1c4762a1bSJed Brown static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n"; 2c4762a1bSJed Brown 3c4762a1bSJed Brown /* ------------------------------------------------------------------------ 4c4762a1bSJed Brown 5c4762a1bSJed Brown This program solves the van der Pol DAE ODE equivalent 6c4762a1bSJed Brown [ u_1' ] = [ u_2 ] (2) 7c4762a1bSJed Brown [ u_2' ] [ \mu ((1 - u_1^2) u_2 - u_1) ] 8c4762a1bSJed Brown on the domain 0 <= x <= 1, with the boundary conditions 9c4762a1bSJed Brown u_1(0) = 2, u_2(0) = - 2/3 +10/(81*\mu) - 292/(2187*\mu^2), 10c4762a1bSJed Brown and 11c4762a1bSJed Brown \mu = 10^6 ( y'(0) ~ -0.6666665432100101)., 12c4762a1bSJed Brown and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with the implicit theta method and its discrete adjoint. 13c4762a1bSJed Brown 14c4762a1bSJed Brown Notes: 15c4762a1bSJed Brown This code demonstrates the TSAdjoint interface to a DAE system. 16c4762a1bSJed Brown 17c4762a1bSJed Brown The user provides the implicit right-hand-side function 185ab1ac2bSHong Zhang [ F(u',u,t) ] = [u' - f(u,t)] = [ u_1'] - [ u_2 ] 19c4762a1bSJed Brown [ u_2'] [ \mu ((1-u_1^2)u_2-u_1) ] 20c4762a1bSJed Brown 215ab1ac2bSHong Zhang and the Jacobian of F (from the PETSc user manual) 22c4762a1bSJed Brown 235ab1ac2bSHong Zhang dF dF 245ab1ac2bSHong Zhang J(F) = a * -- + -- 25c4762a1bSJed Brown du' du 26c4762a1bSJed Brown 275ab1ac2bSHong Zhang and the JacobianP of the explicit right-hand side of (2) f(u,t) ( which is equivalent to -F(0,u,t)). 28c4762a1bSJed Brown df [ 0 ] 29c4762a1bSJed Brown -- = [ ] 30c4762a1bSJed Brown dp [ (1 - u_1^2) u_2 - u_1 ]. 31c4762a1bSJed Brown 32c4762a1bSJed Brown See ex20.c for more details on the Jacobian. 33c4762a1bSJed Brown 34c4762a1bSJed Brown ------------------------------------------------------------------------- */ 35c4762a1bSJed Brown #include <petscts.h> 36c4762a1bSJed Brown #include <petsctao.h> 37c4762a1bSJed Brown 38c4762a1bSJed Brown typedef struct _n_User *User; 39c4762a1bSJed Brown struct _n_User { 40c4762a1bSJed Brown PetscReal mu; 41c4762a1bSJed Brown PetscReal next_output; 42c4762a1bSJed Brown 43c4762a1bSJed Brown /* Sensitivity analysis support */ 44c4762a1bSJed Brown PetscInt steps; 45c4762a1bSJed Brown PetscReal ftime; 46c4762a1bSJed Brown Mat A; /* Jacobian matrix */ 47c4762a1bSJed Brown Mat Jacp; /* JacobianP matrix */ 48c4762a1bSJed Brown Vec U,lambda[2],mup[2]; /* adjoint variables */ 49c4762a1bSJed Brown }; 50c4762a1bSJed Brown 51c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE -------------------- */ 52c4762a1bSJed Brown 53c4762a1bSJed Brown static PetscErrorCode RHSFunction(TS ts,PetscReal t,Vec U,Vec F,void *ctx) 54c4762a1bSJed Brown { 55c4762a1bSJed Brown User user = (User)ctx; 56c4762a1bSJed Brown PetscScalar *f; 57c4762a1bSJed Brown const PetscScalar *u; 58c4762a1bSJed Brown 59c4762a1bSJed Brown PetscFunctionBeginUser; 609566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U,&u)); 619566063dSJacob Faibussowitsch PetscCall(VecGetArray(F,&f)); 62c4762a1bSJed Brown f[0] = u[1]; 63c4762a1bSJed Brown f[1] = user->mu*((1.-u[0]*u[0])*u[1]-u[0]); 649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U,&u)); 659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F,&f)); 66c4762a1bSJed Brown PetscFunctionReturn(0); 67c4762a1bSJed Brown } 68c4762a1bSJed Brown 69c4762a1bSJed Brown static PetscErrorCode RHSJacobian(TS ts,PetscReal t,Vec U,Mat A,Mat B,void *ctx) 70c4762a1bSJed Brown { 71c4762a1bSJed Brown User user = (User)ctx; 72c4762a1bSJed Brown PetscReal mu = user->mu; 73c4762a1bSJed Brown PetscInt rowcol[] = {0,1}; 74c4762a1bSJed Brown PetscScalar J[2][2]; 75c4762a1bSJed Brown const PetscScalar *u; 76c4762a1bSJed Brown 77c4762a1bSJed Brown PetscFunctionBeginUser; 789566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U,&u)); 79c4762a1bSJed Brown J[0][0] = 0; 80c4762a1bSJed Brown J[1][0] = -mu*(2.0*u[1]*u[0]+1.); 81c4762a1bSJed Brown J[0][1] = 1.0; 82c4762a1bSJed Brown J[1][1] = mu*(1.0-u[0]*u[0]); 