1c4762a1bSJed Brown static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n"; 2c4762a1bSJed Brown 3c4762a1bSJed Brown /* 4c4762a1bSJed Brown Concepts: TS^time-dependent nonlinear problems 5c4762a1bSJed Brown Concepts: TS^van der Pol equation DAE equivalent 6c4762a1bSJed Brown Concepts: TS^adjoint sensitivity analysis 7c4762a1bSJed Brown Processors: 1 8c4762a1bSJed Brown */ 9c4762a1bSJed Brown /* ------------------------------------------------------------------------ 10c4762a1bSJed Brown 11c4762a1bSJed Brown This program solves the van der Pol DAE ODE equivalent 12c4762a1bSJed Brown [ u_1' ] = [ u_2 ] (2) 13c4762a1bSJed Brown [ u_2' ] [ \mu ((1 - u_1^2) u_2 - u_1) ] 14c4762a1bSJed Brown on the domain 0 <= x <= 1, with the boundary conditions 15c4762a1bSJed Brown u_1(0) = 2, u_2(0) = - 2/3 +10/(81*\mu) - 292/(2187*\mu^2), 16c4762a1bSJed Brown and 17c4762a1bSJed Brown \mu = 10^6 ( y'(0) ~ -0.6666665432100101)., 18c4762a1bSJed Brown and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with the implicit theta method and its discrete adjoint. 19c4762a1bSJed Brown 20c4762a1bSJed Brown Notes: 21c4762a1bSJed Brown This code demonstrates the TSAdjoint interface to a DAE system. 22c4762a1bSJed Brown 23c4762a1bSJed Brown The user provides the implicit right-hand-side function 24*5ab1ac2bSHong Zhang [ F(u',u,t) ] = [u' - f(u,t)] = [ u_1'] - [ u_2 ] 25c4762a1bSJed Brown [ u_2'] [ \mu ((1-u_1^2)u_2-u_1) ] 26c4762a1bSJed Brown 27*5ab1ac2bSHong Zhang and the Jacobian of F (from the PETSc user manual) 28c4762a1bSJed Brown 29*5ab1ac2bSHong Zhang dF dF 30*5ab1ac2bSHong Zhang J(F) = a * -- + -- 31c4762a1bSJed Brown du' du 32c4762a1bSJed Brown 33*5ab1ac2bSHong Zhang and the JacobianP of the explicit right-hand side of (2) f(u,t) ( which is equivalent to -F(0,u,t) ). 34c4762a1bSJed Brown df [ 0 ] 35c4762a1bSJed Brown -- = [ ] 36c4762a1bSJed Brown dp [ (1 - u_1^2) u_2 - u_1 ]. 37c4762a1bSJed Brown 38c4762a1bSJed Brown See ex20.c for more details on the Jacobian. 39c4762a1bSJed Brown 40c4762a1bSJed Brown ------------------------------------------------------------------------- */ 41c4762a1bSJed Brown #include <petscts.h> 42c4762a1bSJed Brown #include <petsctao.h> 43c4762a1bSJed Brown 44c4762a1bSJed Brown typedef struct _n_User *User; 45c4762a1bSJed Brown struct _n_User { 46c4762a1bSJed Brown PetscReal mu; 47c4762a1bSJed Brown PetscReal next_output; 48c4762a1bSJed Brown 49c4762a1bSJed Brown /* Sensitivity analysis support */ 50c4762a1bSJed Brown PetscInt steps; 51c4762a1bSJed Brown PetscReal ftime; 52c4762a1bSJed Brown Mat A; /* Jacobian matrix */ 53c4762a1bSJed Brown Mat Jacp; /* JacobianP matrix */ 54c4762a1bSJed Brown Vec U,lambda[2],mup[2]; /* adjoint variables */ 55c4762a1bSJed Brown }; 56c4762a1bSJed Brown 57c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE -------------------- */ 58c4762a1bSJed Brown 59c4762a1bSJed Brown static PetscErrorCode RHSFunction(TS ts,PetscReal t,Vec U,Vec F,void *ctx) 60c4762a1bSJed Brown { 61c4762a1bSJed Brown PetscErrorCode ierr; 62c4762a1bSJed Brown User user = (User)ctx; 63c4762a1bSJed Brown PetscScalar *f; 64c4762a1bSJed Brown const PetscScalar *u; 65c4762a1bSJed Brown 66c4762a1bSJed Brown PetscFunctionBeginUser; 67c4762a1bSJed Brown ierr = VecGetArrayRead(U,&u);CHKERRQ(ierr); 68c4762a1bSJed Brown ierr = VecGetArray(F,&f);CHKERRQ(ierr); 69c4762a1bSJed Brown f[0] = u[1]; 70c4762a1bSJed Brown f[1] = user->mu*((1.