1c4762a1bSJed Brown static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n"; 2c4762a1bSJed Brown 3c4762a1bSJed Brown /* 4c4762a1bSJed Brown Concepts: TS^time-dependent nonlinear problems 5c4762a1bSJed Brown Concepts: TS^van der Pol equation DAE equivalent 6c4762a1bSJed Brown Concepts: TS^adjoint sensitivity analysis 7c4762a1bSJed Brown Processors: 1 8c4762a1bSJed Brown */ 9c4762a1bSJed Brown /* ------------------------------------------------------------------------ 10c4762a1bSJed Brown 11c4762a1bSJed Brown This program solves the van der Pol DAE ODE equivalent 12c4762a1bSJed Brown [ u_1' ] = [ u_2 ] (2) 13c4762a1bSJed Brown [ u_2' ] [ \mu ((1 - u_1^2) u_2 - u_1) ] 14c4762a1bSJed Brown on the domain 0 <= x <= 1, with the boundary conditions 15c4762a1bSJed Brown u_1(0) = 2, u_2(0) = - 2/3 +10/(81*\mu) - 292/(2187*\mu^2), 16c4762a1bSJed Brown and 17c4762a1bSJed Brown \mu = 10^6 ( y'(0) ~ -0.6666665432100101)., 18c4762a1bSJed Brown and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with the implicit theta method and its discrete adjoint. 19c4762a1bSJed Brown 20c4762a1bSJed Brown Notes: 21c4762a1bSJed Brown This code demonstrates the TSAdjoint interface to a DAE system. 22c4762a1bSJed Brown 23c4762a1bSJed Brown The user provides the implicit right-hand-side function 245ab1ac2bSHong Zhang [ F(u',u,t) ] = [u' - f(u,t)] = [ u_1'] - [ u_2 ] 25c4762a1bSJed Brown [ u_2'] [ \mu ((1-u_1^2)u_2-u_1) ] 26c4762a1bSJed Brown 275ab1ac2bSHong Zhang and the Jacobian of F (from the PETSc user manual) 28c4762a1bSJed Brown 295ab1ac2bSHong Zhang dF dF 305ab1ac2bSHong Zhang J(F) = a * -- + -- 31c4762a1bSJed Brown du' du 32c4762a1bSJed Brown 335ab1ac2bSHong Zhang and the JacobianP of the explicit right-hand side of (2) f(u,t) ( which is equivalent to -F(0,u,t)). 34c4762a1bSJed Brown df [ 0 ] 35c4762a1bSJed Brown -- = [ ] 36c4762a1bSJed Brown dp [ (1 - u_1^2) u_2 - u_1 ]. 37c4762a1bSJed Brown 38c4762a1bSJed Brown See ex20.c for more details on the Jacobian. 39c4762a1bSJed Brown 40c4762a1bSJed Brown ------------------------------------------------------------------------- */ 41c4762a1bSJed Brown #include <petscts.h> 42c4762a1bSJed Brown #include <petsctao.h> 43c4762a1bSJed Brown 44c4762a1bSJed Brown typedef struct _n_User *User; 45c4762a1bSJed Brown struct _n_User { 46c4762a1bSJed Brown PetscReal mu; 47c4762a1bSJed Brown PetscReal next_output; 48c4762a1bSJed Brown 49c4762a1bSJed Brown /* Sensitivity analysis support */ 50c4762a1bSJed Brown PetscInt steps; 51c4762a1bSJed Brown PetscReal ftime; 52c4762a1bSJed Brown Mat A; /* Jacobian matrix */ 53c4762a1bSJed Brown Mat Jacp; /* JacobianP matrix */ 54c4762a1bSJed Brown Vec U,lambda[2],mup[2]; /* adjoint variables */ 55c4762a1bSJed Brown }; 56c4762a1bSJed Brown 57c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE -------------------- */ 58c4762a1bSJed Brown 59c4762a1bSJed Brown static PetscErrorCode RHSFunction(TS ts,PetscReal t,Vec U,Vec F,void *ctx) 60c4762a1bSJed Brown { 61c4762a1bSJed Brown User user = (User)ctx; 62c4762a1bSJed Brown PetscScalar *f; 63c4762a1bSJed Brown const PetscScalar *u; 64c4762a1bSJed Brown 65c4762a1bSJed Brown PetscFunctionBeginUser; 66*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(U,&u)); 67*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(F,&f)); 68c4762a1bSJed Brown f[0] = u[1]; 69c4762a1bSJed Brown f[1] = user->mu*((1.-u[0]*u[0])*u[1]-u[0]); 70*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(U,&u)); 71*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(F,&f)); 72c4762a1bSJed Brown PetscFunctionReturn(0); 73c4762a1bSJed Brown } 74c4762a1bSJed Brown 75c4762a1bSJed Brown static PetscErrorCode RHSJacobian(TS ts,PetscReal t,Vec U,Mat A,Mat B,void *ctx) 76c4762a1bSJed Brown { 77c4762a1bSJed Brown User user = (User)ctx; 78c4762a1bSJed Brown PetscReal mu = user->mu; 79c4762a1bSJed Brown PetscInt rowcol[] = {0,1}; 80c4762a1bSJed Brown PetscScalar J[2][2]; 81c4762a1bSJed Brown const PetscScalar *u; 82c4762a1bSJed Brown 83c4762a1bSJed Brown PetscFunctionBeginUser; 84*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(U,&u)); 85c4762a1bSJed Brown J[0][0] = 0; 86c4762a1bSJed Brown J[1][0] = -mu*(2.0*u[1]*u[0]+1.); 