839566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES)); 849566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 859566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 86c4762a1bSJed Brown if (A != B) { 879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 89c4762a1bSJed Brown } 909566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U,&u)); 91c4762a1bSJed Brown PetscFunctionReturn(0); 92c4762a1bSJed Brown } 93c4762a1bSJed Brown 94c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE -------------------- */ 95c4762a1bSJed Brown 96c4762a1bSJed Brown static PetscErrorCode IFunction(TS ts,PetscReal t,Vec U,Vec Udot,Vec F,void *ctx) 97c4762a1bSJed Brown { 98c4762a1bSJed Brown User user = (User)ctx; 99c4762a1bSJed Brown const PetscScalar *u,*udot; 100c4762a1bSJed Brown PetscScalar *f; 101c4762a1bSJed Brown 102c4762a1bSJed Brown PetscFunctionBeginUser; 1039566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U,&u)); 1049566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Udot,&udot)); 1059566063dSJacob Faibussowitsch PetscCall(VecGetArray(F,&f)); 106c4762a1bSJed Brown f[0] = udot[0] - u[1]; 107c4762a1bSJed Brown f[1] = udot[1] - user->mu*((1.0-u[0]*u[0])*u[1] - u[0]); 1089566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U,&u)); 1099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Udot,&udot)); 1109566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F,&f)); 111c4762a1bSJed Brown PetscFunctionReturn(0); 112c4762a1bSJed Brown } 113c4762a1bSJed Brown 114c4762a1bSJed Brown static PetscErrorCode IJacobian(TS ts,PetscReal t,Vec U,Vec Udot,PetscReal a,Mat A,Mat B,void *ctx) 115c4762a1bSJed Brown { 116c4762a1bSJed Brown User user = (User)ctx; 117c4762a1bSJed Brown PetscInt rowcol[] = {0,1}; 118c4762a1bSJed Brown PetscScalar J[2][2]; 119c4762a1bSJed Brown const PetscScalar *u; 120c4762a1bSJed Brown 121c4762a1bSJed Brown PetscFunctionBeginUser; 1229566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U,&u)); 123c4762a1bSJed Brown 124c4762a1bSJed Brown J[0][0] = a; J[0][1] = -1.0; 125c4762a1bSJed Brown J[1][0] = user->mu*(2.0*u[0]*u[1] + 1.0); J[1][1] = a - user->mu*(1.0-u[0]*u[0]); 126c4762a1bSJed Brown 1279566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES)); 1289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U,&u)); 129c4762a1bSJed Brown 1309566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 1319566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 132c4762a1bSJed Brown if (B && A != B) { 1339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 1349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 135c4762a1bSJed Brown } 136c4762a1bSJed Brown PetscFunctionReturn(0); 137c4762a1bSJed Brown } 138c4762a1bSJed Brown 139c4762a1bSJed Brown static PetscErrorCode RHSJacobianP(TS ts,PetscReal t,Vec U,Mat A,void *ctx) 140c4762a1bSJed Brown { 141c4762a1bSJed Brown PetscInt row[] = {0,1},col[]={0}; 142c4762a1bSJed Brown PetscScalar J[2][1]; 143c4762a1bSJed Brown const PetscScalar *u; 144c4762a1bSJed Brown 145c4762a1bSJed Brown PetscFunctionBeginUser; 1469566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U,&u)); 147c4762a1bSJed Brown J[0][0] = 0; 148c4762a1bSJed Brown J[1][0] = (1.-u[0]*u[0])*u[1]-u[0]; 1499566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,2,row,1,col,&J[0][0],INSERT_VALUES)); 1509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 1519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 1529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U,&u)); 153c4762a1bSJed Brown PetscFunctionReturn(0); 154c4762a1bSJed Brown } 155c4762a1bSJed Brown 156c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */ 157c4762a1bSJed Brown static PetscErrorCode Monitor(TS ts,PetscInt step,PetscReal t,Vec U,void *ctx) 158c4762a1bSJed Brown { 159c4762a1bSJed Brown const PetscScalar *u; 160c4762a1bSJed Brown PetscReal tfinal, dt; 161c4762a1bSJed Brown User user = (User)ctx; 162c4762a1bSJed Brown Vec interpolatedU; 163c4762a1bSJed Brown 164c4762a1bSJed Brown PetscFunctionBeginUser; 