-u[0]*u[0])*u[1]-u[0]); 71c4762a1bSJed Brown ierr = VecRestoreArrayRead(U,&u);CHKERRQ(ierr); 72c4762a1bSJed Brown ierr = VecRestoreArray(F,&f);CHKERRQ(ierr); 73c4762a1bSJed Brown PetscFunctionReturn(0); 74c4762a1bSJed Brown } 75c4762a1bSJed Brown 76c4762a1bSJed Brown static PetscErrorCode RHSJacobian(TS ts,PetscReal t,Vec U,Mat A,Mat B,void *ctx) 77c4762a1bSJed Brown { 78c4762a1bSJed Brown PetscErrorCode ierr; 79c4762a1bSJed Brown User user = (User)ctx; 80c4762a1bSJed Brown PetscReal mu = user->mu; 81c4762a1bSJed Brown PetscInt rowcol[] = {0,1}; 82c4762a1bSJed Brown PetscScalar J[2][2]; 83c4762a1bSJed Brown const PetscScalar *u; 84c4762a1bSJed Brown 85c4762a1bSJed Brown PetscFunctionBeginUser; 86c4762a1bSJed Brown ierr = VecGetArrayRead(U,&u);CHKERRQ(ierr); 87c4762a1bSJed Brown J[0][0] = 0; 88c4762a1bSJed Brown J[1][0] = -mu*(2.0*u[1]*u[0]+1.); 89c4762a1bSJed Brown J[0][1] = 1.0; 90c4762a1bSJed Brown J[1][1] = mu*(1.0-u[0]*u[0]); 91c4762a1bSJed Brown ierr = MatSetValues(A,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES);CHKERRQ(ierr); 92c4762a1bSJed Brown ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 93c4762a1bSJed Brown ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 94c4762a1bSJed Brown if (A != B) { 95c4762a1bSJed Brown ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 96c4762a1bSJed Brown ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 97c4762a1bSJed Brown } 98c4762a1bSJed Brown ierr = VecRestoreArrayRead(U,&u);CHKERRQ(ierr); 99c4762a1bSJed Brown PetscFunctionReturn(0); 100c4762a1bSJed Brown } 101c4762a1bSJed Brown 102c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE -------------------- */ 103c4762a1bSJed Brown 104c4762a1bSJed Brown static PetscErrorCode IFunction(TS ts,PetscReal t,Vec U,Vec Udot,Vec F,void *ctx) 105c4762a1bSJed Brown { 106c4762a1bSJed Brown PetscErrorCode ierr; 107c4762a1bSJed Brown User user = (User)ctx; 108c4762a1bSJed Brown const PetscScalar *u,*udot; 109c4762a1bSJed Brown PetscScalar *f; 110c4762a1bSJed Brown 111c4762a1bSJed Brown PetscFunctionBeginUser; 112c4762a1bSJed Brown ierr = VecGetArrayRead(U,&u);CHKERRQ(ierr); 113c4762a1bSJed Brown ierr = VecGetArrayRead(Udot,&udot);CHKERRQ(ierr); 114c4762a1bSJed Brown ierr = VecGetArray(F,&f);CHKERRQ(ierr); 115c4762a1bSJed Brown f[0] = udot[0] - u[1]; 116c4762a1bSJed Brown f[1] = udot[1] - user->mu*((1.0-u[0]*u[0])*u[1] - u[0]); 117c4762a1bSJed Brown ierr = VecRestoreArrayRead(U,&u);CHKERRQ(ierr); 118c4762a1bSJed Brown ierr = VecRestoreArrayRead(Udot,&udot);CHKERRQ(ierr); 119c4762a1bSJed Brown ierr = VecRestoreArray(F,&f);CHKERRQ(ierr); 120c4762a1bSJed Brown PetscFunctionReturn(0); 121c4762a1bSJed Brown } 122c4762a1bSJed Brown 