87c4762a1bSJed Brown J[0][1] = 1.0; 88c4762a1bSJed Brown J[1][1] = mu*(1.0-u[0]*u[0]); 89*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(A,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES)); 90*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 91*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 92c4762a1bSJed Brown if (A != B) { 93*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 94*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 95c4762a1bSJed Brown } 96*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(U,&u)); 97c4762a1bSJed Brown PetscFunctionReturn(0); 98c4762a1bSJed Brown } 99c4762a1bSJed Brown 100c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE -------------------- */ 101c4762a1bSJed Brown 102c4762a1bSJed Brown static PetscErrorCode IFunction(TS ts,PetscReal t,Vec U,Vec Udot,Vec F,void *ctx) 103c4762a1bSJed Brown { 104c4762a1bSJed Brown User user = (User)ctx; 105c4762a1bSJed Brown const PetscScalar *u,*udot; 106c4762a1bSJed Brown PetscScalar *f; 107c4762a1bSJed Brown 108c4762a1bSJed Brown PetscFunctionBeginUser; 109*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(U,&u)); 110*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(Udot,&udot)); 111*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(F,&f)); 112c4762a1bSJed Brown f[0] = udot[0] - u[1]; 113c4762a1bSJed Brown f[1] = udot[1] - user->mu*((1.0-u[0]*u[0])*u[1] - u[0]); 114*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(U,&u)); 115*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(Udot,&udot)); 116*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(F,&f)); 117c4762a1bSJed Brown PetscFunctionReturn(0); 118c4762a1bSJed Brown } 119c4762a1bSJed Brown 120c4762a1bSJed Brown static PetscErrorCode IJacobian(TS ts,PetscReal t,Vec U,Vec Udot,PetscReal a,Mat A,Mat B,void *ctx) 121c4762a1bSJed Brown { 122c4762a1bSJed Brown User user = (User)ctx; 123c4762a1bSJed Brown PetscInt rowcol[] = {0,1}; 124c4762a1bSJed Brown PetscScalar J[2][2]; 125c4762a1bSJed Brown const PetscScalar *u; 126c4762a1bSJed Brown 127c4762a1bSJed Brown PetscFunctionBeginUser; 128*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(U,&u)); 129c4762a1bSJed Brown 130c4762a1bSJed Brown J[0][0] = a; J[0][1] = -1.0; 131c4762a1bSJed Brown J[1][0] = user->mu*(2.0*u[0]*u[1] + 1.0); J[1][1] = a - user->mu*(1.0-u[0]*u[0]); 132c4762a1bSJed Brown 133*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(B,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES)); 134*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(U,&u)); 135c4762a1bSJed Brown 136*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 137*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 138c4762a1bSJed Brown if (B && A != B) { 139*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 140*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 141c4762a1bSJed Brown } 142c4762a1bSJed Brown PetscFunctionReturn(0); 143c4762a1bSJed Brown } 144c4762a1bSJed Brown 145c4762a1bSJed Brown static PetscErrorCode RHSJacobianP(TS ts,PetscReal t,Vec U,Mat A,void *ctx) 146c4762a1bSJed Brown { 147c4762a1bSJed Brown PetscInt row[] = {0,1},col[]={0}; 148c4762a1bSJed Brown PetscScalar J[2][1]; 149c4762a1bSJed Brown const PetscScalar *u; 150c4762a1bSJed Brown 151c4762a1bSJed Brown PetscFunctionBeginUser; 152*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(U,&u)); 153c4762a1bSJed Brown J[0][0] = 0; 154c4762a1bSJed Brown J[1][0] = (1.-u[0]*u[0])*u[1]-u[0]; 155*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(A,2,row,1,col,&J[0][0],INSERT_VALUES)); 156*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 157*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 158*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(U,&u)); 159c4762a1bSJed Brown PetscFunctionReturn(0); 160c4762a1bSJed Brown } 161c4762a1bSJed Brown 162c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */ 163c4762a1bSJed Brown static PetscErrorCode Monitor(TS ts,PetscInt step,PetscReal t,Vec U,void *ctx) 164c4762a1bSJed Brown { 165c4762a1bSJed Brown PetscErrorCode ierr; 166c4762a1bSJed Brown const PetscScalar *u; 167c4762a1bSJed Brown PetscReal tfinal, dt; 