xref: /petsc/src/ts/tutorials/ex20adj.c (revision 63a3b9bc7a1f24f247904ccba9383635fe6abade)
1c4762a1bSJed Brown static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n";
2c4762a1bSJed Brown 
3c4762a1bSJed Brown /* ------------------------------------------------------------------------
4c4762a1bSJed Brown 
5c4762a1bSJed Brown    This program solves the van der Pol DAE ODE equivalent
6c4762a1bSJed Brown       [ u_1' ] = [          u_2                ]  (2)
7c4762a1bSJed Brown       [ u_2' ]   [ \mu ((1 - u_1^2) u_2 - u_1) ]
8c4762a1bSJed Brown    on the domain 0 <= x <= 1, with the boundary conditions
9c4762a1bSJed Brown        u_1(0) = 2, u_2(0) = - 2/3 +10/(81*\mu) - 292/(2187*\mu^2),
10c4762a1bSJed Brown    and
11c4762a1bSJed Brown        \mu = 10^6 ( y'(0) ~ -0.6666665432100101).,
12c4762a1bSJed Brown    and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with the implicit theta method and its discrete adjoint.
13c4762a1bSJed Brown 
14c4762a1bSJed Brown    Notes:
15c4762a1bSJed Brown    This code demonstrates the TSAdjoint interface to a DAE system.
16c4762a1bSJed Brown 
17c4762a1bSJed Brown    The user provides the implicit right-hand-side function
185ab1ac2bSHong Zhang    [ F(u',u,t) ] = [u' - f(u,t)] = [ u_1'] - [        u_2             ]
19c4762a1bSJed Brown                                    [ u_2']   [ \mu ((1-u_1^2)u_2-u_1) ]
20c4762a1bSJed Brown 
215ab1ac2bSHong Zhang    and the Jacobian of F (from the PETSc user manual)
22c4762a1bSJed Brown 
235ab1ac2bSHong Zhang               dF   dF
245ab1ac2bSHong Zhang    J(F) = a * -- + --
25c4762a1bSJed Brown               du'  du
26c4762a1bSJed Brown 
275ab1ac2bSHong Zhang    and the JacobianP of the explicit right-hand side of (2) f(u,t) ( which is equivalent to -F(0,u,t)).
28c4762a1bSJed Brown    df   [       0               ]
29c4762a1bSJed Brown    -- = [                       ]
30c4762a1bSJed Brown    dp   [ (1 - u_1^2) u_2 - u_1 ].
31c4762a1bSJed Brown 
32c4762a1bSJed Brown    See ex20.c for more details on the Jacobian.
33c4762a1bSJed Brown 
34c4762a1bSJed Brown   ------------------------------------------------------------------------- */
35c4762a1bSJed Brown #include <petscts.h>
36c4762a1bSJed Brown #include <petsctao.h>
37c4762a1bSJed Brown 
38c4762a1bSJed Brown typedef struct _n_User *User;
39c4762a1bSJed Brown struct _n_User {
40c4762a1bSJed Brown   PetscReal mu;
41c4762a1bSJed Brown   PetscReal next_output;
42c4762a1bSJed Brown 
43c4762a1bSJed Brown   /* Sensitivity analysis support */
44c4762a1bSJed Brown   PetscInt  steps;
45c4762a1bSJed Brown   PetscReal ftime;
46c4762a1bSJed Brown   Mat       A;                   /* Jacobian matrix */
47c4762a1bSJed Brown   Mat       Jacp;                /* JacobianP matrix */
48c4762a1bSJed Brown   Vec       U,lambda[2],mup[2];  /* adjoint variables */
49c4762a1bSJed Brown };
50c4762a1bSJed Brown 
51c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE  -------------------- */
52c4762a1bSJed Brown 
53c4762a1bSJed Brown static PetscErrorCode RHSFunction(TS ts,PetscReal t,Vec U,Vec F,void *ctx)
54c4762a1bSJed Brown {
55c4762a1bSJed Brown   User              user = (User)ctx;
56c4762a1bSJed Brown   PetscScalar       *f;
57c4762a1bSJed Brown   const PetscScalar *u;
58c4762a1bSJed Brown 
59c4762a1bSJed Brown   PetscFunctionBeginUser;
609566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U,&u));
619566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F,&f));
62c4762a1bSJed Brown   f[0] = u[1];
63c4762a1bSJed Brown   f[1] = user->mu*((1.-u[0]*u[0])*u[1]-u[0]);
649566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U,&u));
659566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F,&f));
66c4762a1bSJed Brown   PetscFunctionReturn(0);
67c4762a1bSJed Brown }