123c4762a1bSJed Brown static PetscErrorCode IJacobian(TS ts,PetscReal t,Vec U,Vec Udot,PetscReal a,Mat A,Mat B,void *ctx) 124c4762a1bSJed Brown { 125c4762a1bSJed Brown PetscErrorCode ierr; 126c4762a1bSJed Brown User user = (User)ctx; 127c4762a1bSJed Brown PetscInt rowcol[] = {0,1}; 128c4762a1bSJed Brown PetscScalar J[2][2]; 129c4762a1bSJed Brown const PetscScalar *u; 130c4762a1bSJed Brown 131c4762a1bSJed Brown PetscFunctionBeginUser; 132c4762a1bSJed Brown ierr = VecGetArrayRead(U,&u);CHKERRQ(ierr); 133c4762a1bSJed Brown 134c4762a1bSJed Brown J[0][0] = a; J[0][1] = -1.0; 135c4762a1bSJed Brown J[1][0] = user->mu*(2.0*u[0]*u[1] + 1.0); J[1][1] = a - user->mu*(1.0-u[0]*u[0]); 136c4762a1bSJed Brown 137c4762a1bSJed Brown ierr = MatSetValues(B,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES);CHKERRQ(ierr); 138c4762a1bSJed Brown ierr = VecRestoreArrayRead(U,&u);CHKERRQ(ierr); 139c4762a1bSJed Brown 140c4762a1bSJed Brown ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 141c4762a1bSJed Brown ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 142c4762a1bSJed Brown if (B && A != B) { 143c4762a1bSJed Brown ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 144c4762a1bSJed Brown ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 145c4762a1bSJed Brown } 146c4762a1bSJed Brown PetscFunctionReturn(0); 147c4762a1bSJed Brown } 148c4762a1bSJed Brown 149c4762a1bSJed Brown static PetscErrorCode RHSJacobianP(TS ts,PetscReal t,Vec U,Mat A,void *ctx) 150c4762a1bSJed Brown { 151c4762a1bSJed Brown PetscErrorCode ierr; 152c4762a1bSJed Brown PetscInt row[] = {0,1},col[]={0}; 153c4762a1bSJed Brown PetscScalar J[2][1]; 154c4762a1bSJed Brown const PetscScalar *u; 155c4762a1bSJed Brown 156c4762a1bSJed Brown PetscFunctionBeginUser; 157c4762a1bSJed Brown ierr = VecGetArrayRead(U,&u);CHKERRQ(ierr); 158c4762a1bSJed Brown J[0][0] = 0; 159c4762a1bSJed Brown J[1][0] = (1.-u[0]*u[0])*u[1]-u[0]; 160c4762a1bSJed Brown ierr = MatSetValues(A,2,row,1,col,&J[0][0],INSERT_VALUES);CHKERRQ(ierr); 161c4762a1bSJed Brown ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 162c4762a1bSJed Brown ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 163c4762a1bSJed Brown ierr = VecRestoreArrayRead(U,&u);CHKERRQ(ierr); 164c4762a1bSJed Brown PetscFunctionReturn(0); 165c4762a1bSJed Brown } 166c4762a1bSJed Brown 167c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */ 168c4762a1bSJed Brown static PetscErrorCode Monitor(TS ts,PetscInt step,PetscReal t,Vec U,void *ctx) 169c4762a1bSJed Brown { 170c4762a1bSJed Brown PetscErrorCode ierr; 171c4762a1bSJed Brown const PetscScalar *u; 172c4762a1bSJed Brown PetscReal tfinal, dt; 173c4762a1bSJed Brown User user = (User)ctx; 174c4762a1bSJed Brown Vec interpolatedU; 175c4762a1bSJed Brown 176c4762a1bSJed Brown PetscFunctionBeginUser; 177c4762a1bSJed Brown ierr = TSGetTimeStep(ts,&dt);CHKERRQ(ierr); 178c4762a1bSJed Brown ierr = TSGetMaxTime(ts,&tfinal);CHKERRQ(ierr); 179c4762a1bSJed Brown 180c4762a1bSJed Brown while (user->next_output <= t && user->next_output <= tfinal) { 181c4762a1bSJed Brown