3019566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[0],&y_ptr));
3029566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt parameters: d[y(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp)));
303c4762a1bSJed Brown 
3049566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[1],&x_ptr));
3059566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[1],&y_ptr));
306c4762a1bSJed Brown   derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0];
3079566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[1],&x_ptr));
3089566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[1],&y_ptr));
3099566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensivitity wrt parameters: d[z(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp)));
310c4762a1bSJed Brown 
311c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
312c4762a1bSJed Brown      Free work space.  All PETSc objects should be destroyed when they
313c4762a1bSJed Brown      are no longer needed.
314c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
3159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&user.A));
3169566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&user.Jacp));
3179566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.U));
3189566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.lambda[0]));
3199566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.lambda[1]));
3209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.mup[0]));
3219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.mup[1]));
3229566063dSJacob Faibussowitsch   PetscCall(TSDestroy(&ts));
323c4762a1bSJed Brown 
3249566063dSJacob Faibussowitsch   PetscCall(PetscFinalize());
325b122ec5aSJacob Faibussowitsch   return 0;
326c4762a1bSJed Brown }
327c4762a1bSJed Brown 
328c4762a1bSJed Brown /*TEST
329c4762a1bSJed Brown 
330c4762a1bSJed Brown     test:
331c4762a1bSJed Brown       requires: revolve
332c4762a1bSJed Brown       args: -monitor 0 -ts_type theta -ts_theta_endpoint -ts_theta_theta 0.5 -viewer_binary_skip_info -ts_dt 0.001 -mu 100000
333c4762a1bSJed Brown 
334c4762a1bSJed Brown     test:
335c4762a1bSJed Brown       suffix: 2
336c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only
337c4762a1bSJed Brown 
338c4762a1bSJed Brown     test:
339c4762a1bSJed Brown       suffix: 3
340c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 0
341c4762a1bSJed Brown       output_file: output/ex20adj_2.out
342c4762a1bSJed Brown 
343c4762a1bSJed Brown     test:
344c4762a1bSJed Brown       suffix: 4
345c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
346c4762a1bSJed Brown       output_file: output/ex20adj_2.out
347c4762a1bSJed Brown 
348c4762a1bSJed Brown     test:
349c4762a1bSJed Brown       suffix: 5
350c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
351c4762a1bSJed Brown       output_file: output/ex20adj_2.out
352c4762a1bSJed Brown 
353c4762a1bSJed Brown     test:
354c4762a1bSJed Brown       suffix: 6
355c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0
356c4762a1bSJed Brown       output_file: output/ex20adj_2.out
357c4762a1bSJed Brown 
358c4762a1bSJed Brown     test:
359c4762a1bSJed Brown       suffix: 7
360c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
361c4762a1bSJed Brown       output_file: output/ex20adj_2.out
362c4762a1bSJed Brown 
363c4762a1bSJed Brown     test:
364c4762a1bSJed Brown       suffix: 8
36560f0b76eSHong Zhang       requires: revolve !cams
366c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor
367c4762a1bSJed Brown       output_file: output/ex20adj_3.out
368c4762a1bSJed Brown 
369c4762a1bSJed Brown     test:
370c4762a1bSJed Brown       suffix: 9
37160f0b76eSHong Zhang       requires: revolve !cams
372c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor
373c4762a1bSJed Brown       output_file: output/ex20adj_4.out
374c4762a1bSJed Brown 
375c4762a1bSJed Brown     test:
376c4762a1bSJed Brown       requires: revolve
377c4762a1bSJed Brown       suffix: 10
378c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only
379c4762a1bSJed Brown       output_file: output/ex20adj_2.out
380c4762a1bSJed Brown 
381c4762a1bSJed Brown     test:
382c4762a1bSJed Brown       requires: revolve
383c4762a1bSJed Brown       suffix: 11
384c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 0
385c4762a1bSJed Brown       output_file: output/ex20adj_2.out
386c4762a1bSJed Brown 
387c4762a1bSJed Brown     test:
388c4762a1bSJed Brown       suffix: 12
389c4762a1bSJed Brown       requires: revolve
390c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only
391c4762a1bSJed Brown       output_file: output/ex20adj_2.out
392c4762a1bSJed Brown 
393c4762a1bSJed Brown     test:
394c4762a1bSJed Brown       suffix: 13
395c4762a1bSJed Brown       requires: revolve
396c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0
397c4762a1bSJed Brown       output_file: output/ex20adj_2.out
398c4762a1bSJed Brown 
399c4762a1bSJed Brown     test:
400c4762a1bSJed Brown       suffix: 14
401c4762a1bSJed Brown       requires: revolve
402c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
403c4762a1bSJed Brown       output_file: output/ex20adj_2.out
404c4762a1bSJed Brown 
405c4762a1bSJed Brown     test:
406c4762a1bSJed Brown       suffix: 15
407c4762a1bSJed Brown       requires: revolve
408c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0
409c4762a1bSJed Brown       output_file: output/ex20adj_2.out
410c4762a1bSJed Brown 
411c4762a1bSJed Brown     test:
412c4762a1bSJed Brown       suffix: 16
413c4762a1bSJed Brown       requires: revolve
414c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
415c4762a1bSJed Brown       output_file: output/ex20adj_2.out
416c4762a1bSJed Brown 
417c4762a1bSJed Brown     test:
418c4762a1bSJed Brown       suffix: 17
419c4762a1bSJed Brown       requires: revolve
420c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
421c4762a1bSJed Brown       output_file: output/ex20adj_2.out
422c4762a1bSJed Brown 
423c4762a1bSJed Brown     test:
424c4762a1bSJed Brown       suffix: 18
425c4762a1bSJed Brown       requires: revolve
426c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
427c4762a1bSJed Brown       output_file: output/ex20adj_2.out
428c4762a1bSJed Brown 
429c4762a1bSJed Brown     test:
430c4762a1bSJed Brown       suffix: 19
431c4762a1bSJed Brown       requires: revolve
432c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
433c4762a1bSJed Brown       output_file: output/ex20adj_2.out
434c4762a1bSJed Brown 
435c4762a1bSJed Brown     test:
436c4762a1bSJed Brown       suffix: 20
437c4762a1bSJed Brown       requires: revolve
438c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0
439c4762a1bSJed Brown       output_file: output/ex20adj_2.out
440c4762a1bSJed Brown 
441c4762a1bSJed Brown     test:
442c4762a1bSJed Brown       suffix: 21
443c4762a1bSJed Brown       requires: revolve
444c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
445c4762a1bSJed Brown       output_file: output/ex20adj_2.out
446c4762a1bSJed Brown 
447c4762a1bSJed Brown     test:
448c4762a1bSJed Brown       suffix: 22
449c4762a1bSJed Brown       args: -ts_type beuler -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only
450c4762a1bSJed Brown       output_file: output/ex20adj_2.out
451cc4f23bcSHong Zhang 
452cc4f23bcSHong Zhang     test:
453cc4f23bcSHong Zhang       suffix: 23
454cc4f23bcSHong Zhang       requires: cams
455533251d3SHong Zhang       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor -ts_trajectory_memory_type cams
45660f0b76eSHong Zhang       output_file: output/ex20adj_5.out
457cc4f23bcSHong Zhang 
458cc4f23bcSHong Zhang     test:
459cc4f23bcSHong Zhang       suffix: 24
460cc4f23bcSHong Zhang       requires: cams
461533251d3SHong Zhang       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor -ts_trajectory_memory_type cams
46260f0b76eSHong Zhang       output_file: output/ex20adj_6.out
463cc4f23bcSHong Zhang 
464c4762a1bSJed Brown TEST*/
465