68c4762a1bSJed Brown 
69c4762a1bSJed Brown static PetscErrorCode RHSJacobian(TS ts,PetscReal t,Vec U,Mat A,Mat B,void *ctx)
70c4762a1bSJed Brown {
71c4762a1bSJed Brown   User              user = (User)ctx;
72c4762a1bSJed Brown   PetscReal         mu   = user->mu;
73c4762a1bSJed Brown   PetscInt          rowcol[] = {0,1};
74c4762a1bSJed Brown   PetscScalar       J[2][2];
75c4762a1bSJed Brown   const PetscScalar *u;
76c4762a1bSJed Brown 
77c4762a1bSJed Brown   PetscFunctionBeginUser;
789566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U,&u));
79c4762a1bSJed Brown   J[0][0] = 0;
80c4762a1bSJed Brown   J[1][0] = -mu*(2.0*u[1]*u[0]+1.);
81c4762a1bSJed Brown   J[0][1] = 1.0;
82c4762a1bSJed Brown   J[1][1] = mu*(1.0-u[0]*u[0]);
839566063dSJacob Faibussowitsch   PetscCall(MatSetValues(A,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES));
849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
86c4762a1bSJed Brown   if (A != B) {
879566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
889566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
89c4762a1bSJed Brown   }
909566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U,&u));
91c4762a1bSJed Brown   PetscFunctionReturn(0);
92c4762a1bSJed Brown }
93c4762a1bSJed Brown 
94c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE  -------------------- */
95c4762a1bSJed Brown 
96c4762a1bSJed Brown static PetscErrorCode IFunction(TS ts,PetscReal t,Vec U,Vec Udot,Vec F,void *ctx)
97c4762a1bSJed Brown {
98c4762a1bSJed Brown   User              user = (User)ctx;
99c4762a1bSJed Brown   const PetscScalar *u,*udot;
100c4762a1bSJed Brown   PetscScalar       *f;
101c4762a1bSJed Brown 
102c4762a1bSJed Brown   PetscFunctionBeginUser;
1039566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U,&u));
1049566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(Udot,&udot));
1059566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F,&f));
106c4762a1bSJed Brown   f[0] = udot[0] - u[1];
107c4762a1bSJed Brown   f[1] = udot[1] - user->mu*((1.0-u[0]*u[0])*u[1] - u[0]);
1089566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U,&u));
1099566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(Udot,&udot));
1109566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F,&f));
111c4762a1bSJed Brown   PetscFunctionReturn(0);
112c4762a1bSJed Brown }
113c4762a1bSJed Brown 
114c4762a1bSJed Brown static PetscErrorCode IJacobian(TS ts,PetscReal t,Vec U,Vec Udot,PetscReal a,Mat A,Mat B,void *ctx)
115c4762a1bSJed Brown {
116c4762a1bSJed Brown   User              user     = (User)ctx;
117c4762a1bSJed Brown   PetscInt          rowcol[] = {0,1};
118c4762a1bSJed Brown   PetscScalar       J[2][2];
119c4762a1bSJed Brown   const PetscScalar *u;
120c4762a1bSJed Brown 
121c4762a1bSJed Brown   PetscFunctionBeginUser;
1229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U,&u));
123c4762a1bSJed Brown 
124c4762a1bSJed Brown   J[0][0] = a;     J[0][1] =  -1.0;
125c4762a1bSJed Brown   J[1][0] = user->mu*(2.0*u[0]*u[1] + 1.0);   J[1][1] = a - user->mu*(1.0-u[0]*u[0]);
126c4762a1bSJed Brown 
1279566063dSJacob Faibussowitsch   PetscCall(MatSetValues(B,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES));
1289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U,&u));
129c4762a1bSJed Brown 
1309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
1319566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
132c4762a1bSJed Brown   if (B && A != B) {
1339566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
1349566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
135c4762a1bSJed Brown   }
136c4762a1bSJed Brown   PetscFunctionReturn(0);
137c4762a1bSJed Brown }
138c4762a1bSJed Brown 
139c4762a1bSJed Brown static PetscErrorCode RHSJacobianP(TS ts,PetscReal t,Vec U,Mat A,void *ctx)