168c4762a1bSJed Brown User user = (User)ctx; 169c4762a1bSJed Brown Vec interpolatedU; 170c4762a1bSJed Brown 171c4762a1bSJed Brown PetscFunctionBeginUser; 172*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSGetTimeStep(ts,&dt)); 173*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSGetMaxTime(ts,&tfinal)); 174c4762a1bSJed Brown 175c4762a1bSJed Brown while (user->next_output <= t && user->next_output <= tfinal) { 176*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDuplicate(U,&interpolatedU)); 177*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSInterpolate(ts,user->next_output,interpolatedU)); 178*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(interpolatedU,&u)); 179c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD,"[%g] %D TS %g (dt = %g) X %g %g\n", 180c4762a1bSJed Brown (double)user->next_output,step,(double)t,(double)dt,(double)PetscRealPart(u[0]), 181c4762a1bSJed Brown (double)PetscRealPart(u[1]));CHKERRQ(ierr); 182*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(interpolatedU,&u)); 183*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&interpolatedU)); 184c4762a1bSJed Brown user->next_output += 0.1; 185c4762a1bSJed Brown } 186c4762a1bSJed Brown PetscFunctionReturn(0); 187c4762a1bSJed Brown } 188c4762a1bSJed Brown 189c4762a1bSJed Brown int main(int argc,char **argv) 190c4762a1bSJed Brown { 191c4762a1bSJed Brown TS ts; 192c4762a1bSJed Brown PetscBool monitor = PETSC_FALSE,implicitform = PETSC_TRUE; 193c4762a1bSJed Brown PetscScalar *x_ptr,*y_ptr,derp; 194c4762a1bSJed Brown PetscMPIInt size; 195c4762a1bSJed Brown struct _n_User user; 196c4762a1bSJed Brown PetscErrorCode ierr; 197c4762a1bSJed Brown 198c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 199c4762a1bSJed Brown Initialize program 200c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 201c4762a1bSJed Brown ierr = PetscInitialize(&argc,&argv,NULL,help);if (ierr) return ierr; 202*5f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(PETSC_COMM_WORLD,&size)); 2033c633725SBarry Smith PetscCheck(size == 1,PETSC_COMM_WORLD,PETSC_ERR_WRONG_MPI_SIZE,"This is a uniprocessor example only!"); 204c4762a1bSJed Brown 205c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 206c4762a1bSJed Brown Set runtime options 207c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 208c4762a1bSJed Brown user.next_output = 0.0; 209c4762a1bSJed Brown user.mu = 1.0e3; 210c4762a1bSJed Brown user.steps = 0; 211c4762a1bSJed Brown user.ftime = 0.5; 212*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetBool(NULL,NULL,"-monitor",&monitor,NULL)); 213*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetReal(NULL,NULL,"-mu",&user.mu,NULL)); 214*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetBool(NULL,NULL,"-implicitform",&implicitform,NULL)); 215c4762a1bSJed Brown 216c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 217c4762a1bSJed Brown Create necessary matrix and vectors, solve same ODE on every process 218c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 219*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PETSC_COMM_WORLD,&user.A)); 220*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(user.A,PETSC_DECIDE,PETSC_DECIDE,2,2)); 221*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetFromOptions(user.A)); 222*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUp(user.A)); 223*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateVecs(user.A,&user.U,NULL)); 224c4762a1bSJed Brown 225*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PETSC_COMM_WORLD,&user.Jacp)); 226*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(user.Jacp,PETSC_DECIDE,PETSC_DECIDE,2,1)); 227*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetFromOptions(user.Jacp)); 228*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUp(user.Jacp)); 229c4762a1bSJed Brown 230c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 231c4762a1bSJed Brown Create timestepping solver context 232c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 233*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSCreate(PETSC_COMM_WORLD,&ts)); 