ierr = VecDuplicate(U,&interpolatedU);CHKERRQ(ierr); 182c4762a1bSJed Brown ierr = TSInterpolate(ts,user->next_output,interpolatedU);CHKERRQ(ierr); 183c4762a1bSJed Brown ierr = VecGetArrayRead(interpolatedU,&u);CHKERRQ(ierr); 184c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD,"[%g] %D TS %g (dt = %g) X %g %g\n", 185c4762a1bSJed Brown (double)user->next_output,step,(double)t,(double)dt,(double)PetscRealPart(u[0]), 186c4762a1bSJed Brown (double)PetscRealPart(u[1]));CHKERRQ(ierr); 187c4762a1bSJed Brown ierr = VecRestoreArrayRead(interpolatedU,&u);CHKERRQ(ierr); 188c4762a1bSJed Brown ierr = VecDestroy(&interpolatedU);CHKERRQ(ierr); 189c4762a1bSJed Brown user->next_output += 0.1; 190c4762a1bSJed Brown } 191c4762a1bSJed Brown PetscFunctionReturn(0); 192c4762a1bSJed Brown } 193c4762a1bSJed Brown 194c4762a1bSJed Brown int main(int argc,char **argv) 195c4762a1bSJed Brown { 196c4762a1bSJed Brown TS ts; 197c4762a1bSJed Brown PetscBool monitor = PETSC_FALSE,implicitform = PETSC_TRUE; 198c4762a1bSJed Brown PetscScalar *x_ptr,*y_ptr,derp; 199c4762a1bSJed Brown PetscMPIInt size; 200c4762a1bSJed Brown struct _n_User user; 201c4762a1bSJed Brown PetscErrorCode ierr; 202c4762a1bSJed Brown 203c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 204c4762a1bSJed Brown Initialize program 205c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 206c4762a1bSJed Brown ierr = PetscInitialize(&argc,&argv,NULL,help);if (ierr) return ierr; 207c4762a1bSJed Brown ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 208c4762a1bSJed Brown if (size != 1) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_WRONG_MPI_SIZE,"This is a uniprocessor example only!"); 209c4762a1bSJed Brown 210c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 211c4762a1bSJed Brown Set runtime options 212c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 213c4762a1bSJed Brown user.next_output = 0.0; 214c4762a1bSJed Brown user.mu = 1.0e3; 215c4762a1bSJed Brown user.steps = 0; 216c4762a1bSJed Brown user.ftime = 0.5; 217c4762a1bSJed Brown ierr = PetscOptionsGetBool(NULL,NULL,"-monitor",&monitor,NULL);CHKERRQ(ierr); 218c4762a1bSJed Brown ierr = PetscOptionsGetReal(NULL,NULL,"-mu",&user.mu,NULL);CHKERRQ(ierr); 219c4762a1bSJed Brown ierr = PetscOptionsGetBool(NULL,NULL,"-implicitform",&implicitform,NULL);CHKERRQ(ierr); 220c4762a1bSJed Brown 221c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 222c4762a1bSJed Brown Create necessary matrix and vectors, solve same ODE on every process 223c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 224c4762a1bSJed Brown ierr = MatCreate(PETSC_COMM_WORLD,&user.A);CHKERRQ(ierr); 225c4762a1bSJed Brown ierr = MatSetSizes(user.A,PETSC_DECIDE,PETSC_DECIDE,2,2);CHKERRQ(ierr); 226c4762a1bSJed Brown ierr = MatSetFromOptions(user.A);CHKERRQ(ierr); 227c4762a1bSJed Brown ierr = MatSetUp(user.A);CHKERRQ(ierr); 228c4762a1bSJed Brown ierr = MatCreateVecs(user.A,&user.U,NULL);CHKERRQ(ierr); 229c4762a1bSJed Brown 230c4762a1bSJed Brown ierr = MatCreate(PETSC_COMM_WORLD,&user.Jacp);CHKERRQ(ierr); 231c4762a1bSJed