140c4762a1bSJed Brown {
141c4762a1bSJed Brown   PetscInt          row[] = {0,1},col[]={0};
142c4762a1bSJed Brown   PetscScalar       J[2][1];
143c4762a1bSJed Brown   const PetscScalar *u;
144c4762a1bSJed Brown 
145c4762a1bSJed Brown   PetscFunctionBeginUser;
1469566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U,&u));
147c4762a1bSJed Brown   J[0][0] = 0;
148c4762a1bSJed Brown   J[1][0] = (1.-u[0]*u[0])*u[1]-u[0];
1499566063dSJacob Faibussowitsch   PetscCall(MatSetValues(A,2,row,1,col,&J[0][0],INSERT_VALUES));
1509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
1519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
1529566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U,&u));
153c4762a1bSJed Brown   PetscFunctionReturn(0);
154c4762a1bSJed Brown }
155c4762a1bSJed Brown 
156c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */
157c4762a1bSJed Brown static PetscErrorCode Monitor(TS ts,PetscInt step,PetscReal t,Vec U,void *ctx)
158c4762a1bSJed Brown {
159c4762a1bSJed Brown   const PetscScalar *u;
160c4762a1bSJed Brown   PetscReal         tfinal, dt;
161c4762a1bSJed Brown   User              user = (User)ctx;
162c4762a1bSJed Brown   Vec               interpolatedU;
163c4762a1bSJed Brown 
164c4762a1bSJed Brown   PetscFunctionBeginUser;
1659566063dSJacob Faibussowitsch   PetscCall(TSGetTimeStep(ts,&dt));
1669566063dSJacob Faibussowitsch   PetscCall(TSGetMaxTime(ts,&tfinal));
167c4762a1bSJed Brown 
168c4762a1bSJed Brown   while (user->next_output <= t && user->next_output <= tfinal) {
1699566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(U,&interpolatedU));
1709566063dSJacob Faibussowitsch     PetscCall(TSInterpolate(ts,user->next_output,interpolatedU));
1719566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(interpolatedU,&u));
172*63a3b9bcSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_WORLD,"[%g] %" PetscInt_FMT " TS %g (dt = %g) X %g %g\n",
173*63a3b9bcSJacob Faibussowitsch                           (double)user->next_output,step,(double)t,(double)dt,
174*63a3b9bcSJacob Faibussowitsch                           (double)PetscRealPart(u[0]),(double)PetscRealPart(u[1])));
1759566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(interpolatedU,&u));
1769566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&interpolatedU));
177c4762a1bSJed Brown     user->next_output += 0.1;
178c4762a1bSJed Brown   }
179c4762a1bSJed Brown   PetscFunctionReturn(0);
180c4762a1bSJed Brown }
181c4762a1bSJed Brown 
182c4762a1bSJed Brown int main(int argc,char **argv)
183c4762a1bSJed Brown {
184c4762a1bSJed Brown   TS             ts;
185c4762a1bSJed Brown   PetscBool      monitor = PETSC_FALSE,implicitform = PETSC_TRUE;
186c4762a1bSJed Brown   PetscScalar    *x_ptr,*y_ptr,derp;
187c4762a1bSJed Brown   PetscMPIInt    size;
188c4762a1bSJed Brown   struct _n_User user;
189c4762a1bSJed Brown 
190c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
191c4762a1bSJed Brown      Initialize program
192c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
1939566063dSJacob Faibussowitsch   PetscCall(PetscInitialize(&argc,&argv,NULL,help));
1949566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PETSC_COMM_WORLD,&size));
1953c633725SBarry Smith   PetscCheck(size == 1,PETSC_COMM_WORLD,PETSC_ERR_WRONG_MPI_SIZE,"This is a uniprocessor example only!");
196c4762a1bSJed Brown 
197c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
198c4762a1bSJed Brown     Set runtime options
199c4762a1bSJed Brown     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
200c4762a1bSJed Brown   user.next_output = 0.0;
201c4762a1bSJed Brown   user.mu          = 1.0e3;
202c4762a1bSJed Brown   user.steps       = 0;
203c4762a1bSJed Brown   user.ftime       = 0.5;