1659566063dSJacob Faibussowitsch PetscCall(TSGetTimeStep(ts,&dt)); 1669566063dSJacob Faibussowitsch PetscCall(TSGetMaxTime(ts,&tfinal)); 167c4762a1bSJed Brown 168c4762a1bSJed Brown while (user->next_output <= t && user->next_output <= tfinal) { 1699566063dSJacob Faibussowitsch PetscCall(VecDuplicate(U,&interpolatedU)); 1709566063dSJacob Faibussowitsch PetscCall(TSInterpolate(ts,user->next_output,interpolatedU)); 1719566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(interpolatedU,&u)); 17263a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD,"[%g] %" PetscInt_FMT " TS %g (dt = %g) X %g %g\n", 17363a3b9bcSJacob Faibussowitsch (double)user->next_output,step,(double)t,(double)dt, 17463a3b9bcSJacob Faibussowitsch (double)PetscRealPart(u[0]),(double)PetscRealPart(u[1]))); 1759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(interpolatedU,&u)); 1769566063dSJacob Faibussowitsch PetscCall(VecDestroy(&interpolatedU)); 177c4762a1bSJed Brown user->next_output += 0.1; 178c4762a1bSJed Brown } 179c4762a1bSJed Brown PetscFunctionReturn(0); 180c4762a1bSJed Brown } 181c4762a1bSJed Brown 182c4762a1bSJed Brown int main(int argc,char **argv) 183c4762a1bSJed Brown { 184c4762a1bSJed Brown TS ts; 185c4762a1bSJed Brown PetscBool monitor = PETSC_FALSE,implicitform = PETSC_TRUE; 186c4762a1bSJed Brown PetscScalar *x_ptr,*y_ptr,derp; 187c4762a1bSJed Brown PetscMPIInt size; 188c4762a1bSJed Brown struct _n_User user; 189c4762a1bSJed Brown 190c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 191c4762a1bSJed Brown Initialize program 192c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 193*327415f7SBarry Smith PetscFunctionBeginUser; 1949566063dSJacob Faibussowitsch PetscCall(PetscInitialize(&argc,&argv,NULL,help)); 1959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PETSC_COMM_WORLD,&size)); 1963c633725SBarry Smith PetscCheck(size == 1,PETSC_COMM_WORLD,PETSC_ERR_WRONG_MPI_SIZE,"This is a uniprocessor example only!"); 197c4762a1bSJed Brown 198c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 199c4762a1bSJed Brown Set runtime options 200c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 201c4762a1bSJed Brown user.next_output = 0.0; 202c4762a1bSJed Brown user.mu = 1.0e3; 203c4762a1bSJed Brown user.steps = 0; 204c4762a1bSJed Brown user.ftime = 0.5; 2059566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL,NULL,"-monitor",&monitor,NULL)); 2069566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(NULL,NULL,"-mu",&user.mu,NULL)); 2079566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL,NULL,"-implicitform",&implicitform,NULL)); 208c4762a1bSJed Brown 209c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 210c4762a1bSJed Brown Create necessary matrix and vectors, solve same ODE on every process 211c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2129566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_WORLD,&user.A)); 2139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(user.A,PETSC_DECIDE,PETSC_DECIDE,2,2)); 2149566063dSJacob Faibussowitsch PetscCall(MatSetFromOptions(user.A)); 2159566063dSJacob Faibussowitsch PetscCall(MatSetUp(user.A)); 2169566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A,&user.U,NULL)); 217c4762a1bSJed Brown 2189566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_WORLD,&user.Jacp)); 2199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(user.Jacp,PETSC_DECIDE,PETSC_DECIDE,2,1)); 2209566063dSJacob Faibussowitsch PetscCall(MatSetFromOptions(user.Jacp)); 2219566063dSJacob Faibussowitsch PetscCall(MatSetUp(user.Jacp)); 222c4762a1bSJed Brown 223c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 224c4762a1bSJed Brown Create timestepping solver context 225c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2269566063dSJacob Faibussowitsch PetscCall(TSCreate(PETSC_COMM_WORLD,&ts)); 2279566063dSJacob Faibussowitsch PetscCall(TSSetEquationType(ts,TS_EQ_ODE_EXPLICIT)); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */ 228c4762a1bSJed Brown if (implicitform) { 2299566063dSJacob Faibussowitsch PetscCall(TSSetIFunction(ts,NULL,IFunction,&user)); 2309566063dSJacob Faibussowitsch PetscCall(TSSetIJacobian(ts,user.A,user.A,IJacobian,&user)); 2319566063dSJacob Faibussowitsch PetscCall(TSSetType(ts,TSCN)); 232c4762a1bSJed Brown } else { 2339566063dSJacob Faibussowitsch PetscCall(TSSetRHSFunction(ts,NULL,RHSFunction,&user)); 2349566063dSJacob Faibussowitsch PetscCall(TSSetRHSJacobian(ts,user.A,user.A,RHSJacobian,&user)); 2359566063dSJacob Faibussowitsch PetscCall(TSSetType(ts,TSRK)); 236c4762a1bSJed Brown } 2379566063dSJacob Faibussowitsch PetscCall(TSSetRHSJacobianP(ts,user.Jacp,RHSJacobianP,&user)); 2389566063dSJacob Faibussowitsch PetscCall(TSSetMaxTime(ts,user.ftime)); 2399566063dSJacob Faibussowitsch PetscCall(TSSetTimeStep(ts,0.001)); 2409566063dSJacob Faibussowitsch PetscCall(TSSetExactFinalTime(ts,TS_EXACTFINALTIME_MATCHSTEP)); 2419566063dSJacob Faibussowitsch if (monitor) PetscCall(TSMonitorSet(ts,Monitor,&user,NULL)); 242c4762a1bSJed Brown 243c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 244c4762a1bSJed Brown Set initial conditions 245c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2469566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.U,&x_ptr)); 247c4762a1bSJed Brown x_ptr[0] = 2.0; 248c4762a1bSJed Brown x_ptr[1] = -2.0/3.0 + 10.0/(81.0*user.mu) - 292.0/(2187.0*user.mu*user.mu); 2499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.U,&x_ptr)); 2509566063dSJacob Faibussowitsch PetscCall(TSSetTimeStep(ts,0.001)); 251c4762a1bSJed Brown 252c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 253c4762a1bSJed Brown Save trajectory of solution so that TSAdjointSolve() may be used 254c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2559566063dSJacob Faibussowitsch PetscCall(TSSetSaveTrajectory(ts)); 256c4762a1bSJed Brown 257c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 258c4762a1bSJed Brown Set runtime options 259c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2609566063dSJacob Faibussowitsch PetscCall(TSSetFromOptions(ts)); 261c4762a1bSJed Brown 2629566063dSJacob Faibussowitsch PetscCall(TSSolve(ts,user.U)); 2639566063dSJacob Faibussowitsch PetscCall(TSGetSolveTime(ts,&user.ftime)); 2649566063dSJacob Faibussowitsch PetscCall(TSGetStepNumber(ts,&user.steps)); 265c4762a1bSJed Brown 266c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 267c4762a1bSJed Brown Adjoint model starts here 268c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2699566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A,&user.lambda[0],NULL)); 270c4762a1bSJed Brown /* Set initial conditions for the adjoint integration */ 2719566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[0],&y_ptr)); 272c4762a1bSJed Brown y_ptr[0] = 1.0; y_ptr[1] = 0.0; 2739566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[0],&y_ptr)); 2749566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A,&user.lambda[1],NULL)); 2759566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[1],&y_ptr)); 276c4762a1bSJed Brown y_ptr[0] = 0.0; y_ptr[1] = 1.0; 2779566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[1],&y_ptr)); 278c4762a1bSJed Brown 2799566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.Jacp,&user.mup[0],NULL)); 2809566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[0],&x_ptr)); 281c4762a1bSJed Brown x_ptr[0] = 0.0; 2829566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[0],&x_ptr)); 2839566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.Jacp,&user.mup[1],NULL)); 2849566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[1],&x_ptr)); 285c4762a1bSJed Brown x_ptr[0] = 0.0; 2869566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[1],&x_ptr)); 287c4762a1bSJed Brown 2889566063dSJacob Faibussowitsch PetscCall(TSSetCostGradients(ts,2,user.lambda,user.mup)); 289c4762a1bSJed Brown 2909566063dSJacob Faibussowitsch PetscCall(TSAdjointSolve(ts)); 291c4762a1bSJed Brown 2929566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[y(tf)]/d[y0] d[y(tf)]/d[z0]\n")); 