Brown ierr = MatSetSizes(user.Jacp,PETSC_DECIDE,PETSC_DECIDE,2,1);CHKERRQ(ierr); 232c4762a1bSJed Brown ierr = MatSetFromOptions(user.Jacp);CHKERRQ(ierr); 233c4762a1bSJed Brown ierr = MatSetUp(user.Jacp);CHKERRQ(ierr); 234c4762a1bSJed Brown 235c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 236c4762a1bSJed Brown Create timestepping solver context 237c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 238c4762a1bSJed Brown ierr = TSCreate(PETSC_COMM_WORLD,&ts);CHKERRQ(ierr); 239c4762a1bSJed Brown ierr = TSSetEquationType(ts,TS_EQ_ODE_EXPLICIT);CHKERRQ(ierr); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */ 240c4762a1bSJed Brown if (implicitform) { 241c4762a1bSJed Brown ierr = TSSetIFunction(ts,NULL,IFunction,&user);CHKERRQ(ierr); 242c4762a1bSJed Brown ierr = TSSetIJacobian(ts,user.A,user.A,IJacobian,&user);CHKERRQ(ierr); 243c4762a1bSJed Brown ierr = TSSetType(ts,TSCN);CHKERRQ(ierr); 244c4762a1bSJed Brown } else { 245c4762a1bSJed Brown ierr = TSSetRHSFunction(ts,NULL,RHSFunction,&user);CHKERRQ(ierr); 246c4762a1bSJed Brown ierr = TSSetRHSJacobian(ts,user.A,user.A,RHSJacobian,&user);CHKERRQ(ierr); 247c4762a1bSJed Brown ierr = TSSetType(ts,TSRK);CHKERRQ(ierr); 248c4762a1bSJed Brown } 249c4762a1bSJed Brown ierr = TSSetRHSJacobianP(ts,user.Jacp,RHSJacobianP,&user);CHKERRQ(ierr); 250c4762a1bSJed Brown ierr = TSSetMaxTime(ts,user.ftime);CHKERRQ(ierr); 251c4762a1bSJed Brown ierr = TSSetTimeStep(ts,0.001);CHKERRQ(ierr); 252c4762a1bSJed Brown ierr = TSSetExactFinalTime(ts,TS_EXACTFINALTIME_MATCHSTEP);CHKERRQ(ierr); 253c4762a1bSJed Brown if (monitor) { 254c4762a1bSJed Brown ierr = TSMonitorSet(ts,Monitor,&user,NULL);CHKERRQ(ierr); 255c4762a1bSJed Brown } 256c4762a1bSJed Brown 257c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 258c4762a1bSJed Brown Set initial conditions 259c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 260c4762a1bSJed Brown ierr = VecGetArray(user.U,&x_ptr);CHKERRQ(ierr); 261c4762a1bSJed Brown x_ptr[0] = 2.0; 262c4762a1bSJed Brown x_ptr[1] = -2.0/3.0 + 10.0/(81.0*user.mu) - 292.0/(2187.0*user.mu*user.mu); 263c4762a1bSJed Brown ierr = VecRestoreArray(user.U,&x_ptr);CHKERRQ(ierr); 264c4762a1bSJed Brown ierr = TSSetTimeStep(ts,0.001);CHKERRQ(ierr); 265c4762a1bSJed Brown 266c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 267c4762a1bSJed Brown Save trajectory of solution so that TSAdjointSolve() may be used 268c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 269c4762a1bSJed Brown ierr = TSSetSaveTrajectory(ts);CHKERRQ(ierr); 270c4762a1bSJed Brown 271c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 272c4762a1bSJed Brown Set runtime options 273c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 274c4762a1bSJed Brown ierr = TSSetFromOptions(ts);CHKERRQ(ierr); 275c4762a1bSJed Brown 276c4762a1bSJed Brown ierr = TSSolve(ts,user.U);CHKERRQ(ierr); 277c4762a1bSJed Brown ierr = TSGetSolveTime(ts,&user.ftime);CHKERRQ(ierr); 278c4762a1bSJed Brown ierr = TSGetStepNumber(ts,&user.steps);CHKERRQ(ierr); 279c4762a1bSJed Brown 280c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 