2049566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL,NULL,"-monitor",&monitor,NULL));
2059566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetReal(NULL,NULL,"-mu",&user.mu,NULL));
2069566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL,NULL,"-implicitform",&implicitform,NULL));
207c4762a1bSJed Brown 
208c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
209c4762a1bSJed Brown     Create necessary matrix and vectors, solve same ODE on every process
210c4762a1bSJed Brown     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2119566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_WORLD,&user.A));
2129566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(user.A,PETSC_DECIDE,PETSC_DECIDE,2,2));
2139566063dSJacob Faibussowitsch   PetscCall(MatSetFromOptions(user.A));
2149566063dSJacob Faibussowitsch   PetscCall(MatSetUp(user.A));
2159566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.A,&user.U,NULL));
216c4762a1bSJed Brown 
2179566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_WORLD,&user.Jacp));
2189566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(user.Jacp,PETSC_DECIDE,PETSC_DECIDE,2,1));
2199566063dSJacob Faibussowitsch   PetscCall(MatSetFromOptions(user.Jacp));
2209566063dSJacob Faibussowitsch   PetscCall(MatSetUp(user.Jacp));
221c4762a1bSJed Brown 
222c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
223c4762a1bSJed Brown      Create timestepping solver context
224c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2259566063dSJacob Faibussowitsch   PetscCall(TSCreate(PETSC_COMM_WORLD,&ts));
2269566063dSJacob Faibussowitsch   PetscCall(TSSetEquationType(ts,TS_EQ_ODE_EXPLICIT)); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */
227c4762a1bSJed Brown   if (implicitform) {
2289566063dSJacob Faibussowitsch     PetscCall(TSSetIFunction(ts,NULL,IFunction,&user));
2299566063dSJacob Faibussowitsch     PetscCall(TSSetIJacobian(ts,user.A,user.A,IJacobian,&user));
2309566063dSJacob Faibussowitsch     PetscCall(TSSetType(ts,TSCN));
231c4762a1bSJed Brown   } else {
2329566063dSJacob Faibussowitsch     PetscCall(TSSetRHSFunction(ts,NULL,RHSFunction,&user));
2339566063dSJacob Faibussowitsch     PetscCall(TSSetRHSJacobian(ts,user.A,user.A,RHSJacobian,&user));
2349566063dSJacob Faibussowitsch     PetscCall(TSSetType(ts,TSRK));
235c4762a1bSJed Brown   }
2369566063dSJacob Faibussowitsch   PetscCall(TSSetRHSJacobianP(ts,user.Jacp,RHSJacobianP,&user));
2379566063dSJacob Faibussowitsch   PetscCall(TSSetMaxTime(ts,user.ftime));
2389566063dSJacob Faibussowitsch   PetscCall(TSSetTimeStep(ts,0.001));
2399566063dSJacob Faibussowitsch   PetscCall(TSSetExactFinalTime(ts,TS_EXACTFINALTIME_MATCHSTEP));
2409566063dSJacob Faibussowitsch   if (monitor) PetscCall(TSMonitorSet(ts,Monitor,&user,NULL));
241c4762a1bSJed Brown 
242c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
243c4762a1bSJed Brown      Set initial conditions
244c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2459566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.U,&x_ptr));
246c4762a1bSJed Brown   x_ptr[0] = 2.0;
247c4762a1bSJed Brown   x_ptr[1] = -2.0/3.0 + 10.0/(81.0*user.mu) - 292.0/(2187.0*user.mu*user.mu);
2489566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.U,&x_ptr));
2499566063dSJacob Faibussowitsch   PetscCall(TSSetTimeStep(ts,0.001));
250c4762a1bSJed Brown 
251c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
252c4762a1bSJed Brown     Save trajectory of solution so that TSAdjointSolve() may be used
253c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2549566063dSJacob Faibussowitsch   PetscCall(TSSetSaveTrajectory(ts));
255c4762a1bSJed Brown 
256c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
257c4762a1bSJed Brown      Set runtime options