234*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetEquationType(ts,TS_EQ_ODE_EXPLICIT)); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */ 235c4762a1bSJed Brown if (implicitform) { 236*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetIFunction(ts,NULL,IFunction,&user)); 237*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetIJacobian(ts,user.A,user.A,IJacobian,&user)); 238*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetType(ts,TSCN)); 239c4762a1bSJed Brown } else { 240*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetRHSFunction(ts,NULL,RHSFunction,&user)); 241*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetRHSJacobian(ts,user.A,user.A,RHSJacobian,&user)); 242*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetType(ts,TSRK)); 243c4762a1bSJed Brown } 244*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetRHSJacobianP(ts,user.Jacp,RHSJacobianP,&user)); 245*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetMaxTime(ts,user.ftime)); 246*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetTimeStep(ts,0.001)); 247*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetExactFinalTime(ts,TS_EXACTFINALTIME_MATCHSTEP)); 248c4762a1bSJed Brown if (monitor) { 249*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSMonitorSet(ts,Monitor,&user,NULL)); 250c4762a1bSJed Brown } 251c4762a1bSJed Brown 252c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 253c4762a1bSJed Brown Set initial conditions 254c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 255*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.U,&x_ptr)); 256c4762a1bSJed Brown x_ptr[0] = 2.0; 257c4762a1bSJed Brown x_ptr[1] = -2.0/3.0 + 10.0/(81.0*user.mu) - 292.0/(2187.0*user.mu*user.mu); 258*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.U,&x_ptr)); 259*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetTimeStep(ts,0.001)); 260c4762a1bSJed Brown 261c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 262c4762a1bSJed Brown Save trajectory of solution so that TSAdjointSolve() may be used 263c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 264*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetSaveTrajectory(ts)); 265c4762a1bSJed Brown 266c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 267c4762a1bSJed Brown Set runtime options 268c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 269*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetFromOptions(ts)); 270c4762a1bSJed Brown 271*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSolve(ts,user.U)); 272*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSGetSolveTime(ts,&user.ftime)); 273*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSGetStepNumber(ts,&user.steps)); 274c4762a1bSJed Brown 275c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 276c4762a1bSJed Brown Adjoint model starts here 277c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 278*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateVecs(user.A,&user.lambda[0],NULL)); 279c4762a1bSJed Brown /* Set initial conditions for the adjoint integration */ 280*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.lambda[0],&y_ptr)); 281c4762a1bSJed Brown y_ptr[0] = 1.0; y_ptr[1] = 0.0; 282*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.lambda[0],&y_ptr)); 283*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateVecs(user.A,&user.lambda[1],NULL)); 284*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.lambda[1],&y_ptr)); 285c4762a1bSJed Brown y_ptr[0] = 0.0; y_ptr[1] = 1.0; 286*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.lambda[1],&y_ptr)); 287c4762a1bSJed Brown 288*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateVecs(user.Jacp,&user.mup[0],NULL)); 289*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.mup[0],&x_ptr)); 290c4762a1bSJed Brown x_ptr[0] = 0.0; 291*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.mup[0],&x_ptr)); 292*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateVecs(user.Jacp,&user.mup[1],NULL)); 293*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.mup[1],&x_ptr)); 294c4762a1bSJed Brown x_ptr[0] = 0.0; 295*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.mup[1],&x_ptr)); 296c4762a1bSJed Brown 