281c4762a1bSJed Brown Adjoint model starts here 282c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 283c4762a1bSJed Brown ierr = MatCreateVecs(user.A,&user.lambda[0],NULL);CHKERRQ(ierr); 284c4762a1bSJed Brown /* Set initial conditions for the adjoint integration */ 285c4762a1bSJed Brown ierr = VecGetArray(user.lambda[0],&y_ptr);CHKERRQ(ierr); 286c4762a1bSJed Brown y_ptr[0] = 1.0; y_ptr[1] = 0.0; 287c4762a1bSJed Brown ierr = VecRestoreArray(user.lambda[0],&y_ptr);CHKERRQ(ierr); 288c4762a1bSJed Brown ierr = MatCreateVecs(user.A,&user.lambda[1],NULL);CHKERRQ(ierr); 289c4762a1bSJed Brown ierr = VecGetArray(user.lambda[1],&y_ptr);CHKERRQ(ierr); 290c4762a1bSJed Brown y_ptr[0] = 0.0; y_ptr[1] = 1.0; 291c4762a1bSJed Brown ierr = VecRestoreArray(user.lambda[1],&y_ptr);CHKERRQ(ierr); 292c4762a1bSJed Brown 293c4762a1bSJed Brown ierr = MatCreateVecs(user.Jacp,&user.mup[0],NULL);CHKERRQ(ierr); 294c4762a1bSJed Brown ierr = VecGetArray(user.mup[0],&x_ptr);CHKERRQ(ierr); 295c4762a1bSJed Brown x_ptr[0] = 0.0; 296c4762a1bSJed Brown ierr = VecRestoreArray(user.mup[0],&x_ptr);CHKERRQ(ierr); 297c4762a1bSJed Brown ierr = MatCreateVecs(user.Jacp,&user.mup[1],NULL);CHKERRQ(ierr); 298c4762a1bSJed Brown ierr = VecGetArray(user.mup[1],&x_ptr);CHKERRQ(ierr); 299c4762a1bSJed Brown x_ptr[0] = 0.0; 300c4762a1bSJed Brown ierr = VecRestoreArray(user.mup[1],&x_ptr);CHKERRQ(ierr); 301c4762a1bSJed Brown 302c4762a1bSJed Brown ierr = TSSetCostGradients(ts,2,user.lambda,user.mup);CHKERRQ(ierr); 303c4762a1bSJed Brown 304c4762a1bSJed Brown ierr = TSAdjointSolve(ts);CHKERRQ(ierr); 305c4762a1bSJed Brown 306c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[y(tf)]/d[y0] d[y(tf)]/d[z0]\n");CHKERRQ(ierr); 307c4762a1bSJed Brown ierr = VecView(user.lambda[0],PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 308c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[z(tf)]/d[y0] d[z(tf)]/d[z0]\n");CHKERRQ(ierr); 309c4762a1bSJed Brown ierr = VecView(user.lambda[1],PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 310c4762a1bSJed Brown 311c4762a1bSJed Brown ierr = VecGetArray(user.mup[0],&x_ptr);CHKERRQ(ierr); 312c4762a1bSJed Brown ierr = VecGetArray(user.lambda[0],&y_ptr);CHKERRQ(ierr); 313c4762a1bSJed Brown derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0]; 314c4762a1bSJed Brown ierr = VecRestoreArray(user.mup[0],&x_ptr);CHKERRQ(ierr); 315c4762a1bSJed Brown ierr = VecRestoreArray(user.lambda[0],&y_ptr);CHKERRQ(ierr); 316c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt parameters: d[y(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp));CHKERRQ(ierr); 317c4762a1bSJed Brown 318c4762a1bSJed Brown ierr = VecGetArray(user.mup[1],&x_ptr);CHKERRQ(ierr); 319c4762a1bSJed Brown ierr = VecGetArray(user.lambda[1],&y_ptr);CHKERRQ(ierr); 320c4762a1bSJed Brown derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0]; 321c4762a1bSJed Brown ierr = VecRestoreArray(user.mup[1],&x_ptr);CHKERRQ(ierr); 322c4762a1bSJed Brown ierr = VecRestoreArray(user.lambda[1],&y_ptr);CHKERRQ(ierr); 323c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD,"\n sensivitity wrt parameters: d[z(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp));CHKERRQ(ierr); 324c4762a1bSJed Brown 325c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 326c4762a1bSJed Brown Free work space. All PETSc objects should be destroyed when they 327c4762a1bSJed Brown are no longer needed. 