258c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2599566063dSJacob Faibussowitsch   PetscCall(TSSetFromOptions(ts));
260c4762a1bSJed Brown 
2619566063dSJacob Faibussowitsch   PetscCall(TSSolve(ts,user.U));
2629566063dSJacob Faibussowitsch   PetscCall(TSGetSolveTime(ts,&user.ftime));
2639566063dSJacob Faibussowitsch   PetscCall(TSGetStepNumber(ts,&user.steps));
264c4762a1bSJed Brown 
265c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
266c4762a1bSJed Brown      Adjoint model starts here
267c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2689566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.A,&user.lambda[0],NULL));
269c4762a1bSJed Brown   /* Set initial conditions for the adjoint integration */
2709566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[0],&y_ptr));
271c4762a1bSJed Brown   y_ptr[0] = 1.0; y_ptr[1] = 0.0;
2729566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[0],&y_ptr));
2739566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.A,&user.lambda[1],NULL));
2749566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[1],&y_ptr));
275c4762a1bSJed Brown   y_ptr[0] = 0.0; y_ptr[1] = 1.0;
2769566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[1],&y_ptr));
277c4762a1bSJed Brown 
2789566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.Jacp,&user.mup[0],NULL));
2799566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[0],&x_ptr));
280c4762a1bSJed Brown   x_ptr[0] = 0.0;
2819566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[0],&x_ptr));
2829566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.Jacp,&user.mup[1],NULL));
2839566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[1],&x_ptr));
284c4762a1bSJed Brown   x_ptr[0] = 0.0;
2859566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[1],&x_ptr));
286c4762a1bSJed Brown 
2879566063dSJacob Faibussowitsch   PetscCall(TSSetCostGradients(ts,2,user.lambda,user.mup));
288c4762a1bSJed Brown 
2899566063dSJacob Faibussowitsch   PetscCall(TSAdjointSolve(ts));
290c4762a1bSJed Brown 
2919566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[y(tf)]/d[y0]  d[y(tf)]/d[z0]\n"));
2929566063dSJacob Faibussowitsch   PetscCall(VecView(user.lambda[0],PETSC_VIEWER_STDOUT_WORLD));
2939566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[z(tf)]/d[y0]  d[z(tf)]/d[z0]\n"));
2949566063dSJacob Faibussowitsch   PetscCall(VecView(user.lambda[1],PETSC_VIEWER_STDOUT_WORLD));
295c4762a1bSJed Brown 
2969566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[0],&x_ptr));
2979566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[0],&y_ptr));
298c4762a1bSJed Brown   derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0];
2999566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[0],&x_ptr));
3009566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[0],&y_ptr));
3019566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt parameters: d[y(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp)));
302c4762a1bSJed Brown 
3039566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[1],&x_ptr));
3049566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[1],&y_ptr));
305c4762a1bSJed Brown   derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0];
3069566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[1],&x_ptr));
3079566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[1],&y_ptr));
3089566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensivitity wrt parameters: d[z(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp)));
309c4762a1bSJed Brown 
310c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
311c4762a1bSJed Brown      Free work space.  All PETSc objects should be destroyed when they
312c4762a1bSJed Brown      are no longer needed.