297*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetCostGradients(ts,2,user.lambda,user.mup)); 298c4762a1bSJed Brown 299*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSAdjointSolve(ts)); 300c4762a1bSJed Brown 301*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[y(tf)]/d[y0] d[y(tf)]/d[z0]\n")); 302*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecView(user.lambda[0],PETSC_VIEWER_STDOUT_WORLD)); 303*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[z(tf)]/d[y0] d[z(tf)]/d[z0]\n")); 304*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecView(user.lambda[1],PETSC_VIEWER_STDOUT_WORLD)); 305c4762a1bSJed Brown 306*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.mup[0],&x_ptr)); 307*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.lambda[0],&y_ptr)); 308c4762a1bSJed Brown derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0]; 309*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.mup[0],&x_ptr)); 310*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.lambda[0],&y_ptr)); 311*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt parameters: d[y(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp))); 312c4762a1bSJed Brown 313*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.mup[1],&x_ptr)); 314*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.lambda[1],&y_ptr)); 315c4762a1bSJed Brown derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0]; 316*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.mup[1],&x_ptr)); 317*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.lambda[1],&y_ptr)); 318*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\n sensivitity wrt parameters: d[z(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp))); 319c4762a1bSJed Brown 320c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 321c4762a1bSJed Brown Free work space. All PETSc objects should be destroyed when they 322c4762a1bSJed Brown are no longer needed. 323c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 324*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&user.A)); 325*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&user.Jacp)); 326*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&user.U)); 327*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&user.lambda[0])); 328*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&user.lambda[1])); 329*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&user.mup[0])); 330*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&user.mup[1])); 331*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSDestroy(&ts)); 332c4762a1bSJed Brown 333c4762a1bSJed Brown ierr = PetscFinalize(); 334c4762a1bSJed Brown return(ierr); 335c4762a1bSJed Brown } 336c4762a1bSJed Brown 337c4762a1bSJed Brown /*TEST 338c4762a1bSJed Brown 339c4762a1bSJed Brown test: 340c4762a1bSJed Brown requires: revolve 341c4762a1bSJed Brown args: -monitor 0 -ts_type theta -ts_theta_endpoint -ts_theta_theta 0.5 -viewer_binary_skip_info -ts_dt 0.001 -mu 100000 342c4762a1bSJed Brown 343c4762a1bSJed Brown test: 344c4762a1bSJed Brown suffix: 2 345c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 346c4762a1bSJed Brown 347c4762a1bSJed Brown test: 348c4762a1bSJed Brown suffix: 3 349c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 0 350c4762a1bSJed Brown output_file: output/ex20adj_2.out 351c4762a1bSJed Brown 352c4762a1bSJed Brown test: 353c4762a1bSJed Brown suffix: 4 354c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 355c4762a1bSJed Brown output_file: output/ex20adj_2.out 356c4762a1bSJed Brown 357c4762a1bSJed Brown test: 358c4762a1bSJed Brown suffix: 5 359c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 360c4762a1bSJed Brown output_file: output/ex20adj_2.out 361c4762a1bSJed Brown 362c4762a1bSJed Brown test: 363c4762a1bSJed Brown suffix: 6 364c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 365c4762a1bSJed Brown output_file: output/ex20adj_2.out 366c4762a1bSJed Brown 367c4762a1bSJed Brown test: 368c4762a1bSJed Brown suffix: 7 369c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 370c4762a1bSJed Brown output_file: output/ex20adj_2.out 371c4762a1bSJed Brown 372c4762a1bSJed Brown test: 373c4762a1bSJed