328c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 329c4762a1bSJed Brown ierr = MatDestroy(&user.A);CHKERRQ(ierr); 330c4762a1bSJed Brown ierr = MatDestroy(&user.Jacp);CHKERRQ(ierr); 331c4762a1bSJed Brown ierr = VecDestroy(&user.U);CHKERRQ(ierr); 332c4762a1bSJed Brown ierr = VecDestroy(&user.lambda[0]);CHKERRQ(ierr); 333c4762a1bSJed Brown ierr = VecDestroy(&user.lambda[1]);CHKERRQ(ierr); 334c4762a1bSJed Brown ierr = VecDestroy(&user.mup[0]);CHKERRQ(ierr); 335c4762a1bSJed Brown ierr = VecDestroy(&user.mup[1]);CHKERRQ(ierr); 336c4762a1bSJed Brown ierr = TSDestroy(&ts);CHKERRQ(ierr); 337c4762a1bSJed Brown 338c4762a1bSJed Brown ierr = PetscFinalize(); 339c4762a1bSJed Brown return(ierr); 340c4762a1bSJed Brown } 341c4762a1bSJed Brown 342c4762a1bSJed Brown /*TEST 343c4762a1bSJed Brown 344c4762a1bSJed Brown test: 345c4762a1bSJed Brown requires: revolve 346c4762a1bSJed Brown args: -monitor 0 -ts_type theta -ts_theta_endpoint -ts_theta_theta 0.5 -viewer_binary_skip_info -ts_dt 0.001 -mu 100000 347c4762a1bSJed Brown 348c4762a1bSJed Brown test: 349c4762a1bSJed Brown suffix: 2 350c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 351c4762a1bSJed Brown 352c4762a1bSJed Brown test: 353c4762a1bSJed Brown suffix: 3 354c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 0 355c4762a1bSJed Brown output_file: output/ex20adj_2.out 356c4762a1bSJed Brown 357c4762a1bSJed Brown test: 358c4762a1bSJed Brown suffix: 4 359c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 360c4762a1bSJed Brown output_file: output/ex20adj_2.out 361c4762a1bSJed Brown 362c4762a1bSJed Brown test: 363c4762a1bSJed Brown suffix: 5 364c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 365c4762a1bSJed Brown output_file: output/ex20adj_2.out 366c4762a1bSJed Brown 367c4762a1bSJed Brown test: 368c4762a1bSJed Brown suffix: 6 369c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 370c4762a1bSJed Brown output_file: output/ex20adj_2.out 371c4762a1bSJed Brown 372c4762a1bSJed Brown test: 373c4762a1bSJed Brown suffix: 7 374c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 375c4762a1bSJed Brown output_file: output/ex20adj_2.out 376c4762a1bSJed Brown 377c4762a1bSJed Brown test: 378c4762a1bSJed Brown suffix: 8 379c4762a1bSJed Brown requires: revolve 380c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor 381c4762a1bSJed Brown output_file: output/ex20adj_3.out 382c4762a1bSJed Brown 383c4762a1bSJed Brown test: 384c4762a1bSJed Brown suffix: 9 385c4762a1bSJed Brown requires: revolve 386c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor 387c4762a1bSJed Brown output_file: output/ex20adj_4.out 388c4762a1bSJed Brown 389c4762a1bSJed Brown test: 390c4762a1bSJed Brown