313c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
3149566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&user.A));
3159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&user.Jacp));
3169566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.U));
3179566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.lambda[0]));
3189566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.lambda[1]));
3199566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.mup[0]));
3209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.mup[1]));
3219566063dSJacob Faibussowitsch   PetscCall(TSDestroy(&ts));
322c4762a1bSJed Brown 
3239566063dSJacob Faibussowitsch   PetscCall(PetscFinalize());
324b122ec5aSJacob Faibussowitsch   return 0;
325c4762a1bSJed Brown }
326c4762a1bSJed Brown 
327c4762a1bSJed Brown /*TEST
328c4762a1bSJed Brown 
329c4762a1bSJed Brown     test:
330c4762a1bSJed Brown       requires: revolve
331c4762a1bSJed Brown       args: -monitor 0 -ts_type theta -ts_theta_endpoint -ts_theta_theta 0.5 -viewer_binary_skip_info -ts_dt 0.001 -mu 100000
332c4762a1bSJed Brown 
333c4762a1bSJed Brown     test:
334c4762a1bSJed Brown       suffix: 2
335c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only
336c4762a1bSJed Brown 
337c4762a1bSJed Brown     test:
338c4762a1bSJed Brown       suffix: 3
339c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 0
340c4762a1bSJed Brown       output_file: output/ex20adj_2.out
341c4762a1bSJed Brown 
342c4762a1bSJed Brown     test:
343c4762a1bSJed Brown       suffix: 4
344c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
345c4762a1bSJed Brown       output_file: output/ex20adj_2.out
346c4762a1bSJed Brown 
347c4762a1bSJed Brown     test:
348c4762a1bSJed Brown       suffix: 5
349c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
350c4762a1bSJed Brown       output_file: output/ex20adj_2.out
351c4762a1bSJed Brown 
352c4762a1bSJed Brown     test:
353c4762a1bSJed Brown       suffix: 6
354c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0
355c4762a1bSJed Brown       output_file: output/ex20adj_2.out
356c4762a1bSJed Brown 
357c4762a1bSJed Brown     test:
358c4762a1bSJed Brown       suffix: 7
359c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
360c4762a1bSJed Brown       output_file: output/ex20adj_2.out
361c4762a1bSJed Brown 
362c4762a1bSJed Brown     test:
363c4762a1bSJed Brown       suffix: 8
36460f0b76eSHong Zhang       requires: revolve !cams
365c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor
366c4762a1bSJed Brown       output_file: output/ex20adj_3.out
367c4762a1bSJed Brown 
368c4762a1bSJed Brown     test:
369c4762a1bSJed Brown       suffix: 9
37060f0b76eSHong Zhang       requires: revolve !cams
371c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor
372c4762a1bSJed Brown       output_file: output/ex20adj_4.out
373c4762a1bSJed Brown 
374c4762a1bSJed Brown     test:
375c4762a1bSJed Brown       requires: revolve
376c4762a1bSJed Brown       suffix: 10
377c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only
378c4762a1bSJed Brown       output_file: output/ex20adj_2.out
379c4762a1bSJed Brown 
380c4762a1bSJed Brown     test:
381c4762a1bSJed Brown       requires: revolve
382c4762a1bSJed Brown       suffix: 11
383c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 0
384c4762a1bSJed Brown       output_file: output/ex20adj_2.out
385c4762a1bSJed Brown 
386c4762a1bSJed Brown     test:
387c4762a1bSJed Brown       suffix: 12