Brown suffix: 8 37460f0b76eSHong Zhang requires: revolve !cams 375c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor 376c4762a1bSJed Brown output_file: output/ex20adj_3.out 377c4762a1bSJed Brown 378c4762a1bSJed Brown test: 379c4762a1bSJed Brown suffix: 9 38060f0b76eSHong Zhang requires: revolve !cams 381c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor 382c4762a1bSJed Brown output_file: output/ex20adj_4.out 383c4762a1bSJed Brown 384c4762a1bSJed Brown test: 385c4762a1bSJed Brown requires: revolve 386c4762a1bSJed Brown suffix: 10 387c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 388c4762a1bSJed Brown output_file: output/ex20adj_2.out 389c4762a1bSJed Brown 390c4762a1bSJed Brown test: 391c4762a1bSJed Brown requires: revolve 392c4762a1bSJed Brown suffix: 11 393c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 0 394c4762a1bSJed Brown output_file: output/ex20adj_2.out 395c4762a1bSJed Brown 396c4762a1bSJed Brown test: 397c4762a1bSJed Brown suffix: 12 398c4762a1bSJed Brown requires: revolve 399c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 400c4762a1bSJed Brown output_file: output/ex20adj_2.out 401c4762a1bSJed Brown 402c4762a1bSJed Brown test: 403c4762a1bSJed Brown suffix: 13 404c4762a1bSJed Brown requires: revolve 405c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 406c4762a1bSJed Brown output_file: output/ex20adj_2.out 407c4762a1bSJed Brown 408c4762a1bSJed Brown test: 409c4762a1bSJed Brown suffix: 14 410c4762a1bSJed Brown requires: revolve 411c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 412c4762a1bSJed Brown output_file: output/ex20adj_2.out 413c4762a1bSJed Brown 414c4762a1bSJed Brown test: 415c4762a1bSJed Brown suffix: 15 416c4762a1bSJed Brown requires: revolve 417c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 418c4762a1bSJed Brown output_file: output/ex20adj_2.out 419c4762a1bSJed Brown 420c4762a1bSJed Brown test: 421c4762a1bSJed Brown suffix: 16 422c4762a1bSJed Brown requires: revolve 423c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 424c4762a1bSJed Brown output_file: output/ex20adj_2.out 425c4762a1bSJed Brown 426c4762a1bSJed Brown test: 427c4762a1bSJed Brown suffix: 17 428c4762a1bSJed Brown requires: revolve 429c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 430c4762a1bSJed Brown output_file: output/ex20adj_2.out 431c4762a1bSJed Brown 432c4762a1bSJed Brown test: 433c4762a1bSJed Brown suffix: 18 434c4762a1bSJed Brown requires: revolve 435c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 436c4762a1bSJed Brown output_file: output/ex20adj_2.out 437c4762a1bSJed Brown 438c4762a1bSJed Brown test: 439c4762a1bSJed Brown suffix: 19 440c4762a1bSJed Brown requires: revolve 441c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 442c4762a1bSJed Brown output_file: output/ex20adj_2.out 443c4762a1bSJed Brown 444c4762a1bSJed Brown test: 445c4762a1bSJed Brown suffix: 20 446c4762a1bSJed Brown requires: revolve 447c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 448c4762a1bSJed Brown output_file: output/ex20adj_2.out 449c4762a1bSJed Brown 450c4762a1bSJed Brown test: 451c4762a1bSJed Brown suffix: 21 452c4762a1bSJed Brown requires: revolve 453c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 454c4762a1bSJed Brown output_file: output/ex20adj_2.out 455c4762a1bSJed Brown 456c4762a1bSJed Brown test: 457c4762a1bSJed Brown suffix: 22 458c4762a1bSJed Brown args: -ts_type beuler -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 459c4762a1bSJed Brown output_file: output/ex20adj_2.out 460cc4f23bcSHong Zhang 461cc4f23bcSHong Zhang test: 462cc4f23bcSHong Zhang suffix: 23 463cc4f23bcSHong Zhang requires: cams 464533251d3SHong Zhang args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor -ts_trajectory_memory_type cams 46560f0b76eSHong Zhang output_file: output/ex20adj_5.out 466cc4f23bcSHong Zhang 467cc4f23bcSHong Zhang test: 468cc4f23bcSHong Zhang suffix: 24 469cc4f23bcSHong Zhang requires: cams 470533251d3SHong Zhang args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor -ts_trajectory_memory_type cams 47160f0b76eSHong Zhang output_file: output/ex20adj_6.out 472cc4f23bcSHong Zhang 473c4762a1bSJed Brown TEST*/ 474