requires: revolve 391c4762a1bSJed Brown suffix: 10 392c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 393c4762a1bSJed Brown output_file: output/ex20adj_2.out 394c4762a1bSJed Brown 395c4762a1bSJed Brown test: 396c4762a1bSJed Brown requires: revolve 397c4762a1bSJed Brown suffix: 11 398c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 0 399c4762a1bSJed Brown output_file: output/ex20adj_2.out 400c4762a1bSJed Brown 401c4762a1bSJed Brown test: 402c4762a1bSJed Brown suffix: 12 403c4762a1bSJed Brown requires: revolve 404c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 405c4762a1bSJed Brown output_file: output/ex20adj_2.out 406c4762a1bSJed Brown 407c4762a1bSJed Brown test: 408c4762a1bSJed Brown suffix: 13 409c4762a1bSJed Brown requires: revolve 410c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 411c4762a1bSJed Brown output_file: output/ex20adj_2.out 412c4762a1bSJed Brown 413c4762a1bSJed Brown test: 414c4762a1bSJed Brown suffix: 14 415c4762a1bSJed Brown requires: revolve 416c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 417c4762a1bSJed Brown output_file: output/ex20adj_2.out 418c4762a1bSJed Brown 419c4762a1bSJed Brown test: 420c4762a1bSJed Brown suffix: 15 421c4762a1bSJed Brown requires: revolve 422c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 423c4762a1bSJed Brown output_file: output/ex20adj_2.out 424c4762a1bSJed Brown 425c4762a1bSJed Brown test: 426c4762a1bSJed Brown suffix: 16 427c4762a1bSJed Brown requires: revolve 428c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 429c4762a1bSJed Brown output_file: output/ex20adj_2.out 430c4762a1bSJed Brown 431c4762a1bSJed Brown test: 432c4762a1bSJed Brown suffix: 17 433c4762a1bSJed Brown requires: revolve 434c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 435c4762a1bSJed Brown output_file: output/ex20adj_2.out 436c4762a1bSJed Brown 437c4762a1bSJed Brown test: 438c4762a1bSJed Brown suffix: 18 439c4762a1bSJed Brown requires: revolve 440c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 441c4762a1bSJed Brown output_file: output/ex20adj_2.out 442c4762a1bSJed Brown 443c4762a1bSJed Brown test: 444c4762a1bSJed Brown suffix: 19 445c4762a1bSJed Brown requires: revolve 446c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 447c4762a1bSJed Brown output_file: output/ex20adj_2.out 448c4762a1bSJed Brown 449c4762a1bSJed Brown test: 450c4762a1bSJed Brown suffix: 20 451c4762a1bSJed Brown requires: revolve 452c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 453c4762a1bSJed Brown output_file: output/ex20adj_2.out 454c4762a1bSJed Brown 455c4762a1bSJed Brown test: 456c4762a1bSJed Brown suffix: 21 457c4762a1bSJed Brown requires: revolve 458c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 459c4762a1bSJed Brown output_file: output/ex20adj_2.out 460c4762a1bSJed Brown 461c4762a1bSJed Brown test: 462c4762a1bSJed Brown suffix: 22 463c4762a1bSJed Brown args: -ts_type beuler -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 464c4762a1bSJed Brown output_file: output/ex20adj_2.out 465c4762a1bSJed Brown TEST*/ 466