388c4762a1bSJed Brown       requires: revolve
389c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only
390c4762a1bSJed Brown       output_file: output/ex20adj_2.out
391c4762a1bSJed Brown 
392c4762a1bSJed Brown     test:
393c4762a1bSJed Brown       suffix: 13
394c4762a1bSJed Brown       requires: revolve
395c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0
396c4762a1bSJed Brown       output_file: output/ex20adj_2.out
397c4762a1bSJed Brown 
398c4762a1bSJed Brown     test:
399c4762a1bSJed Brown       suffix: 14
400c4762a1bSJed Brown       requires: revolve
401c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
402c4762a1bSJed Brown       output_file: output/ex20adj_2.out
403c4762a1bSJed Brown 
404c4762a1bSJed Brown     test:
405c4762a1bSJed Brown       suffix: 15
406c4762a1bSJed Brown       requires: revolve
407c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0
408c4762a1bSJed Brown       output_file: output/ex20adj_2.out
409c4762a1bSJed Brown 
410c4762a1bSJed Brown     test:
411c4762a1bSJed Brown       suffix: 16
412c4762a1bSJed Brown       requires: revolve
413c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
414c4762a1bSJed Brown       output_file: output/ex20adj_2.out
415c4762a1bSJed Brown 
416c4762a1bSJed Brown     test:
417c4762a1bSJed Brown       suffix: 17
418c4762a1bSJed Brown       requires: revolve
419c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
420c4762a1bSJed Brown       output_file: output/ex20adj_2.out
421c4762a1bSJed Brown 
422c4762a1bSJed Brown     test:
423c4762a1bSJed Brown       suffix: 18
424c4762a1bSJed Brown       requires: revolve
425c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
426c4762a1bSJed Brown       output_file: output/ex20adj_2.out
427c4762a1bSJed Brown 
428c4762a1bSJed Brown     test:
429c4762a1bSJed Brown       suffix: 19
430c4762a1bSJed Brown       requires: revolve
431c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
432c4762a1bSJed Brown       output_file: output/ex20adj_2.out
433c4762a1bSJed Brown 
434c4762a1bSJed Brown     test:
435c4762a1bSJed Brown       suffix: 20
436c4762a1bSJed Brown       requires: revolve
437c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0
438c4762a1bSJed Brown       output_file: output/ex20adj_2.out
439c4762a1bSJed Brown 
440c4762a1bSJed Brown     test:
441c4762a1bSJed Brown       suffix: 21
442c4762a1bSJed Brown       requires: revolve
443c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
444c4762a1bSJed Brown       output_file: output/ex20adj_2.out
445c4762a1bSJed Brown 
446c4762a1bSJed Brown     test:
447c4762a1bSJed Brown       suffix: 22
448c4762a1bSJed Brown       args: -ts_type beuler -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only
449c4762a1bSJed Brown       output_file: output/ex20adj_2.out
450cc4f23bcSHong Zhang 
451cc4f23bcSHong Zhang     test:
452cc4f23bcSHong Zhang       suffix: 23
453cc4f23bcSHong Zhang       requires: cams
454533251d3SHong Zhang       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor -ts_trajectory_memory_type cams
45560f0b76eSHong Zhang       output_file: output/ex20adj_5.out
456cc4f23bcSHong Zhang 
457cc4f23bcSHong Zhang     test:
458cc4f23bcSHong Zhang       suffix: 24
459cc4f23bcSHong Zhang       requires: cams
460533251d3SHong Zhang       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor -ts_trajectory_memory_type cams
46160f0b76eSHong Zhang       output_file: output/ex20adj_6.out
462cc4f23bcSHong Zhang 
463c4762a1bSJed Brown TEST*/
464