2939566063dSJacob Faibussowitsch PetscCall(VecView(user.lambda[0],PETSC_VIEWER_STDOUT_WORLD)); 2949566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[z(tf)]/d[y0] d[z(tf)]/d[z0]\n")); 2959566063dSJacob Faibussowitsch PetscCall(VecView(user.lambda[1],PETSC_VIEWER_STDOUT_WORLD)); 296c4762a1bSJed Brown 2979566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[0],&x_ptr)); 2989566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[0],&y_ptr)); 299c4762a1bSJed Brown derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0]; 3009566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[0],&x_ptr)); 3019566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[0],&y_ptr)); 3029566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt parameters: d[y(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp))); 303c4762a1bSJed Brown 3049566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[1],&x_ptr)); 3059566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[1],&y_ptr)); 306c4762a1bSJed Brown derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0]; 3079566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[1],&x_ptr)); 3089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[1],&y_ptr)); 3099566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensivitity wrt parameters: d[z(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp))); 310c4762a1bSJed Brown 311c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 312c4762a1bSJed Brown Free work space. All PETSc objects should be destroyed when they 313c4762a1bSJed Brown are no longer needed. 314c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 3159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&user.A)); 3169566063dSJacob Faibussowitsch PetscCall(MatDestroy(&user.Jacp)); 3179566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.U)); 3189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.lambda[0])); 3199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.lambda[1])); 3209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.mup[0])); 3219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.mup[1])); 3229566063dSJacob Faibussowitsch PetscCall(TSDestroy(&ts)); 323c4762a1bSJed Brown 3249566063dSJacob Faibussowitsch PetscCall(PetscFinalize()); 325b122ec5aSJacob Faibussowitsch return 0; 326c4762a1bSJed Brown } 327c4762a1bSJed Brown 328c4762a1bSJed Brown /*TEST 329c4762a1bSJed Brown 330c4762a1bSJed Brown test: 331c4762a1bSJed Brown requires: revolve 332c4762a1bSJed Brown args: -monitor 0 -ts_type theta -ts_theta_endpoint -ts_theta_theta 0.5 -viewer_binary_skip_info -ts_dt 0.001 -mu 100000 333c4762a1bSJed Brown 334c4762a1bSJed Brown test: 335c4762a1bSJed Brown suffix: 2 336c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 337c4762a1bSJed Brown 338c4762a1bSJed Brown test: 339c4762a1bSJed Brown suffix: 3 340c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 0 341c4762a1bSJed Brown output_file: output/ex20adj_2.out 342c4762a1bSJed Brown 343c4762a1bSJed Brown test: 344c4762a1bSJed Brown suffix: 4 345c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 346c4762a1bSJed Brown output_file: output/ex20adj_2.out 347c4762a1bSJed Brown 348c4762a1bSJed Brown test: 349c4762a1bSJed Brown suffix: 5 350c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 351c4762a1bSJed Brown output_file: output/ex20adj_2.out 352c4762a1bSJed Brown 353c4762a1bSJed Brown test: 354c4762a1bSJed Brown suffix: 6 355c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 356c4762a1bSJed Brown output_file: output/ex20adj_2.out 357c4762a1bSJed Brown 358c4762a1bSJed Brown test: 359c4762a1bSJed Brown suffix: 7 360c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 361c4762a1bSJed Brown output_file: output/ex20adj_2.out 362c4762a1bSJed Brown 363c4762a1bSJed Brown test: 364c4762a1bSJed Brown suffix: 8 36560f0b76eSHong Zhang requires: revolve !cams 366c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor 367c4762a1bSJed Brown output_file: output/ex20adj_3.out 368c4762a1bSJed Brown 369c4762a1bSJed Brown test: 370c4762a1bSJed Brown suffix: 9 37160f0b76eSHong Zhang requires: revolve !cams 372c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor 373c4762a1bSJed Brown output_file: output/ex20adj_4.out 374c4762a1bSJed Brown 375c4762a1bSJed Brown test: 376c4762a1bSJed Brown requires: revolve 377c4762a1bSJed Brown suffix: 10 378c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 379c4762a1bSJed Brown output_file: output/ex20adj_2.out 380c4762a1bSJed Brown 381c4762a1bSJed Brown test: 382c4762a1bSJed Brown requires: revolve 383c4762a1bSJed Brown suffix: 11 384c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 0 385c4762a1bSJed Brown output_file: output/ex20adj_2.out 386c4762a1bSJed Brown 387c4762a1bSJed Brown test: 388c4762a1bSJed Brown suffix: 12 389c4762a1bSJed Brown requires: revolve 390c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 391c4762a1bSJed Brown output_file: output/ex20adj_2.out 392c4762a1bSJed Brown 393c4762a1bSJed Brown test: 394c4762a1bSJed Brown suffix: 13 395c4762a1bSJed Brown requires: revolve 396c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 397c4762a1bSJed Brown output_file: output/ex20adj_2.out 398c4762a1bSJed Brown 399c4762a1bSJed Brown test: 400c4762a1bSJed Brown suffix: 14 401c4762a1bSJed Brown requires: revolve 402c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 403c4762a1bSJed Brown output_file: output/ex20adj_2.out 404c4762a1bSJed Brown 405c4762a1bSJed Brown test: 406c4762a1bSJed Brown suffix: 15 407c4762a1bSJed Brown requires: revolve 408c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 409c4762a1bSJed Brown output_file: output/ex20adj_2.out 410c4762a1bSJed Brown 411c4762a1bSJed Brown test: 412c4762a1bSJed Brown suffix: 16 413c4762a1bSJed Brown requires: revolve 414c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 415c4762a1bSJed Brown output_file: output/ex20adj_2.out 416c4762a1bSJed Brown 417c4762a1bSJed Brown test: 418c4762a1bSJed Brown suffix: 17 419c4762a1bSJed Brown requires: revolve 420c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 421c4762a1bSJed Brown output_file: output/ex20adj_2.out 422c4762a1bSJed Brown 423c4762a1bSJed Brown test: 424c4762a1bSJed Brown suffix: 18 425c4762a1bSJed Brown requires: revolve 426c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 427c4762a1bSJed Brown output_file: output/ex20adj_2.out 428c4762a1bSJed Brown 429c4762a1bSJed Brown test: 430c4762a1bSJed Brown suffix: 19 431c4762a1bSJed Brown requires: revolve 432c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 433c4762a1bSJed Brown output_file: output/ex20adj_2.out 434c4762a1bSJed Brown 435c4762a1bSJed Brown test: 436c4762a1bSJed Brown suffix: 20 437c4762a1bSJed Brown requires: revolve 438c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 439c4762a1bSJed Brown output_file: output/ex20adj_2.out 440c4762a1bSJed Brown 441c4762a1bSJed Brown test: 442c4762a1bSJed Brown suffix: 21 443c4762a1bSJed Brown requires: revolve 444c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 445c4762a1bSJed Brown output_file: output/ex20adj_2.out 446c4762a1bSJed Brown 447c4762a1bSJed Brown test: 448c4762a1bSJed Brown suffix: 22 449c4762a1bSJed Brown args: -ts_type beuler -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 450c4762a1bSJed Brown output_file: output/ex20adj_2.out 451cc4f23bcSHong Zhang 452cc4f23bcSHong Zhang test: 453cc4f23bcSHong Zhang suffix: 23 454cc4f23bcSHong Zhang requires: cams 455533251d3SHong Zhang args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor -ts_trajectory_memory_type cams 45660f0b76eSHong Zhang output_file: output/ex20adj_5.out 457cc4f23bcSHong Zhang 458cc4f23bcSHong Zhang test: 459cc4f23bcSHong Zhang suffix: 24 460cc4f23bcSHong Zhang requires: cams 461533251d3SHong Zhang args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor -ts_trajectory_memory_type cams 46260f0b76eSHong Zhang output_file: output/ex20adj_6.out 463cc4f23bcSHong Zhang 464c4762a1bSJed Brown TEST*/ 465